# R script for Peak Model
#  -- generated by MACS
p <- c(0.0209802255853,0.0242928927829,0.0283417082468,0.0325377533638,0.0366601836543,0.0362921095212,0.0371754874406,0.0379852505333,0.037101872614,0.0372491022672,0.0363657243478,0.0365865688277,0.036144879868,0.0354087316018,0.0346725833357,0.034598968509,0.0329058274969,0.0332002868034,0.0331266719767,0.0333475164566,0.0341572795494,0.0341572795494,0.0346725833357,0.0359976502147,0.0354087316018,0.0362921095212,0.0364393391744,0.0359976502147,0.0364393391744,0.0364393391744,0.0359240353881,0.0359976502147,0.0353351167752,0.0334211312832,0.034230894376,0.0341572795494,0.0351142722954,0.0352615019486,0.0347461981623,0.0359976502147,0.0367337984809,0.037469946747,0.0388686284527,0.0396783915455,0.0394575470656,0.039383932239,0.0387213987995,0.0394575470656,0.0401200805052,0.0392367025858,0.0387213987995,0.0385005543196,0.0369546429607,0.0378380208801,0.0387950136261,0.0390158581059,0.0401936953318,0.0385741691463,0.0383533246664,0.0385741691463,0.0385741691463,0.0376907912269,0.0385741691463,0.0377644060535,0.0371754874406,0.0371754874406,0.0362921095212,0.0367337984809,0.0372491022672,0.0372491022672,0.0376907912269,0.0385741691463,0.0379852505333,0.037101872614,0.037469946747,0.0373227170938,0.0366601836543,0.0369546429607,0.0372491022672,0.0373963319204,0.0368810281341,0.0368074133075,0.0371754874406,0.0377644060535,0.036512954001,0.0368074133075,0.0373963319204,0.038426939493,0.0381324801866,0.03805886536,0.0389422432793,0.0385741691463,0.0379852505333,0.0379852505333,0.0390158581059,0.0390158581059,0.0398256211987,0.0387950136261,0.0385005543196,0.0387950136261,0.0385741691463,0.0385741691463,0.0382060950132,0.0390158581059,0.0396783915455,0.0396047767189,0.0398992360253,0.0397520063721,0.0401200805052,0.0401936953318,0.0396783915455,0.0401936953318,0.0420340659972,0.0413715325576,0.0396047767189,0.0398256211987,0.0390894729326,0.0404881546382,0.0404881546382,0.0405617694649,0.0410770732512,0.0414451473842,0.0398992360253,0.0401936953318,0.0411506880778,0.0418868363439,0.0424021401302,0.040340924985,0.0408562287713,0.0399728508519,0.0402673101584,0.0392367025858,0.0398256211987,0.0393103174124,0.0396047767189,0.039383932239,0.0390894729326,0.0405617694649,0.0401936953318,0.0410770732512,0.0402673101584,0.0404881546382,0.0406353842915,0.0410770732512,0.0408562287713,0.0411506880778,0.0409298435979,0.0404881546382,0.0409298435979,0.0416659918641,0.042254910477,0.0428438290899,0.0432855180496,0.0440216663158,0.0438744366625,0.0432855180496,0.0438744366625,0.0448314294085,0.0454939628481,0.0450522738884,0.0450522738884,0.0454939628481,0.0455675776747,0.0461564962876,0.0474815631667,0.0471871038602,0.0475551779933,0.0474079483401,0.0465981852473,0.0465981852473,0.0471871038602,0.0469662593804,0.0475551779933,0.0477760224731,0.0485857855659,0.0488066300457,0.0482177114328,0.0486594003925,0.0491747041788,0.0488802448724,0.049321933832,0.0496900079651,0.0488066300457,0.0476287928199,0.0460092666344,0.0474079483401,0.0478496372997,0.0479232521264,0.047039874207,0.0469662593804,0.0473343335134,0.0468190297271,0.047039874207,0.0482177114328,0.0476287928199,0.0474815631667,0.047039874207,0.0460092666344,0.0477024076465,0.0480704817796,0.047039874207,0.0475551779933,0.0479232521264,0.0477760224731,0.0486594003925,0.0480704817796,0.0492483190054,0.0503525414047,0.0481440966062,0.0490274745256,0.0501316969248,0.0504997710579,0.0504261562313,0.048953859699,0.0498372376184,0.0495427783119,0.0485121707393,0.0477760224731,0.0485121707393,0.047996866953,0.047996866953,0.0475551779933,0.0485857855659,0.0501316969248,0.0495427783119,0.0510150748442,0.0519720675902,0.0522665268966,0.0537388234289,0.0535915937757,0.0529290603362,0.0526346010297,0.0524873713765,0.0526346010297,0.0522665268966,0.0526346010297,0.0527082158563,0.0534443641225,0.0530026751628,0.0529290603362,0.0523401417233,0.0530026751628,0.0535915937757,0.0529290603362,0.0540332827354,0.0525609862031,0.0529290603362,0.0540332827354,0.0536652086023,0.0547694310016,0.0558000385742,0.0571251054532,0.0571251054532,0.0588182464654,0.0597016243848,0.059848854038,0.0596280095581,0.0585237871589,0.0587446316388,0.0582293278525,0.0586710168122,0.0573459499331,0.0569778758,0.0556528089209,0.0552111199612,0.0562417275339,0.0566834164935,0.056020883054,0.0571251054532,0.0576404092395,0.0582293278525,0.0594071650783,0.0591127057718,0.0605113874775,0.0618364543566,0.0626462174494,0.063676825022,0.0648546622478,0.0644129732881,0.0647810474212,0.0637504398486,0.0631615212357,0.0639712843284,0.0637504398486,0.0624989877961,0.0621309136631,0.0597752392114,0.0600696985178,0.0606586171308,0.0615419950501,0.0624989877961,0.0642657436349,0.064044899155,0.0636032101954,0.0639712843284,0.0636032101954,0.0660324994737,0.0674311811793,0.066915877393,0.0658116549938,0.0656644253406,0.0667686477398,0.0670631070463,0.0683145590987,0.0689034777116,0.0703757742439,0.0692715518447,0.0698604704576,0.0708910780302,0.071700841123,0.0727314486956,0.0716272262964,0.0725106042158,0.0736884414416,0.0739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m <- 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ycorr <- 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altd  <- c(197)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('76-EBS-GSE104368/EBS-ChIPSeq-3-GSM2796113/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 197',bty='n')
dev.off()