python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam SAMstats-SVP_FLC_FRI_rep1-GSM1325791 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-SVP_FLC_FRI_rep1-GSM1325791.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam SAMstats-SVP_FLC_FRI_rep2-GSM1325792 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-SVP_FLC_FRI_rep2-GSM1325792.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam SAMstats-SVP_FLC_FRI_rep3-GSM1325793 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-SVP_FLC_FRI_rep3-GSM1325793.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam SAMstats-svp-41_FLC_FRI_rep1-GSM1325794 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-svp-41_FLC_FRI_rep1-GSM1325794.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam SAMstats-svp-41_FLC_FRI_rep2-GSM1325795 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-svp-41_FLC_FRI_rep2-GSM1325795.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam SAMstats-svp-41_FLC_FRI_rep3-GSM1325796 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-svp-41_FLC_FRI_rep3-GSM1325796.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
python ~/code/SAMstats.py Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.chrM+chloroplast.k3m2 -bam ~/genomes/TAIR10/TAIR10.chrom.sizes samtools
Rscript ~/code/spp/spp_package/run_spp.R -c=pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.QC &
Rscript ~/code/spp/spp_package/run_spp.R -c=Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.QC &
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.TAIR10.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
python ~/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.bam ~/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802/all.1x36mers.chrM+chloroplast.k3m2.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM