# R script for Peak Model
#  -- generated by MACS
p <- c(0.0460646402064,0.0533198210389,0.0609204866729,0.0692121219101,0.0765824643431,0.075661171539,0.075661171539,0.0753156867374,0.0760066563405,0.0763521411421,0.0765824643431,0.0762369795415,0.0768127875441,0.0775037571472,0.0771582723457,0.0764673027426,0.0750853635364,0.0753156867374,0.076121817941,0.0775037571472,0.0765824643431,0.0775037571472,0.0753156867374,0.0727821315261,0.0739337475312,0.0747398787348,0.075661171539,0.076121817941,0.0749702019359,0.0741640707323,0.0743943939333,0.0735882627297,0.0746247171343,0.0768127875441,0.0760066563405,0.0763521411421,0.0762369795415,0.0753156867374,0.0750853635364,0.0747398787348,0.0768127875441,0.0784250499513,0.0793463427555,0.0784250499513,0.0799221507581,0.0795766659565,0.0786553731524,0.079231181155,0.0795766659565,0.0811889283637,0.0801524739591,0.079461504356,0.0802676355596,0.0806131203611,0.0795766659565,0.0799221507581,0.0811889283637,0.0821102211679,0.0825708675699,0.0808434435622,0.0808434435622,0.0816495747658,0.0821102211679,0.0818798979668,0.0817647363663,0.0821102211679,0.083031513972,0.0822253827684,0.0810737667632,0.0809586051627,0.079691827557,0.0778492419488,0.0763521411421,0.076121817941,0.0764673027426,0.0752005251369,0.0732427779281,0.0728972931266,0.0742792323328,0.0740489091317,0.0738185859307,0.0738185859307,0.0732427779281,0.0722063235235,0.0707092227168,0.0716305155209,0.0717456771214,0.0717456771214,0.0709395459178,0.0715153539204,0.0710547075183,0.0711698691188,0.0718608387219,0.0719760003225,0.0731276163276,0.0718608387219,0.0722063235235,0.0724366467245,0.0716305155209,0.0705940611163,0.0703637379152,0.0704788995157,0.0692121219101,0.068521152307,0.0680605059049,0.0686363139075,0.0678301827039,0.0681756675054,0.068981798709,0.0686363139075,0.0699030915132,0.0704788995157,0.0717456771214,0.0748550403354,0.0753156867374,0.0750853635364,0.0754308483379,0.0746247171343,0.0748550403354,0.0753156867374,0.0747398787348,0.0746247171343,0.0733579395286,0.0712850307194,0.0708243843173,0.0707092227168,0.0717456771214,0.072321485124,0.0714001923199,0.0715153539204,0.0710547075183,0.0709395459178,0.0704788995157,0.0704788995157,0.0710547075183,0.0716305155209,0.0701334147142,0.0702485763147,0.0715153539204,0.0714001923199,0.0726669699255,0.0724366467245,0.0747398787348,0.0760066563405,0.0764673027426,0.0763521411421,0.0770431107452,0.0766976259436,0.0773885955467,0.0768127875441,0.0773885955467,0.0773885955467,0.07589149474,0.0737034243302,0.0719760003225,0.0722063235235,0.072551808325,0.0717456771214,0.0690969603096,0.0702485763147,0.068521152307,0.0684059907065,0.0695576067116,0.0710547075183,0.0708243843173,0.0708243843173,0.0703637379152,0.0702485763147,0.0726669699255,0.0726669699255,0.0732427779281,0.0727821315261,0.0702485763147,0.0705940611163,0.0718608387219,0.0732427779281,0.0730124547271,0.0726669699255,0.0709395459178,0.0696727683121,0.0707092227168,0.0707092227168,0.0731276163276,0.072091161923,0.0714001923199,0.0695576067116,0.0703637379152,0.0707092227168,0.0707092227168,0.0718608387219,0.0704788995157,0.0714001923199,0.0693272835106,0.0694424451111,0.0699030915132,0.0693272835106,0.0692121219101,0.0695576067116,0.0697879299126,0.0696727683121,0.0699030915132,0.0688666371085,0.0711698691188,0.0707092227168,0.0702485763147,0.0716305155209,0.0709395459178,0.0704788995157,0.0704788995157,0.0703637379152,0.0714001923199,0.0715153539204,0.0695576067116,0.0693272835106,0.0699030915132,0.0704788995157,0.072091161923,0.0743943939333,0.0743943939333,0.0740489091317,0.0727821315261,0.0730124547271,0.0737034243302,0.0747398787348,0.0747398787348,0.0737034243302,0.0726669699255,0.072551808325,0.0730124547271,0.0730124547271,0.0730124547271,0.072321485124,0.0730124547271,0.0732427779281,0.0741640707323,0.0733579395286,0.0739337475312,0.0727821315261,0.0715153539204,0.0716305155209,0.072091161923,0.072091161923,0.0714001923199,0.0711698691188,0.0716305155209,0.0726669699255,0.0719760003225,0.0719760003225,0.0726669699255,0.0731276163276,0.072321485124,0.0734731011292,0.0737034243302,0.0733579395286,0.072091161923,0.0704788995157,0.0702485763147,0.0704788995157,0.0710547075183,0.0702485763147,0.0702485763147,0.0709395459178,0.0717456771214,0.072091161923,0.0703637379152,0.0719760003225,0.0728972931266,0.0719760003225,0.0717456771214,0.072321485124,0.0731276163276,0.0722063235235,0.072551808325,0.0716305155209,0.0742792323328,0.0732427779281,0.0724366467245,0.0727821315261,0.0743943939333,0.0743943939333,0.0742792323328,0.0747398787348,0.0732427779281,0.0733579395286,0.0716305155209,0.0722063235235,0.0719760003225,0.0703637379152,0.0680605059049,0.0669088898998,0.0659875970956,0.0658724354951,0.0662179202967,0.0672543747013,0.0671392131008,0.0669088898998,0.0677150211034,0.0694424451111,0.0702485763147,0.0704788995157,0.0716305155209,0.0722063235235,0.0727821315261,0.0732427779281,0.0746247171343,0.0760066563405,0.076121817941,0.0757763331395,0.0762369795415,0.0773885955467,0.0768127875441,0.0771582723457,0.0776189187477,0.0776189187477,0.0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m <- 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ycorr <- 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altd  <- c(142)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('43-IBL1-GSE51120/IBL1-ChIP-Seq-GSM1239089/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 142',bty='n')
dev.off()