# R script for Peak Model
#  -- generated by MACS
p <- c(0.0409288923389,0.0479197019641,0.0546444254099,0.0612482005922,0.0683115791755,0.0681180619541,0.0682631998701,0.0683115791755,0.0690856480614,0.0686018550077,0.0688679411872,0.0684083377862,0.0686018550077,0.0688921308399,0.0689405101453,0.0692791652828,0.0689405101453,0.0689888894506,0.0686986136184,0.0689405101453,0.0686502343131,0.0690130791033,0.0688437515345,0.0687228032711,0.0687469929238,0.0684809067443,0.0687228032711,0.0682390102175,0.0678519757745,0.067053717236,0.0673681827209,0.0670053379307,0.0670779068887,0.0673681827209,0.0671746654994,0.0672230448048,0.0672472344575,0.0681180619541,0.0688195618818,0.0695210618096,0.0694243031989,0.069496872157,0.0695936307677,0.0694484928516,0.0695936307677,0.0696420100731,0.0699322859052,0.0693033549355,0.0687469929238,0.0688679411872,0.0689163204926,0.069569441115,0.0697145790311,0.0694001135462,0.0691824066721,0.0693275445882,0.0691582170194,0.0688437515345,0.0689888894506,0.0689405101453,0.0687953722292,0.0682873895228,0.0680938723014,0.0679003550799,0.0678035964692,0.0677068378585,0.0679487343853,0.0685292860497,0.0683841481336,0.0683357688282,0.0681422516067,0.0681906309121,0.0680213033433,0.0680696826487,0.0679971136906,0.0676826482058,0.0676584585531,0.0676826482058,0.0680696826487,0.0681906309121,0.0683115791755,0.0684325274389,0.0685292860497,0.0688437515345,0.0687469929238,0.0690130791033,0.0688195618818,0.0689646997979,0.0689888894506,0.068577665355,0.0692307859775,0.0695452514623,0.0696178204204,0.0697387686838,0.0700532341687,0.070101613474,0.0704886479169,0.0701983720848,0.0701499927794,0.070561216875,0.0702467513901,0.0698355272945,0.070029044516,0.0697387686838,0.070101613474,0.0705854065277,0.0703918893062,0.0705128375696,0.0706095961804,0.0702709410428,0.0706095961804,0.0708273030545,0.0709482513179,0.0714562340242,0.0709966306233,0.0705128375696,0.0707547340965,0.071020820276,0.0708998720125,0.0715771822877,0.0714804236769,0.0717948891618,0.0714804236769,0.0714562340242,0.0717223202038,0.0715046133296,0.0713352857608,0.0710450099286,0.0712385271501,0.0706579754857,0.0703676996535,0.0700532341687,0.070029044516,0.0699080962526,0.0698113376418,0.070029044516,0.0696661997257,0.0700774238213,0.0700048548633,0.0700774238213,0.070029044516,0.0699806652106,0.0703435100008,0.070633785833,0.0703193203482,0.0704402686116,0.070633785833,0.0699806652106,0.070101613474,0.0708031134018,0.0704644582643,0.0703435100008,0.0699806652106,0.0697629583365,0.0698839065999,0.0700774238213,0.0701741824321,0.0706095961804,0.0703918893062,0.0698113376418,0.0700774238213,0.0704644582643,0.0706821651384,0.0707305444438,0.0713594754135,0.0708273030545,0.0709240616652,0.071093389234,0.0713110961082,0.0712385271501,0.0715288029823,0.0713110961082,0.0717948891618,0.072157733952,0.0723754408262,0.0729076131852,0.0730527511013,0.0726415270057,0.072617337353,0.0727382856164,0.0731253200593,0.0733672165862,0.0731978890174,0.0732946476281,0.0726415270057,0.0724963890896,0.0722303029101,0.0725689580476,0.0729801821432,0.073076940754,0.0727382856164,0.0723028718681,0.0721093546467,0.0720609753413,0.0721335442994,0.072544768395,0.0728108545745,0.0728108545745,0.0723512511735,0.0722786822155,0.0722303029101,0.0730527511013,0.0732220786701,0.0731978890174,0.0735607338076,0.0735365441549,0.0732462683228,0.0732946476281,0.0740929061666,0.0740203372086,0.0748185957471,0.0746492681783,0.0747702164418,0.0747702164418,0.074600888873,0.0744315613042,0.0745041302622,0.0744799406096,0.0738268199871,0.074068716514,0.0734397855442,0.0734881648496,0.0733188372808,0.0731736993647,0.0734639751969,0.0734881648496,0.073609113113,0.073609113113,0.0735365441549,0.0733914062389,0.0735123545023,0.0736574924184,0.0734639751969,0.0735849234603,0.0734155958915,0.073076940754,0.0737058717237,0.0737784406818,0.0743348026935,0.074141285472,0.0739235785979,0.0737784406818,0.0739719579032,0.0741654751247,0.074600888873,0.0755442853276,0.0750846819266,0.0752298198427,0.0751572508847,0.0757861818544,0.0766811990037,0.0769230955305,0.0772133713627,0.0773101299734,0.0774068885842,0.0770924230993,0.0770682334466,0.0776004058056,0.077648785111,0.0777455437217,0.0773343196261,0.0770682334466,0.0771649920573,0.0776245954583,0.0774552678895,0.0776004058056,0.0779632505959,0.07818095747,0.0784228539968,0.0784712333022,0.0783260953861,0.0790517849666,0.079245302188,0.0788340780924,0.0791243539246,0.0798500435051,0.0800919400319,0.0800435607266,0.0803096469061,0.0803096469061,0.0805515434329,0.0798500435051,0.0801161296846,0.0806724916963,0.0816642674563,0.0808901985704,0.0810353364865,0.0809627675285,0.0800677503792,0.080237077948,0.0807934399597,0.0816158881509,0.0819061639831,0.0818094053724,0.0807934399597,0.0811079054446,0.081228853708,0.0809385778758,0.0818577846777,0.0822690087733,0.0820996812046,0.0827769914797,0.0824867156475,0.0830430776592,0.0835510603655,0.0836720086289,0.0836961982816,0.0841558016826,0.0843251292514,0.0843735085567,0.0851233877899,0.0848331119577,0.085268525706,0.085341094664,0.0854862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m <- 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ycorr <- 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altd  <- c(163)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('25-KAN1-GSE48081/KAN1-FLAG-replicate-1-GSM1167537/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 163',bty='n')
dev.off()