python ~/code/SAMstats.py AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04760_ABA_ChIP_rep1-GSM2130957.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04760_EtOH_ChIP_rep1-GSM2130958.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04760_ABA_ChIP_rep2-GSM2130959.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04760_EtOH_ChIP_rep2-GSM2130960.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04760_ABA_ChIP_rep3-GSM2130961.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT5G04760_EtOH_ChIP_rep3-GSM2130962.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Col0_mockChIP_rep1-GSM2130981.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Col0_mockChIP_rep2-GSM2130982.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.bam SAMstats-AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.bam SAMstats-AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.bam SAMstats-AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.bam SAMstats-AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.bam SAMstats-AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.bam SAMstats-AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.bam SAMstats-AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.bam SAMstats-AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.bam SAMstats-AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.bam SAMstats-AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.bam SAMstats-AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.bam SAMstats-AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.bam SAMstats-AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.bam SAMstats-AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.bam SAMstats-AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.bam SAMstats-AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.bam SAMstats-AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.bam SAMstats-AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.bam SAMstats-AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.bam SAMstats-AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.bam SAMstats-AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.bam SAMstats-AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.bam SAMstats-AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.bam SAMstats-AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.bam SAMstats-AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.bam SAMstats-AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.bam SAMstats-AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.bam SAMstats-AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.bam SAMstats-AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.bam SAMstats-AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.bam SAMstats-AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.bam SAMstats-AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.bam SAMstats-AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.bam SAMstats-AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.bam SAMstats-AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.bam SAMstats-AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.bam SAMstats-AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.bam SAMstats-AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.bam SAMstats-AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.bam SAMstats-AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.bam SAMstats-AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.bam SAMstats-AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.bam SAMstats-AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.bam SAMstats-AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.bam SAMstats-AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.bam SAMstats-AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.bam SAMstats-AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.bam SAMstats-AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.bam SAMstats-AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.bam SAMstats-AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.bam SAMstats-AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.bam SAMstats-AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.bam SAMstats-AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.bam SAMstats-AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.bam SAMstats-AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.bam SAMstats-AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.bam SAMstats-AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.bam SAMstats-AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.bam SAMstats-AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.bam SAMstats-AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.bam SAMstats-AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.bam SAMstats-AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.bam SAMstats-AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.bam SAMstats-AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.bam SAMstats-AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.bam SAMstats-AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.bam SAMstats-AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.bam SAMstats-AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.bam SAMstats-AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.bam SAMstats-AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.bam SAMstats-AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.bam SAMstats-AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.bam SAMstats-AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.bam SAMstats-AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.bam SAMstats-AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.bam SAMstats-AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.bam SAMstats-AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.bam SAMstats-AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.bam SAMstats-AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.bam SAMstats-AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.bam SAMstats-AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.bam SAMstats-AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.bam SAMstats-AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.bam SAMstats-AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.bam SAMstats-AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.bam SAMstats-AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.bam SAMstats-AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.bam SAMstats-AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.bam SAMstats-AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.bam SAMstats-AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.bam SAMstats-AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.bam SAMstats-AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.bam SAMstats-AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.bam SAMstats-AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.bam SAMstats-AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.bam SAMstats-AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.bam SAMstats-AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.bam SAMstats-AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.bam SAMstats-AT5G04760_ABA_ChIP_rep1-GSM2130957.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.bam SAMstats-AT5G04760_EtOH_ChIP_rep1-GSM2130958.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.bam SAMstats-AT5G04760_ABA_ChIP_rep2-GSM2130959.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.bam SAMstats-AT5G04760_EtOH_ChIP_rep2-GSM2130960.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.bam SAMstats-AT5G04760_ABA_ChIP_rep3-GSM2130961.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.bam SAMstats-AT5G04760_EtOH_ChIP_rep3-GSM2130962.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.bam SAMstats-AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.bam SAMstats-AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.bam SAMstats-AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.bam SAMstats-AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.bam SAMstats-AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.bam SAMstats-AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.bam SAMstats-AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.bam SAMstats-AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.bam SAMstats-AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.bam SAMstats-AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.bam SAMstats-AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.bam SAMstats-AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.bam SAMstats-AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.bam SAMstats-AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.bam SAMstats-AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.bam SAMstats-AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.bam SAMstats-AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.bam SAMstats-AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.bam SAMstats-Col0_mockChIP_rep1-GSM2130981.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.bam SAMstats-Col0_mockChIP_rep2-GSM2130982.unique -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Col0_mockChIP_rep1-GSM2130981/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Col0_mockChIP_rep2-GSM2130982/all.1x36mers.TAIR10.QC &
