# R script for Peak Model
#  -- generated by MACS
p <- c(0.0424993735798,0.0497896092002,0.0574038552926,0.064370080441,0.0716603160614,0.0718223212974,0.0712283020987,0.0718763230428,0.0732263666762,0.0732803684215,0.0737123823842,0.0736043788935,0.0729023562042,0.0730643614402,0.0737123823842,0.0739823911109,0.0740903946016,0.0733343701668,0.0724703422415,0.0712823038441,0.0713903073347,0.0718763230428,0.0724703422415,0.0727403509681,0.0721463317694,0.0720383282788,0.0721463317694,0.0728483544588,0.0734423736575,0.0746844138003,0.0745764103096,0.0749544225269,0.0748464190363,0.0751164277629,0.075278432999,0.0747924172909,0.0748464190363,0.0752244312536,0.0750084242723,0.0745764103096,0.0748464190363,0.0744144050736,0.0748464190363,0.0745224085642,0.0739823911109,0.0749004207816,0.0747924172909,0.0732803684215,0.0732803684215,0.0731723649308,0.0734423736575,0.0730643614402,0.0730103596948,0.0729563579495,0.0733883719122,0.0731183631855,0.0735503771482,0.0749544225269,0.0755484417256,0.0757104469616,0.0753864364896,0.0754944399803,0.0748464190363,0.0747924172909,0.0747924172909,0.0752244312536,0.0754944399803,0.075278432999,0.0752244312536,0.0756564452163,0.075602443471,0.0752244312536,0.075764448707,0.0758724521977,0.0761964626697,0.0756564452163,0.0752244312536,0.075440438235,0.075764448707,0.0757104469616,0.0756564452163,0.076736480123,0.0768444836137,0.0773845010671,0.0773845010671,0.0773304993217,0.0776005080484,0.0773304993217,0.0771144923404,0.0763584679057,0.0763044661603,0.0760344574337,0.075926453943,0.0751164277629,0.0746844138003,0.0751164277629,0.0753864364896,0.0760344574337,0.076088459179,0.0766824783777,0.0770064888497,0.076736480123,0.076898485359,0.0774385028124,0.0776005080484,0.0773304993217,0.0766284766324,0.0761424609243,0.075602443471,0.0758184504523,0.0763584679057,0.0763584679057,0.076088459179,0.0759804556883,0.076574474887,0.0763044661603,0.0766824783777,0.0769524871044,0.0775465063031,0.0771684940857,0.0766824783777,0.076574474887,0.0771684940857,0.0774385028124,0.0773845010671,0.0780325220111,0.0780865237564,0.0778705167751,0.0778705167751,0.0778705167751,0.0779785202658,0.0785185377191,0.0783565324831,0.0787345447005,0.0785725394645,0.0786805429551,0.0783025307378,0.0786265412098,0.0784105342285,0.0786265412098,0.0788425481912,0.0788425481912,0.0787885464458,0.0787345447005,0.0791125569178,0.0785725394645,0.0788425481912,0.0785725394645,0.0784105342285,0.0779785202658,0.0775465063031,0.0776005080484,0.0776005080484,0.0771144923404,0.0766284766324,0.0772764975764,0.0780325220111,0.0786265412098,0.0790045534272,0.0790045534272,0.0799225830979,0.0798685813525,0.0792205604085,0.0789505516818,0.0794905691352,0.0793285638992,0.0788425481912,0.0777085115391,0.0773845010671,0.0778705167751,0.0765204731417,0.0758724521977,0.076250464415,0.076574474887,0.0763584679057,0.0760344574337,0.0760344574337,0.076736480123,0.0771144923404,0.0767904818684,0.0777625132844,0.0789505516818,0.0781405255018,0.0781405255018,0.0777625132844,0.0776545097938,0.0768444836137,0.0766284766324,0.076574474887,0.0772764975764,0.076736480123,0.076088459179,0.0774925045577,0.0778705167751,0.0783565324831,0.0784645359738,0.0787885464458,0.0783025307378,0.0775465063031,0.0773845010671,0.0779245185204,0.0778165150298,0.0773304993217,0.0776005080484,0.0767904818684,0.076574474887,0.0771144923404,0.0780325220111,0.0786265412098,0.0783565324831,0.0773304993217,0.0774925045577,0.0778705167751,0.0779245185204,0.0784105342285,0.0783565324831,0.0780325220111,0.0769524871044,0.076898485359,0.0772764975764,0.0779785202658,0.0779245185204,0.0777085115391,0.076412469651,0.0761424609243,0.0766824783777,0.076736480123,0.0766284766324,0.0772764975764,0.0770604905951,0.0761424609243,0.075764448707,0.075440438235,0.0765204731417,0.0763044661603,0.0760344574337,0.0761424609243,0.0773304993217,0.0766284766324,0.076250464415,0.076574474887,0.076412469651,0.0773304993217,0.0770064888497,0.0774925045577,0.0776005080484,0.0777625132844,0.0769524871044,0.0764664713964,0.0767904818684,0.0771684940857,0.0777625132844,0.0771144923404,0.0769524871044,0.0779785202658,0.0783025307378,0.0781945272471,0.0785725394645,0.0788965499365,0.0788425481912,0.0791125569178,0.0787345447005,0.0783565324831,0.0782485289925,0.0776005080484,0.0776005080484,0.0773845010671,0.0779245185204,0.0785725394645,0.0786265412098,0.0792745621538,0.0795985726259,0.0799765848432,0.0808946145139,0.0806786075326,0.0801925918246,0.0808406127686,0.0799225830979,0.0805166022966,0.0809486162593,0.0800845883339,0.0799765848432,0.0800845883339,0.0799225830979,0.0798145796072,0.0796525743712,0.0791125569178,0.0795445708805,0.0794905691352,0.0794365673899,0.0801385900792,0.0805706040419,0.08105661975,0.0809486162593,0.081380630222,0.082514666874,0.0832706913087,0.0834866982901,0.082352661638,0.0824066633834,0.082352661638,0.08186664593,0.0818126441847,0.08267667211,0.0822446581474,0.0812726267313,0.0814346319673,0.0815966372033,0.082190656402,0.082028651166,0.082028651166,0.082352661638,0.082190656402,0.0815966372033,0.0810026180046,0.08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m <- 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ycorr <- 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altd  <- c(2, 151, 564, 582)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('01-FLM-GSE48082/DP103-3-iFLMbeta-GFP-GSM1167547/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 2,151,564,582',bty='n')
dev.off()