is.broadpeak FALSE 
read /broad/hptmp/anshul/idr_2292316512/MOSAiCS3-P300-K562-Rep1.relaxed.narrowPeak_2292316512 :  82377 peaks
 82377 peaks are left after cleaning
 /broad/hptmp/anshul/idr_2292316512/MOSAiCS3-P300-K562-Rep2.relaxed.narrowPeak_2292316512 :  100578 peaks
 100578  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: /broad/compbio/anshul/projects/encode3/evaluation/tfs/phase1/idrResults/origWidth/MOSAICS3/idr/MOSAiCS3-P300-K562-Rep1_VS_MOSAiCS3-P300-K562-Rep2-uri.sav 
EM is done

EM is saved at: /broad/compbio/anshul/projects/encode3/evaluation/tfs/phase1/idrResults/origWidth/MOSAICS3/idr/MOSAiCS3-P300-K562-Rep1_VS_MOSAiCS3-P300-K562-Rep2-em.sav 
EM estimation for the following files
/broad/hptmp/anshul/idr_2292316512/MOSAiCS3-P300-K562-Rep1.relaxed.narrowPeak_2292316512
/broad/hptmp/anshul/idr_2292316512/MOSAiCS3-P300-K562-Rep2.relaxed.narrowPeak_2292316512
$p
[1] 0.7371207

$rho1
[1] 0.8205386

$rho2
[1] 0

Write overlapped peaks and local idr to: /broad/compbio/anshul/projects/encode3/evaluation/tfs/phase1/idrResults/origWidth/MOSAICS3/idr/MOSAiCS3-P300-K562-Rep1_VS_MOSAiCS3-P300-K562-Rep2-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 19671.69

$x.mean2
[1] 32425.68

$y.mean1
[1] 20193.51

$y.mean2
[1] 30966.35

$x.sd1
[1] 12762.21

$x.sd2
[1] 9785.198

$y.sd1
[1] 12980.13

$y.sd2
[1] 10695.58