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chrM.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep1-GSM2130859/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep1-GSM2130860/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep2-GSM2130861/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep2-GSM2130862/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_ABA_ChIP_rep3-GSM2130863/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G47640_NFYB2_EtOH_ChIP_rep3-GSM2130864/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep1-GSM2130865/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep1-GSM2130866/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep2-GSM2130867/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep2-GSM2130868/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_ABA_ChIP_rep3-GSM2130869/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G49720_ABF1_EtOH_ChIP_rep3-GSM2130870/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep1-GSM2130871/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep1-GSM2130872/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep2-GSM2130873/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep2-GSM2130874/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_ABA_ChIP_rep3-GSM2130875/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46270_GBF3_EtOH_ChIP_rep3-GSM2130876/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep1-GSM2130877/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep1-GSM2130878/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_ABA_ChIP_rep2-GSM2130879/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G63790_ANAC102_EtOH_ChIP_rep2-GSM2130880/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep1-GSM2130881/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep1-GSM2130882/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep2-GSM2130883/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep2-GSM2130884/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_ABA_ChIP_rep3-GSM2130885/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G77450_ANAC032_EtOH_ChIP_rep3-GSM2130886/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep1-GSM2130887/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep1-GSM2130888/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep2-GSM2130889/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep2-GSM2130890/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_ABA_ChIP_rep3-GSM2130891/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G56170_NFYC2_EtOH_ChIP_rep3-GSM2130892/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep1-GSM2130893/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep1-GSM2130894/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep2-GSM2130895/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep2-GSM2130896/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_ABA_ChIP_rep3-GSM2130897/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G01120_GBF2_EtOH_ChIP_rep3-GSM2130898/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep1-GSM2130899/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep1-GSM2130900/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep2-GSM2130901/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep2-GSM2130902/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_ABA_ChIP_rep3-GSM2130903/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G37790_HAT22_EtOH_ChIP_rep3-GSM2130904/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep1-GSM2130905/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep1-GSM2130906/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep2-GSM2130907/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep2-GSM2130908/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_ABA_ChIP_rep3-GSM2130909/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G51140_FBH3_EtOH_ChIP_rep3-GSM2130910/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep1-GSM2130911/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep1-GSM2130912/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep2-GSM2130913/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep2-GSM2130914/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_ABA_ChIP_rep3-GSM2130915/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT1G22640_MYB3_EtOH_ChIP_rep3-GSM2130916/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep1-GSM2130917/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep1-GSM2130918/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep2-GSM2130919/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep2-GSM2130920/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_ABA_ChIP_rep3-GSM2130921/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G05410_DREB2A_EtOH_ChIP_rep3-GSM2130922/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep1-GSM2130923/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep1-GSM2130924/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep2-GSM2130925/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep2-GSM2130926/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_ABA_ChIP_rep3-GSM2130927/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G27410_RD26_EtOH_ChIP_rep3-GSM2130928/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep1-GSM2130929/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep1-GSM2130930/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep2-GSM2130931/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep2-GSM2130932/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_ABA_ChIP_rep3-GSM2130933/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G43840_HSFA6A_EtOH_ChIP_rep3-GSM2130934/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep1-GSM2130935/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep1-GSM2130936/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep2-GSM2130937/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep2-GSM2130938/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_ABA_ChIP_rep3-GSM2130939/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G67300_MYB44_EtOH_ChIP_rep3-GSM2130940/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep1-GSM2130941/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep1-GSM2130942/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep2-GSM2130943/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep2-GSM2130944/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_ABA_ChIP_rep3-GSM2130945/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G65310_HB5_EtOH_ChIP_rep3-GSM2130946/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep1-GSM2130947/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep1-GSM2130948/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep2-GSM2130949/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep2-GSM2130950/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_ABA_ChIP_rep3-GSM2130951/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G22430_HB6_EtOH_ChIP_rep3-GSM2130952/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep1-GSM2130953/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep1-GSM2130954/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_ABA_ChIP_rep2-GSM2130955/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04340_ZAT6_EtOH_ChIP_rep2-GSM2130956/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep1-GSM2130957/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep1-GSM2130958/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep2-GSM2130959/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep2-GSM2130960/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_ABA_ChIP_rep3-GSM2130961/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT5G04760_EtOH_ChIP_rep3-GSM2130962/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep1-GSM2130963/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep1-GSM2130964/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep2-GSM2130965/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep2-GSM2130966/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_ABA_ChIP_rep3-GSM2130967/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT2G46680_HB7_EtOH_ChIP_rep3-GSM2130968/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep1-GSM2130969/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep1-GSM2130970/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep2-GSM2130971/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep2-GSM2130972/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_ABA_ChIP_rep3-GSM2130973/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT3G19290_ABF4_EtOH_ChIP_rep3-GSM2130974/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep1-GSM2130975/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep1-GSM2130976/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep2-GSM2130977/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep2-GSM2130978/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_ABA_ChIP_rep3-GSM2130979/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes AT4G34000_ABF3_EtOH_ChIP_rep3-GSM2130980/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep1-GSM2130981/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Col0_mockChIP_rep2-GSM2130982/all.1x36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM