# R script for Peak Model
#  -- generated by MACS
p <- c(0.049777675863,0.0578115424459,0.0657242954622,0.0731929654011,0.0817112862503,0.08066163534,0.0807827489065,0.0813883167394,0.0810249760397,0.0798945827517,0.0798542115628,0.0801368098848,0.0807827489065,0.0812672031729,0.0811057184174,0.0813883167394,0.0811864607951,0.0805001505845,0.0804597793957,0.0810653472286,0.0805001505845,0.0798542115628,0.0792890149188,0.0797330979962,0.0795312420519,0.0800964386959,0.0807827489065,0.0813883167394,0.0811864607951,0.0809038624731,0.0814690591171,0.0813075743617,0.0813479455506,0.0810653472286,0.0811057184174,0.0806212641511,0.0798945827517,0.0792890149188,0.0800156963182,0.0796927268074,0.0794908708631,0.0798945827517,0.0798138403739,0.0796523556185,0.0797734691851,0.0793293861076,0.0796927268074,0.0799753251294,0.0794101284853,0.0801368098848,0.0806212641511,0.0804597793957,0.0807827489065,0.080944233662,0.0803386658291,0.0810249760397,0.081226831984,0.0811057184174,0.0814690591171,0.0811864607951,0.0804194082068,0.0809846048508,0.0802579234514,0.0798945827517,0.0805808929623,0.0801368098848,0.0798945827517,0.0797734691851,0.0795312420519,0.0792486437299,0.0796523556185,0.0794504996742,0.0796523556185,0.0799349539405,0.0788853030302,0.0786834470859,0.0784008487639,0.0788449318413,0.0788045606525,0.0793293861076,0.0789660454079,0.0790064165968,0.0791679013522,0.0797330979962,0.0805808929623,0.080944233662,0.0815498014949,0.0814286879283,0.0814690591171,0.0809846048508,0.081226831984,0.0810653472286,0.081226831984,0.0807827489065,0.0806212641511,0.0808634912843,0.0804597793957,0.080944233662,0.0809846048508,0.0811057184174,0.0811460896063,0.0812672031729,0.0809038624731,0.081509430306,0.0818727710057,0.0822764828943,0.0830839066715,0.0823975964609,0.0827609371606,0.0832453914269,0.0832050202381,0.0829224219161,0.0839720728264,0.0832857626158,0.0832453914269,0.0826801947829,0.0824379676498,0.0825590812163,0.0820342557612,0.0814286879283,0.0816305438726,0.0819938845723,0.0814690591171,0.081226831984,0.081226831984,0.0813479455506,0.0811864607951,0.0811864607951,0.081792028628,0.082357225272,0.0819938845723,0.0823975964609,0.0823168540832,0.0829627931049,0.0829627931049,0.0828416795383,0.0827609371606,0.0830031642938,0.0826801947829,0.0821149981389,0.08207462695,0.081792028628,0.0816305438726,0.0811057184174,0.080944233662,0.080944233662,0.0805405217734,0.0801368098848,0.0800156963182,0.0800156963182,0.0800964386959,0.0796927268074,0.0799349539405,0.0797734691851,0.0793697572965,0.0793697572965,0.0795716132408,0.0797734691851,0.0793697572965,0.0798945827517,0.0803386658291,0.080944233662,0.0804597793957,0.0814286879283,0.0815498014949,0.081509430306,0.0812672031729,0.0813479455506,0.0817516574392,0.0817112862503,0.0815901726837,0.081226831984,0.0815498014949,0.080944233662,0.081226831984,0.0808231200954,0.0810653472286,0.0805001505845,0.0802579234514,0.0800964386959,0.0798138403739,0.0792890149188,0.0790467877856,0.078925674219,0.0779567656864,0.0781182504419,0.078925674219,0.0792082725411,0.0791679013522,0.0788045606525,0.0786027047082,0.0795312420519,0.0796119844296,0.0796119844296,0.0801771810737,0.0806212641511,0.0800964386959,0.0799349539405,0.0803386658291,0.0805405217734,0.0811460896063,0.0806212641511,0.080379037018,0.0807827489065,0.0807020065288,0.0806212641511,0.0804194082068,0.0807827489065,0.0807020065288,0.0808634912843,0.0808231200954,0.0809038624731,0.0816709150614,0.0808231200954,0.0816709150614,0.0810653472286,0.0811460896063,0.0810653472286,0.0813883167394,0.0813479455506,0.0819938845723,0.0822361117055,0.0818727710057,0.0825590812163,0.0819131421946,0.0823975964609,0.0827609371606,0.0830031642938,0.0829224219161,0.0831646490492,0.0829627931049,0.0829224219161,0.0830435354826,0.0831646490492,0.0831242778604,0.0829224219161,0.0827609371606,0.0824783388386,0.0819535133835,0.0818323998169,0.0811460896063,0.0810249760397,0.0815901726837,0.0818727710057,0.0819131421946,0.0822361117055,0.0816709150614,0.0819535133835,0.0821149981389,0.0820342557612,0.0823975964609,0.0827205659718,0.0820342557612,0.0808231200954,0.0809038624731,0.0813883167394,0.0813883167394,0.0815498014949,0.0819131421946,0.0816709150614,0.0816709150614,0.0811057184174,0.0816305438726,0.0821957405166,0.0821149981389,0.08207462695,0.0821553693277,0.0818727710057,0.0822764828943,0.0828820507272,0.0821149981389,0.0818323998169,0.08207462695,0.0824783388386,0.0822361117055,0.0814690591171,0.081509430306,0.0817112862503,0.0815498014949,0.0815498014949,0.0818727710057,0.0822361117055,0.0814690591171,0.0815901726837,0.0823168540832,0.0829627931049,0.0834472473712,0.0838913304487,0.083810588071,0.0836491033155,0.0839720728264,0.0842546711484,0.0847391254147,0.084375784715,0.0839720728264,0.0842546711484,0.0840124440153,0.0829224219161,0.0831646490492,0.0830839066715,0.0827205659718,0.0822361117055,0.0819938845723,0.082357225272,0.0825994524052,0.0817516574392,0.0818323998169,0.0829627931049,0.0828416795383,0.0830839066715,0.0830435354826,0.0836894745044,0.0839317016375,0.0837702168821,0.0839720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m <- 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ycorr <- 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altd  <- c(0, 37, 99, 155, 172, 211, 226, 280, 314, 364, 435, 578, 593, 597)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('93-bZIP28-GSE94146/Heat_R1-GSM2471038/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 0,37,99,155,172,211,226,280,314,364,435,578,593,597',bty='n')
dev.off()