# R script for Peak Model
#  -- generated by MACS
p <- c(0.0339813086832,0.0397661163233,0.0453557310675,0.0512115179424,0.0568898567302,0.0571915184783,0.0572270080957,0.0572979873306,0.0574399458003,0.0575464146525,0.0575464146525,0.0572979873306,0.057333476948,0.0568898567302,0.0561090851469,0.0557719337813,0.0562155539991,0.0559848714859,0.0557719337813,0.0554170376071,0.0551863550939,0.0553992927984,0.0552573343287,0.0556832097378,0.0563930020863,0.0566769190256,0.056286533234,0.0562687884253,0.0559671266772,0.0563042780427,0.0566414294082,0.0570140703912,0.0571205392434,0.0567833878779,0.0572979873306,0.0569430911563,0.0571915184783,0.0575286698438,0.0580787589139,0.058380420662,0.0585223791317,0.0580610141052,0.0581497381487,0.0581497381487,0.0580432692965,0.0582029725749,0.058256207001,0.0584513998968,0.0583449310446,0.0577061179309,0.0572624977131,0.0577593523571,0.0579545452529,0.0581142485313,0.0583626758533,0.058628847984,0.0587885512624,0.0588062960711,0.0588772753059,0.0594451091847,0.0600661774896,0.0593918747586,0.059551578037,0.0596048124631,0.0595160884195,0.0598000053589,0.0601371567245,0.0598532397851,0.0600306878722,0.0598000053589,0.0598177501676,0.0606517561771,0.0608824386904,0.06102439716,0.0611841004385,0.0610953763949,0.0606162665597,0.0605807769423,0.0608114594555,0.0615035069953,0.0614857621866,0.0608292042642,0.0603146048116,0.0605275425161,0.0596757916979,0.0595693228457,0.0600661774896,0.0602791151942,0.0602436255767,0.0599419638286,0.0598000053589,0.0601371567245,0.0601549015332,0.0599419638286,0.0605630321335,0.0609711627339,0.0608469490729,0.0611308660123,0.0610066523513,0.0603678392377,0.0604033288551,0.0606872457945,0.0616986998911,0.0616809550824,0.0617164446998,0.0612373348646,0.0611131212036,0.0605275425161,0.0605807769423,0.0609356731165,0.0606517561771,0.0606340113684,0.0601549015332,0.0610598867775,0.0613615485256,0.0617696791259,0.0617341895085,0.0619826168305,0.0622842785786,0.062443981857,0.0630650501619,0.0631360293968,0.0631715190142,0.0626391747528,0.0627101539877,0.0634554359536,0.0636861184668,0.0640587594498,0.0640587594498,0.0642184627282,0.064413655624,0.0647330621808,0.0649992343115,0.0654428545293,0.0654251097206,0.0656025578077,0.0659397091732,0.0657445162774,0.0657977507035,0.0662946053475,0.0661349020691,0.0660816676429,0.0662236261126,0.0664010741997,0.0667914599914,0.0660106884081,0.0657977507035,0.0659397091732,0.066383329391,0.0660106884081,0.0665785222869,0.0662058813039,0.0662768605388,0.0661171572604,0.0659574539819,0.0664720534346,0.0670221425047,0.0673592938702,0.0671641009743,0.0675367419573,0.0674835075312,0.0680158517925,0.0683707479668,0.0684949616277,0.0686724097149,0.0684417272016,0.0685659408626,0.0690450506978,0.0691870091675,0.0692402435936,0.069399946872,0.0699677807508,0.0703226769251,0.0709792348474,0.0713873654478,0.0715648135349,0.0719019649004,0.0720084337527,0.0724165643531,0.072664991675,0.0730553774667,0.0736054665368,0.0739248730936,0.0739248730936,0.0740490867545,0.0748121135292,0.0748121135292,0.0752734785557,0.0756993539647,0.0756993539647,0.0760897397564,0.0755041610689,0.0753267129818,0.0755928851125,0.075930036478,0.0760897397564,0.0760897397564,0.0761252293738,0.0758235676257,0.076302677461,0.0763204222697,0.0770124698094,0.0771366834704,0.0771189386617,0.077225407514,0.0776335381143,0.0781303927583,0.0783433304628,0.0791418468548,0.0796387014988,0.0802952594211,0.0802065353776,0.0807388796389,0.0815196512222,0.0822471883794,0.0827617878321,0.083258642476,0.084181372529,0.0845895031294,0.0852638058604,0.0857251708869,0.08664790094,0.0867721146009,0.0871625003926,0.0870382867316,0.0869140730706,0.0874996517581,0.087322203671,0.0875351413756,0.087570630993,0.0872512244362,0.0874996517581,0.0885998298983,0.0891321741596,0.0898774561255,0.0906582277088,0.0910131238831,0.0916696818054,0.0925391774323,0.0933909282505,0.0942071894512,0.094650809669,0.0945443408167,0.0948105129474,0.0949702162258,0.0953606020175,0.0952008987391,0.0951476643129,0.0947217889039,0.0948814921823,0.0956800085743,0.095821967044,0.0962478424531,0.0964075457315,0.0972238069322,0.0972592965496,0.0978093856197,0.0984659435421,0.0990160326121,0.0991757358905,0.0992999495515,0.099885528239,0.100346893266,0.10110992004,0.101322857745,0.102014905284,0.103008614572,0.103647427686,0.104108792712,0.104747605826,0.104800840252,0.105155736426,0.105688080688,0.10593650801,0.106397873036,0.106433362654,0.106131700906,0.106522086697,0.106610810741,0.107302858281,0.107906181777,0.107906181777,0.108562739699,0.108846656638,0.108917635873,0.109574193796,0.11062113751,0.110638882318,0.111384164284,0.111401909093,0.111916508546,0.112484342424,0.11241336319,0.112502087233,0.113069921112,0.113353838051,0.113105410729,0.113584520565,0.114134609635,0.114560485044,0.114862146792,0.115270277392,0.115181553349,0.115909090506,0.116299476297,0.11667211728,0.117062503072,0.117293185585,0.117541612907,0.117772295421,0.118180426021,0.118517577386,0.119227369735,0.119227369735,0.119227369735,0.119209624926,0.119209624926,0.119564521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m <- 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ycorr <- 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altd  <- c(294)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('82-FUL-GSE108455/FUL-IM-rep1-GSM2898768/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 294',bty='n')
dev.off()