# R script for Peak Model
#  -- generated by MACS
p <- c(0.0475356054522,0.0555022557703,0.0636954459078,0.0713600431332,0.0796287465439,0.0795909899073,0.0797420164536,0.0800063129096,0.0805349058217,0.0806481757315,0.0803838792754,0.0800818261828,0.0795154766341,0.0797420164536,0.0795154766341,0.0792511801781,0.0791756669049,0.0789491270854,0.0784582908099,0.0784205341733,0.0789491270854,0.0791001536318,0.079704259817,0.0796665031804,0.0801573394559,0.0805349058217,0.0811767686436,0.0816298482825,0.0814410650996,0.0817808748288,0.0816298482825,0.0820451712849,0.0815543350094,0.0817808748288,0.0814788217362,0.0812522819167,0.0809502288241,0.0807992022778,0.0812900385533,0.0814410650996,0.0812522819167,0.0810634987338,0.081403308463,0.0814410650996,0.0813277951899,0.081856388102,0.0817431181922,0.0815920916459,0.0810634987338,0.081139012007,0.0811012553704,0.0810634987338,0.0807236890046,0.0808747155509,0.0809879854607,0.0802706093657,0.0801950960925,0.0805349058217,0.0809124721875,0.0807236890046,0.0805349058217,0.0808747155509,0.081403308463,0.0812522819167,0.0812522819167,0.0815920916459,0.0813655518265,0.0811012553704,0.0808747155509,0.0804971491852,0.0807992022778,0.0805349058217,0.0798552863633,0.0795154766341,0.0792134235415,0.078986883722,0.0791001536318,0.0791379102683,0.0788358571757,0.078722587266,0.078269507627,0.0776654014418,0.0777786713515,0.0780807244441,0.0780807244441,0.0779674545344,0.0777786713515,0.078005211171,0.0781184810807,0.0786470739928,0.0788358571757,0.0792889368146,0.0796287465439,0.0797797730902,0.0799307996365,0.080421635912,0.0807614456412,0.0810257420973,0.0810257420973,0.0807614456412,0.0808369589144,0.0810634987338,0.0809502288241,0.0811767686436,0.0810634987338,0.0812145252801,0.0811767686436,0.0809124721875,0.081403308463,0.0815543350094,0.0821961978312,0.0820829279214,0.0824227376507,0.0817808748288,0.0818186314654,0.0816298482825,0.0815920916459,0.0814410650996,0.0812145252801,0.081139012007,0.080685932368,0.0809124721875,0.0805726624583,0.0810257420973,0.0815543350094,0.0815165783728,0.0817431181922,0.0817431181922,0.0817808748288,0.0817431181922,0.0819696580117,0.0821961978312,0.0820451712849,0.081856388102,0.0817431181922,0.0823472243775,0.0821584411946,0.0820829279214,0.082120684558,0.0823849810141,0.0820451712849,0.081856388102,0.0817808748288,0.081856388102,0.0819696580117,0.0811012553704,0.0809502288241,0.081403308463,0.0812522819167,0.0810634987338,0.081139012007,0.0810634987338,0.0816676049191,0.0812522819167,0.0807236890046,0.0808369589144,0.081139012007,0.0804971491852,0.0804971491852,0.0804971491852,0.0802706093657,0.0802706093657,0.0800818261828,0.0803083660023,0.0806104190949,0.0807992022778,0.0809879854607,0.0809879854607,0.0809879854607,0.0810634987338,0.081856388102,0.0817808748288,0.0817431181922,0.0820074146483,0.0812522819167,0.0812522819167,0.0812145252801,0.0812522819167,0.0813277951899,0.0811012553704,0.0804971491852,0.0801950960925,0.0801195828194,0.0799685562731,0.0803083660023,0.0800818261828,0.0795154766341,0.0798552863633,0.0801950960925,0.0806104190949,0.080685932368,0.0809879854607,0.0811767686436,0.0811767686436,0.0813655518265,0.0815165783728,0.0819696580117,0.0817431181922,0.0815543350094,0.081856388102,0.0817053615557,0.0815920916459,0.0815920916459,0.0817431181922,0.0817431181922,0.0816676049191,0.0813655518265,0.0813277951899,0.0812900385533,0.0806481757315,0.0807236890046,0.0804971491852,0.0801950960925,0.080421635912,0.0803083660023,0.080421635912,0.0806104190949,0.0807614456412,0.0807992022778,0.0807992022778,0.0804971491852,0.0807992022778,0.0807236890046,0.0805349058217,0.0809124721875,0.0806481757315,0.0807992022778,0.0804971491852,0.0801195828194,0.0803461226388,0.0804971491852,0.0803838792754,0.0803461226388,0.079704259817,0.0795154766341,0.0795532332707,0.0794022067244,0.0795909899073,0.0800818261828,0.0799307996365,0.0798930429999,0.0794777199975,0.0797797730902,0.0803083660023,0.0805726624583,0.0806104190949,0.080685932368,0.0807614456412,0.0805726624583,0.0804971491852,0.0809502288241,0.0818186314654,0.0815543350094,0.0818186314654,0.0815165783728,0.0817053615557,0.0817053615557,0.0817053615557,0.0815543350094,0.0820451712849,0.0819319013751,0.0818186314654,0.0820829279214,0.0821961978312,0.0821584411946,0.0822717111043,0.0819319013751,0.0820451712849,0.0826870341067,0.082573764197,0.0822339544678,0.081856388102,0.0820451712849,0.0817431181922,0.0814410650996,0.0808747155509,0.0810257420973,0.0810634987338,0.0808747155509,0.0806481757315,0.0804593925486,0.0805349058217,0.0801950960925,0.0802328527291,0.0806481757315,0.0806481757315,0.0807614456412,0.0806104190949,0.0804593925486,0.0803461226388,0.0809124721875,0.0812900385533,0.0812900385533,0.0809879854607,0.0812522819167,0.0820074146483,0.0817053615557,0.0820074146483,0.0823094677409,0.0826492774701,0.0829513305628,0.0827625473799,0.0832533836554,0.083555436748,0.0835931933846,0.0836309500212,0.084272812843,0.0839707597504,0.0836309500212,0.0834799234748,0.0831778703822,0.0837819765675,0.0840462730235,0.084272812843,0.0847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m <- 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ycorr <- 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altd  <- c(0, 32, 67, 90, 108, 137, 190, 218, 266, 384, 432, 447, 468, 510, 515, 557, 573, 592)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('75-REF6-GSE65329/HA_REF6-ZnF-HA-GSM1592578/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 0,32,67,90,108,137,190,218,266,384,432,447,468,510,515,557,573,592',bty='n')
dev.off()