python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ESRRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-FOSB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-SREBF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF7.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CUX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ESRRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-HSF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-NFE2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-RUNX3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RUNX3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RXRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SREBF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-TBX21.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-TBX21.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM23338-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM23338-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-FOSL1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RXRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-FOSL1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-ZNF263.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF7.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATM.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATM.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ESRRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RXRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ZNF274.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF274.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ZNF598.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF598.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ZNF768.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF768.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ARID1B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ARID1B.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF4.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF7.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-C11orf30.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-C11orf30.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CUX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-DACH1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-DACH1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-E2F1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ESRRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOSL1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUNB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MEIS2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MEIS2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MITF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MITF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2L1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-REST.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-REST.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SREBF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF263.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ZNF316.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF316.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF639.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-ATF3.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-RXRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ATF7.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CREB1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CUX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOS.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-HSF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUN.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAFK.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SRF.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- T47D-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes T47D-JUND.1x36mers.hg38-no-haps.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ESRRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-FOSB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- A549-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-SREBF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF7.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CUX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ESRRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-HSF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-NFE2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-RUNX3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RUNX3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RXRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SREBF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM12878-TBX21.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-TBX21.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM23338-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GM23338-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-FOSL1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RXRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- H1-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-FOSL1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HCT116-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-ZNF263.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF7.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ATM.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATM.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ESRRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RXRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ZNF274.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF274.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ZNF598.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF598.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HepG2-ZNF768.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF768.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- IMR-90-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Ishikawa-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ARID1B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ARID1B.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF4.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF7.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-BHLHE40.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-C11orf30.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-C11orf30.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CUX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-DACH1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-DACH1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-E2F1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ESRRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOSL1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUNB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MEIS2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MEIS2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-MITF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MITF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2L1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-REST.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-REST.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SREBF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF263.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ZNF316.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF316.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- K562-ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF639.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-ATF3.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- liver-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-RXRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ATF7.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CREB1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CUX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOS.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-HSF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUN.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAFK.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MCF-7-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SRF.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- T47D-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes T47D-JUND.1x36mers.hg38-no-haps.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -chr chrM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-BHLHE40.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ESRRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-FOSB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-NFE2L2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-SREBF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF7.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CUX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ESRRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-HSF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-NFE2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-RUNX3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RUNX3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RXRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SREBF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-TBX21.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-TBX21.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM23338-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM23338-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-FOSL1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RXRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-FOSL1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-ZNF263.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF7.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATM.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATM.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ESRRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RXRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ZNF274.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF274.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ZNF598.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF598.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ZNF768.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF768.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ARID1B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ARID1B.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF4.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF7.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-BHLHE40.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-C11orf30.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-C11orf30.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CUX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-DACH1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-DACH1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-E2F1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ESRRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOSL1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUNB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MEIS2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MEIS2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MITF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MITF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2L1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-PKNOX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-REST.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-REST.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SREBF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF263.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ZNF316.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF316.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF639.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-ATF3.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-RXRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ATF7.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CREB1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CUX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOS.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-HSF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUN.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAFK.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SRF.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- T47D-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes T47D-JUND.1x36mers.hg38-no-haps.unique.5p.minus.wig -stranded - -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-BHLHE40.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ESRRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-FOSB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-NFE2L2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- A549-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes A549-SREBF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ATF7.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-CUX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-ESRRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-HSF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-NFE2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-RUNX3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RUNX3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-RXRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SREBF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM12878-TBX21.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM12878-TBX21.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM23338-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- GM23338-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes GM23338-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-FOSL1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-RXRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- H1-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H1-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-FOSL1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HCT116-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HCT116-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293-ZNF263.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATF7.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ATM.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ATM.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ESRRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-FOXA2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-RXRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ZNF274.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF274.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ZNF598.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF598.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HepG2-ZNF768.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes HepG2-ZNF768.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- IMR-90-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes IMR-90-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ishikawa-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes Ishikawa-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ARID1B.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ARID1B.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF4.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF4.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ATF7.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-BHLHE40.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-BHLHE40.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-C11orf30.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-C11orf30.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-CUX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-DACH1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-DACH1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-E2F1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ESRRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-FOSL1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOSL1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-JUNB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUNB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MAFF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MEIS2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MEIS2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-MITF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-MITF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-NFE2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-NFE2L1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-NFE2L1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-PKNOX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-REST.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-REST.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SREBF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ZNF263.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF263.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ZNF316.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF316.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- K562-ZNF639.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes K562-ZNF639.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-ATF3.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-ATF3.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-FOXA2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-FOXA2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- liver-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes liver-RXRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-ATF7.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ATF7.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CREB1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CREB1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-CUX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-CUX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-FOS.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOS.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-HSF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-HSF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-JUN.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUN.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-MAFK.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAFK.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-RFX1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MCF-7-SRF.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MCF-7-SRF.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- T47D-JUND.1x36mers.hg38-no-haps.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes T47D-JUND.1x36mers.hg38-no-haps.unique.5p.plus.wig -stranded + -notitle -singlebasepair -RPM -uniqueBAM