python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-BHLHE40.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-BHLHE40.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-0.5_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-0.5_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-1_hour-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-1_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-1_hour-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-1_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-1_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-10_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-10_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-12_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-12_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-2_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-2_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-2_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-2_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-3_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-3_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-3_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-3_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-4_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-4_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-4_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-6_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-6_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-7_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-7_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-7_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-7_hour-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-8_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-8_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100_nM-8_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-dexamethasone-100.0_nM-5.0_minute-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ESRRA.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ESRRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ethanol-0.02_percent-1_hour-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ethanol-0.02_percent-1_hour-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ethanol-0.02_percent-1_hour-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ethanol-0.02_percent-1_hour-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ethanol-0.02_percent-1_hour-FOXA2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-ethanol-0.02_percent-1_hour-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-FOSB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-FOSB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-NFE2L2.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-NFE2L2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py A549-SREBF1.1x36mers.hg38-no-haps.unique.bam SAMstats-A549-SREBF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-endothelial_cell_of_umbilical_vein-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-endothelial_cell_of_umbilical_vein-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-endothelial_cell_of_umbilical_vein-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-ATF2.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-ATF2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-ATF7.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-ATF7.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-BHLHE40.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-BHLHE40.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-CUX1.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-CUX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-ESRRA.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-ESRRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-HSF1.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-HSF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-NFE2.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-NFE2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-PKNOX1.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-PKNOX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-RUNX3.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-RUNX3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-RXRA.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-RXRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-SREBF1.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-SREBF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM12878-TBX21.1x36mers.hg38-no-haps.unique.bam SAMstats-GM12878-TBX21.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM23338-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-GM23338-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GM23338-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-GM23338-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-ATF2.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-ATF2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-FOSL1.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-FOSL1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-RXRA.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-RXRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py H1-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-H1-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HCT116-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-HCT116-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HCT116-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-HCT116-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HCT116-FOSL1.1x36mers.hg38-no-haps.unique.bam SAMstats-HCT116-FOSL1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HCT116-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-HCT116-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HCT116-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-HCT116-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HCT116-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-HCT116-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique.bam SAMstats-HEK293-site_specific_recombination_ATF2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique.bam SAMstats-HEK293-site_specific_recombination_ZNF639.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HEK293-ZNF263.1x36mers.hg38-no-haps.unique.bam SAMstats-HEK293-ZNF263.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique.bam SAMstats-HEK293T-BHLHE40.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HEK293T-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-HEK293T-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique.bam SAMstats-HEK293T-PKNOX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-CRISPR_E2F1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-E2F1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-MAFF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-NFE2L2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-HeLa-S3-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ATF2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ATF2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ATF7.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ATF7.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ATM.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ATM.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-BHLHE40.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-BHLHE40.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_ATF2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_ATF4.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_E2F1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_FOXA2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_MAFG.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_NFE2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_NRL.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_PBX2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_RXRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_ZNF263.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_ZNF280B.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ESRRA.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ESRRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-ESRRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-forskolin_pyruvate-1_mM-6.0_hour_6_hour-HSF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-FOSL1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-FOSL1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-FOXA2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-FOXA2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-insulin_22-hydroxycholesterol-10_uM_100_uM-6.0_hour_6_hour-SREBF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-MAFF.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-MAFF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-NFE2L1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-NFE2L1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-NFE2L2.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-NFE2L2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-pravastatin-2.0_uM-16.0_hour-SREBF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-RFX1.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-RFX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-RXRA.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-RXRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ZNF274.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ZNF274.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ZNF598.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ZNF598.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HepG2-ZNF768.1x36mers.hg38-no-haps.unique.bam SAMstats-HepG2-ZNF768.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique.bam SAMstats-IMR-90-BHLHE40.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py IMR-90-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-IMR-90-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py IMR-90-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-IMR-90-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py IMR-90-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-IMR-90-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique.bam SAMstats-IMR-90-NFE2L2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py IMR-90-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-IMR-90-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-Ishikawa-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ishikawa-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-Ishikawa-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ishikawa-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-Ishikawa-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ishikawa-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-Ishikawa-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Ishikawa-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-Ishikawa-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ARID1B.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ARID1B.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ATF2.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ATF2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ATF4.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ATF4.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ATF7.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ATF7.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-BHLHE40.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-BHLHE40.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-C11orf30.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-C11orf30.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_CUX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_MAFG.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_NFE2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_PBX2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CRISPR_ZNF639.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-CUX1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-CUX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-DACH1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-DACH1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-E2F1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-E2F1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ESRRA.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ESRRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-FOSL1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-FOSL1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-interferon_alpha30.0_minute-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-interferon_alpha6.0_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-Interferon_gamma30.0_minute-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-Interferon_gamma6.0_hour-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-JUNB.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-JUNB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-MAFF.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-MAFF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-MEIS2.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-MEIS2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-MITF.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-MITF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-NFE2.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-NFE2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-NFE2L1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-NFE2L1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-PKNOX1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-PKNOX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-REST.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-REST.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-RFX1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-RFX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-SREBF1.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-SREBF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ZNF263.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ZNF263.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ZNF316.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ZNF316.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py K562-ZNF639.1x36mers.hg38-no-haps.unique.bam SAMstats-K562-ZNF639.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py liver-ATF3.1x36mers.hg38-no-haps.unique.bam SAMstats-liver-ATF3.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py liver-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-liver-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py liver-FOXA2.1x36mers.hg38-no-haps.unique.bam SAMstats-liver-FOXA2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py liver-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-liver-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py liver-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-liver-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py liver-RXRA.1x36mers.hg38-no-haps.unique.bam SAMstats-liver-RXRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF_10A-ethanol-0.01_percent-36.0_hour-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-ATF7.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-ATF7.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CEBPB.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CEBPB.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CREB1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CREB1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CRISPR_CEBPG.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CRISPR_E2F1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CRISPR_FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CRISPR_SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CRISPR_TFAP2C.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-CUX1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-CUX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-ESRRA.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-ESRRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-FOS.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-FOS.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-FOXA1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-FOXA1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-HSF1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-HSF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-JUN.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-JUN.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-MAFK.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-MAFK.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-PKNOX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-RFX1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-RFX1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-SREBF1.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-SREBF1.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MCF-7-SRF.1x36mers.hg38-no-haps.unique.bam SAMstats-MCF-7-SRF.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SK-N-SH-EP300.1x36mers.hg38-no-haps.unique.bam SAMstats-SK-N-SH-EP300.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique.bam SAMstats-SK-N-SH-FOSL2.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SK-N-SH-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-SK-N-SH-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SK-N-SH-MAX.1x36mers.hg38-no-haps.unique.bam SAMstats-SK-N-SH-MAX.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique.bam SAMstats-SK-N-SH-RFX5.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique.bam SAMstats-SK-N-SH-RXRA.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py T47D-JUND.1x36mers.hg38-no-haps.unique.bam SAMstats-T47D-JUND.1x36mers.hg38-no-haps.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools