File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Platform Controlled by File Status Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF002ADK fastq reads ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 48 single-ended 1994901181 Ross Hardison, PennState 913ad45f406193014a6ce41fbf87c51f https://www.encodeproject.org/files/ENCFF002ADK/@@download/ENCFF002ADK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZYW/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADL bigWig signal ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 4516225950 Ross Hardison, PennState 9fe4624297cd9e8f2c7b4ba019026121 https://www.encodeproject.org/files/ENCFF002ADL/@@download/ENCFF002ADL.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADM fastq reads ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 48 single-ended 1982912528 Ross Hardison, PennState a67834f4970f6c561be75aa305c2c135 https://www.encodeproject.org/files/ENCFF002ADM/@@download/ENCFF002ADM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZYX/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADN bigWig signal ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 4652265522 Ross Hardison, PennState 695d247b28c6ac0ab2d2e5029233c69d https://www.encodeproject.org/files/ENCFF002ADN/@@download/ENCFF002ADN.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADO bigWig signal ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 4800422599 Ross Hardison, PennState 6f7ba022ac2c7658131608e64482eb07 https://www.encodeproject.org/files/ENCFF002ADO/@@download/ENCFF002ADO.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADP bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF002ADK 2243728860 Ross Hardison, PennState b8ff51239e79a47a91993c15b33e1c08 https://www.encodeproject.org/files/ENCFF002ADP/@@download/ENCFF002ADP.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADQ bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF002ADM 2248155130 Ross Hardison, PennState 14201d3c95cd78e5c85de401490fc1b9 https://www.encodeproject.org/files/ENCFF002ADQ/@@download/ENCFF002ADQ.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADR bigBed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 341945 Ross Hardison, PennState 18a549617f5a9339ac6f235e2b17d883 https://www.encodeproject.org/files/ENCFF002ADR/@@download/ENCFF002ADR.bigBed mm9 released low read length, mild to moderate bottlenecking missing derived_from, experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADS bigBed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 218368 Ross Hardison, PennState 56943eeda83fff5f84caef368f3dd5d3 https://www.encodeproject.org/files/ENCFF002ADS/@@download/ENCFF002ADS.bigBed mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADT bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 4475569314 Ross Hardison, PennState 1993e0c39414fc5888118772ccaaeab4 https://www.encodeproject.org/files/ENCFF002ADT/@@download/ENCFF002ADT.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF679LQY bed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE ENCFF002ADS 72075 ENCODE Consortium 6e0616d7ae014bb73d77737edd002f51 https://www.encodeproject.org/files/ENCFF679LQY/@@download/ENCFF679LQY.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF675MLK bed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE ENCFF002ADR 89346 ENCODE Consortium 887d20cec92d5327c3881356e1dc553a https://www.encodeproject.org/files/ENCFF675MLK/@@download/ENCFF675MLK.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF967JEP bam unfiltered alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 48 ENCFF002ADK, ENCFF018NEO 2419817528 ENCODE Processing Pipeline a92d7d8cec8e474f7ae1de1c8d41dd0b https://www.encodeproject.org/files/ENCFF967JEP/@@download/ENCFF967JEP.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF524MXM bam unfiltered alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 48 ENCFF002ADM, ENCFF018NEO 2412109522 ENCODE Processing Pipeline 9bab74594798502ae45f456949638240 https://www.encodeproject.org/files/ENCFF524MXM/@@download/ENCFF524MXM.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF499OEU bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 48 ENCFF002ADK, ENCFF018NEO 1361538084 ENCODE Processing Pipeline 8b81e8e11912bb703fbade9817beee30 https://www.encodeproject.org/files/ENCFF499OEU/@@download/ENCFF499OEU.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF464OJW bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 48 ENCFF002ADM, ENCFF018NEO 1485166553 ENCODE Processing Pipeline 610792b19b7adcda3a97a95da9dbc80b https://www.encodeproject.org/files/ENCFF464OJW/@@download/ENCFF464OJW.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF384CZR bigBed narrowPeak peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF436NIK 13524347 ENCODE Processing Pipeline 47077de0491c728619e2816a785954a1 https://www.encodeproject.org/files/ENCFF384CZR/@@download/ENCFF384CZR.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF458BGT bed narrowPeak optimal idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF034VDK, ENCFF436NIK, ENCFF547MET, ENCFF762AWW 414781 ENCODE Processing Pipeline 90b68db67e07d20a12671ce2763be882 https://www.encodeproject.org/files/ENCFF458BGT/@@download/ENCFF458BGT.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF303VMI bigWig signal p-value ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF464OJW, ENCFF499OEU, ENCFF549GXA, ENCFF717OFJ 1123336218 ENCODE Processing Pipeline ebd593d1ffd75760d854ebf272787a00 https://www.encodeproject.org/files/ENCFF303VMI/@@download/ENCFF303VMI.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF034VDK bed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF464OJW, ENCFF499OEU, ENCFF549GXA, ENCFF717OFJ 5157825 ENCODE Processing Pipeline 08e48234abf7659e9bf88d6bbe2b26ec https://www.encodeproject.org/files/ENCFF034VDK/@@download/ENCFF034VDK.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF649NXY bigBed narrowPeak conservative idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF152KNZ 360597 ENCODE Processing Pipeline 7db41e46be6d1df732e83435869fe8c2 https://www.encodeproject.org/files/ENCFF649NXY/@@download/ENCFF649NXY.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF206IDS bigWig fold change over control ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF464OJW, ENCFF549GXA 618820289 ENCODE Processing Pipeline e01221b679e7a28a038f6c9523e9369c https://www.encodeproject.org/files/ENCFF206IDS/@@download/ENCFF206IDS.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF175WAA bigBed narrowPeak peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF034VDK 8622559 ENCODE Processing Pipeline 67dbd3038518c1ddb74a64a2879110c3 https://www.encodeproject.org/files/ENCFF175WAA/@@download/ENCFF175WAA.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF762AWW bed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF499OEU, ENCFF717OFJ 5770162 ENCODE Processing Pipeline 51ac443f9fc37dd7e378f3c210839292 https://www.encodeproject.org/files/ENCFF762AWW/@@download/ENCFF762AWW.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF488HXY bigWig signal p-value ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF499OEU, ENCFF717OFJ 605729310 ENCODE Processing Pipeline 5307c8e6520785c2dbe8be05d282e6c3 https://www.encodeproject.org/files/ENCFF488HXY/@@download/ENCFF488HXY.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF325XMK bigWig signal p-value ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF464OJW, ENCFF549GXA 560018933 ENCODE Processing Pipeline 8c091b80291072aee5a985631be93862 https://www.encodeproject.org/files/ENCFF325XMK/@@download/ENCFF325XMK.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF086XQV bigWig fold change over control ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF499OEU, ENCFF717OFJ 625968857 ENCODE Processing Pipeline 8995fa841a6cad7c638b72d0d60fe5f8 https://www.encodeproject.org/files/ENCFF086XQV/@@download/ENCFF086XQV.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF436NIK bed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF464OJW, ENCFF549GXA 6026105 ENCODE Processing Pipeline 2e99a61c820b90d8b8f4c0b209cf120c https://www.encodeproject.org/files/ENCFF436NIK/@@download/ENCFF436NIK.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF341JZR bigBed narrowPeak peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF762AWW 11276960 ENCODE Processing Pipeline 2b162dc7ba4c4340be204f6f2487dc89 https://www.encodeproject.org/files/ENCFF341JZR/@@download/ENCFF341JZR.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF888LEV bigBed narrowPeak optimal idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF458BGT 874049 ENCODE Processing Pipeline f07095f7adc89d5a72ad309a4823d54f https://www.encodeproject.org/files/ENCFF888LEV/@@download/ENCFF888LEV.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF353ZBQ bigWig fold change over control ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF464OJW, ENCFF499OEU, ENCFF549GXA, ENCFF717OFJ 1244228287 ENCODE Processing Pipeline 36da6f6cfa239ddcc50ecbcf72d174c4 https://www.encodeproject.org/files/ENCFF353ZBQ/@@download/ENCFF353ZBQ.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF152KNZ bed narrowPeak conservative idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF034VDK, ENCFF436NIK, ENCFF547MET, ENCFF762AWW 158673 ENCODE Processing Pipeline 7973b8a29cd72f06cc8b8b83563ab057 https://www.encodeproject.org/files/ENCFF152KNZ/@@download/ENCFF152KNZ.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF001IGX bigBed narrowPeak peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVF 270001 Barbara Wold, Caltech bbcc80b199f0b27776f5ccf8a1024199 https://www.encodeproject.org/files/ENCFF001IGX/@@download/ENCFF001IGX.bigBed mm9 released low read depth ENCFF001IGY bigWig signal ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGZ 118685426 Barbara Wold, Caltech b22d5bde9d221214d1e6aa2b2b9b8804 https://www.encodeproject.org/files/ENCFF001IGY/@@download/ENCFF001IGY.bigWig mm9 released low read depth ENCFF001IGZ bam alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIF 1099433758 Barbara Wold, Caltech f4258162b9f9f1326d0d58b75a9abd82 https://www.encodeproject.org/files/ENCFF001IGZ/@@download/ENCFF001IGZ.bam mm9 released low read depth ENCFF001IIF fastq reads ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1062591253 Barbara Wold, Caltech 681bb4497c4540d61d1274829f3ace0a https://www.encodeproject.org/files/ENCFF001IIF/@@download/ENCFF001IIF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released low read depth ENCFF001XVF bed narrowPeak peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGZ 114418 Barbara Wold, Caltech 06e3426d102fa27a15fd30294f0ea4cf https://www.encodeproject.org/files/ENCFF001XVF/@@download/ENCFF001XVF.bed.gz mm9 released low read depth ENCFF690GJA bam unfiltered alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIF, ENCFF018NEO 1164084030 ENCODE Processing Pipeline 508878d37a40d46fc661ddd4c336cc89 https://www.encodeproject.org/files/ENCFF690GJA/@@download/ENCFF690GJA.bam mm10 released low read depth ENCFF259LKI bam alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIF, ENCFF018NEO 804177197 ENCODE Processing Pipeline 5907c8dd62c5756b524a1d29e072b453 https://www.encodeproject.org/files/ENCFF259LKI/@@download/ENCFF259LKI.bam mm10 released low read depth ENCFF140UCV bigWig fold change over control ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF259LKI, ENCFF993HAY 258781874 ENCODE Processing Pipeline a136e95d07525cfb0a5feb79e8adea55 https://www.encodeproject.org/files/ENCFF140UCV/@@download/ENCFF140UCV.bigWig mm10 released low read depth ENCFF427XVV bigWig signal p-value ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF259LKI, ENCFF993HAY 236287950 ENCODE Processing Pipeline 53501bdf3f4cd17eb4c6e3b00ee1d5dd https://www.encodeproject.org/files/ENCFF427XVV/@@download/ENCFF427XVV.bigWig mm10 released low read depth ENCFF208EDI bed narrowPeak peaks and background as input for IDR ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF259LKI, ENCFF993HAY 4070002 ENCODE Processing Pipeline e268fafab5800fa053aa2e3f41a7132d https://www.encodeproject.org/files/ENCFF208EDI/@@download/ENCFF208EDI.bed.gz mm10 released low read depth ENCFF441MFA bigBed narrowPeak peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF208EDI 10160259 ENCODE Processing Pipeline b135e9fb7c362b87e7cc3d0f5ebd726c https://www.encodeproject.org/files/ENCFF441MFA/@@download/ENCFF441MFA.bigBed mm10 released low read depth ENCFF520QOR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF208EDI, ENCFF547MET 235152 ENCODE Processing Pipeline bc1a0d716ba3a2a58c5658c38d23fd07 https://www.encodeproject.org/files/ENCFF520QOR/@@download/ENCFF520QOR.bed.gz mm10 released low read depth ENCFF485HOT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF520QOR 451130 ENCODE Processing Pipeline 82ef7c9bf10d37166f0e1a82c11e200b https://www.encodeproject.org/files/ENCFF485HOT/@@download/ENCFF485HOT.bigBed mm10 released low read depth ENCFF001IIL bigBed narrowPeak peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVN 220601 Barbara Wold, Caltech 8ec3c05ce3bafa87b4f129bb2f3da385 https://www.encodeproject.org/files/ENCFF001IIL/@@download/ENCFF001IIL.bigBed mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIM bigWig signal ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIN 120315318 Barbara Wold, Caltech 51ab5803b732f2bed3dfcc4f787ed5b2 https://www.encodeproject.org/files/ENCFF001IIM/@@download/ENCFF001IIM.bigWig mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIN bam alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIZ 1321418831 Barbara Wold, Caltech 9f12078f09b4f25d6349cff43f7aa62f https://www.encodeproject.org/files/ENCFF001IIN/@@download/ENCFF001IIN.bam mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIZ fastq reads ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1316268966 Barbara Wold, Caltech a70ed949cc8dacb54ebf6cf051a40d2f https://www.encodeproject.org/files/ENCFF001IIZ/@@download/ENCFF001IIZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XVN bed narrowPeak peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIN 112641 Barbara Wold, Caltech 2e53e72603c97d92a06e0a216e331952 https://www.encodeproject.org/files/ENCFF001XVN/@@download/ENCFF001XVN.bed.gz mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF580ZOK bam unfiltered alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIZ, ENCFF018NEO 1396389193 ENCODE Processing Pipeline 5bc4f812dce495ca1a6237a6be33488e https://www.encodeproject.org/files/ENCFF580ZOK/@@download/ENCFF580ZOK.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF094XRA bam alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIZ, ENCFF018NEO 836214587 ENCODE Processing Pipeline fd39221ac1f262382e40b2b1fcfb597a https://www.encodeproject.org/files/ENCFF094XRA/@@download/ENCFF094XRA.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF899ZDS bigWig signal p-value ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF094XRA, ENCFF993HAY 323001579 ENCODE Processing Pipeline c036f0dcfd1f8d23164992c696e63f47 https://www.encodeproject.org/files/ENCFF899ZDS/@@download/ENCFF899ZDS.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF170WKG bigWig fold change over control ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF094XRA, ENCFF993HAY 265227162 ENCODE Processing Pipeline 79836ec4169e701eb3de0122d2713d5a https://www.encodeproject.org/files/ENCFF170WKG/@@download/ENCFF170WKG.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF212ZQX bed narrowPeak peaks and background as input for IDR ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF094XRA, ENCFF993HAY 3956607 ENCODE Processing Pipeline d85e91b703fd70f67c4c976f8250c6b8 https://www.encodeproject.org/files/ENCFF212ZQX/@@download/ENCFF212ZQX.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF903SNT bigBed narrowPeak peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF212ZQX 10116712 ENCODE Processing Pipeline 20f18ef3575c6535d188e3f07404f646 https://www.encodeproject.org/files/ENCFF903SNT/@@download/ENCFF903SNT.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF828ODZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297QNM 335255 ENCODE Processing Pipeline bd6e972362613cb9b66cdad8f34fc231 https://www.encodeproject.org/files/ENCFF828ODZ/@@download/ENCFF828ODZ.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF297QNM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF212ZQX, ENCFF547MET 181696 ENCODE Processing Pipeline 3645230ec11c37e448bbedfbbf375bd9 https://www.encodeproject.org/files/ENCFF297QNM/@@download/ENCFF297QNM.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LIO bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIY 655886713 Bing Ren, UCSD ff91d21de7bd0410ebe7d488669b652a https://www.encodeproject.org/files/ENCFF001LIO/@@download/ENCFF001LIO.bam mm9 released low read length insufficient read depth ENCFF001LIP bigBed broadPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAC 772325 Bing Ren, UCSD cbaf068e4891980701433ac2e6908d65 https://www.encodeproject.org/files/ENCFF001LIP/@@download/ENCFF001LIP.bigBed mm9 released low read length insufficient read depth ENCFF001LIQ fasta reads ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 272571716 Bing Ren, UCSD 1ce4c2749fd009cc210f576c0445b329 https://www.encodeproject.org/files/ENCFF001LIQ/@@download/ENCFF001LIQ.fasta.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length insufficient read depth ENCFF001LIR bigWig signal ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIO, ENCFF001LIS 74672152 Bing Ren, UCSD cd5bb360fd3b7f6ba363298d9725db24 https://www.encodeproject.org/files/ENCFF001LIR/@@download/ENCFF001LIR.bigWig mm9 released low read length insufficient read depth ENCFF001LIS bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIQ 376062057 Bing Ren, UCSD a8da9a71ed2a19b289a21e67659793a7 https://www.encodeproject.org/files/ENCFF001LIS/@@download/ENCFF001LIS.bam mm9 released low read length insufficient read depth ENCFF001LIY fastq reads ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 748161937 Bing Ren, UCSD 395a8989661e9371c76790b9df3fede5 https://www.encodeproject.org/files/ENCFF001LIY/@@download/ENCFF001LIY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length insufficient read depth ENCFF001YAC bed broadPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIO, ENCFF001LIS 468131 Bing Ren, UCSD 6254f6bd93a625cd811483e4e4e8a969 https://www.encodeproject.org/files/ENCFF001YAC/@@download/ENCFF001YAC.bed.gz mm9 released low read length insufficient read depth ENCFF377NUX bam unfiltered alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 812994048 ENCODE Processing Pipeline 6dca092053ea624ee2f4ea89baff96f2 https://www.encodeproject.org/files/ENCFF377NUX/@@download/ENCFF377NUX.bam mm10 released low read length insufficient read depth ENCFF269TJX bam unfiltered alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 432703351 ENCODE Processing Pipeline 220daf1a5bb5770036bf7001377baa08 https://www.encodeproject.org/files/ENCFF269TJX/@@download/ENCFF269TJX.bam mm10 released low read length insufficient read depth ENCFF061WVR bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 449095333 ENCODE Processing Pipeline 86018524d1abbaffcf30826a612cdcea https://www.encodeproject.org/files/ENCFF061WVR/@@download/ENCFF061WVR.bam mm10 released low read length insufficient read depth ENCFF285RBT bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 208725304 ENCODE Processing Pipeline 4576fb73270b4e92a1eb9d262944317a https://www.encodeproject.org/files/ENCFF285RBT/@@download/ENCFF285RBT.bam mm10 released low read length insufficient read depth ENCFF360ITA bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 393427388 ENCODE Processing Pipeline 8791db6b2b274da2916e1bd969c5b910 https://www.encodeproject.org/files/ENCFF360ITA/@@download/ENCFF360ITA.bigWig mm10 released low read length insufficient read depth ENCFF069PTO bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 474113855 ENCODE Processing Pipeline 836969e0051aaccadf0621ee009aa193 https://www.encodeproject.org/files/ENCFF069PTO/@@download/ENCFF069PTO.bigWig mm10 released low read length insufficient read depth ENCFF846EML bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF926DQD 1109781 ENCODE Processing Pipeline 48f7c05620658a4e4b8f66114f10334f https://www.encodeproject.org/files/ENCFF846EML/@@download/ENCFF846EML.bigBed mm10 released low read length insufficient read depth ENCFF339GSH bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 355896775 ENCODE Processing Pipeline d583f92cbc3b4aeb038c8e9f7425f1bc https://www.encodeproject.org/files/ENCFF339GSH/@@download/ENCFF339GSH.bigWig mm10 released low read length insufficient read depth ENCFF520LES bed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 2682856 ENCODE Processing Pipeline 4bdadefd44917178aae088c233af797b https://www.encodeproject.org/files/ENCFF520LES/@@download/ENCFF520LES.bed.gz mm10 released low read length insufficient read depth ENCFF844FJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF508CKL 1199405 ENCODE Processing Pipeline ac351b3a87798d7bf6a559f6c041411e https://www.encodeproject.org/files/ENCFF844FJE/@@download/ENCFF844FJE.bigBed mm10 released low read length insufficient read depth ENCFF634ZNO bed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 2523345 ENCODE Processing Pipeline d593f3eb14e13163ba33525cb7dd9481 https://www.encodeproject.org/files/ENCFF634ZNO/@@download/ENCFF634ZNO.bed.gz mm10 released low read length insufficient read depth ENCFF929SPK bigBed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF229BOI 7315533 ENCODE Processing Pipeline 562a2b3b2df3aae973fb21f5601b6fcf https://www.encodeproject.org/files/ENCFF929SPK/@@download/ENCFF929SPK.bigBed mm10 released low read length insufficient read depth ENCFF709CZX bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 348457432 ENCODE Processing Pipeline d974e90cac91682673f7b5020a968125 https://www.encodeproject.org/files/ENCFF709CZX/@@download/ENCFF709CZX.bigWig mm10 released low read length insufficient read depth ENCFF818DTC bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 231114445 ENCODE Processing Pipeline 6fac73ecffe2943243abdada47587b7c https://www.encodeproject.org/files/ENCFF818DTC/@@download/ENCFF818DTC.bigWig mm10 released low read length insufficient read depth ENCFF409PBR bigBed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF520LES 6122436 ENCODE Processing Pipeline 0e81933448e5998c461ae9684995cd0e https://www.encodeproject.org/files/ENCFF409PBR/@@download/ENCFF409PBR.bigBed mm10 released low read length insufficient read depth ENCFF867SYU bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 194264263 ENCODE Processing Pipeline 90da356462ad315ef28e34c563e1571a https://www.encodeproject.org/files/ENCFF867SYU/@@download/ENCFF867SYU.bigWig mm10 released low read length insufficient read depth ENCFF229BOI bed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 3076662 ENCODE Processing Pipeline 6ef32fe6c60b463dc651d178c1c7a482 https://www.encodeproject.org/files/ENCFF229BOI/@@download/ENCFF229BOI.bed.gz mm10 released low read length insufficient read depth ENCFF904JMP bigBed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF634ZNO 5130597 ENCODE Processing Pipeline 6d410e469dc5c032f5b2d18644d8784f https://www.encodeproject.org/files/ENCFF904JMP/@@download/ENCFF904JMP.bigBed mm10 released low read length insufficient read depth ENCFF926DQD bed narrowPeak conservative idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF229BOI, ENCFF520LES, ENCFF547MET, ENCFF634ZNO 597955 ENCODE Processing Pipeline e583e34b868090b7ab0cbcd43ab5c24a https://www.encodeproject.org/files/ENCFF926DQD/@@download/ENCFF926DQD.bed.gz mm10 released low read length insufficient read depth ENCFF508CKL bed narrowPeak optimal idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF229BOI, ENCFF520LES, ENCFF547MET, ENCFF634ZNO 662595 ENCODE Processing Pipeline 47204ccf6b524aae64a0e776b25956aa https://www.encodeproject.org/files/ENCFF508CKL/@@download/ENCFF508CKL.bed.gz mm10 released low read length insufficient read depth ENCFF001MTQ bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MTY 4916346384 Ross Hardison, PennState f343533d2cdc6b64d81d86f8c3acf431 https://www.encodeproject.org/files/ENCFF001MTQ/@@download/ENCFF001MTQ.bam mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MTR bigBed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE ENCFF001YGF 154698 Ross Hardison, PennState e9d5ce5cce788b2eaa847df72ce6e56f https://www.encodeproject.org/files/ENCFF001MTR/@@download/ENCFF001MTR.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MTS bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF001MTZ 5965247696 Ross Hardison, PennState 2f4e54269db0fc9072301f1a60d9d97c https://www.encodeproject.org/files/ENCFF001MTS/@@download/ENCFF001MTS.bam mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MTT bigBed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YGG 161895 Ross Hardison, PennState 776af5171aac77a3370ad48a986ac344 https://www.encodeproject.org/files/ENCFF001MTT/@@download/ENCFF001MTT.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MTU bigBed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 ENCFF001YGH 106768 Ross Hardison, PennState 5718e2c9cd3b8505032376e6b6d6d9c7 https://www.encodeproject.org/files/ENCFF001MTU/@@download/ENCFF001MTU.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MTV bigWig signal ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 5010294007 Ross Hardison, PennState 43fb04bf2202b5535b86ac04b79cff87 https://www.encodeproject.org/files/ENCFF001MTV/@@download/ENCFF001MTV.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, missing derived_from, biological replicates with identical biosample ENCFF001MTW bigWig signal ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 5169906511 Ross Hardison, PennState ceb5678102a899710c25628b09c95be0 https://www.encodeproject.org/files/ENCFF001MTW/@@download/ENCFF001MTW.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, missing derived_from, biological replicates with identical biosample ENCFF001MTX bigWig signal ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 6154100954 Ross Hardison, PennState e87dd4c4a19c1d83566d101b924f7561 https://www.encodeproject.org/files/ENCFF001MTX/@@download/ENCFF001MTX.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, missing derived_from, biological replicates with identical biosample ENCFF001MTY fastq reads ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 55 single-ended 4215419263 Ross Hardison, PennState b5dee4a8a9ab7d8f26c8239cf03658c9 https://www.encodeproject.org/files/ENCFF001MTY/@@download/ENCFF001MTY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MTZ fastq reads ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 48 single-ended 5159708324 Ross Hardison, PennState be60f748feb5eb302a40c7d9df58e816 https://www.encodeproject.org/files/ENCFF001MTZ/@@download/ENCFF001MTZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001YGF bed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 58317 Ross Hardison, PennState 135ec190933fa12645d2b60c0804ca56 https://www.encodeproject.org/files/ENCFF001YGF/@@download/ENCFF001YGF.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, missing derived_from, biological replicates with identical biosample ENCFF001YGG bed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 66331 Ross Hardison, PennState acf06d26611ec4dcc9fd67452f85e68e https://www.encodeproject.org/files/ENCFF001YGG/@@download/ENCFF001YGG.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, missing derived_from, biological replicates with identical biosample ENCFF001YGH bed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 38081 Ross Hardison, PennState 1f73be1c0fd3c4b597d195e1dadee6a2 https://www.encodeproject.org/files/ENCFF001YGH/@@download/ENCFF001YGH.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms NTR biosample, missing derived_from, biological replicates with identical biosample ENCFF807GJJ bam unfiltered alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MTY, ENCFF018NEO 4310799638 ENCODE Processing Pipeline 2f6d11d854966540d7618484b0107cd2 https://www.encodeproject.org/files/ENCFF807GJJ/@@download/ENCFF807GJJ.bam mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF879WSC bam unfiltered alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MTZ, ENCFF018NEO 5764585844 ENCODE Processing Pipeline de921ff1dc8cd8df2b3631a0d26c5d1c https://www.encodeproject.org/files/ENCFF879WSC/@@download/ENCFF879WSC.bam mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF816XGO bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MTY, ENCFF018NEO 3165515136 ENCODE Processing Pipeline 2911085887f82d6721cb2243a0671d3d https://www.encodeproject.org/files/ENCFF816XGO/@@download/ENCFF816XGO.bam mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF556CHE bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MTZ, ENCFF018NEO 3894800981 ENCODE Processing Pipeline d6258b64429604f68da5d757bebebee2 https://www.encodeproject.org/files/ENCFF556CHE/@@download/ENCFF556CHE.bam mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF992TGS bigWig signal p-value ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 1124965364 ENCODE Processing Pipeline f6f21b700f2673632d5a3d97d34ef8fb https://www.encodeproject.org/files/ENCFF992TGS/@@download/ENCFF992TGS.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF842OQE bigWig signal p-value ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF556CHE, ENCFF769SND, ENCFF887RWQ 1219679203 ENCODE Processing Pipeline fd7f1f35cca41bbf6381507666d6987e https://www.encodeproject.org/files/ENCFF842OQE/@@download/ENCFF842OQE.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF413LJT bigWig signal p-value ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF556CHE, ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 1799088882 ENCODE Processing Pipeline 356f6fec0b325c5540edbdfa039e9693 https://www.encodeproject.org/files/ENCFF413LJT/@@download/ENCFF413LJT.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF733OIM bigWig fold change over control ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 1382248039 ENCODE Processing Pipeline c0a2c3bb98f8ce14f2bd02927e94d146 https://www.encodeproject.org/files/ENCFF733OIM/@@download/ENCFF733OIM.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF149GEQ bigWig fold change over control ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF556CHE, ENCFF769SND, ENCFF887RWQ 1537556541 ENCODE Processing Pipeline e33f99273f55c436b2d446fc9dac3e5c https://www.encodeproject.org/files/ENCFF149GEQ/@@download/ENCFF149GEQ.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF460EAQ bigWig fold change over control ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF556CHE, ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 2012668752 ENCODE Processing Pipeline 544bbe6066fe31252681c2acc4ead33a https://www.encodeproject.org/files/ENCFF460EAQ/@@download/ENCFF460EAQ.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF790TJE bed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF556CHE, ENCFF769SND, ENCFF887RWQ 6996425 ENCODE Processing Pipeline c0d6eb177d87b698e4add051d0bf646c https://www.encodeproject.org/files/ENCFF790TJE/@@download/ENCFF790TJE.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF082ZXF bed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 7119310 ENCODE Processing Pipeline 7116b3e11b3fc4fe2941bc6116412903 https://www.encodeproject.org/files/ENCFF082ZXF/@@download/ENCFF082ZXF.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF630ESV bed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF556CHE, ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 7270758 ENCODE Processing Pipeline a2105fb2bf0deb865e341cdb14dcf405 https://www.encodeproject.org/files/ENCFF630ESV/@@download/ENCFF630ESV.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF565RAC bigBed narrowPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF790TJE 11341298 ENCODE Processing Pipeline 87ada54f418940f80d3faa265022e7af https://www.encodeproject.org/files/ENCFF565RAC/@@download/ENCFF565RAC.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF123JSF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF890NMH 127565 ENCODE Processing Pipeline 757df5644a764b09a952f51a029d5aa6 https://www.encodeproject.org/files/ENCFF123JSF/@@download/ENCFF123JSF.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF111EJN bigBed narrowPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF082ZXF 13240177 ENCODE Processing Pipeline 366c4bad13148f20e37ddb4da92ede75 https://www.encodeproject.org/files/ENCFF111EJN/@@download/ENCFF111EJN.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF021FKC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF151IMU 151082 ENCODE Processing Pipeline e33477f1974c711b6356670f44d99bc7 https://www.encodeproject.org/files/ENCFF021FKC/@@download/ENCFF021FKC.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF151IMU bed narrowPeak optimal idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF082ZXF, ENCFF547MET, ENCFF630ESV, ENCFF790TJE 62273 ENCODE Processing Pipeline 8378edf484528fc351de285d63306e8e https://www.encodeproject.org/files/ENCFF151IMU/@@download/ENCFF151IMU.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF883DBM bigBed narrowPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF630ESV 13346291 ENCODE Processing Pipeline 0c6e241e005b109bd137c6b3a38997f6 https://www.encodeproject.org/files/ENCFF883DBM/@@download/ENCFF883DBM.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF890NMH bed narrowPeak conservative idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF082ZXF, ENCFF547MET, ENCFF630ESV, ENCFF790TJE 45734 ENCODE Processing Pipeline eb9fa2cfbafcc20cb80a684352e5694d https://www.encodeproject.org/files/ENCFF890NMH/@@download/ENCFF890NMH.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms NTR biosample, biological replicates with identical biosample ENCFF001MPH bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MPN 726490167 Ross Hardison, PennState b508ec2542bce708b5c853c316bb463f https://www.encodeproject.org/files/ENCFF001MPH/@@download/ENCFF001MPH.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPI bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MPP 1098652475 Ross Hardison, PennState cf78ef6afb127a363aa393a74f26fe12 https://www.encodeproject.org/files/ENCFF001MPI/@@download/ENCFF001MPI.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPJ bigBed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFG 335787 Ross Hardison, PennState f6195224bbfc19b4dce8cf27e05283da https://www.encodeproject.org/files/ENCFF001MPJ/@@download/ENCFF001MPJ.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPK bigBed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFH 231474 Ross Hardison, PennState 2da0ef1a23d9cc9d326724ebd9d2e12d https://www.encodeproject.org/files/ENCFF001MPK/@@download/ENCFF001MPK.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPL bigBed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFI 257215 Ross Hardison, PennState 1b1490bef05ca1cb490c59c12ec3298d https://www.encodeproject.org/files/ENCFF001MPL/@@download/ENCFF001MPL.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPM bigWig signal ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2942733014 Ross Hardison, PennState 0bf363e406767f8fcd427598ef23781c https://www.encodeproject.org/files/ENCFF001MPM/@@download/ENCFF001MPM.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MPN fastq reads ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 569247428 Ross Hardison, PennState ae7b53f47a2b2820ef60d3f3bd861f13 https://www.encodeproject.org/files/ENCFF001MPN/@@download/ENCFF001MPN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPO bigWig signal ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3679495816 Ross Hardison, PennState fc9ff8bd708564b1f4c3d45f1204df5f https://www.encodeproject.org/files/ENCFF001MPO/@@download/ENCFF001MPO.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MPP fastq reads ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 854143018 Ross Hardison, PennState c0812f961ec1c6fcc58818a990421be3 https://www.encodeproject.org/files/ENCFF001MPP/@@download/ENCFF001MPP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released low read length, low read depth, mixed read lengths, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MPQ bigWig signal ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 4617193394 Ross Hardison, PennState 3c0425e1f1805645b26a7a373e816d99 https://www.encodeproject.org/files/ENCFF001MPQ/@@download/ENCFF001MPQ.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFG bed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 134555 Ross Hardison, PennState de42d1b1b655238552344d86bc62d72f https://www.encodeproject.org/files/ENCFF001YFG/@@download/ENCFF001YFG.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFH bed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 105689 Ross Hardison, PennState c4d55b0a83ce5fdacc2a452f3ec386aa https://www.encodeproject.org/files/ENCFF001YFH/@@download/ENCFF001YFH.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFI bed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 127342 Ross Hardison, PennState 43b6f99f90ddee89c039b95d7e5c2b8c https://www.encodeproject.org/files/ENCFF001YFI/@@download/ENCFF001YFI.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF668VVF bam unfiltered alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPP, ENCFF018NEO 1058821924 ENCODE Processing Pipeline f7d63655e4a4b52dd0059f6af3c85eab https://www.encodeproject.org/files/ENCFF668VVF/@@download/ENCFF668VVF.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF209XZQ bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPP, ENCFF018NEO 733770678 ENCODE Processing Pipeline 4fc9f869082dd3a8580586f666a88217 https://www.encodeproject.org/files/ENCFF209XZQ/@@download/ENCFF209XZQ.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF736VQJ bam unfiltered alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MPN, ENCFF018NEO 761336385 ENCODE Processing Pipeline a041486f7666ed07b21e87be484ee70c https://www.encodeproject.org/files/ENCFF736VQJ/@@download/ENCFF736VQJ.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF178CJO bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MPN, ENCFF018NEO 506585997 ENCODE Processing Pipeline 2ea2fda4b76b94993b4e9ec0232bf10d https://www.encodeproject.org/files/ENCFF178CJO/@@download/ENCFF178CJO.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF005KHO bigWig signal p-value ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF178CJO, ENCFF984QUA 728961411 ENCODE Processing Pipeline c2a259f2db106b10003f48f5713fdb5e https://www.encodeproject.org/files/ENCFF005KHO/@@download/ENCFF005KHO.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF615KKN bigWig signal p-value ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF209XZQ, ENCFF984QUA 926642119 ENCODE Processing Pipeline 3dde2335fbdfedae942700cf4bf81dee https://www.encodeproject.org/files/ENCFF615KKN/@@download/ENCFF615KKN.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF108CIB bigWig signal p-value ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF178CJO, ENCFF209XZQ, ENCFF984QUA 995229299 ENCODE Processing Pipeline 2ebf13e1ffe7ca1e30683b1fc8d6c854 https://www.encodeproject.org/files/ENCFF108CIB/@@download/ENCFF108CIB.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF177RDY bigWig fold change over control ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF178CJO, ENCFF984QUA 555237555 ENCODE Processing Pipeline b6e4dfcd8c315fbdaae247e10bc0de8f https://www.encodeproject.org/files/ENCFF177RDY/@@download/ENCFF177RDY.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF812BEF bigWig fold change over control ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF209XZQ, ENCFF984QUA 762987935 ENCODE Processing Pipeline d2835ab7a27b1029139a9504b8498181 https://www.encodeproject.org/files/ENCFF812BEF/@@download/ENCFF812BEF.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF263FFV bigWig fold change over control ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF178CJO, ENCFF209XZQ, ENCFF984QUA 993931647 ENCODE Processing Pipeline 6dce1cb9ef5f0c203ee80102a0b4e882 https://www.encodeproject.org/files/ENCFF263FFV/@@download/ENCFF263FFV.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF037UNY bed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF178CJO, ENCFF984QUA 5610054 ENCODE Processing Pipeline 8a8b2fbb3d5cedd8727980cc79c8f896 https://www.encodeproject.org/files/ENCFF037UNY/@@download/ENCFF037UNY.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF035IKI bigBed narrowPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF578SUN 13418123 ENCODE Processing Pipeline 6cd22bd6923ba0af2aeedda3e83dff16 https://www.encodeproject.org/files/ENCFF035IKI/@@download/ENCFF035IKI.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF578SUN bed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF209XZQ, ENCFF984QUA 6116831 ENCODE Processing Pipeline c7401392b52dce64e930ada6d240ce05 https://www.encodeproject.org/files/ENCFF578SUN/@@download/ENCFF578SUN.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF461KXI bed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF178CJO, ENCFF209XZQ, ENCFF984QUA 6569225 ENCODE Processing Pipeline f6b570d218c904382f84389e0e33f028 https://www.encodeproject.org/files/ENCFF461KXI/@@download/ENCFF461KXI.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF226JNV bigBed narrowPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF037UNY 13343653 ENCODE Processing Pipeline e100f9de0bc585e8b18fcfb5bf377cd5 https://www.encodeproject.org/files/ENCFF226JNV/@@download/ENCFF226JNV.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF691HWC bed narrowPeak optimal idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF037UNY, ENCFF461KXI, ENCFF547MET, ENCFF578SUN 132433 ENCODE Processing Pipeline b0217e14217025e90d9f7a5e014f0a30 https://www.encodeproject.org/files/ENCFF691HWC/@@download/ENCFF691HWC.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF801VSG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF439DUG 303048 ENCODE Processing Pipeline 54e924f60eea2fbb1e03f9db66fbc504 https://www.encodeproject.org/files/ENCFF801VSG/@@download/ENCFF801VSG.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF090CXQ bigBed narrowPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF461KXI 13494840 ENCODE Processing Pipeline 073b842b4d938064115f6d9127b23221 https://www.encodeproject.org/files/ENCFF090CXQ/@@download/ENCFF090CXQ.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF093SSV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF691HWC 301869 ENCODE Processing Pipeline a6af75fa068bfc1f7169503a4ee9661a https://www.encodeproject.org/files/ENCFF093SSV/@@download/ENCFF093SSV.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF439DUG bed narrowPeak conservative idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF037UNY, ENCFF461KXI, ENCFF547MET, ENCFF578SUN 133396 ENCODE Processing Pipeline 7b550392e522d44dfc19a4f4f2cd3b34 https://www.encodeproject.org/files/ENCFF439DUG/@@download/ENCFF439DUG.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001IHM bigBed narrowPeak peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVI 408779 Barbara Wold, Caltech 8dc3fb8d63960750e1e9e9a313ad2248 https://www.encodeproject.org/files/ENCFF001IHM/@@download/ENCFF001IHM.bigBed mm9 released low read depth insufficient read length ENCFF001IHN fastq reads ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 362051903 Barbara Wold, Caltech 4ec82286ec83cb00d075233992da259c https://www.encodeproject.org/files/ENCFF001IHN/@@download/ENCFF001IHN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length ENCFF001IHO fastq reads ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 546755018 Barbara Wold, Caltech 6e545329c27a063f054f5fafa23ddc4b https://www.encodeproject.org/files/ENCFF001IHO/@@download/ENCFF001IHO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length ENCFF001IHP fastq reads ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 559717731 Barbara Wold, Caltech 9da3908e4581c67589e4bf04312482ef https://www.encodeproject.org/files/ENCFF001IHP/@@download/ENCFF001IHP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length ENCFF001IHQ bigWig signal ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHR 133175084 Barbara Wold, Caltech 0355ab38a4c98284c7a93b83347543d6 https://www.encodeproject.org/files/ENCFF001IHQ/@@download/ENCFF001IHQ.bigWig mm9 released low read depth insufficient read length ENCFF001IHR bam alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP 1598424109 Barbara Wold, Caltech 37811e0265dc66a8782c0692a533c72d https://www.encodeproject.org/files/ENCFF001IHR/@@download/ENCFF001IHR.bam mm9 released low read depth insufficient read length ENCFF001XVI bed narrowPeak peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHR 217819 Barbara Wold, Caltech 97c13b2164295656f8d5b613b1adc748 https://www.encodeproject.org/files/ENCFF001XVI/@@download/ENCFF001XVI.bed.gz mm9 released low read depth insufficient read length ENCFF415FYP bam unfiltered alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP, ENCFF018NEO 1681319964 ENCODE Processing Pipeline ac2e33310b3ba3b0d5d71ee1f01d6536 https://www.encodeproject.org/files/ENCFF415FYP/@@download/ENCFF415FYP.bam mm10 released low read depth insufficient read length ENCFF887LKL bam alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP, ENCFF018NEO 737329112 ENCODE Processing Pipeline cd0655c39dfe2af36a254dee4c723ddb https://www.encodeproject.org/files/ENCFF887LKL/@@download/ENCFF887LKL.bam mm10 released low read depth insufficient read length ENCFF925GDS bigWig signal p-value ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF887LKL 220829899 ENCODE Processing Pipeline 88199074b0acfe6a3e70f5100a5c8438 https://www.encodeproject.org/files/ENCFF925GDS/@@download/ENCFF925GDS.bigWig mm10 released low read depth insufficient read length ENCFF287INI bed narrowPeak peaks and background as input for IDR ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF887LKL 4400187 ENCODE Processing Pipeline 6430fed4a18fc1ba3c111194ec7bef27 https://www.encodeproject.org/files/ENCFF287INI/@@download/ENCFF287INI.bed.gz mm10 released low read depth insufficient read length ENCFF774MAL bigBed narrowPeak peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF287INI 10243832 ENCODE Processing Pipeline 6ea3688a4bac39bf201f3ad505242071 https://www.encodeproject.org/files/ENCFF774MAL/@@download/ENCFF774MAL.bigBed mm10 released low read depth insufficient read length ENCFF462ONT bigWig fold change over control ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF887LKL 245513037 ENCODE Processing Pipeline fabe20c48126ca23d6e3bfd60398b51c https://www.encodeproject.org/files/ENCFF462ONT/@@download/ENCFF462ONT.bigWig mm10 released low read depth insufficient read length ENCFF423NWT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF287INI, ENCFF547MET 308533 ENCODE Processing Pipeline aa12d43fe9c3c0eaba9c9cd4e76f0a34 https://www.encodeproject.org/files/ENCFF423NWT/@@download/ENCFF423NWT.bed.gz mm10 released low read depth insufficient read length ENCFF570PGV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF423NWT 578697 ENCODE Processing Pipeline 6dcdd1754bbe67624cbd26099cb4c199 https://www.encodeproject.org/files/ENCFF570PGV/@@download/ENCFF570PGV.bigBed mm10 released low read depth insufficient read length ENCFF001IFJ bigBed narrowPeak peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUY 295473 Barbara Wold, Caltech 63780796b2388541f4a00426ad21c0a4 https://www.encodeproject.org/files/ENCFF001IFJ/@@download/ENCFF001IFJ.bigBed mm9 released mild to moderate bottlenecking ENCFF001IFK bam alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHT 1605627491 Barbara Wold, Caltech 4e5aae20e38b48349f6530e6a264289b https://www.encodeproject.org/files/ENCFF001IFK/@@download/ENCFF001IFK.bam mm9 released mild to moderate bottlenecking ENCFF001IFL bigWig signal ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFK 166393332 Barbara Wold, Caltech f6ce7345e375d480a713ed96c76a3e07 https://www.encodeproject.org/files/ENCFF001IFL/@@download/ENCFF001IFL.bigWig mm9 released mild to moderate bottlenecking ENCFF001IHT fastq reads ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1584941463 Barbara Wold, Caltech 27e0edbf2b3e1b202e43cf5d2705a053 https://www.encodeproject.org/files/ENCFF001IHT/@@download/ENCFF001IHT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released mild to moderate bottlenecking ENCFF001XUY bed narrowPeak peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFK 149725 Barbara Wold, Caltech db99dba2b994c2d164bc6605a1ec4c3c https://www.encodeproject.org/files/ENCFF001XUY/@@download/ENCFF001XUY.bed.gz mm9 released mild to moderate bottlenecking ENCFF083XFF bam unfiltered alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IHT, ENCFF018NEO 1691405126 ENCODE Processing Pipeline 628ddfb306f392b6dfe07329dfddc65b https://www.encodeproject.org/files/ENCFF083XFF/@@download/ENCFF083XFF.bam mm10 released mild to moderate bottlenecking ENCFF297STQ bam alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IHT, ENCFF018NEO 1112541493 ENCODE Processing Pipeline 4fa4b3d54b1d9f841b068eaf6d37654e https://www.encodeproject.org/files/ENCFF297STQ/@@download/ENCFF297STQ.bam mm10 released mild to moderate bottlenecking ENCFF562MCA bigWig signal p-value ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297STQ, ENCFF875IDP 245998788 ENCODE Processing Pipeline c301bcb02a714e89457f2c97678317b6 https://www.encodeproject.org/files/ENCFF562MCA/@@download/ENCFF562MCA.bigWig mm10 released mild to moderate bottlenecking ENCFF862HLX bigWig fold change over control ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297STQ, ENCFF875IDP 306469003 ENCODE Processing Pipeline 7ce4a1d13b489e81c06b5614daf7efc3 https://www.encodeproject.org/files/ENCFF862HLX/@@download/ENCFF862HLX.bigWig mm10 released mild to moderate bottlenecking ENCFF258ZCJ bed narrowPeak peaks and background as input for IDR ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297STQ, ENCFF875IDP 4731402 ENCODE Processing Pipeline 502b039b2ace55c11395a41f86d4a160 https://www.encodeproject.org/files/ENCFF258ZCJ/@@download/ENCFF258ZCJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF981SVD bigBed narrowPeak peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258ZCJ 10538891 ENCODE Processing Pipeline 8a31d5dfd0922eab4293c0438590fcb0 https://www.encodeproject.org/files/ENCFF981SVD/@@download/ENCFF981SVD.bigBed mm10 released mild to moderate bottlenecking ENCFF144MZR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258ZCJ, ENCFF547MET 349559 ENCODE Processing Pipeline daa82118501c515dc2224ea26b7a75c1 https://www.encodeproject.org/files/ENCFF144MZR/@@download/ENCFF144MZR.bed.gz mm10 released mild to moderate bottlenecking ENCFF991LVG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF144MZR 710487 ENCODE Processing Pipeline 39fecd04a0c7f2a18fef415fd913dc4c https://www.encodeproject.org/files/ENCFF991LVG/@@download/ENCFF991LVG.bigBed mm10 released mild to moderate bottlenecking ENCFF001IDA bam alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IDP 1518845615 Barbara Wold, Caltech d9537459e61047eac9043479fa2b16ed https://www.encodeproject.org/files/ENCFF001IDA/@@download/ENCFF001IDA.bam mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IDB bigBed narrowPeak peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUT 308007 Barbara Wold, Caltech 52285bf13a7471d36ee34faf34a4a69f https://www.encodeproject.org/files/ENCFF001IDB/@@download/ENCFF001IDB.bigBed mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IDE bigWig signal ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDA 105717961 Barbara Wold, Caltech 88b560e62ea8a88dc81b5886f5b948de https://www.encodeproject.org/files/ENCFF001IDE/@@download/ENCFF001IDE.bigWig mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IDP fastq reads ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1583392127 Barbara Wold, Caltech 3829991ad29d3f3696d3407fdf9c8833 https://www.encodeproject.org/files/ENCFF001IDP/@@download/ENCFF001IDP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XUT bed narrowPeak peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDA 187553 Barbara Wold, Caltech bf4f6508029936584d5c68c1547fcf87 https://www.encodeproject.org/files/ENCFF001XUT/@@download/ENCFF001XUT.bed.gz mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF141BNG bam unfiltered alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDP, ENCFF018NEO 1580188743 ENCODE Processing Pipeline 5fa508045d5058f5138da1a6cd1929a5 https://www.encodeproject.org/files/ENCFF141BNG/@@download/ENCFF141BNG.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF361FQN bam alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDP, ENCFF018NEO 659226877 ENCODE Processing Pipeline 580ba19fb60abd1e7e616066828848b8 https://www.encodeproject.org/files/ENCFF361FQN/@@download/ENCFF361FQN.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF031NXN bigWig signal p-value ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF361FQN, ENCFF875IDP 228550460 ENCODE Processing Pipeline 77d3bc5d3b5a869e3dc2f739ebfed53d https://www.encodeproject.org/files/ENCFF031NXN/@@download/ENCFF031NXN.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF674URL bigWig fold change over control ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF361FQN, ENCFF875IDP 195520517 ENCODE Processing Pipeline 1844b2f172661d3d781c05d9e76b15ba https://www.encodeproject.org/files/ENCFF674URL/@@download/ENCFF674URL.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF706ZYA bed narrowPeak peaks and background as input for IDR ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF361FQN, ENCFF875IDP 3838234 ENCODE Processing Pipeline 7a4b95a30679586276ecf63c9d78449c https://www.encodeproject.org/files/ENCFF706ZYA/@@download/ENCFF706ZYA.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF867PBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF706ZYA 223243 ENCODE Processing Pipeline ea4f8b267e0baeb43b6271365c442b8c https://www.encodeproject.org/files/ENCFF867PBE/@@download/ENCFF867PBE.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF537SND bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF867PBE 390950 ENCODE Processing Pipeline 03d0387e9135e443d0208affa6c4dbd3 https://www.encodeproject.org/files/ENCFF537SND/@@download/ENCFF537SND.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF191DOH bigBed narrowPeak peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF706ZYA 7770744 ENCODE Processing Pipeline 6137d7ff75a5b35a31a6764a28f0ceed https://www.encodeproject.org/files/ENCFF191DOH/@@download/ENCFF191DOH.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IFM bigBed narrowPeak peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUZ 393835 Barbara Wold, Caltech 5ded330e25d5307ac2f42c16361885d1 https://www.encodeproject.org/files/ENCFF001IFM/@@download/ENCFF001IFM.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF001IFN fastq reads ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 1088968509 Barbara Wold, Caltech e7b97cb8edca3e8f4d9ee5d5205f6ca7 https://www.encodeproject.org/files/ENCFF001IFN/@@download/ENCFF001IFN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF001IFO fastq reads ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 331435284 Barbara Wold, Caltech 0f9a9c343aed123dd0108f919859cf48 https://www.encodeproject.org/files/ENCFF001IFO/@@download/ENCFF001IFO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF001IFP bigWig signal ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFQ 57347869 Barbara Wold, Caltech 8dbe7ff0ecac51e8fbc12a6fc19eb5b7 https://www.encodeproject.org/files/ENCFF001IFP/@@download/ENCFF001IFP.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF001IFQ bam alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IFN, ENCFF001IFO 1419850253 Barbara Wold, Caltech fd775fc897f2321ac6715fa0196649a6 https://www.encodeproject.org/files/ENCFF001IFQ/@@download/ENCFF001IFQ.bam mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF001XUZ bed narrowPeak peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFQ 243523 Barbara Wold, Caltech be16de20593ae24edac696222a67d168 https://www.encodeproject.org/files/ENCFF001XUZ/@@download/ENCFF001XUZ.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF441FAX bam unfiltered alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFN, ENCFF001IFO, ENCFF018NEO 1461711206 ENCODE Processing Pipeline 117ac352b8ae200b6ea3b3401ccf34d6 https://www.encodeproject.org/files/ENCFF441FAX/@@download/ENCFF441FAX.bam mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF570IDO bam alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFN, ENCFF001IFO, ENCFF018NEO 276029212 ENCODE Processing Pipeline 7d4e5d305e41579256dd4c992e1364a6 https://www.encodeproject.org/files/ENCFF570IDO/@@download/ENCFF570IDO.bam mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF542EGC bigWig signal p-value ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF570IDO 284294296 ENCODE Processing Pipeline 23dfc7edcf61c9ed8fea4e4417c318ae https://www.encodeproject.org/files/ENCFF542EGC/@@download/ENCFF542EGC.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF967HVW bigWig fold change over control ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF570IDO 124290303 ENCODE Processing Pipeline 57bff278394c6ba920d63cbb2beed02c https://www.encodeproject.org/files/ENCFF967HVW/@@download/ENCFF967HVW.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF616GST bed narrowPeak peaks and background as input for IDR ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF570IDO 2631701 ENCODE Processing Pipeline def15513cd32b971744d54d7ef63901e https://www.encodeproject.org/files/ENCFF616GST/@@download/ENCFF616GST.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF408CHO bigBed narrowPeak peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF616GST 5711040 ENCODE Processing Pipeline a2b280dfa6bcda89c3249afc7de65384 https://www.encodeproject.org/files/ENCFF408CHO/@@download/ENCFF408CHO.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF196HUO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF616GST 63937 ENCODE Processing Pipeline 2640fc0d663cd1f205a72e8c7ee55dba https://www.encodeproject.org/files/ENCFF196HUO/@@download/ENCFF196HUO.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF404WPO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF196HUO 148554 ENCODE Processing Pipeline ed706652dcdaaaec48057609db5b8a72 https://www.encodeproject.org/files/ENCFF404WPO/@@download/ENCFF404WPO.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth, insufficient read length ENCFF001IDN bam alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IEL 1034271498 Barbara Wold, Caltech 424b19dd0863754dce82702375d58d72 https://www.encodeproject.org/files/ENCFF001IDN/@@download/ENCFF001IDN.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IDO bigBed narrowPeak peaks ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUW 208098 Barbara Wold, Caltech 26ea7452bca031ccfb7a09c1f4a78124 https://www.encodeproject.org/files/ENCFF001IDO/@@download/ENCFF001IDO.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IDQ bigWig signal ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDN 74880827 Barbara Wold, Caltech 0c970704a3d5a8b3c2eb461e31112ad0 https://www.encodeproject.org/files/ENCFF001IDQ/@@download/ENCFF001IDQ.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IEL fastq reads ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 36 single-ended 924713947 Barbara Wold, Caltech 123a1f5c44fe1641162f67ae54da87c1 https://www.encodeproject.org/files/ENCFF001IEL/@@download/ENCFF001IEL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released low read length, mild to moderate bottlenecking, inconsistent control read length, moderate library complexity insufficient read depth ENCFF001XUW bed narrowPeak peaks ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDN 105916 Barbara Wold, Caltech f6cd966c8d996d10147c1c026d436a04 https://www.encodeproject.org/files/ENCFF001XUW/@@download/ENCFF001XUW.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF869INI bam unfiltered alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 36 ENCFF001IEL, ENCFF018NEO 1125023914 ENCODE Processing Pipeline 3a038f8e5cd9a8dcc4c190bbb5b551f5 https://www.encodeproject.org/files/ENCFF869INI/@@download/ENCFF869INI.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF694XWD bam alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 36 ENCFF001IEL, ENCFF018NEO 347150574 ENCODE Processing Pipeline 7bad4e1609275f190dc904484fe076a1 https://www.encodeproject.org/files/ENCFF694XWD/@@download/ENCFF694XWD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001MPS bigBed broadPeak peaks ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFJ 501928 Ross Hardison, PennState 729bbb5ad9abad8894666d1bf293b772 https://www.encodeproject.org/files/ENCFF001MPS/@@download/ENCFF001MPS.bigBed mm9 released mild to moderate bottlenecking ENCFF001MPT bam alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MPX 3081618365 Ross Hardison, PennState 6b3dcb69b9d3296c995660e4310e482a https://www.encodeproject.org/files/ENCFF001MPT/@@download/ENCFF001MPT.bam mm9 released mild to moderate bottlenecking ENCFF001MPU bigWig signal ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4554135425 Ross Hardison, PennState f6d36a691169d47b280dd9e72333b204 https://www.encodeproject.org/files/ENCFF001MPU/@@download/ENCFF001MPU.bigWig mm9 released mild to moderate bottlenecking missing derived_from ENCFF001MPX fastq reads ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 55 single-ended 2676872071 Ross Hardison, PennState fc2b4c358006823c419c9f12dc20fc08 https://www.encodeproject.org/files/ENCFF001MPX/@@download/ENCFF001MPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MQW/ released mild to moderate bottlenecking, inconsistent control read length ENCFF001YFJ bed broadPeak peaks ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 213679 Ross Hardison, PennState 75330ba3fa7d7560c54e2b52658f63ef https://www.encodeproject.org/files/ENCFF001YFJ/@@download/ENCFF001YFJ.bed.gz mm9 released mild to moderate bottlenecking missing derived_from ENCFF932KNT bam unfiltered alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MPX, ENCFF018NEO 2919002318 ENCODE Processing Pipeline cc9fdb9708faeb1639b87b6e4ec7fe85 https://www.encodeproject.org/files/ENCFF932KNT/@@download/ENCFF932KNT.bam mm10 released mild to moderate bottlenecking ENCFF503ZWH bam alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MPX, ENCFF018NEO 1952467096 ENCODE Processing Pipeline c0480c609445622dced72b743f6764ff https://www.encodeproject.org/files/ENCFF503ZWH/@@download/ENCFF503ZWH.bam mm10 released mild to moderate bottlenecking ENCFF001LTK bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LTR 185659890 Bing Ren, UCSD 478eacde64fc5716e3735c9f31883b86 https://www.encodeproject.org/files/ENCFF001LTK/@@download/ENCFF001LTK.bam mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTN bigBed broadPeak peaks ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBF 329653 Bing Ren, UCSD eebd22e1d1d62247bc686aa6b6aa7ae5 https://www.encodeproject.org/files/ENCFF001LTN/@@download/ENCFF001LTN.bigBed mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTO bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTX 952996533 Bing Ren, UCSD 3df2c15c0fbfc7f123078129d8896da7 https://www.encodeproject.org/files/ENCFF001LTO/@@download/ENCFF001LTO.bam mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTR fastq reads ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 178693182 Bing Ren, UCSD e31c12d864929dc493483dc7c6f688de https://www.encodeproject.org/files/ENCFF001LTR/@@download/ENCFF001LTR.fastq.gz Illumina Genome Analyzer II /files/ENCFF786ODW/ released mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTS bigWig signal ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LTK, ENCFF001LTO 65820298 Bing Ren, UCSD 75568f2de3e6decf1dda62c845685d93 https://www.encodeproject.org/files/ENCFF001LTS/@@download/ENCFF001LTS.bigWig mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTX fastq reads ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 999605431 Bing Ren, UCSD a997b11a58c8a7116f3b13569159b463 https://www.encodeproject.org/files/ENCFF001LTX/@@download/ENCFF001LTX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001YBF bed broadPeak peaks ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LTK, ENCFF001LTO 201288 Bing Ren, UCSD 5d3ae942b79391265fe2e37230f1b348 https://www.encodeproject.org/files/ENCFF001YBF/@@download/ENCFF001YBF.bed.gz mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF427VLH bam unfiltered alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTR, ENCFF018NEO 199538742 ENCODE Processing Pipeline a27ab651f6965396fee2191eacfca71f https://www.encodeproject.org/files/ENCFF427VLH/@@download/ENCFF427VLH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF717PNP bam unfiltered alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTX, ENCFF018NEO 981161050 ENCODE Processing Pipeline 5883f67adb14ef662ba87b9ea89fc851 https://www.encodeproject.org/files/ENCFF717PNP/@@download/ENCFF717PNP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF692RQR bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTR, ENCFF018NEO 110683993 ENCODE Processing Pipeline 480d7d9a9c102d9360cd8f4440032bcf https://www.encodeproject.org/files/ENCFF692RQR/@@download/ENCFF692RQR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF038FZW bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTX, ENCFF018NEO 200699036 ENCODE Processing Pipeline 5eb0f861d497d02e5142a2ad329a9389 https://www.encodeproject.org/files/ENCFF038FZW/@@download/ENCFF038FZW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001MUX bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MVC 805938098 Ross Hardison, PennState 9253385fc8d686a273cd1aa877b8429f https://www.encodeproject.org/files/ENCFF001MUX/@@download/ENCFF001MUX.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUY bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 ENCFF001MVJ 2932779832 Ross Hardison, PennState e47d76948c37098ee39eed00b3c40a9c https://www.encodeproject.org/files/ENCFF001MUY/@@download/ENCFF001MUY.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUZ bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE ENCFF001YGN 313357 Ross Hardison, PennState d456065861f660e30d0bfc519b6c5927 https://www.encodeproject.org/files/ENCFF001MUZ/@@download/ENCFF001MUZ.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVA bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF001MVL 6479054838 Ross Hardison, PennState 1f981b0244270831753544d61a8ace8c https://www.encodeproject.org/files/ENCFF001MVA/@@download/ENCFF001MVA.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVB bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 ENCFF001MVN 7106001756 Ross Hardison, PennState 06887208e2905733ded0a434e4b60eda https://www.encodeproject.org/files/ENCFF001MVB/@@download/ENCFF001MVB.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVC fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 629059358 Ross Hardison, PennState 9101d7b287d08b91fe7a2914cc9246da https://www.encodeproject.org/files/ENCFF001MVC/@@download/ENCFF001MVC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MUT/ released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVD bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YGO 208590 Ross Hardison, PennState 93990fd96770414207301adb7c1bc2e7 https://www.encodeproject.org/files/ENCFF001MVD/@@download/ENCFF001MVD.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVE bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 ENCFF001YGP 260874 Ross Hardison, PennState f504acf51ddcfdb23f20379bb98da7c5 https://www.encodeproject.org/files/ENCFF001MVE/@@download/ENCFF001MVE.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVF bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 ENCFF001YGQ 216085 Ross Hardison, PennState cd8298a803bfa75bc71be4b6fe93bc2b https://www.encodeproject.org/files/ENCFF001MVF/@@download/ENCFF001MVF.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVG bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 ENCFF001YGR 409835 Ross Hardison, PennState 047d3b4e4b69117bb06b80c40e198f9e https://www.encodeproject.org/files/ENCFF001MVG/@@download/ENCFF001MVG.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVH bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 3169443045 Ross Hardison, PennState 934178034a803071c2c3134e12d38e7c https://www.encodeproject.org/files/ENCFF001MVH/@@download/ENCFF001MVH.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MVI bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 5437765102 Ross Hardison, PennState 0185ebf148aef9a8137c1d2a2c04561c https://www.encodeproject.org/files/ENCFF001MVI/@@download/ENCFF001MVI.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MVJ fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 45 single-ended 2422864865 Ross Hardison, PennState 66c20c812b50f1bdca3489b48df92c50 https://www.encodeproject.org/files/ENCFF001MVJ/@@download/ENCFF001MVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, low read depth, mixed read lengths, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001MVK bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 5919870621 Ross Hardison, PennState 83d5a198c4b830d225f8ab24530df4c3 https://www.encodeproject.org/files/ENCFF001MVK/@@download/ENCFF001MVK.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MVL fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 55 single-ended 5721553125 Ross Hardison, PennState 90922c1d48a6749802f792f35a42a2b3 https://www.encodeproject.org/files/ENCFF001MVL/@@download/ENCFF001MVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MVM bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 4363082560 Ross Hardison, PennState 5c874ad97f06bd67fa5ae4fd8c3ffcf4 https://www.encodeproject.org/files/ENCFF001MVM/@@download/ENCFF001MVM.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MVN fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 48 single-ended 6252887485 Ross Hardison, PennState f3cf3f69dab547acfe0b4632f1b207d6 https://www.encodeproject.org/files/ENCFF001MVN/@@download/ENCFF001MVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, low read depth, mixed read lengths, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001MVO bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 6722126439 Ross Hardison, PennState 5bf91408e36dd4b4547eb2ed19e1889a https://www.encodeproject.org/files/ENCFF001MVO/@@download/ENCFF001MVO.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGN bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 181162 Ross Hardison, PennState 3794744ceb668ba1cb24bbddbeb5f818 https://www.encodeproject.org/files/ENCFF001YGN/@@download/ENCFF001YGN.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGO bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 81623 Ross Hardison, PennState 8c2a71b0c3084177cb5bcc25eecc6ee1 https://www.encodeproject.org/files/ENCFF001YGO/@@download/ENCFF001YGO.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGP bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 129645 Ross Hardison, PennState 5f9741f3d40d0664d8940cd29aae327f https://www.encodeproject.org/files/ENCFF001YGP/@@download/ENCFF001YGP.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGQ bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 110476 Ross Hardison, PennState e41644f7b384f22f21e67cf2c09d055b https://www.encodeproject.org/files/ENCFF001YGQ/@@download/ENCFF001YGQ.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGR bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 239107 Ross Hardison, PennState 76918c95111ba9a7c4b1dad35727844e https://www.encodeproject.org/files/ENCFF001YGR/@@download/ENCFF001YGR.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF680RVV bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MVC, ENCFF018NEO 851333234 ENCODE Processing Pipeline a069d6ee2569286de724e35f003a8238 https://www.encodeproject.org/files/ENCFF680RVV/@@download/ENCFF680RVV.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF416IJR bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MVC, ENCFF018NEO 579927219 ENCODE Processing Pipeline dd598c0a8d07b837b43a84d7c81be28c https://www.encodeproject.org/files/ENCFF416IJR/@@download/ENCFF416IJR.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF513GMN bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MVL, ENCFF018NEO 5670729288 ENCODE Processing Pipeline e07511cbb722ae98ca932c104ac64ec6 https://www.encodeproject.org/files/ENCFF513GMN/@@download/ENCFF513GMN.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF077PCC bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 41 ENCFF001MVJ, ENCFF018NEO 2922757690 ENCODE Processing Pipeline f7f962247d44ab23cb465e32256b7136 https://www.encodeproject.org/files/ENCFF077PCC/@@download/ENCFF077PCC.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF047FOQ bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 41 ENCFF001MVJ, ENCFF018NEO 1941541392 ENCODE Processing Pipeline 3059e509426fdc04e2e90d44ae298bc2 https://www.encodeproject.org/files/ENCFF047FOQ/@@download/ENCFF047FOQ.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF870QNB bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 41 ENCFF001MVN, ENCFF018NEO 6850427844 ENCODE Processing Pipeline 5aec4ac7204447db960c5fae11eb88cd https://www.encodeproject.org/files/ENCFF870QNB/@@download/ENCFF870QNB.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF913KOC bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MVL, ENCFF018NEO 3894215553 ENCODE Processing Pipeline af206cf0e578c71edd358502a8b398b1 https://www.encodeproject.org/files/ENCFF913KOC/@@download/ENCFF913KOC.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF093LQI bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 41 ENCFF001MVN, ENCFF018NEO 4643217061 ENCODE Processing Pipeline 69726547b3287bab8d257533ede79f3e https://www.encodeproject.org/files/ENCFF093LQI/@@download/ENCFF093LQI.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001OBD bigBed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YKK 154187 Michael Snyder, Stanford 686fd47c02ecdb84308c8fa281c46872 https://www.encodeproject.org/files/ENCFF001OBD/@@download/ENCFF001OBD.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBE bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001OBF 471432179 Michael Snyder, Stanford 591a19e266d50e5f4098b104ccd630d7 https://www.encodeproject.org/files/ENCFF001OBE/@@download/ENCFF001OBE.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBF fastq reads ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1088099293 Michael Snyder, Stanford 19d8aea39e93d119e68090a7c5c34fb7 https://www.encodeproject.org/files/ENCFF001OBF/@@download/ENCFF001OBF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBH fastq reads ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 880089580 Michael Snyder, Stanford 64a3973a2631d2d9e7788ebf2778bff5 https://www.encodeproject.org/files/ENCFF001OBH/@@download/ENCFF001OBH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBK bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001OBH 456315717 Michael Snyder, Stanford e1ec088c73366e53ec219175dc138b9e https://www.encodeproject.org/files/ENCFF001OBK/@@download/ENCFF001OBK.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBL bigWig signal ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OBE, ENCFF001OBK 154232464 Michael Snyder, Stanford 094d8ade166983bc51e37d19e3c9b643 https://www.encodeproject.org/files/ENCFF001OBL/@@download/ENCFF001OBL.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YKK bed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OBE, ENCFF001OBK 43686 Michael Snyder, Stanford f498776d074cb53f697bf0d8b7707385 https://www.encodeproject.org/files/ENCFF001YKK/@@download/ENCFF001YKK.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF110GID bam unfiltered alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OBH, ENCFF018NEO 980370221 ENCODE Processing Pipeline 2c77564b2c0b509796531600390c6109 https://www.encodeproject.org/files/ENCFF110GID/@@download/ENCFF110GID.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF511LLX bam unfiltered alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OBF, ENCFF018NEO 1144030005 ENCODE Processing Pipeline 828590f86b95b28a02bfa1c789fffcfb https://www.encodeproject.org/files/ENCFF511LLX/@@download/ENCFF511LLX.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF801WZN bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OBH, ENCFF018NEO 625981038 ENCODE Processing Pipeline 9e4b19c458c706a3a528945741164285 https://www.encodeproject.org/files/ENCFF801WZN/@@download/ENCFF801WZN.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF369IFU bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OBF, ENCFF018NEO 576855560 ENCODE Processing Pipeline 0a9db6f02ac4fda55d07db688def80bf https://www.encodeproject.org/files/ENCFF369IFU/@@download/ENCFF369IFU.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF972TRK bigWig signal p-value ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF369IFU, ENCFF801WZN 360595954 ENCODE Processing Pipeline cd94696e36cbe46dfa5850bde39cd8c6 https://www.encodeproject.org/files/ENCFF972TRK/@@download/ENCFF972TRK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF133PTA bigWig signal p-value ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF369IFU 292561761 ENCODE Processing Pipeline a967522a0a42b398cf8851a02a5adb33 https://www.encodeproject.org/files/ENCFF133PTA/@@download/ENCFF133PTA.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF046NFM bigWig signal p-value ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF801WZN 273080998 ENCODE Processing Pipeline 5ed0254197d37312a029d984d82501a5 https://www.encodeproject.org/files/ENCFF046NFM/@@download/ENCFF046NFM.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF592DIZ bigWig fold change over control ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF369IFU 260517104 ENCODE Processing Pipeline 974865756b9d969714745151b07a27fe https://www.encodeproject.org/files/ENCFF592DIZ/@@download/ENCFF592DIZ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF447PPK bigWig fold change over control ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF801WZN 278473508 ENCODE Processing Pipeline c08813d449e1030551511cbc59131d5c https://www.encodeproject.org/files/ENCFF447PPK/@@download/ENCFF447PPK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF585YOH bigWig fold change over control ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF369IFU, ENCFF801WZN 479838114 ENCODE Processing Pipeline 4ec02c32ad4eb01755060f93afa17caf https://www.encodeproject.org/files/ENCFF585YOH/@@download/ENCFF585YOH.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF470PMX bed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF369IFU 4741461 ENCODE Processing Pipeline 904209b0e43904dc130628aa6cb45b57 https://www.encodeproject.org/files/ENCFF470PMX/@@download/ENCFF470PMX.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF014SUM bed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF801WZN 4627809 ENCODE Processing Pipeline 3911010d5ceb1d2d64aa2cefd1e6430d https://www.encodeproject.org/files/ENCFF014SUM/@@download/ENCFF014SUM.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF745JTK bed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF369IFU, ENCFF801WZN 5355939 ENCODE Processing Pipeline 10bc6adfd860247cb1ce15f3cc7dca17 https://www.encodeproject.org/files/ENCFF745JTK/@@download/ENCFF745JTK.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF066CEV bed narrowPeak optimal idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF014SUM, ENCFF470PMX, ENCFF547MET, ENCFF745JTK 85661 ENCODE Processing Pipeline 369dc9b71be1b62101d7682e26dc451c https://www.encodeproject.org/files/ENCFF066CEV/@@download/ENCFF066CEV.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF349UZL bigBed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF470PMX 10537897 ENCODE Processing Pipeline 44004118070e686126563b34950069b6 https://www.encodeproject.org/files/ENCFF349UZL/@@download/ENCFF349UZL.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF428TZR bigBed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF014SUM 10559415 ENCODE Processing Pipeline b5436595c8e6ec8ea4d58ddcd53ff2cc https://www.encodeproject.org/files/ENCFF428TZR/@@download/ENCFF428TZR.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF063JON bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF242KCM 187798 ENCODE Processing Pipeline 5933e5f97de30014bb028a9281eab4d5 https://www.encodeproject.org/files/ENCFF063JON/@@download/ENCFF063JON.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF611LJI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF066CEV 216983 ENCODE Processing Pipeline b0f8f387e6bedf22237114f201aa310f https://www.encodeproject.org/files/ENCFF611LJI/@@download/ENCFF611LJI.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF225OPK bigBed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF745JTK 10786266 ENCODE Processing Pipeline 45baa5b6f810491ad4de7cd3f8f6e2ee https://www.encodeproject.org/files/ENCFF225OPK/@@download/ENCFF225OPK.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF242KCM bed narrowPeak conservative idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF014SUM, ENCFF470PMX, ENCFF547MET, ENCFF745JTK 67241 ENCODE Processing Pipeline b260365e259617b7ec69098f452b2381 https://www.encodeproject.org/files/ENCFF242KCM/@@download/ENCFF242KCM.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF205UPE fastq reads ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 652701041 Michael Snyder, Stanford cf7d157dcf2af337659f344f720e902a https://www.encodeproject.org/files/ENCFF205UPE/@@download/ENCFF205UPE.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF845NFO fastq reads ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 838164483 Michael Snyder, Stanford 8ca8d42db252c9c2ee8c49b402a0bd59 https://www.encodeproject.org/files/ENCFF845NFO/@@download/ENCFF845NFO.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF846TAQ bed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF440BSC, ENCFF931LLJ 170634 Michael Snyder, Stanford e99cdf49d17bddee8401c920a73f96df https://www.encodeproject.org/files/ENCFF846TAQ/@@download/ENCFF846TAQ.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF440BSC bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF845NFO 551728866 Michael Snyder, Stanford 4187371152083522ce4e4a9106919d42 https://www.encodeproject.org/files/ENCFF440BSC/@@download/ENCFF440BSC.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF931LLJ bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF205UPE 567728956 Michael Snyder, Stanford 5f9a6d35eeb6720b60d99efbfa85c143 https://www.encodeproject.org/files/ENCFF931LLJ/@@download/ENCFF931LLJ.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF364LWZ bigBed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF846TAQ 362563 ENCODE Consortium ddc1fcd763c916741f4cd4665534413d https://www.encodeproject.org/files/ENCFF364LWZ/@@download/ENCFF364LWZ.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF108LUA bam unfiltered alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF845NFO 939189261 ENCODE Processing Pipeline 23f73c3aac10064dcf3f8a8fec1bce3a https://www.encodeproject.org/files/ENCFF108LUA/@@download/ENCFF108LUA.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF350DDR bam unfiltered alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF205UPE 813859442 ENCODE Processing Pipeline 4539f50b035368d8ccf6930af65d934a https://www.encodeproject.org/files/ENCFF350DDR/@@download/ENCFF350DDR.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF679SCA bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF845NFO 220445203 ENCODE Processing Pipeline 7f87615c9ed9f10d6d2fa538bc5cdd32 https://www.encodeproject.org/files/ENCFF679SCA/@@download/ENCFF679SCA.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF373DGP bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF205UPE 432421217 ENCODE Processing Pipeline cf10987ec35daca88fe620d4add0d42a https://www.encodeproject.org/files/ENCFF373DGP/@@download/ENCFF373DGP.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF048IQJ bigWig signal p-value ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF373DGP 247758690 ENCODE Processing Pipeline 5f6760f845e9cebbeb31e5cbf3ef1ad7 https://www.encodeproject.org/files/ENCFF048IQJ/@@download/ENCFF048IQJ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF205MJL bigWig fold change over control ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF679SCA 112495098 ENCODE Processing Pipeline b2b957de772eee1079e87c06a6369c54 https://www.encodeproject.org/files/ENCFF205MJL/@@download/ENCFF205MJL.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF329MBZ bigWig signal p-value ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF679SCA 222928453 ENCODE Processing Pipeline a7678a9b5ce6cf2673a553600608c3d9 https://www.encodeproject.org/files/ENCFF329MBZ/@@download/ENCFF329MBZ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF842QSG bigWig signal p-value ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF373DGP, ENCFF679SCA 280988693 ENCODE Processing Pipeline 2898365d4a5255479b6bf0fc2483d2c6 https://www.encodeproject.org/files/ENCFF842QSG/@@download/ENCFF842QSG.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF976FMK bigWig fold change over control ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF373DGP 200654738 ENCODE Processing Pipeline 2c1fb517199b1f1470f87a3d7ece87d4 https://www.encodeproject.org/files/ENCFF976FMK/@@download/ENCFF976FMK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF774CYI bigBed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF958NPV 10566040 ENCODE Processing Pipeline 1e63efe562e2c7e21910cffa64632f81 https://www.encodeproject.org/files/ENCFF774CYI/@@download/ENCFF774CYI.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF623PQH bigWig fold change over control ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF373DGP, ENCFF679SCA 275365478 ENCODE Processing Pipeline 8bed9fc23a9d884d71d0fe068985eaa6 https://www.encodeproject.org/files/ENCFF623PQH/@@download/ENCFF623PQH.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF314KST bigBed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF150DQT 10111872 ENCODE Processing Pipeline 5b0f4dd0fbb8e95de6af1424712d41f8 https://www.encodeproject.org/files/ENCFF314KST/@@download/ENCFF314KST.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF327ALQ bed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF679SCA 2389669 ENCODE Processing Pipeline dfe4035777357f9f894d974ef040367d https://www.encodeproject.org/files/ENCFF327ALQ/@@download/ENCFF327ALQ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF150DQT bed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF373DGP 4385430 ENCODE Processing Pipeline 736c61d48336e126814fb16306fe87f7 https://www.encodeproject.org/files/ENCFF150DQT/@@download/ENCFF150DQT.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF319SNB bigBed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF327ALQ 4751587 ENCODE Processing Pipeline 93f976997cfb86b85bd76f4d57907cbc https://www.encodeproject.org/files/ENCFF319SNB/@@download/ENCFF319SNB.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF524ZYV bed narrowPeak conservative idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF150DQT, ENCFF327ALQ, ENCFF547MET, ENCFF958NPV 185887 ENCODE Processing Pipeline 43236f9410529d2cb5b354054fd9ed1b https://www.encodeproject.org/files/ENCFF524ZYV/@@download/ENCFF524ZYV.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF958NPV bed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF373DGP, ENCFF679SCA 4761818 ENCODE Processing Pipeline d1494a7080857194aecb9aab660ace3e https://www.encodeproject.org/files/ENCFF958NPV/@@download/ENCFF958NPV.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF443MGH bed narrowPeak optimal idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF150DQT, ENCFF327ALQ, ENCFF547MET, ENCFF958NPV 200903 ENCODE Processing Pipeline 45883363b308683581b848b51f76a685 https://www.encodeproject.org/files/ENCFF443MGH/@@download/ENCFF443MGH.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF470IRY bigBed narrowPeak conservative idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF524ZYV 398973 ENCODE Processing Pipeline 8ed88bab44961846a8674da9a85b12e0 https://www.encodeproject.org/files/ENCFF470IRY/@@download/ENCFF470IRY.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF021XRM bigBed narrowPeak optimal idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF443MGH 419430 ENCODE Processing Pipeline a8c02768f5d5852a306c802fad77e9ae https://www.encodeproject.org/files/ENCFF021XRM/@@download/ENCFF021XRM.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001NWC bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NWN 414324315 Michael Snyder, Stanford fde7a1efd99595b96e82d01eb4ce8ae4 https://www.encodeproject.org/files/ENCFF001NWC/@@download/ENCFF001NWC.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NWD bigBed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJU 690480 Michael Snyder, Stanford 132596b484aa17d9698a81185c72a022 https://www.encodeproject.org/files/ENCFF001NWD/@@download/ENCFF001NWD.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NWE bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NWM 487404349 Michael Snyder, Stanford f34585fc7453624ef461928600123652 https://www.encodeproject.org/files/ENCFF001NWE/@@download/ENCFF001NWE.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NWF bigWig signal ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWC, ENCFF001NWE 335898901 Michael Snyder, Stanford c4f3b093c23b26daf5ed05d5f94bee57 https://www.encodeproject.org/files/ENCFF001NWF/@@download/ENCFF001NWF.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NWM fastq reads ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1010181748 Michael Snyder, Stanford 216a85454f84e59602c8b8fda8f1a9d6 https://www.encodeproject.org/files/ENCFF001NWM/@@download/ENCFF001NWM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NWN fastq reads ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1178409479 Michael Snyder, Stanford f48252e5837f1a4326c431586f48ea3e https://www.encodeproject.org/files/ENCFF001NWN/@@download/ENCFF001NWN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001YJU bed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWC, ENCFF001NWE 290699 Michael Snyder, Stanford 57bc5e40b33f16ca45b245c5e46ebdaa https://www.encodeproject.org/files/ENCFF001YJU/@@download/ENCFF001YJU.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF975EFZ bam unfiltered alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWM, ENCFF018NEO 1167519013 ENCODE Processing Pipeline 46342ed748508a2296c9935d0b485b67 https://www.encodeproject.org/files/ENCFF975EFZ/@@download/ENCFF975EFZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF662OAR bam unfiltered alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWN, ENCFF018NEO 1341519396 ENCODE Processing Pipeline fc650a2bb1240d59f9ee3a06610d49b3 https://www.encodeproject.org/files/ENCFF662OAR/@@download/ENCFF662OAR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF882LCZ bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWN, ENCFF018NEO 787576613 ENCODE Processing Pipeline 1b90a78a1bab67d1b9a27dd79fc8aff4 https://www.encodeproject.org/files/ENCFF882LCZ/@@download/ENCFF882LCZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF967BIA bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWM, ENCFF018NEO 748085534 ENCODE Processing Pipeline b87d4bcd5983069eefba01f5a1bf4b48 https://www.encodeproject.org/files/ENCFF967BIA/@@download/ENCFF967BIA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF492VIQ bigWig fold change over control ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF967BIA 315864352 ENCODE Processing Pipeline d820cf801b4a13788be85ab3445c2d59 https://www.encodeproject.org/files/ENCFF492VIQ/@@download/ENCFF492VIQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF780AWC bigWig fold change over control ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF882LCZ, ENCFF967BIA 513736489 ENCODE Processing Pipeline 31e428dc0704d5faf2bd35a5a72462b0 https://www.encodeproject.org/files/ENCFF780AWC/@@download/ENCFF780AWC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF745WHA bed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF882LCZ 6053670 ENCODE Processing Pipeline bb170ba5a8b9add20515131ec6100273 https://www.encodeproject.org/files/ENCFF745WHA/@@download/ENCFF745WHA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF019YYF bed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF967BIA 6070535 ENCODE Processing Pipeline 429914b8398717948bf47091608227f4 https://www.encodeproject.org/files/ENCFF019YYF/@@download/ENCFF019YYF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF060SFQ bed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF882LCZ, ENCFF967BIA 6624448 ENCODE Processing Pipeline 3e074efcfc5f8273ee51e4bdb1825f86 https://www.encodeproject.org/files/ENCFF060SFQ/@@download/ENCFF060SFQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF308ZDK bigWig signal p-value ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF882LCZ 296484909 ENCODE Processing Pipeline 19b7d440f745834803dc484562e62601 https://www.encodeproject.org/files/ENCFF308ZDK/@@download/ENCFF308ZDK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF614WMV bigWig signal p-value ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF967BIA 298358244 ENCODE Processing Pipeline b172953dfabd0cba0f4b5772e9479808 https://www.encodeproject.org/files/ENCFF614WMV/@@download/ENCFF614WMV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF293THU bigWig signal p-value ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF882LCZ, ENCFF967BIA 294804401 ENCODE Processing Pipeline 913de16adfbf831c21cdec325fd33aa6 https://www.encodeproject.org/files/ENCFF293THU/@@download/ENCFF293THU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF841TLD bigWig fold change over control ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF882LCZ 297694885 ENCODE Processing Pipeline a5b98d43cd3c7d90b055a1f149fc43b8 https://www.encodeproject.org/files/ENCFF841TLD/@@download/ENCFF841TLD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF766FEW bigBed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF745WHA 12682400 ENCODE Processing Pipeline 2e319b7c97d3bdd0c3272a19ecb06af2 https://www.encodeproject.org/files/ENCFF766FEW/@@download/ENCFF766FEW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF963ABX bigBed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF019YYF 12871794 ENCODE Processing Pipeline 1f9f4ae3b51ad2c42666fe05c8a9fa34 https://www.encodeproject.org/files/ENCFF963ABX/@@download/ENCFF963ABX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF091HDM bigBed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF060SFQ 12913435 ENCODE Processing Pipeline 5cbd5386b39293d47a4b6a04ff07d0bf https://www.encodeproject.org/files/ENCFF091HDM/@@download/ENCFF091HDM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF500BVN bed narrowPeak conservative idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF019YYF, ENCFF060SFQ, ENCFF547MET, ENCFF745WHA 684702 ENCODE Processing Pipeline ad1fac54056f7a328580b012c5d72f47 https://www.encodeproject.org/files/ENCFF500BVN/@@download/ENCFF500BVN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF124TRY bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500BVN 1635308 ENCODE Processing Pipeline 71064188490596d7c1a01aeb67abf98d https://www.encodeproject.org/files/ENCFF124TRY/@@download/ENCFF124TRY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF473GQJ bed narrowPeak optimal idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF019YYF, ENCFF060SFQ, ENCFF547MET, ENCFF745WHA 731093 ENCODE Processing Pipeline 0d2b8c6d083a873f54e06433cf2ad03a https://www.encodeproject.org/files/ENCFF473GQJ/@@download/ENCFF473GQJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF132BSG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF473GQJ 1730342 ENCODE Processing Pipeline f7a064e60bb2eec88edfa73bf78b34ca https://www.encodeproject.org/files/ENCFF132BSG/@@download/ENCFF132BSG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF443PSH fastq reads ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 674211387 Michael Snyder, Stanford 647e898a97f962f7011fa0cbaffcfac8 https://www.encodeproject.org/files/ENCFF443PSH/@@download/ENCFF443PSH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF319ABF fastq reads ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 834889750 Michael Snyder, Stanford b5445b379112081796497099f3836cce https://www.encodeproject.org/files/ENCFF319ABF/@@download/ENCFF319ABF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF052XAJ bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF443PSH 656932299 Michael Snyder, Stanford 8dfe1b7f8e0bdf8130ada1b19d80a3f2 https://www.encodeproject.org/files/ENCFF052XAJ/@@download/ENCFF052XAJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF540GGK bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF319ABF 800635962 Michael Snyder, Stanford ab78c5c8ccd736ebba54fb0a3b4a4e75 https://www.encodeproject.org/files/ENCFF540GGK/@@download/ENCFF540GGK.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF148PLM bed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF052XAJ, ENCFF540GGK 445416 Michael Snyder, Stanford 3d702a20f7ea9a049940e9064bea01dd https://www.encodeproject.org/files/ENCFF148PLM/@@download/ENCFF148PLM.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF259NQC bigBed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF148PLM 950646 ENCODE Consortium f8503c319c9f68c6ff3d7257d889c6b3 https://www.encodeproject.org/files/ENCFF259NQC/@@download/ENCFF259NQC.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF391DJB bam unfiltered alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF443PSH 910205267 ENCODE Processing Pipeline d581471ed1b0681aad4fafdf852cfda5 https://www.encodeproject.org/files/ENCFF391DJB/@@download/ENCFF391DJB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF806JZI bam unfiltered alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF319ABF 1087082338 ENCODE Processing Pipeline 762338c22eb2d6e2664f45e75e3f51c1 https://www.encodeproject.org/files/ENCFF806JZI/@@download/ENCFF806JZI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF025IEG bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF319ABF 677545648 ENCODE Processing Pipeline 9a1d57802907fc3db32fa8ee1ad4e863 https://www.encodeproject.org/files/ENCFF025IEG/@@download/ENCFF025IEG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF678DXL bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF443PSH 570828135 ENCODE Processing Pipeline b641bb9c6956e42b8e16e550b1dd1935 https://www.encodeproject.org/files/ENCFF678DXL/@@download/ENCFF678DXL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF538EWO bigWig signal p-value ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF025IEG, ENCFF339ZWC 239270968 ENCODE Processing Pipeline 9c380e671a0afce4c32bb0bd6c444706 https://www.encodeproject.org/files/ENCFF538EWO/@@download/ENCFF538EWO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF093ARP bigWig signal p-value ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF678DXL 240118245 ENCODE Processing Pipeline ee8a3ae11ee9e32757da50164e2e5722 https://www.encodeproject.org/files/ENCFF093ARP/@@download/ENCFF093ARP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF280SPD bigWig signal p-value ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF025IEG, ENCFF339ZWC, ENCFF678DXL 208521779 ENCODE Processing Pipeline c66ef1e5a47f13b0d29713ce454f70c7 https://www.encodeproject.org/files/ENCFF280SPD/@@download/ENCFF280SPD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF145HRX bigWig fold change over control ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF678DXL 246623980 ENCODE Processing Pipeline e836d3576279ba408467df9d1073e807 https://www.encodeproject.org/files/ENCFF145HRX/@@download/ENCFF145HRX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF199YQB bigWig fold change over control ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF025IEG, ENCFF339ZWC, ENCFF678DXL 438509849 ENCODE Processing Pipeline 5ec5200ad3ebceac9dcf386f8e890354 https://www.encodeproject.org/files/ENCFF199YQB/@@download/ENCFF199YQB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF704CDO bigWig fold change over control ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF025IEG, ENCFF339ZWC 271480597 ENCODE Processing Pipeline 046942028310bb2b2e82f0b9d62acc62 https://www.encodeproject.org/files/ENCFF704CDO/@@download/ENCFF704CDO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF596FSM bed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF678DXL 4992511 ENCODE Processing Pipeline 5cb4ac4717aaf65cca672b7644ca9df4 https://www.encodeproject.org/files/ENCFF596FSM/@@download/ENCFF596FSM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF498DFC bed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF025IEG, ENCFF339ZWC, ENCFF678DXL 5883179 ENCODE Processing Pipeline 3143289aa86630fd8b6f745e2365a2cb https://www.encodeproject.org/files/ENCFF498DFC/@@download/ENCFF498DFC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF704GUT bed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF025IEG, ENCFF339ZWC 5280894 ENCODE Processing Pipeline 8aebba7ba48a1431e7ba1121fd6ef6aa https://www.encodeproject.org/files/ENCFF704GUT/@@download/ENCFF704GUT.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF315WGV bigBed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF596FSM 12560901 ENCODE Processing Pipeline ff04c71f8b9abc5f111501340b08cfba https://www.encodeproject.org/files/ENCFF315WGV/@@download/ENCFF315WGV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF849PKA bigBed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF498DFC 12911113 ENCODE Processing Pipeline f8af56bf18bf456845dc44f19037bb76 https://www.encodeproject.org/files/ENCFF849PKA/@@download/ENCFF849PKA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF205UNE bigBed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF704GUT 12625118 ENCODE Processing Pipeline 000e8a015b74ac886cae303ba128e247 https://www.encodeproject.org/files/ENCFF205UNE/@@download/ENCFF205UNE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF647QKO bed narrowPeak conservative idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF498DFC, ENCFF547MET, ENCFF596FSM, ENCFF704GUT 516833 ENCODE Processing Pipeline c2badd4d0f5ca99bbe083652f2715364 https://www.encodeproject.org/files/ENCFF647QKO/@@download/ENCFF647QKO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF301RZK bigBed narrowPeak conservative idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF647QKO 957681 ENCODE Processing Pipeline 2abbbf1cccfc07e45166595e4e71e194 https://www.encodeproject.org/files/ENCFF301RZK/@@download/ENCFF301RZK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF062DPL bed narrowPeak optimal idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF498DFC, ENCFF547MET, ENCFF596FSM, ENCFF704GUT 573775 ENCODE Processing Pipeline 140af3c0c17233516d059ea23a421922 https://www.encodeproject.org/files/ENCFF062DPL/@@download/ENCFF062DPL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF479SFJ bigBed narrowPeak optimal idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF062DPL 1043622 ENCODE Processing Pipeline 19f37e6944b2ca78d69250e28719478c https://www.encodeproject.org/files/ENCFF479SFJ/@@download/ENCFF479SFJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF001NGP bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NGR 401862814 Michael Snyder, Stanford 0d3eb7e86f44f099bc017dd29105c7df https://www.encodeproject.org/files/ENCFF001NGP/@@download/ENCFF001NGP.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NGQ bigBed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YHY 1945962 Michael Snyder, Stanford bd6c65ba8674a6a41e8752b892879299 https://www.encodeproject.org/files/ENCFF001NGQ/@@download/ENCFF001NGQ.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NGR fastq reads ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 913008208 Michael Snyder, Stanford e0234974ff4469a0b05b8439a9921721 https://www.encodeproject.org/files/ENCFF001NGR/@@download/ENCFF001NGR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NGT fastq reads ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1042836880 Michael Snyder, Stanford 008aa46cbfb7b9b3ab6219f224cbd100 https://www.encodeproject.org/files/ENCFF001NGT/@@download/ENCFF001NGT.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NGV bigWig signal ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NGP, ENCFF001NGW 333773992 Michael Snyder, Stanford 5da91dfc539da8bf16ec51968c860200 https://www.encodeproject.org/files/ENCFF001NGV/@@download/ENCFF001NGV.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NGW bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NGT 510604637 Michael Snyder, Stanford e4076da58385fd97120878e210e00279 https://www.encodeproject.org/files/ENCFF001NGW/@@download/ENCFF001NGW.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001YHY bed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NGP, ENCFF001NGW 845208 Michael Snyder, Stanford 18cd0bc77df48bc6a7dd46e7e7a096e8 https://www.encodeproject.org/files/ENCFF001YHY/@@download/ENCFF001YHY.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF967BDV bam unfiltered alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NGT, ENCFF018NEO 1110977690 ENCODE Processing Pipeline 802e31cd162c066cb78997e7bdd84de7 https://www.encodeproject.org/files/ENCFF967BDV/@@download/ENCFF967BDV.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF708HJG bam unfiltered alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NGR, ENCFF018NEO 948262139 ENCODE Processing Pipeline 70ac14a0a08df80b31c5ac6bcd2a262d https://www.encodeproject.org/files/ENCFF708HJG/@@download/ENCFF708HJG.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF315SAY bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NGT, ENCFF018NEO 747126420 ENCODE Processing Pipeline 57048197294ac52109e37a49524dd167 https://www.encodeproject.org/files/ENCFF315SAY/@@download/ENCFF315SAY.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF554HHU bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NGR, ENCFF018NEO 547383652 ENCODE Processing Pipeline 12ee59cf0a635c06b1eb7b7f02b7a4aa https://www.encodeproject.org/files/ENCFF554HHU/@@download/ENCFF554HHU.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF451TOD bigWig signal p-value ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF554HHU 239663948 ENCODE Processing Pipeline 006ba56896fbe5cf2fba4aa7fe61e5e2 https://www.encodeproject.org/files/ENCFF451TOD/@@download/ENCFF451TOD.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF757SSH bigWig signal p-value ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF315SAY, ENCFF339ZWC 238832501 ENCODE Processing Pipeline db58d0b7387f382ab9daaaff8907aaf6 https://www.encodeproject.org/files/ENCFF757SSH/@@download/ENCFF757SSH.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF203IHO bigWig fold change over control ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF554HHU 233380289 ENCODE Processing Pipeline 1cb4d61263e0701cd470718da79881dc https://www.encodeproject.org/files/ENCFF203IHO/@@download/ENCFF203IHO.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF618TKD bigWig signal p-value ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF315SAY, ENCFF339ZWC, ENCFF554HHU 217853636 ENCODE Processing Pipeline 530647558bd299ac60d356a5e17a1355 https://www.encodeproject.org/files/ENCFF618TKD/@@download/ENCFF618TKD.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF383WRW bigWig fold change over control ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF315SAY, ENCFF339ZWC 296112961 ENCODE Processing Pipeline b212cfc9c431da55272d2275e381e126 https://www.encodeproject.org/files/ENCFF383WRW/@@download/ENCFF383WRW.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF285JAZ bigBed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF821HYG 7835677 ENCODE Processing Pipeline 83f995f63d593bcb14af26bb12e84952 https://www.encodeproject.org/files/ENCFF285JAZ/@@download/ENCFF285JAZ.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF759NPU bigBed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF268GPJ 12978698 ENCODE Processing Pipeline ac4d6f5152780a5e8414d251e8e03b16 https://www.encodeproject.org/files/ENCFF759NPU/@@download/ENCFF759NPU.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF165JVA bigWig fold change over control ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF315SAY, ENCFF339ZWC, ENCFF554HHU 464724804 ENCODE Processing Pipeline c75b04eaed8f99b189aa6c94014ee5f0 https://www.encodeproject.org/files/ENCFF165JVA/@@download/ENCFF165JVA.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF821HYG bed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF315SAY, ENCFF339ZWC 3512449 ENCODE Processing Pipeline 699c4a9c2ced2e98d88ed671c81eabe3 https://www.encodeproject.org/files/ENCFF821HYG/@@download/ENCFF821HYG.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF140KQK bigBed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF916JGK 10325390 ENCODE Processing Pipeline a4c1d249f364bc15b97cc2164bfcaba3 https://www.encodeproject.org/files/ENCFF140KQK/@@download/ENCFF140KQK.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF916JGK bed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF554HHU 4872603 ENCODE Processing Pipeline 57b48f8ab3b55912f297353442925534 https://www.encodeproject.org/files/ENCFF916JGK/@@download/ENCFF916JGK.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF268GPJ bed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF315SAY, ENCFF339ZWC, ENCFF554HHU 5784872 ENCODE Processing Pipeline c034b451b5eafa69a535f8da84c7f8a2 https://www.encodeproject.org/files/ENCFF268GPJ/@@download/ENCFF268GPJ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF151RYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF530THK 1036118 ENCODE Processing Pipeline 26f1f12fc6d52cbea62605955e2de894 https://www.encodeproject.org/files/ENCFF151RYZ/@@download/ENCFF151RYZ.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF530THK bed narrowPeak optimal idr thresholded peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF268GPJ, ENCFF547MET, ENCFF821HYG, ENCFF916JGK 558681 ENCODE Processing Pipeline 1428adaf1485bbb84bc3895dd2853055 https://www.encodeproject.org/files/ENCFF530THK/@@download/ENCFF530THK.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001MVP bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MVS 851685925 Ross Hardison, PennState f16d4c620c344bbc6daa9c62eb94ce1c https://www.encodeproject.org/files/ENCFF001MVP/@@download/ENCFF001MVP.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001MVQ bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MVY 1820359042 Ross Hardison, PennState 765b7128388284be505fbb216e91d50e https://www.encodeproject.org/files/ENCFF001MVQ/@@download/ENCFF001MVQ.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001MVR bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGS 1026425 Ross Hardison, PennState b22251f4516c90356a3b53617f1a6599 https://www.encodeproject.org/files/ENCFF001MVR/@@download/ENCFF001MVR.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001MVS fastq reads ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 720724742 Ross Hardison, PennState c0c827d51cbd8179ee9e54c090f1f20f https://www.encodeproject.org/files/ENCFF001MVS/@@download/ENCFF001MVS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001MVT bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGT 763536 Ross Hardison, PennState 5a71a15d19966cf767125a78d89ea3c6 https://www.encodeproject.org/files/ENCFF001MVT/@@download/ENCFF001MVT.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001MVU bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGU 1082256 Ross Hardison, PennState 921f4bf29c308415d1530954c84662d5 https://www.encodeproject.org/files/ENCFF001MVU/@@download/ENCFF001MVU.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001MVV bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1804483076 Ross Hardison, PennState 779498b46e896bdfa8229a79f65cc9b4 https://www.encodeproject.org/files/ENCFF001MVV/@@download/ENCFF001MVV.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MVW bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3434317701 Ross Hardison, PennState f9aa2cd0a025aa72e41f156d40e6a6f2 https://www.encodeproject.org/files/ENCFF001MVW/@@download/ENCFF001MVW.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MVX bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 4832985898 Ross Hardison, PennState beb22db3bac3720b79433ff98bdffd25 https://www.encodeproject.org/files/ENCFF001MVX/@@download/ENCFF001MVX.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MVY fastq reads ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1454271908 Ross Hardison, PennState 12a2d5932444ee5c3196b5038db710d8 https://www.encodeproject.org/files/ENCFF001MVY/@@download/ENCFF001MVY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWM/ released low read length, low read depth, mixed read lengths, inconsistent control read length, inconsistent platforms ENCFF001YGS bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 556051 Ross Hardison, PennState 7dbe7b05386947016b3e5458f0328c26 https://www.encodeproject.org/files/ENCFF001YGS/@@download/ENCFF001YGS.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YGT bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 447880 Ross Hardison, PennState dc8173ec0ccb439bfd0e41fcdf2e434b https://www.encodeproject.org/files/ENCFF001YGT/@@download/ENCFF001YGT.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YGU bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 547684 Ross Hardison, PennState 9467e6481229a123230e235fcec693f4 https://www.encodeproject.org/files/ENCFF001YGU/@@download/ENCFF001YGU.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from ENCFF214HNU bam unfiltered alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1722384348 ENCODE Processing Pipeline 2356f07d39e894da675913bf49ebed68 https://www.encodeproject.org/files/ENCFF214HNU/@@download/ENCFF214HNU.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF199HTM bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1145017532 ENCODE Processing Pipeline 77427bb70e36a17d41bde2be9c7e7680 https://www.encodeproject.org/files/ENCFF199HTM/@@download/ENCFF199HTM.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF685FCF bam unfiltered alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 913452305 ENCODE Processing Pipeline 6d53441e68051ae86f38183523ae2e8f https://www.encodeproject.org/files/ENCFF685FCF/@@download/ENCFF685FCF.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF720JCR bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 643432288 ENCODE Processing Pipeline 99532c61cb2d0e26b1766a1363e7ab24 https://www.encodeproject.org/files/ENCFF720JCR/@@download/ENCFF720JCR.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF005EUZ bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 766386483 ENCODE Processing Pipeline d061ab21ca88847a6b7b78aa04ac1e07 https://www.encodeproject.org/files/ENCFF005EUZ/@@download/ENCFF005EUZ.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF058IYU bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 917647140 ENCODE Processing Pipeline 6b3ce5779391dcf7fae8d1ac4de799e7 https://www.encodeproject.org/files/ENCFF058IYU/@@download/ENCFF058IYU.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF799JEB bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 918083493 ENCODE Processing Pipeline f9a634bfdf6e69aec9e9f6d8faf13069 https://www.encodeproject.org/files/ENCFF799JEB/@@download/ENCFF799JEB.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF344IDA bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 648928905 ENCODE Processing Pipeline 340746a075203f04f8c9ecc081534773 https://www.encodeproject.org/files/ENCFF344IDA/@@download/ENCFF344IDA.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF117JXG bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 772295424 ENCODE Processing Pipeline 6ec2d915eeec37af15d4b31d85a9f74d https://www.encodeproject.org/files/ENCFF117JXG/@@download/ENCFF117JXG.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF498RZJ bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 1071382330 ENCODE Processing Pipeline 43c426fb967bffbc7ccde2739563d634 https://www.encodeproject.org/files/ENCFF498RZJ/@@download/ENCFF498RZJ.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF688HQL bed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 5954185 ENCODE Processing Pipeline 1804aa406503607a7bc61f99cba9fceb https://www.encodeproject.org/files/ENCFF688HQL/@@download/ENCFF688HQL.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF334OBK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF752ZTC 954767 ENCODE Processing Pipeline c501570fa43b5351e23051bdb7860e1f https://www.encodeproject.org/files/ENCFF334OBK/@@download/ENCFF334OBK.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF103KWB bed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 5884067 ENCODE Processing Pipeline a9a835017a1fb8a6dd3c87f7cd1846a6 https://www.encodeproject.org/files/ENCFF103KWB/@@download/ENCFF103KWB.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF752ZTC bed narrowPeak optimal idr thresholded peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF103KWB, ENCFF439LAM, ENCFF547MET, ENCFF688HQL 548057 ENCODE Processing Pipeline 8cb3df5c51199a58d6fdaa05100139f4 https://www.encodeproject.org/files/ENCFF752ZTC/@@download/ENCFF752ZTC.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF439LAM bed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 6538942 ENCODE Processing Pipeline b9e065f27d84bc5ed6e17c352ad87c16 https://www.encodeproject.org/files/ENCFF439LAM/@@download/ENCFF439LAM.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF800YGV bigBed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF103KWB 11412287 ENCODE Processing Pipeline 9db56c64cad37a8aa851fd218fe898f4 https://www.encodeproject.org/files/ENCFF800YGV/@@download/ENCFF800YGV.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF165XYH bigBed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF688HQL 13441555 ENCODE Processing Pipeline a6451905abfd63f80e181e99a6b40520 https://www.encodeproject.org/files/ENCFF165XYH/@@download/ENCFF165XYH.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF956CEA bigBed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF439LAM 11498240 ENCODE Processing Pipeline b59b4cae2051180800113726cd16e0ed https://www.encodeproject.org/files/ENCFF956CEA/@@download/ENCFF956CEA.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms ENCFF001IGA bigBed narrowPeak peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVC 639692 Barbara Wold, Caltech fe4b19e314e77880e5cc953d2f50ad39 https://www.encodeproject.org/files/ENCFF001IGA/@@download/ENCFF001IGA.bigBed mm9 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGB fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 271153228 Barbara Wold, Caltech bf031200417f64458ab0600f2182e41e https://www.encodeproject.org/files/ENCFF001IGB/@@download/ENCFF001IGB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGC fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 206524109 Barbara Wold, Caltech 8705ce15b2072a5c057d105c34720458 https://www.encodeproject.org/files/ENCFF001IGC/@@download/ENCFF001IGC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGD fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 358558672 Barbara Wold, Caltech 83b2b7a183a883dcb89dafa03233b287 https://www.encodeproject.org/files/ENCFF001IGD/@@download/ENCFF001IGD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGE fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 373146875 Barbara Wold, Caltech ad49c5a1c71670c001b78cb469fad61c https://www.encodeproject.org/files/ENCFF001IGE/@@download/ENCFF001IGE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGG fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 286038108 Barbara Wold, Caltech 3b8dd0d8a1b4b065d24e762fa811fadd https://www.encodeproject.org/files/ENCFF001IGG/@@download/ENCFF001IGG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGH fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 274651076 Barbara Wold, Caltech 18d59f242692672abf157f74249cb7ff https://www.encodeproject.org/files/ENCFF001IGH/@@download/ENCFF001IGH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF001IGI bigWig signal ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 70571982 Barbara Wold, Caltech 84952444a3193cc40dfb19c74045ad10 https://www.encodeproject.org/files/ENCFF001IGI/@@download/ENCFF001IGI.bigWig mm9 released mild to moderate bottlenecking missing derived_from insufficient read depth, insufficient read length ENCFF001XVC bed narrowPeak peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 398409 Barbara Wold, Caltech 331c9d780c025dac3d502638f8ac4fcf https://www.encodeproject.org/files/ENCFF001XVC/@@download/ENCFF001XVC.bed.gz mm9 released mild to moderate bottlenecking missing derived_from insufficient read depth, insufficient read length ENCFF844RQT bam unfiltered alignments ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGB, ENCFF001IGC, ENCFF001IGD, ENCFF001IGE, ENCFF001IGG, ENCFF001IGH, ENCFF018NEO 1857300570 ENCODE Processing Pipeline f674cfc0e969522be45d584f2fb63477 https://www.encodeproject.org/files/ENCFF844RQT/@@download/ENCFF844RQT.bam mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF710XZJ bam alignments ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGB, ENCFF001IGC, ENCFF001IGD, ENCFF001IGE, ENCFF001IGG, ENCFF001IGH, ENCFF018NEO 316755738 ENCODE Processing Pipeline 3249c99cad3154cc425ca111812b8d2a https://www.encodeproject.org/files/ENCFF710XZJ/@@download/ENCFF710XZJ.bam mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF826GQH bigBed narrowPeak peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF985BCG 9518193 ENCODE Processing Pipeline 4f0b1edd87d92552c3d06a5affcc9f26 https://www.encodeproject.org/files/ENCFF826GQH/@@download/ENCFF826GQH.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF891VZV bigWig fold change over control ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF710XZJ 120634471 ENCODE Processing Pipeline 17427f65c10ad602a7d5b5aa6903f18e https://www.encodeproject.org/files/ENCFF891VZV/@@download/ENCFF891VZV.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF985BCG bed narrowPeak peaks and background as input for IDR ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF710XZJ 4185119 ENCODE Processing Pipeline eff544824eaf7628c8779389cea52b8a https://www.encodeproject.org/files/ENCFF985BCG/@@download/ENCFF985BCG.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF223EFT bigWig signal p-value ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF710XZJ 169922805 ENCODE Processing Pipeline 47679ace53fe96a6541f0c8c0c3136de https://www.encodeproject.org/files/ENCFF223EFT/@@download/ENCFF223EFT.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF341XFN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF985BCG 206146 ENCODE Processing Pipeline 2c4aef759f20cf28ae69e13f8afdca42 https://www.encodeproject.org/files/ENCFF341XFN/@@download/ENCFF341XFN.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF939QGK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF341XFN 417633 ENCODE Processing Pipeline 12b06911062c52fb0ef368275b2a44cb https://www.encodeproject.org/files/ENCFF939QGK/@@download/ENCFF939QGK.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length ENCFF002ADY fastq reads ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 45 single-ended 1634939989 Ross Hardison, PennState ada7126f8ff5fb2d97567d08190910f4 https://www.encodeproject.org/files/ENCFF002ADY/@@download/ENCFF002ADY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF002ADZ bigWig signal ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 4540291938 Ross Hardison, PennState 86621b00c4c08ce76d98fbc1ddf2da11 https://www.encodeproject.org/files/ENCFF002ADZ/@@download/ENCFF002ADZ.bigWig mm9 released low read length, mixed read lengths, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEA fastq reads ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 48 single-ended 1584558798 Ross Hardison, PennState 2a5a3f06b9b3d131b9ac7d0324d1247e https://www.encodeproject.org/files/ENCFF002AEA/@@download/ENCFF002AEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, mixed read lengths, inconsistent control read length, borderline replicate concordance experiment not submitted to GEO ENCFF002AEB bigWig signal ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 4275153880 Ross Hardison, PennState f5483ec52b598bd4585e4d8ff88b6e19 https://www.encodeproject.org/files/ENCFF002AEB/@@download/ENCFF002AEB.bigWig mm9 released low read length, mixed read lengths, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEC bigWig signal ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 5689185762 Ross Hardison, PennState e415d4dea0516b1d19eb5a6d3c651c6c https://www.encodeproject.org/files/ENCFF002AEC/@@download/ENCFF002AEC.bigWig mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002AED bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF002ADY 2004476729 Ross Hardison, PennState 84609e70acb23bb9c4186e372ba1a898 https://www.encodeproject.org/files/ENCFF002AED/@@download/ENCFF002AED.bam mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF002AEE bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF002AEA 1927510956 Ross Hardison, PennState 81bed3ae0b0cae13ab98df051899488d https://www.encodeproject.org/files/ENCFF002AEE/@@download/ENCFF002AEE.bam mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF002AEF bigBed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 606159 Ross Hardison, PennState 5607eaf27481ee76cc43af17b1e52c2f https://www.encodeproject.org/files/ENCFF002AEF/@@download/ENCFF002AEF.bigBed mm9 released low read length, mixed read lengths, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEG bigBed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 216042 Ross Hardison, PennState aa9d180f750287adbf66f89bb352924f https://www.encodeproject.org/files/ENCFF002AEG/@@download/ENCFF002AEG.bigBed mm9 released low read length, mixed read lengths, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEH bigBed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 410298 Ross Hardison, PennState f51027f731ff4682ab6a818c55575cc9 https://www.encodeproject.org/files/ENCFF002AEH/@@download/ENCFF002AEH.bigBed mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002AEI bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 4095682456 Ross Hardison, PennState 1587d494bd000986898e8f8ab67bc79c https://www.encodeproject.org/files/ENCFF002AEI/@@download/ENCFF002AEI.bam mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF434DJA bed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE ENCFF002AEH 220982 ENCODE Consortium d9f821f6c07ff722e2a020d19790b4c8 https://www.encodeproject.org/files/ENCFF434DJA/@@download/ENCFF434DJA.bed.gz mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF343BAC bed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 ENCFF002AEG 106790 ENCODE Consortium 0a148d90bfb9591bdf71bf0ba2341154 https://www.encodeproject.org/files/ENCFF343BAC/@@download/ENCFF343BAC.bed.gz mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF438EEG bed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 ENCFF002AEF 379150 ENCODE Consortium 572576318fb10ed9ce3303463d1d2d1a https://www.encodeproject.org/files/ENCFF438EEG/@@download/ENCFF438EEG.bed.gz mm9 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF775BML bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 45 ENCFF002ADY, ENCFF018NEO 1389677911 ENCODE Processing Pipeline a88228ed0c69362cfab83b6eecf28629 https://www.encodeproject.org/files/ENCFF775BML/@@download/ENCFF775BML.bam mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF910TVB bam unfiltered alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 45 ENCFF002ADY, ENCFF018NEO 2127281150 ENCODE Processing Pipeline 9e918a4efee12f1c99fbdc7b378fcfb8 https://www.encodeproject.org/files/ENCFF910TVB/@@download/ENCFF910TVB.bam mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF340YLN bam unfiltered alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 45 ENCFF002AEA, ENCFF018NEO 1972286958 ENCODE Processing Pipeline e3f4e5abdb3cffff17c5edeab81c68ea https://www.encodeproject.org/files/ENCFF340YLN/@@download/ENCFF340YLN.bam mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF536YVP bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 45 ENCFF002AEA, ENCFF018NEO 1353141107 ENCODE Processing Pipeline 399fadeeaeff1b791db6ab1f20f8d39a https://www.encodeproject.org/files/ENCFF536YVP/@@download/ENCFF536YVP.bam mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF224PRU bigWig signal p-value ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF666VRA, ENCFF775BML 561316944 ENCODE Processing Pipeline 0496cedbb778268f985ad7622c58adce https://www.encodeproject.org/files/ENCFF224PRU/@@download/ENCFF224PRU.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF872JDK bigWig signal p-value ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF111OFQ, ENCFF536YVP 537118798 ENCODE Processing Pipeline e20cbd714b3a6ed231f85fe309a724c7 https://www.encodeproject.org/files/ENCFF872JDK/@@download/ENCFF872JDK.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF752WKJ bed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF666VRA, ENCFF775BML 5873702 ENCODE Processing Pipeline 810c019ff38ccfe6efcccd87e9857005 https://www.encodeproject.org/files/ENCFF752WKJ/@@download/ENCFF752WKJ.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF717OFI bed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF536YVP, ENCFF666VRA, ENCFF775BML 6890085 ENCODE Processing Pipeline b8f908f56664ff7bc2afd635a0e6ae11 https://www.encodeproject.org/files/ENCFF717OFI/@@download/ENCFF717OFI.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF180VCU bigWig fold change over control ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF111OFQ, ENCFF536YVP 548658945 ENCODE Processing Pipeline d849e212e49f40be1446b795f1e4f673 https://www.encodeproject.org/files/ENCFF180VCU/@@download/ENCFF180VCU.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF478BIW bed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF111OFQ, ENCFF536YVP 5183742 ENCODE Processing Pipeline 32b0c140e98caf24148fc92e51572a51 https://www.encodeproject.org/files/ENCFF478BIW/@@download/ENCFF478BIW.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF468NLM bigWig signal p-value ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF536YVP, ENCFF666VRA, ENCFF775BML 982260856 ENCODE Processing Pipeline 8a92148fe506c8ed715875dee6910f11 https://www.encodeproject.org/files/ENCFF468NLM/@@download/ENCFF468NLM.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF232UNC bigWig fold change over control ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF536YVP, ENCFF666VRA, ENCFF775BML 1097780315 ENCODE Processing Pipeline 5274d30be8f42897a24315db4608d562 https://www.encodeproject.org/files/ENCFF232UNC/@@download/ENCFF232UNC.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF413RYD bigBed narrowPeak conservative idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF557KRT 411027 ENCODE Processing Pipeline ae63d0150b6a9ac66f7e9ff8c2672f39 https://www.encodeproject.org/files/ENCFF413RYD/@@download/ENCFF413RYD.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF901LCA bigBed narrowPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF478BIW 11242691 ENCODE Processing Pipeline 96628ab7a4e01531205e9b97477165cb https://www.encodeproject.org/files/ENCFF901LCA/@@download/ENCFF901LCA.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF146LOS bigWig fold change over control ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF666VRA, ENCFF775BML 537214709 ENCODE Processing Pipeline 27d47f89d9c6e3506025cf0b11f481e3 https://www.encodeproject.org/files/ENCFF146LOS/@@download/ENCFF146LOS.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF422CZR bigBed narrowPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF752WKJ 13555451 ENCODE Processing Pipeline 490934f97b2e28298523663c4215dbcc https://www.encodeproject.org/files/ENCFF422CZR/@@download/ENCFF422CZR.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF426RXG bigBed narrowPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF717OFI 13579558 ENCODE Processing Pipeline c83c343ebe1c876c4ae51ab2eb36c71d https://www.encodeproject.org/files/ENCFF426RXG/@@download/ENCFF426RXG.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF557KRT bed narrowPeak conservative idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF478BIW, ENCFF547MET, ENCFF717OFI, ENCFF752WKJ 175529 ENCODE Processing Pipeline 4c4394e904521422e7feba0c6f4cdc28 https://www.encodeproject.org/files/ENCFF557KRT/@@download/ENCFF557KRT.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF495GBW bed narrowPeak optimal idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF478BIW, ENCFF547MET, ENCFF717OFI, ENCFF752WKJ 287900 ENCODE Processing Pipeline 0ae8fa52a3e0d20810077c120a7ebd25 https://www.encodeproject.org/files/ENCFF495GBW/@@download/ENCFF495GBW.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF904RHK bigBed narrowPeak optimal idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF495GBW 579306 ENCODE Processing Pipeline 49c74c254f93481e6d41ccddd4d615c7 https://www.encodeproject.org/files/ENCFF904RHK/@@download/ENCFF904RHK.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance experiment not submitted to GEO ENCFF001IHW bigBed narrowPeak peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVK 127337 Barbara Wold, Caltech fa2504f2a26500d7b116d96a63982f17 https://www.encodeproject.org/files/ENCFF001IHW/@@download/ENCFF001IHW.bigBed mm9 released low read depth insufficient read length ENCFF001IHX fastq reads ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 301899546 Barbara Wold, Caltech 77b4e8e8d737636a695b0150692c9f1e https://www.encodeproject.org/files/ENCFF001IHX/@@download/ENCFF001IHX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length ENCFF001IHY fastq reads ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 335648847 Barbara Wold, Caltech af741bed9a9f26f0c5b6cafb8a62f974 https://www.encodeproject.org/files/ENCFF001IHY/@@download/ENCFF001IHY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length ENCFF001IHZ fastq reads ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 302622439 Barbara Wold, Caltech dca9e35fea8df011c88b9dc7dfd5f085 https://www.encodeproject.org/files/ENCFF001IHZ/@@download/ENCFF001IHZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length ENCFF001IIA bigWig signal ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIB 142869044 Barbara Wold, Caltech ed2a3b803cbb98bc5a185eecbea82224 https://www.encodeproject.org/files/ENCFF001IIA/@@download/ENCFF001IIA.bigWig mm9 released low read depth insufficient read length ENCFF001IIB bam alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ 1081136603 Barbara Wold, Caltech 92ac3d482d04476aae68f7bf707e6283 https://www.encodeproject.org/files/ENCFF001IIB/@@download/ENCFF001IIB.bam mm9 released low read depth insufficient read length ENCFF001XVK bed narrowPeak peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIB 45791 Barbara Wold, Caltech 350d735bb7972e7d85cc81183a9b8d24 https://www.encodeproject.org/files/ENCFF001XVK/@@download/ENCFF001XVK.bed.gz mm9 released low read depth insufficient read length ENCFF393JVM bam unfiltered alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ, ENCFF018NEO 1168864332 ENCODE Processing Pipeline f680aabe359335f895299c214fcfe282 https://www.encodeproject.org/files/ENCFF393JVM/@@download/ENCFF393JVM.bam mm10 released low read depth insufficient read length ENCFF380GQR bam alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ, ENCFF018NEO 677419232 ENCODE Processing Pipeline 8661c79f35ab6219ef0a1ed6e0548886 https://www.encodeproject.org/files/ENCFF380GQR/@@download/ENCFF380GQR.bam mm10 released low read depth insufficient read length ENCFF768MYC bigWig signal p-value ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF380GQR 176070284 ENCODE Processing Pipeline 009734a4ea3c692f29098c165bde1320 https://www.encodeproject.org/files/ENCFF768MYC/@@download/ENCFF768MYC.bigWig mm10 released low read depth insufficient read length ENCFF552PFK bigWig fold change over control ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF380GQR 255830542 ENCODE Processing Pipeline b658ab728425bdf1f7f3a545ef6e703a https://www.encodeproject.org/files/ENCFF552PFK/@@download/ENCFF552PFK.bigWig mm10 released low read depth insufficient read length ENCFF643QSK bed narrowPeak peaks and background as input for IDR ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF380GQR 4597342 ENCODE Processing Pipeline 9d182a7b42c8d476cc12129b75a5fe33 https://www.encodeproject.org/files/ENCFF643QSK/@@download/ENCFF643QSK.bed.gz mm10 released low read depth insufficient read length ENCFF562RCZ bigBed narrowPeak peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF643QSK 10395851 ENCODE Processing Pipeline 856ca0f86024503b200cb4bd9ce5bf5e https://www.encodeproject.org/files/ENCFF562RCZ/@@download/ENCFF562RCZ.bigBed mm10 released low read depth insufficient read length ENCFF926GLB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF643QSK 123409 ENCODE Processing Pipeline fb64a8763713a6c213252f40e1e5ac50 https://www.encodeproject.org/files/ENCFF926GLB/@@download/ENCFF926GLB.bed.gz mm10 released low read depth insufficient read length ENCFF672IWK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF926GLB 283629 ENCODE Processing Pipeline 81a1f4d113e06d485f6181dd86375e77 https://www.encodeproject.org/files/ENCFF672IWK/@@download/ENCFF672IWK.bigBed mm10 released low read depth insufficient read length ENCFF001MTG bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MTO 1054957261 Ross Hardison, PennState 7ef13178b86436e9b83b7176b4eef420 https://www.encodeproject.org/files/ENCFF001MTG/@@download/ENCFF001MTG.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTH bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MTM 488848288 Ross Hardison, PennState cd15944bc03e23408a58cbdecae01d94 https://www.encodeproject.org/files/ENCFF001MTH/@@download/ENCFF001MTH.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTI bigBed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGC 208870 Ross Hardison, PennState 66c90bf8a7b733183a733b1cd38ebfe7 https://www.encodeproject.org/files/ENCFF001MTI/@@download/ENCFF001MTI.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTJ bigBed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGD 247876 Ross Hardison, PennState 2028f1690e3ad45fa0ffc09b5f6ed87c https://www.encodeproject.org/files/ENCFF001MTJ/@@download/ENCFF001MTJ.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTK bigBed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGE 108730 Ross Hardison, PennState bd7278ffc8c4e292a34556c3466551fe https://www.encodeproject.org/files/ENCFF001MTK/@@download/ENCFF001MTK.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTL bigWig signal ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1603101155 Ross Hardison, PennState 86bc5a27ec88aa218c249320a05aa627 https://www.encodeproject.org/files/ENCFF001MTL/@@download/ENCFF001MTL.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MTM fastq reads ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 402857263 Ross Hardison, PennState e0f1b28b34d6313a59b7f7f06328ce29 https://www.encodeproject.org/files/ENCFF001MTM/@@download/ENCFF001MTM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTN bigWig signal ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2642991299 Ross Hardison, PennState 9551bbc4ee40001b9425b94f38c89795 https://www.encodeproject.org/files/ENCFF001MTN/@@download/ENCFF001MTN.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MTO fastq reads ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 949249241 Ross Hardison, PennState b7292d33c5b4f3eca34ac2b678494bc8 https://www.encodeproject.org/files/ENCFF001MTO/@@download/ENCFF001MTO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTP bigWig signal ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3171942198 Ross Hardison, PennState 2135c242402d6f84da74b392b2fb4fbc https://www.encodeproject.org/files/ENCFF001MTP/@@download/ENCFF001MTP.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YGC bed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 81006 Ross Hardison, PennState 5fa9ccb670e593bda00fd2493ce80506 https://www.encodeproject.org/files/ENCFF001YGC/@@download/ENCFF001YGC.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YGD bed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 101109 Ross Hardison, PennState 1c6d51cd1d159de92b158de179e6f6f0 https://www.encodeproject.org/files/ENCFF001YGD/@@download/ENCFF001YGD.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YGE bed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 38421 Ross Hardison, PennState 3f91ac3994370db7b8ccc4924f4fedfd https://www.encodeproject.org/files/ENCFF001YGE/@@download/ENCFF001YGE.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF537JNZ bam unfiltered alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MTM, ENCFF018NEO 525696592 ENCODE Processing Pipeline 9a0a788cdc0bbe51415cb0a2ca2fdc8b https://www.encodeproject.org/files/ENCFF537JNZ/@@download/ENCFF537JNZ.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF044IQW bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MTM, ENCFF018NEO 364920972 ENCODE Processing Pipeline 771b1c575a449a767f4b021d19dada63 https://www.encodeproject.org/files/ENCFF044IQW/@@download/ENCFF044IQW.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF459UCO bam unfiltered alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MTO, ENCFF018NEO 1079475376 ENCODE Processing Pipeline 6faa9b7cd24b4e835ef1865210c964f3 https://www.encodeproject.org/files/ENCFF459UCO/@@download/ENCFF459UCO.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF407CBS bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MTO, ENCFF018NEO 335533230 ENCODE Processing Pipeline 898f04abbdc6dd072550bcde7c3fc965 https://www.encodeproject.org/files/ENCFF407CBS/@@download/ENCFF407CBS.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF744TCR bigWig signal p-value ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF044IQW, ENCFF383IWZ, ENCFF676LVI 762018798 ENCODE Processing Pipeline 455a8bb40879081e64af2bc7d7813d0e https://www.encodeproject.org/files/ENCFF744TCR/@@download/ENCFF744TCR.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF974KFZ bed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF044IQW, ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 5620793 ENCODE Processing Pipeline fdf5f47bc6253e5ce420eb20c78466b3 https://www.encodeproject.org/files/ENCFF974KFZ/@@download/ENCFF974KFZ.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF023REQ bed narrowPeak conservative idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF266CYV, ENCFF547MET, ENCFF827ERW, ENCFF974KFZ 43131 ENCODE Processing Pipeline 0f8aeb6f6c5b42a77eb15e9f58863dd4 https://www.encodeproject.org/files/ENCFF023REQ/@@download/ENCFF023REQ.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF052HEI bigWig signal p-value ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 777759569 ENCODE Processing Pipeline 12649ff50176ccff6aca9787e616d951 https://www.encodeproject.org/files/ENCFF052HEI/@@download/ENCFF052HEI.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF265RAH bigWig signal p-value ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF044IQW, ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 844051477 ENCODE Processing Pipeline 99e2a97685fd7a4afaa7ce6ce24067ed https://www.encodeproject.org/files/ENCFF265RAH/@@download/ENCFF265RAH.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF827ERW bed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 2418725 ENCODE Processing Pipeline dc7c6180032b290165ebda3099c8d26f https://www.encodeproject.org/files/ENCFF827ERW/@@download/ENCFF827ERW.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF653ZIY bigWig fold change over control ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF044IQW, ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 648983910 ENCODE Processing Pipeline 063d17f4be6bf9d5e55a91676625fadf https://www.encodeproject.org/files/ENCFF653ZIY/@@download/ENCFF653ZIY.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF266CYV bed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF044IQW, ENCFF383IWZ, ENCFF676LVI 4228829 ENCODE Processing Pipeline 4fcdb2a18a3e36bebf5d00b3fc7a392e https://www.encodeproject.org/files/ENCFF266CYV/@@download/ENCFF266CYV.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF283JHG bigWig fold change over control ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 313064856 ENCODE Processing Pipeline 2162fbb77da57bf7e9abb432761d9d42 https://www.encodeproject.org/files/ENCFF283JHG/@@download/ENCFF283JHG.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF294WYU bigWig fold change over control ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF044IQW, ENCFF383IWZ, ENCFF676LVI 429826058 ENCODE Processing Pipeline eb9f55db4d512f7d928619705081545d https://www.encodeproject.org/files/ENCFF294WYU/@@download/ENCFF294WYU.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF961GJK bigBed narrowPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF266CYV 8670799 ENCODE Processing Pipeline 028db74e6f3dd69a757d7ec9509a860b https://www.encodeproject.org/files/ENCFF961GJK/@@download/ENCFF961GJK.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF004THG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF023REQ 127056 ENCODE Processing Pipeline 0fbbca6e911bd18ec6fbb1794dee0253 https://www.encodeproject.org/files/ENCFF004THG/@@download/ENCFF004THG.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF712DEF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF972VNL 143644 ENCODE Processing Pipeline 3c99a1bc629a5b491352ecce58c57b50 https://www.encodeproject.org/files/ENCFF712DEF/@@download/ENCFF712DEF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF618DXK bigBed narrowPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF827ERW 5635384 ENCODE Processing Pipeline 9c46eff0855fd21244fbf0fbf03676b2 https://www.encodeproject.org/files/ENCFF618DXK/@@download/ENCFF618DXK.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF287AXE bigBed narrowPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF974KFZ 11301001 ENCODE Processing Pipeline 0581240037d1a4d8b85e4ced64f62537 https://www.encodeproject.org/files/ENCFF287AXE/@@download/ENCFF287AXE.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF972VNL bed narrowPeak optimal idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF266CYV, ENCFF547MET, ENCFF827ERW, ENCFF974KFZ 55241 ENCODE Processing Pipeline d0e560eda821c03589cef1594aed7215 https://www.encodeproject.org/files/ENCFF972VNL/@@download/ENCFF972VNL.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MOF bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MOI 783524607 Ross Hardison, PennState 7d0c91e460584cf4aab282839cbde458 https://www.encodeproject.org/files/ENCFF001MOF/@@download/ENCFF001MOF.bam mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOG bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MOP 699044289 Ross Hardison, PennState 31e6c4a4c7fc57ecb66db13a5a3d0363 https://www.encodeproject.org/files/ENCFF001MOG/@@download/ENCFF001MOG.bam mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOH bigBed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFA 179661 Ross Hardison, PennState c5e6d1f5cd3660215898a69ef832048e https://www.encodeproject.org/files/ENCFF001MOH/@@download/ENCFF001MOH.bigBed mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOI fastq reads ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 607479209 Ross Hardison, PennState 03208b484979faeebc8888ef15c6f8cb https://www.encodeproject.org/files/ENCFF001MOI/@@download/ENCFF001MOI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOJ bigBed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFB 68473 Ross Hardison, PennState bea2622d0b39d0536e4b23e7ebdef9bb https://www.encodeproject.org/files/ENCFF001MOJ/@@download/ENCFF001MOJ.bigBed mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOK bigBed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFC 216982 Ross Hardison, PennState 90f0b7d08c932b55c4ed1ad3c7a0edcb https://www.encodeproject.org/files/ENCFF001MOK/@@download/ENCFF001MOK.bigBed mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOL bigWig signal ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1368092324 Ross Hardison, PennState aae34ec4e7ec0f60ce072b61ae1b2fba https://www.encodeproject.org/files/ENCFF001MOL/@@download/ENCFF001MOL.bigWig mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MON bigWig signal ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1552492611 Ross Hardison, PennState 0b387dec2bec27dfb39ab125378fb304 https://www.encodeproject.org/files/ENCFF001MON/@@download/ENCFF001MON.bigWig mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MOO bigWig signal ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2612166562 Ross Hardison, PennState c6b8582ab304fca82aa1f5611159111c https://www.encodeproject.org/files/ENCFF001MOO/@@download/ENCFF001MOO.bigWig mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MOP fastq reads ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 598855193 Ross Hardison, PennState e83b2b76f35ed6c0574e5a7ae07a6a99 https://www.encodeproject.org/files/ENCFF001MOP/@@download/ENCFF001MOP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released low read length, low read depth, borderline replicate concordance, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001YFA bed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 68791 Ross Hardison, PennState fa1932b0fd15ca38c6c1022564faefe1 https://www.encodeproject.org/files/ENCFF001YFA/@@download/ENCFF001YFA.bed.gz mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YFB bed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 16749 Ross Hardison, PennState 05950aefda89deec473b3282a62188be https://www.encodeproject.org/files/ENCFF001YFB/@@download/ENCFF001YFB.bed.gz mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YFC bed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 93335 Ross Hardison, PennState 07a171d28430b1b3805293194352d642 https://www.encodeproject.org/files/ENCFF001YFC/@@download/ENCFF001YFC.bed.gz mm9 archived low read length, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF880YQN bam unfiltered alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOP, ENCFF018NEO 737005599 ENCODE Processing Pipeline bd169343d929f486775abd12d428ab7e https://www.encodeproject.org/files/ENCFF880YQN/@@download/ENCFF880YQN.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF545TSO bam unfiltered alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOI, ENCFF018NEO 826402795 ENCODE Processing Pipeline 0bbb324a42eb8ceee6ae6564d83c900f https://www.encodeproject.org/files/ENCFF545TSO/@@download/ENCFF545TSO.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF700PLH bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOP, ENCFF018NEO 494259929 ENCODE Processing Pipeline c902a77cf7f8a330e8e0b4a6ef93b795 https://www.encodeproject.org/files/ENCFF700PLH/@@download/ENCFF700PLH.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF825JNS bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOI, ENCFF018NEO 588169998 ENCODE Processing Pipeline 0bae69cb610c88d8a8da065ef0d926a6 https://www.encodeproject.org/files/ENCFF825JNS/@@download/ENCFF825JNS.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF824DOT bigWig signal p-value ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF700PLH, ENCFF984QUA 910927225 ENCODE Processing Pipeline d3d53fd920f97dbe0c0b490f7e7f681b https://www.encodeproject.org/files/ENCFF824DOT/@@download/ENCFF824DOT.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF893DBP bigWig signal p-value ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF825JNS, ENCFF984QUA 950900592 ENCODE Processing Pipeline d4d926910a915fdecf5d56ce5c1c1664 https://www.encodeproject.org/files/ENCFF893DBP/@@download/ENCFF893DBP.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF840EKX bed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF700PLH, ENCFF984QUA 4969567 ENCODE Processing Pipeline b49cc8e94185ee2c0210e34fb5810993 https://www.encodeproject.org/files/ENCFF840EKX/@@download/ENCFF840EKX.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF689QOZ bigWig fold change over control ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF825JNS, ENCFF984QUA 550437357 ENCODE Processing Pipeline e3d031037fc7ff75952621544caa4ebf https://www.encodeproject.org/files/ENCFF689QOZ/@@download/ENCFF689QOZ.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF630HUU bigWig fold change over control ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF700PLH, ENCFF825JNS, ENCFF984QUA 823806386 ENCODE Processing Pipeline d4e3cbea813b6cf612bf3f702f2cbcfc https://www.encodeproject.org/files/ENCFF630HUU/@@download/ENCFF630HUU.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF746OCU bigBed narrowPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF126SBW 10969845 ENCODE Processing Pipeline 304a09d69b4e470584e21f97bd0b0376 https://www.encodeproject.org/files/ENCFF746OCU/@@download/ENCFF746OCU.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF221YKU bigBed narrowPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF447ABB 11186472 ENCODE Processing Pipeline e284a0fd90b199844d6532a725b71602 https://www.encodeproject.org/files/ENCFF221YKU/@@download/ENCFF221YKU.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF521SJA bigBed narrowPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF840EKX 10458386 ENCODE Processing Pipeline f68c12a08242948783cae70601494b64 https://www.encodeproject.org/files/ENCFF521SJA/@@download/ENCFF521SJA.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF205GXD bed narrowPeak conservative idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF126SBW, ENCFF447ABB, ENCFF547MET, ENCFF840EKX 7642 ENCODE Processing Pipeline 440ce73d41f637807b5d079e82a04790 https://www.encodeproject.org/files/ENCFF205GXD/@@download/ENCFF205GXD.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF932GFP bigWig fold change over control ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF700PLH, ENCFF984QUA 473350474 ENCODE Processing Pipeline 668aac2c07b7cbe95a5995f886c6ea2d https://www.encodeproject.org/files/ENCFF932GFP/@@download/ENCFF932GFP.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF126SBW bed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF825JNS, ENCFF984QUA 5185523 ENCODE Processing Pipeline a73d42eeca1d9cedb30ca4a6ef137bda https://www.encodeproject.org/files/ENCFF126SBW/@@download/ENCFF126SBW.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF755BWA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF205GXD 56671 ENCODE Processing Pipeline 5597e26b2523f701dc891abf96ba7bdb https://www.encodeproject.org/files/ENCFF755BWA/@@download/ENCFF755BWA.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF037ZUL bigWig signal p-value ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF700PLH, ENCFF825JNS, ENCFF984QUA 953981268 ENCODE Processing Pipeline e94781590905de63018ebfea60b5a287 https://www.encodeproject.org/files/ENCFF037ZUL/@@download/ENCFF037ZUL.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF447ABB bed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF700PLH, ENCFF825JNS, ENCFF984QUA 6134527 ENCODE Processing Pipeline 04af7237e7d4e4f2b3adc41e8d758890 https://www.encodeproject.org/files/ENCFF447ABB/@@download/ENCFF447ABB.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF332ZVZ bed narrowPeak optimal idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF126SBW, ENCFF447ABB, ENCFF547MET, ENCFF840EKX 10843 ENCODE Processing Pipeline 2146de6de4c8fabcba289bdd928de53c https://www.encodeproject.org/files/ENCFF332ZVZ/@@download/ENCFF332ZVZ.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF793RUA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF332ZVZ 61712 ENCODE Processing Pipeline 00a1f4924d9bdbe48c4c94894652720e https://www.encodeproject.org/files/ENCFF793RUA/@@download/ENCFF793RUA.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001IHS bigBed narrowPeak peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVJ 146157 Barbara Wold, Caltech 30e04897fcc11bffae2eb7a4b0b2519e https://www.encodeproject.org/files/ENCFF001IHS/@@download/ENCFF001IHS.bigBed mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IHU bigWig signal ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHV 143334792 Barbara Wold, Caltech cef3546161879e2876feb21be3c9d40c https://www.encodeproject.org/files/ENCFF001IHU/@@download/ENCFF001IHU.bigWig mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IHV bam alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIV 1731550511 Barbara Wold, Caltech 0364724d23f03e881d679034106c0ff4 https://www.encodeproject.org/files/ENCFF001IHV/@@download/ENCFF001IHV.bam mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIV fastq reads ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1784114238 Barbara Wold, Caltech d2a3a76954e1b731276404dd7837b5cd https://www.encodeproject.org/files/ENCFF001IIV/@@download/ENCFF001IIV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XVJ bed narrowPeak peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHV 55391 Barbara Wold, Caltech c0813e5ef9d42f8d98ab2833dc3484c5 https://www.encodeproject.org/files/ENCFF001XVJ/@@download/ENCFF001XVJ.bed.gz mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF900XRH bam unfiltered alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIV, ENCFF018NEO 1822059545 ENCODE Processing Pipeline 214810f1f7128707ad5ce76763b30acd https://www.encodeproject.org/files/ENCFF900XRH/@@download/ENCFF900XRH.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF048NTI bam alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIV, ENCFF018NEO 885065243 ENCODE Processing Pipeline 0342ec4399fe5f7fd3b8cb6e64fabfde https://www.encodeproject.org/files/ENCFF048NTI/@@download/ENCFF048NTI.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF004OJP bigWig signal p-value ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF048NTI, ENCFF993HAY 319670161 ENCODE Processing Pipeline a03958ed8754db02d5ffd3ec9fb0efb4 https://www.encodeproject.org/files/ENCFF004OJP/@@download/ENCFF004OJP.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF855MMD bigBed narrowPeak peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF239VTI 8236140 ENCODE Processing Pipeline f3126bc4fb330f15202b1ce4adcef1b0 https://www.encodeproject.org/files/ENCFF855MMD/@@download/ENCFF855MMD.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF897BZI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF239VTI, ENCFF547MET 143586 ENCODE Processing Pipeline 03e6d94fb5a6e3ea52dc4dc56d0fb668 https://www.encodeproject.org/files/ENCFF897BZI/@@download/ENCFF897BZI.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF122ZAR bigWig fold change over control ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF048NTI, ENCFF993HAY 287535685 ENCODE Processing Pipeline 32c140159a331002939e1dc371c704be https://www.encodeproject.org/files/ENCFF122ZAR/@@download/ENCFF122ZAR.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF239VTI bed narrowPeak peaks and background as input for IDR ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF048NTI, ENCFF993HAY 3757644 ENCODE Processing Pipeline 27610289bf44a3ddf77a7482b1ec0305 https://www.encodeproject.org/files/ENCFF239VTI/@@download/ENCFF239VTI.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF138PXA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF897BZI 274584 ENCODE Processing Pipeline 948827e95bbaa5a2b856fdbd4aac4230 https://www.encodeproject.org/files/ENCFF138PXA/@@download/ENCFF138PXA.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IFW bigBed narrowPeak peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVB 977467 Barbara Wold, Caltech 163a2349c5b7de6a8b882a339008d003 https://www.encodeproject.org/files/ENCFF001IFW/@@download/ENCFF001IFW.bigBed mm9 released low read depth insufficient read length ENCFF001IFX fastq reads ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 753641541 Barbara Wold, Caltech c42bc9afc1c8f9096f8fa020d5b49605 https://www.encodeproject.org/files/ENCFF001IFX/@@download/ENCFF001IFX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth insufficient read length ENCFF001IFY fastq reads ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 816435375 Barbara Wold, Caltech f2e59b403158c5553e1fec532a795d11 https://www.encodeproject.org/files/ENCFF001IFY/@@download/ENCFF001IFY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth insufficient read length ENCFF001IFZ bigWig signal ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGJ 143223352 Barbara Wold, Caltech 89dd0b649d76e7e884d3b84f8235f921 https://www.encodeproject.org/files/ENCFF001IFZ/@@download/ENCFF001IFZ.bigWig mm9 released low read depth insufficient read length ENCFF001IGJ bam alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IFX, ENCFF001IFY 1664946822 Barbara Wold, Caltech e86303979b940517297f5d60f8c8b226 https://www.encodeproject.org/files/ENCFF001IGJ/@@download/ENCFF001IGJ.bam mm9 released low read depth insufficient read length ENCFF001XVB bed narrowPeak peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGJ 516228 Barbara Wold, Caltech 428594dd0e085d4a11e822873ca04cda https://www.encodeproject.org/files/ENCFF001XVB/@@download/ENCFF001XVB.bed.gz mm9 released low read depth insufficient read length ENCFF578DNF bam alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFX, ENCFF001IFY, ENCFF018NEO 749420778 ENCODE Processing Pipeline 7e1a6af875ad8ca1c9cffdcc5254c594 https://www.encodeproject.org/files/ENCFF578DNF/@@download/ENCFF578DNF.bam mm10 released low read depth insufficient read length ENCFF645KBC bam unfiltered alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFX, ENCFF001IFY, ENCFF018NEO 1726265709 ENCODE Processing Pipeline 7b1143901b352680d3598b0c088cbf73 https://www.encodeproject.org/files/ENCFF645KBC/@@download/ENCFF645KBC.bam mm10 released low read depth insufficient read length ENCFF019XFU bigWig signal p-value ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF578DNF 355905384 ENCODE Processing Pipeline ed3168c4fc68d6dbe410dc85ae1d5a35 https://www.encodeproject.org/files/ENCFF019XFU/@@download/ENCFF019XFU.bigWig mm10 released low read depth insufficient read length ENCFF684POA bed narrowPeak peaks and background as input for IDR ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF578DNF 6090800 ENCODE Processing Pipeline 1856aa68938472ba26b78ba387769876 https://www.encodeproject.org/files/ENCFF684POA/@@download/ENCFF684POA.bed.gz mm10 released low read depth insufficient read length ENCFF323UQU bigWig fold change over control ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF578DNF 237307181 ENCODE Processing Pipeline e2bd647135efa06fcb7d79d288a55b76 https://www.encodeproject.org/files/ENCFF323UQU/@@download/ENCFF323UQU.bigWig mm10 released low read depth insufficient read length ENCFF540QPX bigBed narrowPeak peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF684POA 11596039 ENCODE Processing Pipeline b6eb12e52222dddca49bcb625c412c8c https://www.encodeproject.org/files/ENCFF540QPX/@@download/ENCFF540QPX.bigBed mm10 released low read depth insufficient read length ENCFF748JFS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF684POA 487096 ENCODE Processing Pipeline 60c4179c86a00b222f594d04831cfe4e https://www.encodeproject.org/files/ENCFF748JFS/@@download/ENCFF748JFS.bed.gz mm10 released low read depth insufficient read length ENCFF080FFJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF748JFS 1080375 ENCODE Processing Pipeline 0150213cda5636aa5ad5af9bbd4ea86a https://www.encodeproject.org/files/ENCFF080FFJ/@@download/ENCFF080FFJ.bigBed mm10 released low read depth insufficient read length ENCFF001IDK bam alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IDX 1041985009 Barbara Wold, Caltech a28a29eaca99af8d06ce953fc3c38dc9 https://www.encodeproject.org/files/ENCFF001IDK/@@download/ENCFF001IDK.bam mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IDL bigBed narrowPeak peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUV 170716 Barbara Wold, Caltech 68bd1b51e4204270ed24d5523dc01254 https://www.encodeproject.org/files/ENCFF001IDL/@@download/ENCFF001IDL.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IDM bigWig signal ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDK 79117281 Barbara Wold, Caltech f86456cb13ed3f1146ae155b9c35b58a https://www.encodeproject.org/files/ENCFF001IDM/@@download/ENCFF001IDM.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IDX fastq reads ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1096025730 Barbara Wold, Caltech b794c3409f9a6c2947a186ed6bc225f2 https://www.encodeproject.org/files/ENCFF001IDX/@@download/ENCFF001IDX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001XUV bed narrowPeak peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDK 76517 Barbara Wold, Caltech df3d39235eaa9d207b7c782feb38d9a0 https://www.encodeproject.org/files/ENCFF001XUV/@@download/ENCFF001XUV.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF228MOR bam unfiltered alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDX, ENCFF018NEO 1087660395 ENCODE Processing Pipeline e97d8724f382ced3d6ff60bd78ca246c https://www.encodeproject.org/files/ENCFF228MOR/@@download/ENCFF228MOR.bam mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF586VMG bam alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDX, ENCFF018NEO 460477938 ENCODE Processing Pipeline a6206673547f0f98662cf2a3b604974e https://www.encodeproject.org/files/ENCFF586VMG/@@download/ENCFF586VMG.bam mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF286MSP bigWig signal p-value ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF586VMG, ENCFF993HAY 247405388 ENCODE Processing Pipeline be24833ea9899b9ef9742525c43690f4 https://www.encodeproject.org/files/ENCFF286MSP/@@download/ENCFF286MSP.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF528UTW bigWig fold change over control ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF586VMG, ENCFF993HAY 157879410 ENCODE Processing Pipeline 61bb0875665393561c9acfbc8f797526 https://www.encodeproject.org/files/ENCFF528UTW/@@download/ENCFF528UTW.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF356CFT bed narrowPeak peaks and background as input for IDR ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF586VMG, ENCFF993HAY 3509569 ENCODE Processing Pipeline 592bd3d342781651f5930945c8932563 https://www.encodeproject.org/files/ENCFF356CFT/@@download/ENCFF356CFT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF196YJL bigBed narrowPeak peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF356CFT 7399133 ENCODE Processing Pipeline bed8d98d546aa0af781f6d4bbc05ccc5 https://www.encodeproject.org/files/ENCFF196YJL/@@download/ENCFF196YJL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF067KOQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF356CFT, ENCFF547MET 51448 ENCODE Processing Pipeline 581c95de62dfffd7a566a6f5d112a40a https://www.encodeproject.org/files/ENCFF067KOQ/@@download/ENCFF067KOQ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF056QPK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF067KOQ 129727 ENCODE Processing Pipeline 88270deb2ba5b3e4c8408caeb6df2589 https://www.encodeproject.org/files/ENCFF056QPK/@@download/ENCFF056QPK.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001IIC bigBed narrowPeak peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVL 487522 Barbara Wold, Caltech af2f17fff8fb45ac994fe84a14ea314a https://www.encodeproject.org/files/ENCFF001IIC/@@download/ENCFF001IIC.bigBed mm9 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IID bigWig signal ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIE 72745329 Barbara Wold, Caltech 8c31ed7c7a5f60b386eb4ded655a9fd4 https://www.encodeproject.org/files/ENCFF001IID/@@download/ENCFF001IID.bigWig mm9 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IIE bam alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIU 1212558869 Barbara Wold, Caltech cf719a6dc330c5655f9eecc7ef260749 https://www.encodeproject.org/files/ENCFF001IIE/@@download/ENCFF001IIE.bam mm9 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IIU fastq reads ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1318756530 Barbara Wold, Caltech 422fc27b552dd0be9a5620ff4fd5833b https://www.encodeproject.org/files/ENCFF001IIU/@@download/ENCFF001IIU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XVL bed narrowPeak peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIE 266529 Barbara Wold, Caltech 431148af96b303b46b78cd361de2a4b3 https://www.encodeproject.org/files/ENCFF001XVL/@@download/ENCFF001XVL.bed.gz mm9 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF975EAF bam unfiltered alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIU, ENCFF018NEO 1260041385 ENCODE Processing Pipeline 9e245a6430d72b17c73ac34d60320725 https://www.encodeproject.org/files/ENCFF975EAF/@@download/ENCFF975EAF.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF727WYC bam alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIU, ENCFF018NEO 418562487 ENCODE Processing Pipeline 8291bdc2cbcc597d4d289760b8b1f990 https://www.encodeproject.org/files/ENCFF727WYC/@@download/ENCFF727WYC.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF603MIB bed narrowPeak peaks and background as input for IDR ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF727WYC, ENCFF993HAY 3600667 ENCODE Processing Pipeline 10d0aeac5f20ee7d87b9f9703e04b63d https://www.encodeproject.org/files/ENCFF603MIB/@@download/ENCFF603MIB.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF086CZH bigBed narrowPeak peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF603MIB 8750640 ENCODE Processing Pipeline 87c60063598b1bbc9e91657772aaa129 https://www.encodeproject.org/files/ENCFF086CZH/@@download/ENCFF086CZH.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF587YHK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF603MIB 168924 ENCODE Processing Pipeline 94f82035c1fd33dc729ec6f386a4686c https://www.encodeproject.org/files/ENCFF587YHK/@@download/ENCFF587YHK.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF415GDF bigWig signal p-value ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF727WYC, ENCFF993HAY 236190654 ENCODE Processing Pipeline c2a797e1aeb1d996c5ef5bd532fa632a https://www.encodeproject.org/files/ENCFF415GDF/@@download/ENCFF415GDF.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF247PFV bigWig fold change over control ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF727WYC, ENCFF993HAY 135711235 ENCODE Processing Pipeline 18d8320b3cf6c8822227e8a2fefbbe40 https://www.encodeproject.org/files/ENCFF247PFV/@@download/ENCFF247PFV.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF410TBI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF587YHK 301387 ENCODE Processing Pipeline 5d5cdd215d0eae0f9fc8268827ea2741 https://www.encodeproject.org/files/ENCFF410TBI/@@download/ENCFF410TBI.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IHA bigBed narrowPeak peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVG 552358 Barbara Wold, Caltech d1c7b7a1d719f5a2dc815dd69488a0d7 https://www.encodeproject.org/files/ENCFF001IHA/@@download/ENCFF001IHA.bigBed mm9 released low read depth insufficient read length ENCFF001IHC fastq reads ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 307444369 Barbara Wold, Caltech d36a07f7c1c0cc506619be1f8c8ef3c7 https://www.encodeproject.org/files/ENCFF001IHC/@@download/ENCFF001IHC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length ENCFF001IHD fastq reads ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 643114405 Barbara Wold, Caltech fcf02ecf04a183a5acbc646c9fc9deab https://www.encodeproject.org/files/ENCFF001IHD/@@download/ENCFF001IHD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length ENCFF001IHE fastq reads ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 623905069 Barbara Wold, Caltech 23073811836324ee3abed2b8bf1aaad4 https://www.encodeproject.org/files/ENCFF001IHE/@@download/ENCFF001IHE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length ENCFF001IHF bigWig signal ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHG 133179903 Barbara Wold, Caltech 1c722c609b578f615bf1ded35f64d5f8 https://www.encodeproject.org/files/ENCFF001IHF/@@download/ENCFF001IHF.bigWig mm9 released low read depth insufficient read length ENCFF001IHG bam alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE 1673154508 Barbara Wold, Caltech a854f6452270167d958fad360e3c5718 https://www.encodeproject.org/files/ENCFF001IHG/@@download/ENCFF001IHG.bam mm9 released low read depth insufficient read length ENCFF001XVG bed narrowPeak peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHG 330689 Barbara Wold, Caltech af0eaeb06f835b1798468f173f62e31f https://www.encodeproject.org/files/ENCFF001XVG/@@download/ENCFF001XVG.bed.gz mm9 released low read depth insufficient read length ENCFF831FSR bam unfiltered alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE, ENCFF018NEO 1748695314 ENCODE Processing Pipeline 8260d93a2bebe95d3d7415766556c100 https://www.encodeproject.org/files/ENCFF831FSR/@@download/ENCFF831FSR.bam mm10 released low read depth insufficient read length ENCFF204AZL bam alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE, ENCFF018NEO 658741352 ENCODE Processing Pipeline 8f84f747b974676c4a23d4d482607fc0 https://www.encodeproject.org/files/ENCFF204AZL/@@download/ENCFF204AZL.bam mm10 released low read depth insufficient read length ENCFF301PHS bigWig signal p-value ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF204AZL 196623050 ENCODE Processing Pipeline 3c892b2bb974b677847d751eab0626a5 https://www.encodeproject.org/files/ENCFF301PHS/@@download/ENCFF301PHS.bigWig mm10 released low read depth insufficient read length ENCFF539PGU bigWig fold change over control ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF204AZL 220263267 ENCODE Processing Pipeline 5f5d54326a714e2a6705aa9a0fae3a78 https://www.encodeproject.org/files/ENCFF539PGU/@@download/ENCFF539PGU.bigWig mm10 released low read depth insufficient read length ENCFF329WSM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF534YYK 832466 ENCODE Processing Pipeline 12a6d2f47adf271e2d029e65baa517f7 https://www.encodeproject.org/files/ENCFF329WSM/@@download/ENCFF329WSM.bigBed mm10 released low read depth insufficient read length ENCFF657WKI bigBed narrowPeak peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF619BMR 10267881 ENCODE Processing Pipeline a833b8aa758adecc1abc21898fbe1837 https://www.encodeproject.org/files/ENCFF657WKI/@@download/ENCFF657WKI.bigBed mm10 released low read depth insufficient read length ENCFF619BMR bed narrowPeak peaks and background as input for IDR ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF204AZL 4440951 ENCODE Processing Pipeline 7b7bfc599d72ada5e79410a090cd379b https://www.encodeproject.org/files/ENCFF619BMR/@@download/ENCFF619BMR.bed.gz mm10 released low read depth insufficient read length ENCFF534YYK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF619BMR 492067 ENCODE Processing Pipeline 767fc0c9145052bd169fa38ea2fd273c https://www.encodeproject.org/files/ENCFF534YYK/@@download/ENCFF534YYK.bed.gz mm10 released low read depth insufficient read length ENCFF001IFR bigBed narrowPeak peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVA 694519 Barbara Wold, Caltech 86ad649193a7b36f39f0fca421a60944 https://www.encodeproject.org/files/ENCFF001IFR/@@download/ENCFF001IFR.bigBed mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF001IFS fastq reads ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 701466814 Barbara Wold, Caltech 7f3c46009e4b62f6bfd78f6067254874 https://www.encodeproject.org/files/ENCFF001IFS/@@download/ENCFF001IFS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF001IFT fastq reads ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 656146691 Barbara Wold, Caltech 7adbaf4d55d962f1e3206850ae89dd7b https://www.encodeproject.org/files/ENCFF001IFT/@@download/ENCFF001IFT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF001IFU bigWig signal ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFV 89148823 Barbara Wold, Caltech c1f5f709b60e5779fa06a904306a1fc6 https://www.encodeproject.org/files/ENCFF001IFU/@@download/ENCFF001IFU.bigWig mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF001IFV bam alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IFS, ENCFF001IFT 1405203986 Barbara Wold, Caltech 58fb0f6446a8fd6223380834bf211365 https://www.encodeproject.org/files/ENCFF001IFV/@@download/ENCFF001IFV.bam mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF001XVA bed narrowPeak peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFV 387321 Barbara Wold, Caltech 6ebcfc51411ffc0ee4af6105c9829f55 https://www.encodeproject.org/files/ENCFF001XVA/@@download/ENCFF001XVA.bed.gz mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF841SDD bam unfiltered alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFS, ENCFF001IFT, ENCFF018NEO 1445562371 ENCODE Processing Pipeline 9246216dc1e6412f0b4727f2d65e23e3 https://www.encodeproject.org/files/ENCFF841SDD/@@download/ENCFF841SDD.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF640NNK bam alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFS, ENCFF001IFT, ENCFF018NEO 506340195 ENCODE Processing Pipeline 746fa4d169cd0596a9608a2a3d6e6a52 https://www.encodeproject.org/files/ENCFF640NNK/@@download/ENCFF640NNK.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF910OZJ bigWig signal p-value ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF640NNK 277063311 ENCODE Processing Pipeline 1e8ee48f92462ed6a093017c776eda43 https://www.encodeproject.org/files/ENCFF910OZJ/@@download/ENCFF910OZJ.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF501CSO bed narrowPeak peaks and background as input for IDR ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF640NNK 5443714 ENCODE Processing Pipeline ba086916990a1199e124b56e6f521fb1 https://www.encodeproject.org/files/ENCFF501CSO/@@download/ENCFF501CSO.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF680DPI bigWig fold change over control ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF640NNK 170519745 ENCODE Processing Pipeline 26242f7e8301db2d8ceb20b6282f4d8a https://www.encodeproject.org/files/ENCFF680DPI/@@download/ENCFF680DPI.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF799XWG bigBed narrowPeak peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF501CSO 11525190 ENCODE Processing Pipeline f91189c435c4789cb2f918bcd0dc2537 https://www.encodeproject.org/files/ENCFF799XWG/@@download/ENCFF799XWG.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF276CXM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF501CSO, ENCFF547MET 421511 ENCODE Processing Pipeline 4eff2d14ae1ab6c2008d65557f28ac4a https://www.encodeproject.org/files/ENCFF276CXM/@@download/ENCFF276CXM.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF636SKZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF276CXM 866672 ENCODE Processing Pipeline aad8c4077a00560078062469e239575f https://www.encodeproject.org/files/ENCFF636SKZ/@@download/ENCFF636SKZ.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read length ENCFF001IGS bigBed narrowPeak peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVD 75922 Barbara Wold, Caltech 43dcbf37151a85839c390fc9f473e52f https://www.encodeproject.org/files/ENCFF001IGS/@@download/ENCFF001IGS.bigBed mm9 released insufficient read length extremely low read depth ENCFF001IGT fastq reads ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 247106585 Barbara Wold, Caltech 3983b946d25c7fe3ea37bb53db932a30 https://www.encodeproject.org/files/ENCFF001IGT/@@download/ENCFF001IGT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read length extremely low read depth ENCFF001IGU fastq reads ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 162862224 Barbara Wold, Caltech e4ca2324f50c9a520ab639336b9ee8d6 https://www.encodeproject.org/files/ENCFF001IGU/@@download/ENCFF001IGU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read length extremely low read depth ENCFF001IGV bigWig signal ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGW 38145652 Barbara Wold, Caltech 24930cfa134084d0cef91b3c8edc0676 https://www.encodeproject.org/files/ENCFF001IGV/@@download/ENCFF001IGV.bigWig mm9 released insufficient read length extremely low read depth ENCFF001IGW bam alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IGT, ENCFF001IGU 453155853 Barbara Wold, Caltech 01c5990529061589f0c23d27136d2d8e https://www.encodeproject.org/files/ENCFF001IGW/@@download/ENCFF001IGW.bam mm9 released insufficient read length extremely low read depth ENCFF001XVD bed narrowPeak peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGW 11349 Barbara Wold, Caltech e43968f4fd9727c3dc9107edeca8b35a https://www.encodeproject.org/files/ENCFF001XVD/@@download/ENCFF001XVD.bed.gz mm9 released insufficient read length extremely low read depth ENCFF364XGA bam alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGT, ENCFF001IGU, ENCFF018NEO 166271651 ENCODE Processing Pipeline 3762a962f3ac3f4724d0b3fc38c5853b https://www.encodeproject.org/files/ENCFF364XGA/@@download/ENCFF364XGA.bam mm10 released insufficient read length extremely low read depth ENCFF235FWM bam unfiltered alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGT, ENCFF001IGU, ENCFF018NEO 478307923 ENCODE Processing Pipeline 40bc84d8c642fc6c06cfdf5014dda3c2 https://www.encodeproject.org/files/ENCFF235FWM/@@download/ENCFF235FWM.bam mm10 released insufficient read length extremely low read depth ENCFF520IQY bigWig signal p-value ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF364XGA 207163539 ENCODE Processing Pipeline 041aa2966b07859307ab7678ff12dd36 https://www.encodeproject.org/files/ENCFF520IQY/@@download/ENCFF520IQY.bigWig mm10 released insufficient read length extremely low read depth ENCFF538JIG bed narrowPeak peaks and background as input for IDR ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF364XGA 1493421 ENCODE Processing Pipeline afc74de8ed7ca180d4cd073254b55769 https://www.encodeproject.org/files/ENCFF538JIG/@@download/ENCFF538JIG.bed.gz mm10 released insufficient read length extremely low read depth ENCFF812OSG bigWig fold change over control ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF364XGA 84449230 ENCODE Processing Pipeline 84c669c60a8162bb96fadb857922aeeb https://www.encodeproject.org/files/ENCFF812OSG/@@download/ENCFF812OSG.bigWig mm10 released insufficient read length extremely low read depth ENCFF996KDC bigBed narrowPeak peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF538JIG 3224733 ENCODE Processing Pipeline e8a283fee84d7650556f2bea0be1aea9 https://www.encodeproject.org/files/ENCFF996KDC/@@download/ENCFF996KDC.bigBed mm10 released insufficient read length extremely low read depth ENCFF980DKG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF538JIG, ENCFF547MET 1008 ENCODE Processing Pipeline 8353e00c6176888e7b441349c58f332c https://www.encodeproject.org/files/ENCFF980DKG/@@download/ENCFF980DKG.bed.gz mm10 released insufficient read length extremely low read depth ENCFF607KIK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF980DKG 30218 ENCODE Processing Pipeline d0d8c5e67fc55e66a1b951748cec2fd6 https://www.encodeproject.org/files/ENCFF607KIK/@@download/ENCFF607KIK.bigBed mm10 released insufficient read length extremely low read depth ENCFF001NQR bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NQU 428286373 Michael Snyder, Stanford 41b4fa8c6605822a8a7b5fbf5120edce https://www.encodeproject.org/files/ENCFF001NQR/@@download/ENCFF001NQR.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQS bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NQW 423624974 Michael Snyder, Stanford 593f048d56fec79b4af7d8af33b2b776 https://www.encodeproject.org/files/ENCFF001NQS/@@download/ENCFF001NQS.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQT bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJH 2970789 Michael Snyder, Stanford d9c869144bd403e945ea1a8b8da7491c https://www.encodeproject.org/files/ENCFF001NQT/@@download/ENCFF001NQT.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQU fastq reads ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 971475366 Michael Snyder, Stanford 0aff2ad97e02a628bdc8c77e1295893e https://www.encodeproject.org/files/ENCFF001NQU/@@download/ENCFF001NQU.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQW fastq reads ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 943303315 Michael Snyder, Stanford a81c6f1a8beb3cc77c48e3f6f4744b76 https://www.encodeproject.org/files/ENCFF001NQW/@@download/ENCFF001NQW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQY bigWig signal ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NQR, ENCFF001NQS 303778333 Michael Snyder, Stanford e3e9d292327e90ab442ed7261e63f707 https://www.encodeproject.org/files/ENCFF001NQY/@@download/ENCFF001NQY.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YJH bed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NQR, ENCFF001NQS 1172175 Michael Snyder, Stanford 75671555a6b2b7ee0cc80b27f8232696 https://www.encodeproject.org/files/ENCFF001YJH/@@download/ENCFF001YJH.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF895QHK bam unfiltered alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 987933688 ENCODE Processing Pipeline 46d0f3b037c29c750736b9bcdc98d3c0 https://www.encodeproject.org/files/ENCFF895QHK/@@download/ENCFF895QHK.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF020AKZ bam unfiltered alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 1003312563 ENCODE Processing Pipeline f04cfbec7a245d59d9ffea1d8225cca3 https://www.encodeproject.org/files/ENCFF020AKZ/@@download/ENCFF020AKZ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF985CUW bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 610485955 ENCODE Processing Pipeline 8131bd3f2960fe0de7233c097b28d7b6 https://www.encodeproject.org/files/ENCFF985CUW/@@download/ENCFF985CUW.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF284CFB bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 610945438 ENCODE Processing Pipeline 23a94bbc142d3cb34c911c39da132a7b https://www.encodeproject.org/files/ENCFF284CFB/@@download/ENCFF284CFB.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF069TSU bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 540589168 ENCODE Processing Pipeline e2605642c15ffb692ef28b7e242aa2a7 https://www.encodeproject.org/files/ENCFF069TSU/@@download/ENCFF069TSU.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF586QBC bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 480493127 ENCODE Processing Pipeline 17c73b3b54ea363174cdda5433ae41dc https://www.encodeproject.org/files/ENCFF586QBC/@@download/ENCFF586QBC.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF695GWJ bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 420085509 ENCODE Processing Pipeline d5f3bcaa7f156ce83b7191b656d6d4d0 https://www.encodeproject.org/files/ENCFF695GWJ/@@download/ENCFF695GWJ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF762XWB bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 323632906 ENCODE Processing Pipeline dbefbc87e01436303b36de6b06d283da https://www.encodeproject.org/files/ENCFF762XWB/@@download/ENCFF762XWB.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF605IRU bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 314138564 ENCODE Processing Pipeline ebfa16c1b35ff8c575c96c2266be32b6 https://www.encodeproject.org/files/ENCFF605IRU/@@download/ENCFF605IRU.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF056UBA bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 520489649 ENCODE Processing Pipeline df45d7684eb5bde900f092b32014c241 https://www.encodeproject.org/files/ENCFF056UBA/@@download/ENCFF056UBA.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF957XPC bed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 4956899 ENCODE Processing Pipeline de00fcf69485a3923ec9cb1563120d11 https://www.encodeproject.org/files/ENCFF957XPC/@@download/ENCFF957XPC.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF406PTJ bed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 4791136 ENCODE Processing Pipeline cc548b90e3c30b2e463d8872d295b283 https://www.encodeproject.org/files/ENCFF406PTJ/@@download/ENCFF406PTJ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF237CIS bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF406PTJ 10950591 ENCODE Processing Pipeline 56dc2f1d6443cb4a69a06eba41d2b98b https://www.encodeproject.org/files/ENCFF237CIS/@@download/ENCFF237CIS.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF897SDH bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF957XPC 10998333 ENCODE Processing Pipeline 8d4d91ba9f0c921fee215d3b1fae1fd1 https://www.encodeproject.org/files/ENCFF897SDH/@@download/ENCFF897SDH.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF855DZF bed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 5451660 ENCODE Processing Pipeline 1cb731023345fce8f1f14b14ca1ca928 https://www.encodeproject.org/files/ENCFF855DZF/@@download/ENCFF855DZF.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF965XFW bed narrowPeak conservative idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF406PTJ, ENCFF547MET, ENCFF855DZF, ENCFF957XPC 605994 ENCODE Processing Pipeline ce3443ca071c3ec6b3b91dc54518b95f https://www.encodeproject.org/files/ENCFF965XFW/@@download/ENCFF965XFW.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF154JIT bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF855DZF 11428941 ENCODE Processing Pipeline 8cd0188f699a8030f19b917607253364 https://www.encodeproject.org/files/ENCFF154JIT/@@download/ENCFF154JIT.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF476QLM bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF965XFW 1091816 ENCODE Processing Pipeline 006699f953ef4de173ac3292a80325aa https://www.encodeproject.org/files/ENCFF476QLM/@@download/ENCFF476QLM.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF430UBN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF235LMU 1189602 ENCODE Processing Pipeline 8663a774dd80cb54c4211088966eeeb1 https://www.encodeproject.org/files/ENCFF430UBN/@@download/ENCFF430UBN.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF235LMU bed narrowPeak optimal idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF406PTJ, ENCFF547MET, ENCFF855DZF, ENCFF957XPC 677637 ENCODE Processing Pipeline bfe9bbfe82c380439b73ca07c830ff17 https://www.encodeproject.org/files/ENCFF235LMU/@@download/ENCFF235LMU.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MSR bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSV 855381825 Ross Hardison, PennState 88db0a4233d4152742a90d42dfb7c900 https://www.encodeproject.org/files/ENCFF001MSR/@@download/ENCFF001MSR.bam mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MSS bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSX 651776919 Ross Hardison, PennState b416e831c3f55da5f8323f64b42647cd https://www.encodeproject.org/files/ENCFF001MSS/@@download/ENCFF001MSS.bam mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MST bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF001MTE 903803568 Ross Hardison, PennState e96ca67fc1416395167882e9741c39eb https://www.encodeproject.org/files/ENCFF001MST/@@download/ENCFF001MST.bam mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MSU bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFY 203306 Ross Hardison, PennState cb9e091aac4a56a364848109989b6117 https://www.encodeproject.org/files/ENCFF001MSU/@@download/ENCFF001MSU.bigBed mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MSV fastq reads ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 672292682 Ross Hardison, PennState 4ce38cf1ae9c5e5fb411592cd025479a https://www.encodeproject.org/files/ENCFF001MSV/@@download/ENCFF001MSV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MSX fastq reads ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 558797102 Ross Hardison, PennState c71e503a65e500f1e10bcabf977170fd https://www.encodeproject.org/files/ENCFF001MSX/@@download/ENCFF001MSX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ archived low read length, low read depth, inconsistent control read length, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MSY bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFZ 182751 Ross Hardison, PennState ec103aa7fea7efdcd5ae9c4b5f6b2363 https://www.encodeproject.org/files/ENCFF001MSY/@@download/ENCFF001MSY.bigBed mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MSZ bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGA 123626 Ross Hardison, PennState eb90534ddc8971edf93f5dd4ffa99dd5 https://www.encodeproject.org/files/ENCFF001MSZ/@@download/ENCFF001MSZ.bigBed mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MTA bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 ENCFF001YGB 114710 Ross Hardison, PennState 011a62e71490d921b3b93dec02766fa9 https://www.encodeproject.org/files/ENCFF001MTA/@@download/ENCFF001MTA.bigBed mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MTB bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1339051693 Ross Hardison, PennState 54722071ab74c8b9c9c964ee183177ac https://www.encodeproject.org/files/ENCFF001MTB/@@download/ENCFF001MTB.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001MTC bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1016254894 Ross Hardison, PennState a66420897156cd8846e4e8a748e7961c https://www.encodeproject.org/files/ENCFF001MTC/@@download/ENCFF001MTC.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001MTD bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 2155159371 Ross Hardison, PennState 37be3b4b1b58fce322245f1e6788e6c7 https://www.encodeproject.org/files/ENCFF001MTD/@@download/ENCFF001MTD.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001MTE fastq reads ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 36 single-ended 757932126 Ross Hardison, PennState 4351f9ccd2005630d560b7bb33d153ec https://www.encodeproject.org/files/ENCFF001MTE/@@download/ENCFF001MTE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, low read depth, inconsistent control read length, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MTF bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 5005431295 Ross Hardison, PennState f7aca7d79fa7ed23bcff16f490472d37 https://www.encodeproject.org/files/ENCFF001MTF/@@download/ENCFF001MTF.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001YFY bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 93171 Ross Hardison, PennState b053e22347759caa8b5fba90e12d4096 https://www.encodeproject.org/files/ENCFF001YFY/@@download/ENCFF001YFY.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001YFZ bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 69681 Ross Hardison, PennState 0009f1dee7b3fddb061d658319f98ab8 https://www.encodeproject.org/files/ENCFF001YFZ/@@download/ENCFF001YFZ.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001YGA bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 51409 Ross Hardison, PennState a8cab9c6ed4244ccce3dd15bd0f257ff https://www.encodeproject.org/files/ENCFF001YGA/@@download/ENCFF001YGA.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001YGB bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 33142 Ross Hardison, PennState 80dfb3aec259405a3001df9cc063dd9c https://www.encodeproject.org/files/ENCFF001YGB/@@download/ENCFF001YGB.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF922YTP bam unfiltered alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSX, ENCFF018NEO 686683348 ENCODE Processing Pipeline e63ced501b812471e0b5f7e315e2a099 https://www.encodeproject.org/files/ENCFF922YTP/@@download/ENCFF922YTP.bam mm10 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF276KNK bam unfiltered alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSV, ENCFF018NEO 896825632 ENCODE Processing Pipeline d0fb942eff4aaee971d903dbeb0b819d https://www.encodeproject.org/files/ENCFF276KNK/@@download/ENCFF276KNK.bam mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF576GPR bam unfiltered alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 36 ENCFF001MTE, ENCFF018NEO 967846450 ENCODE Processing Pipeline b3953b735eb7e72f8055dd78e86643b1 https://www.encodeproject.org/files/ENCFF576GPR/@@download/ENCFF576GPR.bam mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF300WKN bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSX, ENCFF018NEO 455501040 ENCODE Processing Pipeline 3d140f37db93168f48de777e20592a80 https://www.encodeproject.org/files/ENCFF300WKN/@@download/ENCFF300WKN.bam mm10 archived low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF240VBR bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSV, ENCFF018NEO 599735261 ENCODE Processing Pipeline f2b99ba6bb9a17175d389cc0c53d4c67 https://www.encodeproject.org/files/ENCFF240VBR/@@download/ENCFF240VBR.bam mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF515WNW bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 36 ENCFF001MTE, ENCFF018NEO 676725902 ENCODE Processing Pipeline d4f99a104babf80d436da7d8b77a7c2b https://www.encodeproject.org/files/ENCFF515WNW/@@download/ENCFF515WNW.bam mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF999YXW bigWig signal p-value ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF240VBR, ENCFF383IWZ, ENCFF676LVI 816129516 ENCODE Processing Pipeline 25a72794edd1a07a5aa4f4c8123eb6b9 https://www.encodeproject.org/files/ENCFF999YXW/@@download/ENCFF999YXW.bigWig mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF077NGU bigWig signal p-value ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 941672366 ENCODE Processing Pipeline 6c135b198c806f1111d74acee32f19a9 https://www.encodeproject.org/files/ENCFF077NGU/@@download/ENCFF077NGU.bigWig mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF906DTO bigWig signal p-value ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF240VBR, ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 999222249 ENCODE Processing Pipeline 94482cf75ecd56867d81cc52a8d56be5 https://www.encodeproject.org/files/ENCFF906DTO/@@download/ENCFF906DTO.bigWig mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF025ZSL bigWig fold change over control ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF240VBR, ENCFF383IWZ, ENCFF676LVI 645485031 ENCODE Processing Pipeline 67331dcc42479f7aab22798e241172be https://www.encodeproject.org/files/ENCFF025ZSL/@@download/ENCFF025ZSL.bigWig mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF700NKA bigWig fold change over control ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 773160120 ENCODE Processing Pipeline 51b46a09064a8ebe421731e708ff0ef2 https://www.encodeproject.org/files/ENCFF700NKA/@@download/ENCFF700NKA.bigWig mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF140BEA bigBed narrowPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF832MGP 12911521 ENCODE Processing Pipeline f8c3b11c9a5a520b728bc024a9a8b975 https://www.encodeproject.org/files/ENCFF140BEA/@@download/ENCFF140BEA.bigBed mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF754BDS bigWig fold change over control ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF240VBR, ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 1034254770 ENCODE Processing Pipeline 18041ed3c73d9cf262d87c9a12ef0069 https://www.encodeproject.org/files/ENCFF754BDS/@@download/ENCFF754BDS.bigWig mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF832MGP bed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF240VBR, ENCFF383IWZ, ENCFF676LVI 6294711 ENCODE Processing Pipeline 93fe5d37495b6218520404b957bcd869 https://www.encodeproject.org/files/ENCFF832MGP/@@download/ENCFF832MGP.bed.gz mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF157PDK bed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF240VBR, ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 6859818 ENCODE Processing Pipeline 528d4eaa3a74ccef8f3890ca62290a19 https://www.encodeproject.org/files/ENCFF157PDK/@@download/ENCFF157PDK.bed.gz mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF896LWK bigBed narrowPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF157PDK 13115157 ENCODE Processing Pipeline e4f2c47a40e19b4e60fa321d74b553a8 https://www.encodeproject.org/files/ENCFF896LWK/@@download/ENCFF896LWK.bigBed mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF223DYF bed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 6064555 ENCODE Processing Pipeline fed4006b45f231cbef29fd1746f13efe https://www.encodeproject.org/files/ENCFF223DYF/@@download/ENCFF223DYF.bed.gz mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF055LAC bigBed narrowPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF223DYF 13239046 ENCODE Processing Pipeline 866e5cdadf74cb67c2e9c3cf22834ff8 https://www.encodeproject.org/files/ENCFF055LAC/@@download/ENCFF055LAC.bigBed mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF726JZY bed narrowPeak conservative idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF157PDK, ENCFF223DYF, ENCFF547MET, ENCFF832MGP 10045 ENCODE Processing Pipeline 81f025f595c2b89f59ac31465fcda10d https://www.encodeproject.org/files/ENCFF726JZY/@@download/ENCFF726JZY.bed.gz mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF267LBA bed narrowPeak optimal idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF157PDK, ENCFF223DYF, ENCFF547MET, ENCFF832MGP 13967 ENCODE Processing Pipeline 16b8ba3ddd006eb0e9cf4db606eff289 https://www.encodeproject.org/files/ENCFF267LBA/@@download/ENCFF267LBA.bed.gz mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF336ZZG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF726JZY 86997 ENCODE Processing Pipeline c9bf253a1c861f7b5ea3b3650ec82350 https://www.encodeproject.org/files/ENCFF336ZZG/@@download/ENCFF336ZZG.bigBed mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF231SPR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF267LBA 96137 ENCODE Processing Pipeline e2b01fab0932a0fb1f66cb3308cbde66 https://www.encodeproject.org/files/ENCFF231SPR/@@download/ENCFF231SPR.bigBed mm10 released low read length, low read depth, inconsistent platforms missing raw data in replicate, biological replicates with identical biosample ENCFF001MMY bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MNC 1795196070 Ross Hardison, PennState 24a34c8ad88b4e4478b3fc26b6514d06 https://www.encodeproject.org/files/ENCFF001MMY/@@download/ENCFF001MMY.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMZ bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEQ 243579 Ross Hardison, PennState a13a2db1bc58a5cabb57ae18338f5506 https://www.encodeproject.org/files/ENCFF001MMZ/@@download/ENCFF001MMZ.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MNA bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MNL 6475020464 Ross Hardison, PennState b7c19a32e6fe1993793c2e524df79f5b https://www.encodeproject.org/files/ENCFF001MNA/@@download/ENCFF001MNA.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MNB bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF001MNJ 5587631339 Ross Hardison, PennState e56be5dc3d6b7308e482d6d4da1d5ca6 https://www.encodeproject.org/files/ENCFF001MNB/@@download/ENCFF001MNB.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MNC fastq reads ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1419494061 Ross Hardison, PennState e9eb3ca9cd8b04af4776e4d11a5691c1 https://www.encodeproject.org/files/ENCFF001MNC/@@download/ENCFF001MNC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MMU/ released low read length, mixed read lengths, inconsistent platforms ENCFF001MND bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YER 173061 Ross Hardison, PennState 28ae39bf2df11078d79853e03d8eeb23 https://www.encodeproject.org/files/ENCFF001MND/@@download/ENCFF001MND.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MNE bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YES 213757 Ross Hardison, PennState 773f54eb9ff2815bffa199b96283c158 https://www.encodeproject.org/files/ENCFF001MNE/@@download/ENCFF001MNE.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MNF bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 ENCFF001YET 245440 Ross Hardison, PennState 338d55c3245a2f23e01cbfc2f991b387 https://www.encodeproject.org/files/ENCFF001MNF/@@download/ENCFF001MNF.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MNG bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4662733362 Ross Hardison, PennState 7bfb7c156606b8920636821dd14269f6 https://www.encodeproject.org/files/ENCFF001MNG/@@download/ENCFF001MNG.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MNH bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5986041951 Ross Hardison, PennState 79e3930e0dfc09991678bca9421e9900 https://www.encodeproject.org/files/ENCFF001MNH/@@download/ENCFF001MNH.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MNI bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 5775715775 Ross Hardison, PennState cdbeeffaf589a1e3bd67432bb89af0b4 https://www.encodeproject.org/files/ENCFF001MNI/@@download/ENCFF001MNI.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MNJ fastq reads ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 55 single-ended 4875290074 Ross Hardison, PennState ee504f0add00cb01f9559122c27f9831 https://www.encodeproject.org/files/ENCFF001MNJ/@@download/ENCFF001MNJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms ENCFF001MNK bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 6641869504 Ross Hardison, PennState 2cd883cf410c787c08469e680add7079 https://www.encodeproject.org/files/ENCFF001MNK/@@download/ENCFF001MNK.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MNL fastq reads ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 5773488169 Ross Hardison, PennState 58444d05e92e8650890947ef9e882e88 https://www.encodeproject.org/files/ENCFF001MNL/@@download/ENCFF001MNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms ENCFF001YEQ bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 116714 Ross Hardison, PennState e2c2524b7e01de0b3d6b995b30f8a858 https://www.encodeproject.org/files/ENCFF001YEQ/@@download/ENCFF001YEQ.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YER bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 63926 Ross Hardison, PennState 47bac2c8f9de206766bb10ce85e92361 https://www.encodeproject.org/files/ENCFF001YER/@@download/ENCFF001YER.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YES bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 98850 Ross Hardison, PennState 68f1d7ad2801dfb7a868370a2fe146e6 https://www.encodeproject.org/files/ENCFF001YES/@@download/ENCFF001YES.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YET bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 111890 Ross Hardison, PennState 46aee6e9c7772ca6d389b1a773663c21 https://www.encodeproject.org/files/ENCFF001YET/@@download/ENCFF001YET.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF848KIX bam unfiltered alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MNL, ENCFF018NEO 5615389976 ENCODE Processing Pipeline df2ec4a91a33103a32f0ef93c18b1b74 https://www.encodeproject.org/files/ENCFF848KIX/@@download/ENCFF848KIX.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF483OWP bam unfiltered alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MNC, ENCFF018NEO 1897632029 ENCODE Processing Pipeline 630d0bf1522ee00212882642a1382705 https://www.encodeproject.org/files/ENCFF483OWP/@@download/ENCFF483OWP.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF351MTW bam unfiltered alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MNJ, ENCFF018NEO 4887627058 ENCODE Processing Pipeline 7b1068c72593982f85707427192827f6 https://www.encodeproject.org/files/ENCFF351MTW/@@download/ENCFF351MTW.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF465JRB bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MNC, ENCFF018NEO 1392899822 ENCODE Processing Pipeline 8dd163a10e4cf164b8ea5cf1cfbf8d67 https://www.encodeproject.org/files/ENCFF465JRB/@@download/ENCFF465JRB.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF805RXV bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MNJ, ENCFF018NEO 3454386114 ENCODE Processing Pipeline 3e56737ce6408a0b5f178c5d4d8cd17a https://www.encodeproject.org/files/ENCFF805RXV/@@download/ENCFF805RXV.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF826PSX bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MNL, ENCFF018NEO 3474373950 ENCODE Processing Pipeline faca4a6e77de7d6cbb9abc8de6a7f412 https://www.encodeproject.org/files/ENCFF826PSX/@@download/ENCFF826PSX.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF002ARM fastq reads ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 48 single-ended 2909663437 Ross Hardison, PennState a5c5d3acd32093dc8651ba21cb35b59c https://www.encodeproject.org/files/ENCFF002ARM/@@download/ENCFF002ARM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, inconsistent control read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARN bigWig signal ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 4039014560 Ross Hardison, PennState 77b70103fc05c905d9539261b740d326 https://www.encodeproject.org/files/ENCFF002ARN/@@download/ENCFF002ARN.bigWig mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARO fastq reads ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 48 single-ended 2408184776 Ross Hardison, PennState e2135b882d2d8aa45742183ddfe1a5f4 https://www.encodeproject.org/files/ENCFF002ARO/@@download/ENCFF002ARO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, inconsistent control read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARP bigWig signal ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 3574279463 Ross Hardison, PennState 19ce11a9641060c229757a5a9a707390 https://www.encodeproject.org/files/ENCFF002ARP/@@download/ENCFF002ARP.bigWig mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARQ bigWig signal ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 5441205819 Ross Hardison, PennState e8a1c26ab010a4948037c4b66a54f03f https://www.encodeproject.org/files/ENCFF002ARQ/@@download/ENCFF002ARQ.bigWig mm9 released low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002ART bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF002ARM 3469272004 Ross Hardison, PennState 37c4099576617340724b953f4a1fa4e7 https://www.encodeproject.org/files/ENCFF002ART/@@download/ENCFF002ART.bam mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARU bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF002ARO 2871827788 Ross Hardison, PennState e120829f0969881d0032f8e47655f650 https://www.encodeproject.org/files/ENCFF002ARU/@@download/ENCFF002ARU.bam mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARV bigBed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 83395 Ross Hardison, PennState 3687561a0e7485384277278ace1df384 https://www.encodeproject.org/files/ENCFF002ARV/@@download/ENCFF002ARV.bigBed mm9 released low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002ARW bigBed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 229051 Ross Hardison, PennState b26edf099a36662d77d4b9bf7d27df44 https://www.encodeproject.org/files/ENCFF002ARW/@@download/ENCFF002ARW.bigBed mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARX bigBed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 199060 Ross Hardison, PennState 79335b02f93a83b7a0286c2c91977919 https://www.encodeproject.org/files/ENCFF002ARX/@@download/ENCFF002ARX.bigBed mm9 released low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002ARY bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 6131974109 Ross Hardison, PennState a80f6b04c8fd753fee769c0efe6ea86d https://www.encodeproject.org/files/ENCFF002ARY/@@download/ENCFF002ARY.bam mm9 released low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF352RFJ bed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 ENCFF002ARW 96858 ENCODE Consortium c4c59350823ba74733f46bb7ed64f82f https://www.encodeproject.org/files/ENCFF352RFJ/@@download/ENCFF352RFJ.bed.gz mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF114LXT bed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 ENCFF002ARV 21083 ENCODE Consortium aa8294980d2be4b87fdb339c1ff3b109 https://www.encodeproject.org/files/ENCFF114LXT/@@download/ENCFF114LXT.bed.gz mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF830QDG bed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE ENCFF002ARX 82609 ENCODE Consortium 03886d189a281a316b082f7d28c7981c https://www.encodeproject.org/files/ENCFF830QDG/@@download/ENCFF830QDG.bed.gz mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF723AFL bam unfiltered alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 45 ENCFF002ARM, ENCFF018NEO 3540149422 ENCODE Processing Pipeline e883e599c8b96517bc69d404149c1cd2 https://www.encodeproject.org/files/ENCFF723AFL/@@download/ENCFF723AFL.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF450RZA bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 45 ENCFF002ARO, ENCFF018NEO 1988137415 ENCODE Processing Pipeline 43e644c19c622915082510f8b2f8199a https://www.encodeproject.org/files/ENCFF450RZA/@@download/ENCFF450RZA.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF556WXR bam unfiltered alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 45 ENCFF002ARO, ENCFF018NEO 2929705959 ENCODE Processing Pipeline 0eeb90a50464e0ed393e0b7711818a70 https://www.encodeproject.org/files/ENCFF556WXR/@@download/ENCFF556WXR.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF684OCY bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 45 ENCFF002ARM, ENCFF018NEO 2470498456 ENCODE Processing Pipeline c878852ee6e7f82ec432f20e50496c9e https://www.encodeproject.org/files/ENCFF684OCY/@@download/ENCFF684OCY.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF121YLV bigWig fold change over control ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF684OCY 970768473 ENCODE Processing Pipeline f9ac660f89f6157780c13a2241b3acec https://www.encodeproject.org/files/ENCFF121YLV/@@download/ENCFF121YLV.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF469EIJ bigWig fold change over control ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF111OFQ, ENCFF450RZA 713267694 ENCODE Processing Pipeline 949bc9e1b70c2496ae9ef26f1d548d5e https://www.encodeproject.org/files/ENCFF469EIJ/@@download/ENCFF469EIJ.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF238TDR bed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF111OFQ, ENCFF450RZA 5414232 ENCODE Processing Pipeline 866d6a2a15f049f8403dd628edfcc67c https://www.encodeproject.org/files/ENCFF238TDR/@@download/ENCFF238TDR.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF563AVR bigBed narrowPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF403ZTD 11267483 ENCODE Processing Pipeline dbc862ad1b018d0bc37e79b809d365d7 https://www.encodeproject.org/files/ENCFF563AVR/@@download/ENCFF563AVR.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF499ROE bed narrowPeak conservative idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF238TDR, ENCFF403ZTD, ENCFF417EAQ, ENCFF547MET 47586 ENCODE Processing Pipeline 1bae2e19ee401f85d8cadb79821d7583 https://www.encodeproject.org/files/ENCFF499ROE/@@download/ENCFF499ROE.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF260LIT bigBed narrowPeak optimal idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF609NWN 173217 ENCODE Processing Pipeline ed14defa21d1c9239f0abf28e2e4a2cb https://www.encodeproject.org/files/ENCFF260LIT/@@download/ENCFF260LIT.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF934VUS bigWig signal p-value ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF684OCY 810553821 ENCODE Processing Pipeline 1b4a21adb5e68a07481aeb834dd22abf https://www.encodeproject.org/files/ENCFF934VUS/@@download/ENCFF934VUS.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF417EAQ bed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF684OCY 5992390 ENCODE Processing Pipeline 8dff11e988fe337f7adad96a2cc0c934 https://www.encodeproject.org/files/ENCFF417EAQ/@@download/ENCFF417EAQ.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF609NWN bed narrowPeak optimal idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF238TDR, ENCFF403ZTD, ENCFF417EAQ, ENCFF547MET 70748 ENCODE Processing Pipeline d16843514657d5af3a155a0cb2fc8739 https://www.encodeproject.org/files/ENCFF609NWN/@@download/ENCFF609NWN.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF403ZTD bed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF111OFQ, ENCFF450RZA, ENCFF666VRA, ENCFF684OCY 6935721 ENCODE Processing Pipeline b628f600a15648d094cb3576b27c1b3e https://www.encodeproject.org/files/ENCFF403ZTD/@@download/ENCFF403ZTD.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF275CFP bigBed narrowPeak conservative idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF499ROE 114158 ENCODE Processing Pipeline 9108a28ef64f628ec60641b76fe10819 https://www.encodeproject.org/files/ENCFF275CFP/@@download/ENCFF275CFP.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF850CTR bigWig signal p-value ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF111OFQ, ENCFF450RZA 664965246 ENCODE Processing Pipeline 60f6cdce40f73613b8f7f0162790f823 https://www.encodeproject.org/files/ENCFF850CTR/@@download/ENCFF850CTR.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF557JSL bigWig signal p-value ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF111OFQ, ENCFF450RZA, ENCFF666VRA, ENCFF684OCY 1148098247 ENCODE Processing Pipeline 5fcf25be48cc2e147ff49a1d9b9c74c5 https://www.encodeproject.org/files/ENCFF557JSL/@@download/ENCFF557JSL.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF619BQO bigWig fold change over control ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF111OFQ, ENCFF450RZA, ENCFF666VRA, ENCFF684OCY 1361173617 ENCODE Processing Pipeline a0552079f16af9e6ccb4af483c7c3b95 https://www.encodeproject.org/files/ENCFF619BQO/@@download/ENCFF619BQO.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF975QSD bigBed narrowPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF417EAQ 11378375 ENCODE Processing Pipeline 18851e7ac263afe8c6d0a982e79f73ad https://www.encodeproject.org/files/ENCFF975QSD/@@download/ENCFF975QSD.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF527XTP bigBed narrowPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF238TDR 11348997 ENCODE Processing Pipeline f7cd6daf1deb05584f249e536aa38668 https://www.encodeproject.org/files/ENCFF527XTP/@@download/ENCFF527XTP.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF001IGK bigBed narrowPeak peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVE 987416 Barbara Wold, Caltech 2ceb94a6ee9b7353563161eecd6f130e https://www.encodeproject.org/files/ENCFF001IGK/@@download/ENCFF001IGK.bigBed mm9 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGL fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 354505514 Barbara Wold, Caltech ab3de5ee627beead9f205872d0804df4 https://www.encodeproject.org/files/ENCFF001IGL/@@download/ENCFF001IGL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGM fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 468789419 Barbara Wold, Caltech d1f4b24c557959ebb259576a66c2c303 https://www.encodeproject.org/files/ENCFF001IGM/@@download/ENCFF001IGM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGN fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 569539236 Barbara Wold, Caltech 04479943668dadbb10e2c0a6edc12665 https://www.encodeproject.org/files/ENCFF001IGN/@@download/ENCFF001IGN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGO fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 409630624 Barbara Wold, Caltech bb2fe9f30ca70354a3df29cf49e72345 https://www.encodeproject.org/files/ENCFF001IGO/@@download/ENCFF001IGO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGP fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 350416581 Barbara Wold, Caltech 1b4ff10730de588c66174eba18481e24 https://www.encodeproject.org/files/ENCFF001IGP/@@download/ENCFF001IGP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGQ fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 361993040 Barbara Wold, Caltech c9c3d293a70231cc4c5dc26bb6b0e39f https://www.encodeproject.org/files/ENCFF001IGQ/@@download/ENCFF001IGQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IGR bigWig signal ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHB 130474093 Barbara Wold, Caltech b490553a42c6914d5394880101b3fdfb https://www.encodeproject.org/files/ENCFF001IGR/@@download/ENCFF001IGR.bigWig mm9 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001IHB bam alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ 2573873462 Barbara Wold, Caltech 5a15994c672069a170b212dd129e16a7 https://www.encodeproject.org/files/ENCFF001IHB/@@download/ENCFF001IHB.bam mm9 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001XVE bed narrowPeak peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHB 562073 Barbara Wold, Caltech 93ccb8a660b7bee933555e07b415ca78 https://www.encodeproject.org/files/ENCFF001XVE/@@download/ENCFF001XVE.bed.gz mm9 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF439IMG bam unfiltered alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ, ENCFF018NEO 2651117488 ENCODE Processing Pipeline 4439a3fc5374693f9e84b121c71af9c6 https://www.encodeproject.org/files/ENCFF439IMG/@@download/ENCFF439IMG.bam mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF194DXG bam alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ, ENCFF018NEO 615283563 ENCODE Processing Pipeline b002458df956692115f27295cffb0d66 https://www.encodeproject.org/files/ENCFF194DXG/@@download/ENCFF194DXG.bam mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF804NRW bigWig signal p-value ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF194DXG, ENCFF258NUS 357386113 ENCODE Processing Pipeline 74420181e11764ccf912ed708072684e https://www.encodeproject.org/files/ENCFF804NRW/@@download/ENCFF804NRW.bigWig mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF059BXG bigWig fold change over control ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF194DXG, ENCFF258NUS 247531438 ENCODE Processing Pipeline c98ed6c9e587db603df356ecc8ea552b https://www.encodeproject.org/files/ENCFF059BXG/@@download/ENCFF059BXG.bigWig mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF431UTD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF118YGD, ENCFF547MET 552921 ENCODE Processing Pipeline 9747916c759c892baee88aa8ba74e62c https://www.encodeproject.org/files/ENCFF431UTD/@@download/ENCFF431UTD.bed.gz mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF118YGD bed narrowPeak peaks and background as input for IDR ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF194DXG, ENCFF258NUS 5197946 ENCODE Processing Pipeline 50603f7d49ad4dabff171f890b99a930 https://www.encodeproject.org/files/ENCFF118YGD/@@download/ENCFF118YGD.bed.gz mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF733GLH bigBed narrowPeak peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF118YGD 10627464 ENCODE Processing Pipeline 4fe0910f1fae6dfca792e3a9c9d366ff https://www.encodeproject.org/files/ENCFF733GLH/@@download/ENCFF733GLH.bigBed mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF147NFZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF431UTD 903051 ENCODE Processing Pipeline e44266daecbe0c64d347440e10a5879f https://www.encodeproject.org/files/ENCFF147NFZ/@@download/ENCFF147NFZ.bigBed mm10 released low read depth, mild to moderate bottlenecking insufficient read length ENCFF001ICS bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001ICX 1150640389 Barbara Wold, Caltech 5da2e6f49a64501a355c5c0d516b4616 https://www.encodeproject.org/files/ENCFF001ICS/@@download/ENCFF001ICS.bam mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICT bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF001IDC 1043094361 Barbara Wold, Caltech 243fea0f930c4cba1ff53e9af9484d69 https://www.encodeproject.org/files/ENCFF001ICT/@@download/ENCFF001ICT.bam mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICU bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUS 250153 Barbara Wold, Caltech 40fcfc92fae77810c87d6a4d90cdff56 https://www.encodeproject.org/files/ENCFF001ICU/@@download/ENCFF001ICU.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICV bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 ENCFF001XUR 234485 Barbara Wold, Caltech e079e1d9b24de902d366c9649fcf98f3 https://www.encodeproject.org/files/ENCFF001ICV/@@download/ENCFF001ICV.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICX fastq reads ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1240921929 Barbara Wold, Caltech dfd51e8b8085f88f932fb39a06ef0104 https://www.encodeproject.org/files/ENCFF001ICX/@@download/ENCFF001ICX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICY bigWig signal ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001ICS 81168122 Barbara Wold, Caltech 9785cfe60211bdc2b53789e6ae286c4b https://www.encodeproject.org/files/ENCFF001ICY/@@download/ENCFF001ICY.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICZ bigWig signal ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 ENCFF001ICT 82713070 Barbara Wold, Caltech 2803e0334bcd717e0eb8bc22d1bd1e82 https://www.encodeproject.org/files/ENCFF001ICZ/@@download/ENCFF001ICZ.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IDC fastq reads ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 50 single-ended 1063634878 Barbara Wold, Caltech b892c626867f7786070f89cced35838e https://www.encodeproject.org/files/ENCFF001IDC/@@download/ENCFF001IDC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEZ/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XUR bed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 ENCFF001ICT 121690 Barbara Wold, Caltech 8a2cc7c85dcf2f32b0afaba99ea2daa9 https://www.encodeproject.org/files/ENCFF001XUR/@@download/ENCFF001XUR.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XUS bed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001ICS 130452 Barbara Wold, Caltech 4f0b932ff5d9c1b878af9862f9e722be https://www.encodeproject.org/files/ENCFF001XUS/@@download/ENCFF001XUS.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF604PHR bam unfiltered alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IDC, ENCFF018NEO 1097643069 ENCODE Processing Pipeline 9d32ff7e4b1d4979ef9fe97d3acbc064 https://www.encodeproject.org/files/ENCFF604PHR/@@download/ENCFF604PHR.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF893WUP bam unfiltered alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001ICX, ENCFF018NEO 1209007826 ENCODE Processing Pipeline 8e8999ef78d25d5b93f852c654126d0b https://www.encodeproject.org/files/ENCFF893WUP/@@download/ENCFF893WUP.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF905YWG bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001ICX, ENCFF018NEO 452391859 ENCODE Processing Pipeline ff1f81ad9b9f53cea1c356ce05020d53 https://www.encodeproject.org/files/ENCFF905YWG/@@download/ENCFF905YWG.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF307YNO bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IDC, ENCFF018NEO 557062983 ENCODE Processing Pipeline 8343fb22ba8ad20ee322754e4eec2f7a https://www.encodeproject.org/files/ENCFF307YNO/@@download/ENCFF307YNO.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF443KXE bigWig fold change over control ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF290FPB, ENCFF307YNO, ENCFF993HAY 253574169 ENCODE Processing Pipeline 3e443560360302d6cd9a96bd6757cecb https://www.encodeproject.org/files/ENCFF443KXE/@@download/ENCFF443KXE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF384DTJ bigWig fold change over control ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF290FPB, ENCFF905YWG, ENCFF993HAY 219576952 ENCODE Processing Pipeline 0303634021fbb2bd85182f34d0dbb9d3 https://www.encodeproject.org/files/ENCFF384DTJ/@@download/ENCFF384DTJ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF042VSD bed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF290FPB, ENCFF307YNO, ENCFF905YWG, ENCFF993HAY 4945689 ENCODE Processing Pipeline 64f229703430b660715be9cb7b0059f5 https://www.encodeproject.org/files/ENCFF042VSD/@@download/ENCFF042VSD.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF742XUO bigWig signal p-value ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF290FPB, ENCFF905YWG, ENCFF993HAY 513846831 ENCODE Processing Pipeline a82fc2a3932628fba10f622c969a5be0 https://www.encodeproject.org/files/ENCFF742XUO/@@download/ENCFF742XUO.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF681SEZ bigWig signal p-value ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF290FPB, ENCFF307YNO, ENCFF905YWG, ENCFF993HAY 479343337 ENCODE Processing Pipeline aa3a47e4ca2fb2845274d2c402d98866 https://www.encodeproject.org/files/ENCFF681SEZ/@@download/ENCFF681SEZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF255COK bed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF290FPB, ENCFF905YWG, ENCFF993HAY 3857327 ENCODE Processing Pipeline 3b97618fd2d6a552319ebe7ea7304e74 https://www.encodeproject.org/files/ENCFF255COK/@@download/ENCFF255COK.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF980ZHP bed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF290FPB, ENCFF307YNO, ENCFF993HAY 4464504 ENCODE Processing Pipeline b24449f903fd8db7c0e44dbf37a4e907 https://www.encodeproject.org/files/ENCFF980ZHP/@@download/ENCFF980ZHP.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF986QOL bed narrowPeak optimal idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF042VSD, ENCFF255COK, ENCFF547MET, ENCFF980ZHP 276403 ENCODE Processing Pipeline 8cd66cd28d12f9821022575c15716172 https://www.encodeproject.org/files/ENCFF986QOL/@@download/ENCFF986QOL.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF497BVP bigWig signal p-value ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF290FPB, ENCFF307YNO, ENCFF993HAY 371667806 ENCODE Processing Pipeline 02333a23afd25d668734025c2e85ba48 https://www.encodeproject.org/files/ENCFF497BVP/@@download/ENCFF497BVP.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF608CCM bed narrowPeak conservative idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF042VSD, ENCFF255COK, ENCFF547MET, ENCFF980ZHP 248132 ENCODE Processing Pipeline 9844d803b40d05684ac0c0ed7a40d6e7 https://www.encodeproject.org/files/ENCFF608CCM/@@download/ENCFF608CCM.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF096FAR bigWig fold change over control ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF290FPB, ENCFF307YNO, ENCFF905YWG, ENCFF993HAY 410770167 ENCODE Processing Pipeline 7da69f7e51cade102bc4069eb3178b33 https://www.encodeproject.org/files/ENCFF096FAR/@@download/ENCFF096FAR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF318ENJ bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF042VSD 11184295 ENCODE Processing Pipeline d94654178b55dfb20d8f39899eb766df https://www.encodeproject.org/files/ENCFF318ENJ/@@download/ENCFF318ENJ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF665GFP bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF255COK 8174343 ENCODE Processing Pipeline 823792dd10f9d7fcddad99cbe135b1db https://www.encodeproject.org/files/ENCFF665GFP/@@download/ENCFF665GFP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF941IIZ bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF980ZHP 10604512 ENCODE Processing Pipeline 79d401bbbb753716fceef8797ccf52e7 https://www.encodeproject.org/files/ENCFF941IIZ/@@download/ENCFF941IIZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF411VYH bigBed narrowPeak conservative idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF608CCM 524652 ENCODE Processing Pipeline 9b0d23a6e4ee2e9efdd1550b969d1dde https://www.encodeproject.org/files/ENCFF411VYH/@@download/ENCFF411VYH.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF495YGU bigBed narrowPeak optimal idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF986QOL 567475 ENCODE Processing Pipeline b80befdad8d3cb499662fb97f2c03721 https://www.encodeproject.org/files/ENCFF495YGU/@@download/ENCFF495YGU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IIG bigBed narrowPeak peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVM 353496 Barbara Wold, Caltech 1c62b3e6142e3e6de3eb079c1a8f40b1 https://www.encodeproject.org/files/ENCFF001IIG/@@download/ENCFF001IIG.bigBed mm9 released insufficient read depth, insufficient read length ENCFF001IIH fastq reads ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 495853863 Barbara Wold, Caltech 50141b166155402169a7730a09fa2c56 https://www.encodeproject.org/files/ENCFF001IIH/@@download/ENCFF001IIH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released insufficient read depth, insufficient read length ENCFF001III fastq reads ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 490321587 Barbara Wold, Caltech 29f88c2bcc6f9d3e92acc8281ce80c11 https://www.encodeproject.org/files/ENCFF001III/@@download/ENCFF001III.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released insufficient read depth, insufficient read length ENCFF001IIJ bigWig signal ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIK 91487060 Barbara Wold, Caltech 6c70b21415a36ee2d5beab5a469e8fb9 https://www.encodeproject.org/files/ENCFF001IIJ/@@download/ENCFF001IIJ.bigWig mm9 released insufficient read depth, insufficient read length ENCFF001IIK bam alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIH, ENCFF001III 1060797117 Barbara Wold, Caltech d12d8e0f23ad6ead47d991a9be5e657b https://www.encodeproject.org/files/ENCFF001IIK/@@download/ENCFF001IIK.bam mm9 released insufficient read depth, insufficient read length ENCFF001XVM bed narrowPeak peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIK 166494 Barbara Wold, Caltech bd514a1bdc0e656a4cf5728be848520f https://www.encodeproject.org/files/ENCFF001XVM/@@download/ENCFF001XVM.bed.gz mm9 released insufficient read depth, insufficient read length ENCFF302FXR bam alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IIH, ENCFF001III, ENCFF018NEO 440111743 ENCODE Processing Pipeline 7c09d69a9b16b08023d9dbaeb56dead6 https://www.encodeproject.org/files/ENCFF302FXR/@@download/ENCFF302FXR.bam mm10 released insufficient read depth, insufficient read length ENCFF236MHA bam unfiltered alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IIH, ENCFF001III, ENCFF018NEO 1116965724 ENCODE Processing Pipeline f5e89b98ed8beea5cdf15266121c8e6b https://www.encodeproject.org/files/ENCFF236MHA/@@download/ENCFF236MHA.bam mm10 released insufficient read depth, insufficient read length ENCFF461PDW bigWig signal p-value ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF302FXR 276687513 ENCODE Processing Pipeline 3fc45e88709282dcead03bdfe2b54ce6 https://www.encodeproject.org/files/ENCFF461PDW/@@download/ENCFF461PDW.bigWig mm10 released insufficient read depth, insufficient read length ENCFF565MVR bigWig fold change over control ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF302FXR 201036801 ENCODE Processing Pipeline bd2e52a679a5718a299218d22af90676 https://www.encodeproject.org/files/ENCFF565MVR/@@download/ENCFF565MVR.bigWig mm10 released insufficient read depth, insufficient read length ENCFF786ZJY bigBed narrowPeak peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF142QDG 8351928 ENCODE Processing Pipeline ee0d179f4f56d1e26086d527501127ca https://www.encodeproject.org/files/ENCFF786ZJY/@@download/ENCFF786ZJY.bigBed mm10 released insufficient read depth, insufficient read length ENCFF142QDG bed narrowPeak peaks and background as input for IDR ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF302FXR 3445941 ENCODE Processing Pipeline 51f89ac10300e2e2d4cb42f8f5493d13 https://www.encodeproject.org/files/ENCFF142QDG/@@download/ENCFF142QDG.bed.gz mm10 released insufficient read depth, insufficient read length ENCFF933CLI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF142QDG, ENCFF547MET 121031 ENCODE Processing Pipeline bef47708278d501d18c651f8ae5c186f https://www.encodeproject.org/files/ENCFF933CLI/@@download/ENCFF933CLI.bed.gz mm10 released insufficient read depth, insufficient read length ENCFF174CKJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF933CLI 245052 ENCODE Processing Pipeline a4fca433d4611c518f9f0b222c085db2 https://www.encodeproject.org/files/ENCFF174CKJ/@@download/ENCFF174CKJ.bigBed mm10 released insufficient read depth, insufficient read length ENCFF001IIO bam alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIY 1345892990 Barbara Wold, Caltech ea1475e136c675a8201b0547d8280da7 https://www.encodeproject.org/files/ENCFF001IIO/@@download/ENCFF001IIO.bam mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIP bigBed narrowPeak peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVO 250295 Barbara Wold, Caltech a524efb9456bd86ad4d93e55254a5bd1 https://www.encodeproject.org/files/ENCFF001IIP/@@download/ENCFF001IIP.bigBed mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIQ bigWig signal ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIO 117514738 Barbara Wold, Caltech 6ceb1d58affb3e512a655ccc577add4e https://www.encodeproject.org/files/ENCFF001IIQ/@@download/ENCFF001IIQ.bigWig mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IIY fastq reads ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1339549842 Barbara Wold, Caltech 681efd1b1d4497a0a69aaf84925de5fb https://www.encodeproject.org/files/ENCFF001IIY/@@download/ENCFF001IIY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XVO bed narrowPeak peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIO 143366 Barbara Wold, Caltech 7d086c774026f87e0a28495368753b37 https://www.encodeproject.org/files/ENCFF001XVO/@@download/ENCFF001XVO.bed.gz mm9 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF543SHJ bam alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIY, ENCFF018NEO 841845838 ENCODE Processing Pipeline 6c5b1ed70b61dc20541c2f0d340e22fd https://www.encodeproject.org/files/ENCFF543SHJ/@@download/ENCFF543SHJ.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF769RRI bam unfiltered alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIY, ENCFF018NEO 1418998439 ENCODE Processing Pipeline 7a188084f468f5367598a8f6b97df2f1 https://www.encodeproject.org/files/ENCFF769RRI/@@download/ENCFF769RRI.bam mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF528CMM bigWig signal p-value ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF543SHJ, ENCFF875IDP 250275211 ENCODE Processing Pipeline f4be799b1131a6fa0696eadb0ccc8ad1 https://www.encodeproject.org/files/ENCFF528CMM/@@download/ENCFF528CMM.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF602DCT bigWig fold change over control ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF543SHJ, ENCFF875IDP 239069078 ENCODE Processing Pipeline 113d0434c7bce254b6863796c66ea6ae https://www.encodeproject.org/files/ENCFF602DCT/@@download/ENCFF602DCT.bigWig mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF345HJJ bed narrowPeak peaks and background as input for IDR ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF543SHJ, ENCFF875IDP 4037611 ENCODE Processing Pipeline bf5805aff96a48e4e6dd5bab94ff2ed1 https://www.encodeproject.org/files/ENCFF345HJJ/@@download/ENCFF345HJJ.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF524EYE bigBed narrowPeak peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF345HJJ 10031807 ENCODE Processing Pipeline 3830f5d087d8b540ea6e187316fe7f1c https://www.encodeproject.org/files/ENCFF524EYE/@@download/ENCFF524EYE.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF338PWF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF997JWU 510179 ENCODE Processing Pipeline adc074144e5e6c6be8eac1a293e5d4b7 https://www.encodeproject.org/files/ENCFF338PWF/@@download/ENCFF338PWF.bigBed mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF997JWU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF345HJJ, ENCFF547MET 245433 ENCODE Processing Pipeline abed0f38952275df9994667d174de359 https://www.encodeproject.org/files/ENCFF997JWU/@@download/ENCFF997JWU.bed.gz mm10 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001IFF bam alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IGF 1152923923 Barbara Wold, Caltech 8e92bb624def14e766fd014553317c8b https://www.encodeproject.org/files/ENCFF001IFF/@@download/ENCFF001IFF.bam mm9 released low read depth, mild to moderate bottlenecking ENCFF001IFG bigBed narrowPeak peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUX 117975 Barbara Wold, Caltech 7a79a59eb8df0de64035fb0b7c7b05f5 https://www.encodeproject.org/files/ENCFF001IFG/@@download/ENCFF001IFG.bigBed mm9 released low read depth, mild to moderate bottlenecking ENCFF001IFH bigWig signal ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFF 110669147 Barbara Wold, Caltech 9cb8331f243ca4f1c9a8497539f14d1c https://www.encodeproject.org/files/ENCFF001IFH/@@download/ENCFF001IFH.bigWig mm9 released low read depth, mild to moderate bottlenecking ENCFF001IGF fastq reads ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1131571291 Barbara Wold, Caltech 692b6156dd527c2bb75f6a8ac82cc030 https://www.encodeproject.org/files/ENCFF001IGF/@@download/ENCFF001IGF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released low read depth, mild to moderate bottlenecking ENCFF001XUX bed narrowPeak peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFF 37019 Barbara Wold, Caltech f67b20767430c21d35a53a7dfc890630 https://www.encodeproject.org/files/ENCFF001XUX/@@download/ENCFF001XUX.bed.gz mm9 released low read depth, mild to moderate bottlenecking ENCFF539VUI bam unfiltered alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IGF, ENCFF018NEO 1220676108 ENCODE Processing Pipeline 2f08ef52ad45b4a065a374463b8c409a https://www.encodeproject.org/files/ENCFF539VUI/@@download/ENCFF539VUI.bam mm10 released low read depth, mild to moderate bottlenecking ENCFF147NVK bam alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IGF, ENCFF018NEO 764869572 ENCODE Processing Pipeline 0dd1a4fe44f1ae59300f4f2ea4654aec https://www.encodeproject.org/files/ENCFF147NVK/@@download/ENCFF147NVK.bam mm10 released low read depth, mild to moderate bottlenecking ENCFF720ENE bigWig signal p-value ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF147NVK, ENCFF993HAY 319063913 ENCODE Processing Pipeline a9978eb3389ecef1e9440bc077ae4a0a https://www.encodeproject.org/files/ENCFF720ENE/@@download/ENCFF720ENE.bigWig mm10 released low read depth, mild to moderate bottlenecking ENCFF595PRV bigWig fold change over control ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF147NVK, ENCFF993HAY 240725608 ENCODE Processing Pipeline f678bff89baf89da8b6efe6f9ccf4336 https://www.encodeproject.org/files/ENCFF595PRV/@@download/ENCFF595PRV.bigWig mm10 released low read depth, mild to moderate bottlenecking ENCFF706VAZ bed narrowPeak peaks and background as input for IDR ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF147NVK, ENCFF993HAY 3863797 ENCODE Processing Pipeline 3cb709b2752668bad55c4e55e5e33c2f https://www.encodeproject.org/files/ENCFF706VAZ/@@download/ENCFF706VAZ.bed.gz mm10 released low read depth, mild to moderate bottlenecking ENCFF116EOG bigBed narrowPeak peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF706VAZ 7921521 ENCODE Processing Pipeline 2f49dd68273204e4a3c3bb7cbf012f1c https://www.encodeproject.org/files/ENCFF116EOG/@@download/ENCFF116EOG.bigBed mm10 released low read depth, mild to moderate bottlenecking ENCFF737UZJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF706VAZ 52820 ENCODE Processing Pipeline 03d086121cebc5a68f885c2a1507d751 https://www.encodeproject.org/files/ENCFF737UZJ/@@download/ENCFF737UZJ.bed.gz mm10 released low read depth, mild to moderate bottlenecking ENCFF228VQE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF737UZJ 142182 ENCODE Processing Pipeline e62ab177430abb7fc431dc4630081ca1 https://www.encodeproject.org/files/ENCFF228VQE/@@download/ENCFF228VQE.bigBed mm10 released low read depth, mild to moderate bottlenecking ENCFF001IDF bigBed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUU 625115 Barbara Wold, Caltech 0e42f7f0df8297945b42d45849201e23 https://www.encodeproject.org/files/ENCFF001IDF/@@download/ENCFF001IDF.bigBed mm9 released insufficient read depth, insufficient read length ENCFF001IDG fastq reads ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 306507691 Barbara Wold, Caltech 14e46768a62b3240f119f0a39b507f1e https://www.encodeproject.org/files/ENCFF001IDG/@@download/ENCFF001IDG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length ENCFF001IDH fastq reads ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 537117380 Barbara Wold, Caltech 01e97f13c88fb2348614682669c809b8 https://www.encodeproject.org/files/ENCFF001IDH/@@download/ENCFF001IDH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length ENCFF001IDI bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IDG, ENCFF001IDH 896303608 Barbara Wold, Caltech b97e110b6ce6d0d281d395cd29a6bf56 https://www.encodeproject.org/files/ENCFF001IDI/@@download/ENCFF001IDI.bam mm9 released insufficient read depth, insufficient read length ENCFF001IDJ bigWig signal ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDI 63720782 Barbara Wold, Caltech 0df785303d434c54466a44b83be52712 https://www.encodeproject.org/files/ENCFF001IDJ/@@download/ENCFF001IDJ.bigWig mm9 released insufficient read depth, insufficient read length ENCFF001XUU bed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDI 343593 Barbara Wold, Caltech b619c5288c7a48425dac7e4137936d89 https://www.encodeproject.org/files/ENCFF001XUU/@@download/ENCFF001XUU.bed.gz mm9 released insufficient read depth, insufficient read length ENCFF576UTL bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 288637574 ENCODE Processing Pipeline 3018c323e485490fe662d3bb143736df https://www.encodeproject.org/files/ENCFF576UTL/@@download/ENCFF576UTL.bam mm10 released insufficient read depth, insufficient read length ENCFF632XYW bam unfiltered alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 934548232 ENCODE Processing Pipeline db4d8998fb34af33a30ea9a47bd037fc https://www.encodeproject.org/files/ENCFF632XYW/@@download/ENCFF632XYW.bam mm10 released insufficient read depth, insufficient read length ENCFF244USU bigWig signal p-value ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 180134964 ENCODE Processing Pipeline 0b2d330b899cfda57bfb06fa2400da07 https://www.encodeproject.org/files/ENCFF244USU/@@download/ENCFF244USU.bigWig mm10 released insufficient read depth, insufficient read length ENCFF583QSM bigWig fold change over control ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 118353761 ENCODE Processing Pipeline aa31c21519cf9a103f0feed981818e13 https://www.encodeproject.org/files/ENCFF583QSM/@@download/ENCFF583QSM.bigWig mm10 released insufficient read depth, insufficient read length ENCFF883OZA bed narrowPeak peaks and background as input for IDR ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 2339221 ENCODE Processing Pipeline 10d541b1f0bf44feaf43c790ea6e7317 https://www.encodeproject.org/files/ENCFF883OZA/@@download/ENCFF883OZA.bed.gz mm10 released insufficient read depth, insufficient read length ENCFF297NKN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF883OZA 267022 ENCODE Processing Pipeline 1803df1e59bc054e0899ee1b332dea86 https://www.encodeproject.org/files/ENCFF297NKN/@@download/ENCFF297NKN.bed.gz mm10 released insufficient read depth, insufficient read length ENCFF838PJT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297NKN 438377 ENCODE Processing Pipeline 729a48c1dc4d5102d42747f50637d513 https://www.encodeproject.org/files/ENCFF838PJT/@@download/ENCFF838PJT.bigBed mm10 released insufficient read depth, insufficient read length ENCFF196FBN bigBed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF883OZA 4799767 ENCODE Processing Pipeline 2037167bca90f145ca842db6078b0100 https://www.encodeproject.org/files/ENCFF196FBN/@@download/ENCFF196FBN.bigBed mm10 released insufficient read depth, insufficient read length ENCFF001IHH bigBed narrowPeak peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVH 907443 Barbara Wold, Caltech 952270aeac27d799498babaaca95d4de https://www.encodeproject.org/files/ENCFF001IHH/@@download/ENCFF001IHH.bigBed mm9 released mild to moderate bottlenecking insufficient read length ENCFF001IHI fastq reads ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 1049096703 Barbara Wold, Caltech 846dcb76a1d781ff969c46df0491c37c https://www.encodeproject.org/files/ENCFF001IHI/@@download/ENCFF001IHI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking insufficient read length ENCFF001IHJ fastq reads ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 714543991 Barbara Wold, Caltech 23fed2b339daaaaca52c7f1657c63ba5 https://www.encodeproject.org/files/ENCFF001IHJ/@@download/ENCFF001IHJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking insufficient read length ENCFF001IHK bigWig signal ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHL 184235213 Barbara Wold, Caltech 15c440d35c4bf7168d6232aa955d9fba https://www.encodeproject.org/files/ENCFF001IHK/@@download/ENCFF001IHK.bigWig mm9 released mild to moderate bottlenecking insufficient read length ENCFF001IHL bam alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHI, ENCFF001IHJ 1921369176 Barbara Wold, Caltech adb256dbb18cb4973863ae2528089b59 https://www.encodeproject.org/files/ENCFF001IHL/@@download/ENCFF001IHL.bam mm9 released mild to moderate bottlenecking insufficient read length ENCFF001XVH bed narrowPeak peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHL 485393 Barbara Wold, Caltech 8044f4d9aa21deaafa12e3289b98952f https://www.encodeproject.org/files/ENCFF001XVH/@@download/ENCFF001XVH.bed.gz mm9 released mild to moderate bottlenecking insufficient read length ENCFF622PRZ bam unfiltered alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHI, ENCFF001IHJ, ENCFF018NEO 2013458289 ENCODE Processing Pipeline d1696720deca6df6e1fad7076fa86c0f https://www.encodeproject.org/files/ENCFF622PRZ/@@download/ENCFF622PRZ.bam mm10 released mild to moderate bottlenecking insufficient read length ENCFF770ANH bam alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHI, ENCFF001IHJ, ENCFF018NEO 928256450 ENCODE Processing Pipeline 9c0dda646d1252e82b42c5570e0f20e4 https://www.encodeproject.org/files/ENCFF770ANH/@@download/ENCFF770ANH.bam mm10 released mild to moderate bottlenecking insufficient read length ENCFF779WLW bigWig fold change over control ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF770ANH 353354916 ENCODE Processing Pipeline 773d4df16f5cfb1245bd8709dfcf5f90 https://www.encodeproject.org/files/ENCFF779WLW/@@download/ENCFF779WLW.bigWig mm10 released mild to moderate bottlenecking insufficient read length ENCFF658VXK bigWig signal p-value ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF770ANH 371085238 ENCODE Processing Pipeline f109e799943e19e73e127a35ecae240a https://www.encodeproject.org/files/ENCFF658VXK/@@download/ENCFF658VXK.bigWig mm10 released mild to moderate bottlenecking insufficient read length ENCFF917XHU bed narrowPeak peaks and background as input for IDR ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF770ANH 5594775 ENCODE Processing Pipeline 61654e7f20f64994a21114e9931be74d https://www.encodeproject.org/files/ENCFF917XHU/@@download/ENCFF917XHU.bed.gz mm10 released mild to moderate bottlenecking insufficient read length ENCFF103RLC bigBed narrowPeak peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF917XHU 10804240 ENCODE Processing Pipeline eca5183b17b02bfde1933a3145577794 https://www.encodeproject.org/files/ENCFF103RLC/@@download/ENCFF103RLC.bigBed mm10 released mild to moderate bottlenecking insufficient read length ENCFF937RNY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF153VDE 1523008 ENCODE Processing Pipeline b7df4389681df914f7b27167bba252d6 https://www.encodeproject.org/files/ENCFF937RNY/@@download/ENCFF937RNY.bigBed mm10 released mild to moderate bottlenecking insufficient read length ENCFF153VDE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF917XHU 799927 ENCODE Processing Pipeline 95ed98ca05ef984ff639c8a7ae37a839 https://www.encodeproject.org/files/ENCFF153VDE/@@download/ENCFF153VDE.bed.gz mm10 released mild to moderate bottlenecking insufficient read length ENCFF001MPR bam alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQR 1843549690 Ross Hardison, PennState e8f29055d088afc72b991e4758e0abe4 https://www.encodeproject.org/files/ENCFF001MPR/@@download/ENCFF001MPR.bam mm9 released low read length, inconsistent platforms ENCFF001MQK bigBed broadPeak peaks ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFO 297087 Ross Hardison, PennState 66b385d7fda0702674cf376c89780703 https://www.encodeproject.org/files/ENCFF001MQK/@@download/ENCFF001MQK.bigBed mm9 released low read length, inconsistent platforms ENCFF001MQM bigWig signal ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4586347966 Ross Hardison, PennState 7d8d41017e2d7868a2af83435bdc93a9 https://www.encodeproject.org/files/ENCFF001MQM/@@download/ENCFF001MQM.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MQR fastq reads ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1472002883 Ross Hardison, PennState f8f115092c5f367f9261389344989732 https://www.encodeproject.org/files/ENCFF001MQR/@@download/ENCFF001MQR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MRP/ released low read length, inconsistent control read length, inconsistent platforms ENCFF001YFO bed broadPeak peaks ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 143573 Ross Hardison, PennState e297d618ea71a8258a62d08acfb9d0d8 https://www.encodeproject.org/files/ENCFF001YFO/@@download/ENCFF001YFO.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF705AKL bam unfiltered alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQR, ENCFF018NEO 1933074702 ENCODE Processing Pipeline f9dbe4e7b635044ecc12deb97d3afb95 https://www.encodeproject.org/files/ENCFF705AKL/@@download/ENCFF705AKL.bam mm10 released low read length, inconsistent platforms ENCFF145AOI bam alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQR, ENCFF018NEO 1360581536 ENCODE Processing Pipeline 1903b1ffa1304578f62c8a4086cba780 https://www.encodeproject.org/files/ENCFF145AOI/@@download/ENCFF145AOI.bam mm10 released low read length, inconsistent platforms ENCFF001LJE bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJH 340540413 Bing Ren, UCSD 67905f0989ca2b7c3294f29dd4243d4f https://www.encodeproject.org/files/ENCFF001LJE/@@download/ENCFF001LJE.bam mm9 archived low read length, borderline replicate concordance insufficient read depth ENCFF001LJG bigBed broadPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE ENCFF001YAE 245837 Bing Ren, UCSD 30ac5de0040e6ead084de86b1b7e16e7 https://www.encodeproject.org/files/ENCFF001LJG/@@download/ENCFF001LJG.bigBed mm9 archived low read length, borderline replicate concordance insufficient read depth ENCFF001LJH fasta reads ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 249052523 Bing Ren, UCSD 2ea18be19733a5f5713ede6c88ab52fe https://www.encodeproject.org/files/ENCFF001LJH/@@download/ENCFF001LJH.fasta.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length, borderline replicate concordance insufficient read depth ENCFF001LJI bigWig signal ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 76951994 Bing Ren, UCSD a294a68a4cc6834752848f3a35d6a3e8 https://www.encodeproject.org/files/ENCFF001LJI/@@download/ENCFF001LJI.bigWig mm9 archived low read length, borderline replicate concordance missing derived_from insufficient read depth ENCFF001LJJ bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJQ 720050509 Bing Ren, UCSD d2f147b0b8344dfe916a956401b5f3f9 https://www.encodeproject.org/files/ENCFF001LJJ/@@download/ENCFF001LJJ.bam mm9 archived low read length, borderline replicate concordance insufficient read depth ENCFF001LJQ fastq reads ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 822306699 Bing Ren, UCSD b00a97de03447952720798bede9cc04a https://www.encodeproject.org/files/ENCFF001LJQ/@@download/ENCFF001LJQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length, borderline replicate concordance insufficient read depth ENCFF001YAE bed broadPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 130748 Bing Ren, UCSD 7ae7fe4bf0dc0dd6b711537836498598 https://www.encodeproject.org/files/ENCFF001YAE/@@download/ENCFF001YAE.bed.gz mm9 archived low read length, borderline replicate concordance missing derived_from insufficient read depth ENCFF742VYE bam unfiltered alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJH, ENCFF018NEO 396299263 ENCODE Processing Pipeline 18e815a32b80ac9e0db782d37dc29e45 https://www.encodeproject.org/files/ENCFF742VYE/@@download/ENCFF742VYE.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF836UNU bam unfiltered alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJQ, ENCFF018NEO 893386888 ENCODE Processing Pipeline 5baccb8906f2f3777cfe99d6039d3417 https://www.encodeproject.org/files/ENCFF836UNU/@@download/ENCFF836UNU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF293JBU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJH, ENCFF018NEO 163556066 ENCODE Processing Pipeline 8fb31befa0c23d19c7365bb89c34b322 https://www.encodeproject.org/files/ENCFF293JBU/@@download/ENCFF293JBU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF129EIU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJQ, ENCFF018NEO 435974478 ENCODE Processing Pipeline 3de61622b63827f88f2ea2a60a2860bf https://www.encodeproject.org/files/ENCFF129EIU/@@download/ENCFF129EIU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF169GJM bigWig signal p-value ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 331502876 ENCODE Processing Pipeline 059775478177f64075e152ab33f402b0 https://www.encodeproject.org/files/ENCFF169GJM/@@download/ENCFF169GJM.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF893WZX bigWig signal p-value ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF129EIU, ENCFF439WCI, ENCFF683TKC 399033580 ENCODE Processing Pipeline 7b1fb7e9da63f06bcb30aa01ad2b1500 https://www.encodeproject.org/files/ENCFF893WZX/@@download/ENCFF893WZX.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF928LDR bigWig signal p-value ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF129EIU, ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 382174371 ENCODE Processing Pipeline 744ed365e302943e0b046946e65e3bb2 https://www.encodeproject.org/files/ENCFF928LDR/@@download/ENCFF928LDR.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF688FUL bigWig fold change over control ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 144458824 ENCODE Processing Pipeline d796322f01c01c0850d6ed707448498a https://www.encodeproject.org/files/ENCFF688FUL/@@download/ENCFF688FUL.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF978UAI bigWig fold change over control ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF129EIU, ENCFF439WCI, ENCFF683TKC 237414063 ENCODE Processing Pipeline e62edd28a8e709d74f6562a04579ee4c https://www.encodeproject.org/files/ENCFF978UAI/@@download/ENCFF978UAI.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF040HIS bigWig fold change over control ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF129EIU, ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 330775868 ENCODE Processing Pipeline d25c59b44578de5d54ea7a52dad7e66b https://www.encodeproject.org/files/ENCFF040HIS/@@download/ENCFF040HIS.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF601PHQ bed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 2253871 ENCODE Processing Pipeline e51fc64100e755cff5e2c605b5e9c301 https://www.encodeproject.org/files/ENCFF601PHQ/@@download/ENCFF601PHQ.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF356JZY bed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF129EIU, ENCFF439WCI, ENCFF683TKC 2886383 ENCODE Processing Pipeline df063a137e2143b28babfd38475bca0d https://www.encodeproject.org/files/ENCFF356JZY/@@download/ENCFF356JZY.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF899LLH bed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF129EIU, ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 793570 ENCODE Processing Pipeline 99945695fbe2d72ce40ef97c542632c1 https://www.encodeproject.org/files/ENCFF899LLH/@@download/ENCFF899LLH.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF132LYT bigBed narrowPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF601PHQ 4620032 ENCODE Processing Pipeline 745806fa1a5e97b902a1934af221ed72 https://www.encodeproject.org/files/ENCFF132LYT/@@download/ENCFF132LYT.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF384KYY bigBed narrowPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF356JZY 6724393 ENCODE Processing Pipeline b99074ff930eaf57f1db45ac52b8d322 https://www.encodeproject.org/files/ENCFF384KYY/@@download/ENCFF384KYY.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF100KMJ bigBed narrowPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF899LLH 1711102 ENCODE Processing Pipeline 6b669dcd89d3f5d7c7bd20539a73f0f9 https://www.encodeproject.org/files/ENCFF100KMJ/@@download/ENCFF100KMJ.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF333VYC bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF860MNF 182470 ENCODE Processing Pipeline 359cb468a8473e48050fffa74356fd4c https://www.encodeproject.org/files/ENCFF333VYC/@@download/ENCFF333VYC.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF860MNF bed narrowPeak conservative idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF356JZY, ENCFF547MET, ENCFF601PHQ, ENCFF899LLH 83378 ENCODE Processing Pipeline 70f3d01d9630418d612e552d77f89465 https://www.encodeproject.org/files/ENCFF860MNF/@@download/ENCFF860MNF.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF041IHJ bed narrowPeak optimal idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF356JZY, ENCFF547MET, ENCFF601PHQ, ENCFF899LLH 153885 ENCODE Processing Pipeline b92f3c2366b4b8b8419599a973f65253 https://www.encodeproject.org/files/ENCFF041IHJ/@@download/ENCFF041IHJ.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF481FZO bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF041IHJ 332872 ENCODE Processing Pipeline 42b9a193c3e64fd24c3bb8a85d6d3182 https://www.encodeproject.org/files/ENCFF481FZO/@@download/ENCFF481FZO.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF001MOW bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MOZ 829407021 Ross Hardison, PennState 58040ef0e8ffe759853a9c12d65079c4 https://www.encodeproject.org/files/ENCFF001MOW/@@download/ENCFF001MOW.bam mm9 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MOX bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MPE 896720299 Ross Hardison, PennState 2d13c2efc363be94c686c560c7d93178 https://www.encodeproject.org/files/ENCFF001MOX/@@download/ENCFF001MOX.bam mm9 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MOY bigBed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFD 714620 Ross Hardison, PennState 25a83e0de0050c40140f026af413cafc https://www.encodeproject.org/files/ENCFF001MOY/@@download/ENCFF001MOY.bigBed mm9 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MOZ fastq reads ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 656384502 Ross Hardison, PennState bfb161fce38c72de2613b2fbb270215a https://www.encodeproject.org/files/ENCFF001MOZ/@@download/ENCFF001MOZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MPA bigBed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFE 1706252 Ross Hardison, PennState 8df6f1f72008831d7f830476fbc5c40d https://www.encodeproject.org/files/ENCFF001MPA/@@download/ENCFF001MPA.bigBed mm9 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MPB bigBed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFF 520211 Ross Hardison, PennState 0a6307aafe12baf8e9c227a9504a4339 https://www.encodeproject.org/files/ENCFF001MPB/@@download/ENCFF001MPB.bigBed mm9 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MPC bigWig signal ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2317699789 Ross Hardison, PennState 122acd32cb5f5d704bcf587189ea2fca https://www.encodeproject.org/files/ENCFF001MPC/@@download/ENCFF001MPC.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001MPD bigWig signal ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2789862133 Ross Hardison, PennState 7678396218ca6d5703d4a1e5d2de22e9 https://www.encodeproject.org/files/ENCFF001MPD/@@download/ENCFF001MPD.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001MPE fastq reads ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 756936913 Ross Hardison, PennState b775d7cede438636de04c28dd1105d5b https://www.encodeproject.org/files/ENCFF001MPE/@@download/ENCFF001MPE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released low read length, low read depth, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MPF bigWig signal ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 4388332479 Ross Hardison, PennState b38ba86773f35c42810db72c095ef328 https://www.encodeproject.org/files/ENCFF001MPF/@@download/ENCFF001MPF.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001YFD bed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 435407 Ross Hardison, PennState 5d1618a7703ec902942e8c2e6ed73677 https://www.encodeproject.org/files/ENCFF001YFD/@@download/ENCFF001YFD.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001YFE bed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1112507 Ross Hardison, PennState d1aee42fbf4876a5afabb5c3ae428057 https://www.encodeproject.org/files/ENCFF001YFE/@@download/ENCFF001YFE.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001YFF bed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 215721 Ross Hardison, PennState cd17516a819ef7f30b2e7cf12693fb68 https://www.encodeproject.org/files/ENCFF001YFF/@@download/ENCFF001YFF.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF309UTY bam unfiltered alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPE, ENCFF018NEO 957575364 ENCODE Processing Pipeline 244b3c9d5c33c8b6750d881826e7a439 https://www.encodeproject.org/files/ENCFF309UTY/@@download/ENCFF309UTY.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF838GTP bam unfiltered alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOZ, ENCFF018NEO 867666146 ENCODE Processing Pipeline acb9c8ecde15c72982d9e26cf780ad7a https://www.encodeproject.org/files/ENCFF838GTP/@@download/ENCFF838GTP.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF489IXK bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPE, ENCFF018NEO 683706521 ENCODE Processing Pipeline ff41985420ab1869a31e5b154555ca56 https://www.encodeproject.org/files/ENCFF489IXK/@@download/ENCFF489IXK.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF629YOP bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOZ, ENCFF018NEO 602674955 ENCODE Processing Pipeline 0cf452b42775ff1ef5840b8659d56602 https://www.encodeproject.org/files/ENCFF629YOP/@@download/ENCFF629YOP.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF551YBY bigWig signal p-value ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF629YOP, ENCFF984QUA 816732980 ENCODE Processing Pipeline 30d51f8fe00e96a79b0d0e47525c181d https://www.encodeproject.org/files/ENCFF551YBY/@@download/ENCFF551YBY.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF316ALF bigWig signal p-value ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF489IXK, ENCFF984QUA 853739979 ENCODE Processing Pipeline 4769e99265c45c8246f6f5fdbe19bcae https://www.encodeproject.org/files/ENCFF316ALF/@@download/ENCFF316ALF.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF425FZT bigWig fold change over control ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF629YOP, ENCFF984QUA 560029191 ENCODE Processing Pipeline cbb43101211ef26006ce84d35b1172c7 https://www.encodeproject.org/files/ENCFF425FZT/@@download/ENCFF425FZT.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF561RBC bigWig fold change over control ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF489IXK, ENCFF629YOP, ENCFF984QUA 991012850 ENCODE Processing Pipeline 1946a0e0a532fdb29c2dfe539076fa1a https://www.encodeproject.org/files/ENCFF561RBC/@@download/ENCFF561RBC.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF053QAT bigWig fold change over control ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF489IXK, ENCFF984QUA 687863077 ENCODE Processing Pipeline 2949389041d27875328668a7c9bba2f8 https://www.encodeproject.org/files/ENCFF053QAT/@@download/ENCFF053QAT.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF369HHX bigWig signal p-value ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF489IXK, ENCFF629YOP, ENCFF984QUA 968515618 ENCODE Processing Pipeline 54978dfb720a4a5dbb6267fdecdd1c02 https://www.encodeproject.org/files/ENCFF369HHX/@@download/ENCFF369HHX.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF503DPU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF146QJC 131927 ENCODE Processing Pipeline 04669896176d13edae1b8c4993e3d8c4 https://www.encodeproject.org/files/ENCFF503DPU/@@download/ENCFF503DPU.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF835XEQ bed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF629YOP, ENCFF984QUA 6365795 ENCODE Processing Pipeline 37ea75ff9255eea15b095dcfd1c653a7 https://www.encodeproject.org/files/ENCFF835XEQ/@@download/ENCFF835XEQ.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF734UDF bigBed narrowPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF517GSF 12531127 ENCODE Processing Pipeline 4cc6ae4ac7d571b0874e8bdfc54337cb https://www.encodeproject.org/files/ENCFF734UDF/@@download/ENCFF734UDF.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF146QJC bed narrowPeak conservative idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF380TVB, ENCFF517GSF, ENCFF547MET, ENCFF835XEQ 18022 ENCODE Processing Pipeline 23cd7cf8ef173ed201428984bfad7158 https://www.encodeproject.org/files/ENCFF146QJC/@@download/ENCFF146QJC.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF380TVB bed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF489IXK, ENCFF629YOP, ENCFF984QUA 7090907 ENCODE Processing Pipeline 3015c24b7cb6def68d3df178051f785a https://www.encodeproject.org/files/ENCFF380TVB/@@download/ENCFF380TVB.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF144QXM bigBed narrowPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF835XEQ 12245721 ENCODE Processing Pipeline fc59301bdbcd4ef69bd67074df7e9ba2 https://www.encodeproject.org/files/ENCFF144QXM/@@download/ENCFF144QXM.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF517GSF bed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF489IXK, ENCFF984QUA 6995060 ENCODE Processing Pipeline 2be00a5d3452552c8878eb0437812154 https://www.encodeproject.org/files/ENCFF517GSF/@@download/ENCFF517GSF.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF853HEV bigBed narrowPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF380TVB 12601694 ENCODE Processing Pipeline 5d4a883056c38d55f5e936fe1e533c9e https://www.encodeproject.org/files/ENCFF853HEV/@@download/ENCFF853HEV.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF495VWK bed narrowPeak optimal idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF380TVB, ENCFF517GSF, ENCFF547MET, ENCFF835XEQ 61626 ENCODE Processing Pipeline 05cee7428b0ab274f03608505df72b30 https://www.encodeproject.org/files/ENCFF495VWK/@@download/ENCFF495VWK.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF811GWR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF495VWK 215904 ENCODE Processing Pipeline 120889be834abab8ba3c244de8dd913c https://www.encodeproject.org/files/ENCFF811GWR/@@download/ENCFF811GWR.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample insufficient replicate concordance ENCFF001MUA bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MUJ 1666320429 Ross Hardison, PennState 167d1a00b98d9b8e6cb09bca8ac08256 https://www.encodeproject.org/files/ENCFF001MUA/@@download/ENCFF001MUA.bam mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUB bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF001MUM 2605680219 Ross Hardison, PennState c045f4508e9b3a92889887d6f56f8552 https://www.encodeproject.org/files/ENCFF001MUB/@@download/ENCFF001MUB.bam mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUD bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGJ 207098 Ross Hardison, PennState f71415ee2617723ec95433998f08ebe7 https://www.encodeproject.org/files/ENCFF001MUD/@@download/ENCFF001MUD.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUE bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MUP 5172747994 Ross Hardison, PennState 943093266d20b8e64f0e74a41a8f09fd https://www.encodeproject.org/files/ENCFF001MUE/@@download/ENCFF001MUE.bam mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUF bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGK 193928 Ross Hardison, PennState defe7c0ef42ce987abcf8ffbaf8a8396 https://www.encodeproject.org/files/ENCFF001MUF/@@download/ENCFF001MUF.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUG bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGL 274202 Ross Hardison, PennState d5242feaa499d5ce794a973ba58e7660 https://www.encodeproject.org/files/ENCFF001MUG/@@download/ENCFF001MUG.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUH bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 ENCFF001YGM 80492 Ross Hardison, PennState 160ffea96cd3d85f49b2a5313d475906 https://www.encodeproject.org/files/ENCFF001MUH/@@download/ENCFF001MUH.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUI bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 3242379942 Ross Hardison, PennState 187dee205c417543cf50e8d2468b233a https://www.encodeproject.org/files/ENCFF001MUI/@@download/ENCFF001MUI.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MUJ fastq reads ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1332709847 Ross Hardison, PennState 8f3fba6741cb9ec4940bc041c6a66a89 https://www.encodeproject.org/files/ENCFF001MUJ/@@download/ENCFF001MUJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MUT/ released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MUK bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5140287333 Ross Hardison, PennState 7d826ee50d8978afec0c44777a348df7 https://www.encodeproject.org/files/ENCFF001MUK/@@download/ENCFF001MUK.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MUL bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 3297152082 Ross Hardison, PennState e7c0cc440ced9256e57133d3591dc5cd https://www.encodeproject.org/files/ENCFF001MUL/@@download/ENCFF001MUL.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MUM fastq reads ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 45 single-ended 2132036352 Ross Hardison, PennState 3a75f406f665c722d94b844fe066015d https://www.encodeproject.org/files/ENCFF001MUM/@@download/ENCFF001MUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001MUO bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 5756066636 Ross Hardison, PennState 3ea8cb21860c568f58aae39336d13163 https://www.encodeproject.org/files/ENCFF001MUO/@@download/ENCFF001MUO.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MUP fastq reads ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 4519972158 Ross Hardison, PennState 633085f27acbb716c4629dd093383aac https://www.encodeproject.org/files/ENCFF001MUP/@@download/ENCFF001MUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001YGJ bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 92230 Ross Hardison, PennState 927f35850aa29214979ad808c93b5239 https://www.encodeproject.org/files/ENCFF001YGJ/@@download/ENCFF001YGJ.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGK bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 86347 Ross Hardison, PennState 5fafb711ee5608de50da78a858cde800 https://www.encodeproject.org/files/ENCFF001YGK/@@download/ENCFF001YGK.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGL bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 155951 Ross Hardison, PennState 071833a24933da62dad6a33728bbebd7 https://www.encodeproject.org/files/ENCFF001YGL/@@download/ENCFF001YGL.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YGM bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 22074 Ross Hardison, PennState 89d33336c5739f474e80d1e20d8ba2dd https://www.encodeproject.org/files/ENCFF001YGM/@@download/ENCFF001YGM.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF065JII bam unfiltered alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUJ, ENCFF018NEO 1760451903 ENCODE Processing Pipeline 77261495d33c1acb24522163161986f6 https://www.encodeproject.org/files/ENCFF065JII/@@download/ENCFF065JII.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF291XKM bam unfiltered alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUP, ENCFF018NEO 4523836477 ENCODE Processing Pipeline d9121d4a6626c44f9c41710806ee7634 https://www.encodeproject.org/files/ENCFF291XKM/@@download/ENCFF291XKM.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF313MIR bam unfiltered alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MUM, ENCFF018NEO 2597902706 ENCODE Processing Pipeline 6288d43fe9368e33bcf4bb5e9db62fb6 https://www.encodeproject.org/files/ENCFF313MIR/@@download/ENCFF313MIR.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF867QFT bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUJ, ENCFF018NEO 1218916952 ENCODE Processing Pipeline 9f544979cfd21ed50ecdc9ac1155cc22 https://www.encodeproject.org/files/ENCFF867QFT/@@download/ENCFF867QFT.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF994AUU bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MUM, ENCFF018NEO 1800337837 ENCODE Processing Pipeline 5cefe335e455c038ebb4841fe7cca782 https://www.encodeproject.org/files/ENCFF994AUU/@@download/ENCFF994AUU.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF364NET bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUP, ENCFF018NEO 2906150930 ENCODE Processing Pipeline ba2e07620ea0e634c7cf762d9fa780b8 https://www.encodeproject.org/files/ENCFF364NET/@@download/ENCFF364NET.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MSA bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSD 587508450 Ross Hardison, PennState 94d5cb3600298b460a27061ef222c300 https://www.encodeproject.org/files/ENCFF001MSA/@@download/ENCFF001MSA.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSB bigBed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFV 371747 Ross Hardison, PennState be007a2298a65be9b4d5640d5d09606f https://www.encodeproject.org/files/ENCFF001MSB/@@download/ENCFF001MSB.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSC bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSI 694335076 Ross Hardison, PennState 09b582042b7e999c0813dc43b2059301 https://www.encodeproject.org/files/ENCFF001MSC/@@download/ENCFF001MSC.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSD fastq reads ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 448992400 Ross Hardison, PennState 5e66b53545c7066dda46d73a62b52f24 https://www.encodeproject.org/files/ENCFF001MSD/@@download/ENCFF001MSD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSE bigBed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFW 305280 Ross Hardison, PennState a1c2b2b7d0a9b8353f704fc88812965f https://www.encodeproject.org/files/ENCFF001MSE/@@download/ENCFF001MSE.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSF bigBed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFX 123188 Ross Hardison, PennState 753dd16bb3d1598d7fcae9240388c8b5 https://www.encodeproject.org/files/ENCFF001MSF/@@download/ENCFF001MSF.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSG bigWig signal ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 920595771 Ross Hardison, PennState 6c20c6a672f2199cb0c6261fcf4758da https://www.encodeproject.org/files/ENCFF001MSG/@@download/ENCFF001MSG.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSH bigWig signal ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1312348386 Ross Hardison, PennState 0d2f614c8308a8afb192c85a6a3c5d47 https://www.encodeproject.org/files/ENCFF001MSH/@@download/ENCFF001MSH.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSI fastq reads ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 595263632 Ross Hardison, PennState bbc6f0394807ff7cd0f014e61f943a9f https://www.encodeproject.org/files/ENCFF001MSI/@@download/ENCFF001MSI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSJ bigWig signal ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2002056726 Ross Hardison, PennState 5e83ad635cd1afbbd8727aec488e7a6c https://www.encodeproject.org/files/ENCFF001MSJ/@@download/ENCFF001MSJ.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001YFV bed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 203655 Ross Hardison, PennState 1cfadc123ec2dd4a1fbbee6931e68162 https://www.encodeproject.org/files/ENCFF001YFV/@@download/ENCFF001YFV.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001YFW bed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 139614 Ross Hardison, PennState b3dfdc8df544dcd0588a63fe2b93e985 https://www.encodeproject.org/files/ENCFF001YFW/@@download/ENCFF001YFW.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001YFX bed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 51154 Ross Hardison, PennState 18c464a0a94c1a1f85df08aa1554901b https://www.encodeproject.org/files/ENCFF001YFX/@@download/ENCFF001YFX.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF498PQX bam unfiltered alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSD, ENCFF018NEO 620143839 ENCODE Processing Pipeline 00db65c3d5f439b56b515f532a58ec12 https://www.encodeproject.org/files/ENCFF498PQX/@@download/ENCFF498PQX.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF994MOB bam unfiltered alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSI, ENCFF018NEO 731605909 ENCODE Processing Pipeline 3908695768484ef7c2571d0cc29b0f3c https://www.encodeproject.org/files/ENCFF994MOB/@@download/ENCFF994MOB.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF241CAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSI, ENCFF018NEO 488592776 ENCODE Processing Pipeline 57d8cf856774ce53024ab4c7cb8f9d85 https://www.encodeproject.org/files/ENCFF241CAL/@@download/ENCFF241CAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF877FAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSD, ENCFF018NEO 448035213 ENCODE Processing Pipeline fa4de8a1b7ea0c211b98c2587dc53a7c https://www.encodeproject.org/files/ENCFF877FAL/@@download/ENCFF877FAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF893QLS bigWig signal p-value ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 785922079 ENCODE Processing Pipeline a2d52e45b91fce90c223f5d1e9b7350d https://www.encodeproject.org/files/ENCFF893QLS/@@download/ENCFF893QLS.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF741KMP bigWig signal p-value ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI 908809339 ENCODE Processing Pipeline 956b1469c525d5fd2e49916f44c3cd9b https://www.encodeproject.org/files/ENCFF741KMP/@@download/ENCFF741KMP.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF251VYZ bigWig fold change over control ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI 456676785 ENCODE Processing Pipeline eaa68766da6769a89eb160cc485fe7de https://www.encodeproject.org/files/ENCFF251VYZ/@@download/ENCFF251VYZ.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF800RBP bed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 5650745 ENCODE Processing Pipeline f13976b40a48278a519e726cc8c66e36 https://www.encodeproject.org/files/ENCFF800RBP/@@download/ENCFF800RBP.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF269ZXS bed narrowPeak conservative idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF265CLS, ENCFF547MET, ENCFF800RBP, ENCFF936PNG 1142 ENCODE Processing Pipeline 5b51c546aa88018c712b9c54bd48e678 https://www.encodeproject.org/files/ENCFF269ZXS/@@download/ENCFF269ZXS.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF630WCU bigWig signal p-value ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 860386486 ENCODE Processing Pipeline 462e18a4950ee162ca96b6409431d080 https://www.encodeproject.org/files/ENCFF630WCU/@@download/ENCFF630WCU.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF367IMF bigWig fold change over control ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 738497551 ENCODE Processing Pipeline 962c94dbadf85966d29af5d04eebf353 https://www.encodeproject.org/files/ENCFF367IMF/@@download/ENCFF367IMF.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF358DPQ bigWig fold change over control ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 463500617 ENCODE Processing Pipeline 93edb1e499af9f81596d611672c10903 https://www.encodeproject.org/files/ENCFF358DPQ/@@download/ENCFF358DPQ.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF399ENJ bigBed narrowPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF936PNG 11009600 ENCODE Processing Pipeline d55c5bfa9532da6bb33bde1332add9ba https://www.encodeproject.org/files/ENCFF399ENJ/@@download/ENCFF399ENJ.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF843OEI bigBed narrowPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF265CLS 10265752 ENCODE Processing Pipeline bf5a3b8d33c6f375470e45b67a266548 https://www.encodeproject.org/files/ENCFF843OEI/@@download/ENCFF843OEI.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF265CLS bed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI 4693469 ENCODE Processing Pipeline 08c019b8c4f8466dbc1dcbab05db3ba1 https://www.encodeproject.org/files/ENCFF265CLS/@@download/ENCFF265CLS.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF930CBF bigBed narrowPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF800RBP 10652144 ENCODE Processing Pipeline 01566b2ac35a6a498a2438e532892f21 https://www.encodeproject.org/files/ENCFF930CBF/@@download/ENCFF930CBF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF936PNG bed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 5241205 ENCODE Processing Pipeline 9768756294034f956a02aae587219ff2 https://www.encodeproject.org/files/ENCFF936PNG/@@download/ENCFF936PNG.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF561IKF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF565YYF 53961 ENCODE Processing Pipeline 10fc0f1f617023cbf12df65360ef0031 https://www.encodeproject.org/files/ENCFF561IKF/@@download/ENCFF561IKF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF075GOF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF269ZXS 70029 ENCODE Processing Pipeline 2842462d85a5792188507a767979ca44 https://www.encodeproject.org/files/ENCFF075GOF/@@download/ENCFF075GOF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF565YYF bed narrowPeak optimal idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF265CLS, ENCFF547MET, ENCFF800RBP, ENCFF936PNG 6171 ENCODE Processing Pipeline 06efade9a272737e19815745652f0097 https://www.encodeproject.org/files/ENCFF565YYF/@@download/ENCFF565YYF.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001NLQ bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NNM 433035378 Michael Snyder, Stanford 1500d12ebc543a1777f56a85af43441e https://www.encodeproject.org/files/ENCFF001NLQ/@@download/ENCFF001NLQ.bam mm9 released low read length, low read depth ENCFF001NLR bigBed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIQ 700202 Michael Snyder, Stanford d0d9ca47d59311057a3f90d61c668795 https://www.encodeproject.org/files/ENCFF001NLR/@@download/ENCFF001NLR.bigBed mm9 released low read length, low read depth ENCFF001NLS bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NNF 446690961 Michael Snyder, Stanford 3b9e1e515ed39d4ccdc0739975b4d78c https://www.encodeproject.org/files/ENCFF001NLS/@@download/ENCFF001NLS.bam mm9 released low read length, low read depth ENCFF001NLU bigWig signal ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLQ, ENCFF001NLS 337595108 Michael Snyder, Stanford 1009037f643c66e0af35f11be8b4225a https://www.encodeproject.org/files/ENCFF001NLU/@@download/ENCFF001NLU.bigWig mm9 released low read length, low read depth ENCFF001NNF fastq reads ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1106901097 Michael Snyder, Stanford 3edf8b246c97a17eb6cf2a9a13d36979 https://www.encodeproject.org/files/ENCFF001NNF/@@download/ENCFF001NNF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, low read depth ENCFF001NNM fastq reads ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1614085096 Michael Snyder, Stanford a62d9a6914579ee39df4aea426a2f3d7 https://www.encodeproject.org/files/ENCFF001NNM/@@download/ENCFF001NNM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, low read depth ENCFF001YIQ bed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLQ, ENCFF001NLS 274091 Michael Snyder, Stanford 177aa59b8f7360b0e08770bc727624ed https://www.encodeproject.org/files/ENCFF001YIQ/@@download/ENCFF001YIQ.bed.gz mm9 released low read length, low read depth ENCFF873FFG bam unfiltered alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NNM, ENCFF018NEO 1863164474 ENCODE Processing Pipeline e8bbb7c2ee711f4eb48272a98d91577c https://www.encodeproject.org/files/ENCFF873FFG/@@download/ENCFF873FFG.bam mm10 released low read length, low read depth ENCFF593GIY bam unfiltered alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NNF, ENCFF018NEO 1331261939 ENCODE Processing Pipeline 0bcee08ce0df0576ad69b02edd0d1804 https://www.encodeproject.org/files/ENCFF593GIY/@@download/ENCFF593GIY.bam mm10 released low read length, low read depth ENCFF904LJW bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NNM, ENCFF018NEO 1139177408 ENCODE Processing Pipeline bb74e966b181203375ab8372e4cc6305 https://www.encodeproject.org/files/ENCFF904LJW/@@download/ENCFF904LJW.bam mm10 released low read length, low read depth ENCFF500FVS bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NNF, ENCFF018NEO 834951614 ENCODE Processing Pipeline 3e7d0e4701dce1a1718d12421c288350 https://www.encodeproject.org/files/ENCFF500FVS/@@download/ENCFF500FVS.bam mm10 released low read length, low read depth ENCFF768CJH bigWig signal p-value ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF500FVS, ENCFF528WZN 323770455 ENCODE Processing Pipeline c13511e938f5c183ef81f9ab5a8c19de https://www.encodeproject.org/files/ENCFF768CJH/@@download/ENCFF768CJH.bigWig mm10 released low read length, low read depth ENCFF122ASV bigWig signal p-value ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF904LJW 372615826 ENCODE Processing Pipeline 1ee6a1912a506ffe0a23515aaa03ffa8 https://www.encodeproject.org/files/ENCFF122ASV/@@download/ENCFF122ASV.bigWig mm10 released low read length, low read depth ENCFF073TGE bigWig signal p-value ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500FVS, ENCFF528WZN, ENCFF904LJW 340012994 ENCODE Processing Pipeline 14d5ce4e82990ceb0215fd0244e5342f https://www.encodeproject.org/files/ENCFF073TGE/@@download/ENCFF073TGE.bigWig mm10 released low read length, low read depth ENCFF016SSW bigWig fold change over control ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF904LJW 439498536 ENCODE Processing Pipeline 60399e10e900a4fb31b78dae6b7468be https://www.encodeproject.org/files/ENCFF016SSW/@@download/ENCFF016SSW.bigWig mm10 released low read length, low read depth ENCFF236VEW bigWig fold change over control ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF500FVS, ENCFF528WZN 325056261 ENCODE Processing Pipeline 1ad6f295590f9894d8ba0a1c21f77096 https://www.encodeproject.org/files/ENCFF236VEW/@@download/ENCFF236VEW.bigWig mm10 released low read length, low read depth ENCFF495UJH bigWig fold change over control ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500FVS, ENCFF528WZN, ENCFF904LJW 647799767 ENCODE Processing Pipeline 1ca0e233cae295f24e4b770d4004039d https://www.encodeproject.org/files/ENCFF495UJH/@@download/ENCFF495UJH.bigWig mm10 released low read length, low read depth ENCFF213QTT bed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF904LJW 894224 ENCODE Processing Pipeline cb5fd43b7d88823c74bba75dd4fc6f19 https://www.encodeproject.org/files/ENCFF213QTT/@@download/ENCFF213QTT.bed.gz mm10 released low read length, low read depth ENCFF876DTD bed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF500FVS, ENCFF528WZN 4674211 ENCODE Processing Pipeline 0c66d1a3c66997d165cd790c126bd66e https://www.encodeproject.org/files/ENCFF876DTD/@@download/ENCFF876DTD.bed.gz mm10 released low read length, low read depth ENCFF101GGW bed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500FVS, ENCFF528WZN, ENCFF904LJW 5554617 ENCODE Processing Pipeline 78e62b251356b9777260b9c8dac9a8ab https://www.encodeproject.org/files/ENCFF101GGW/@@download/ENCFF101GGW.bed.gz mm10 released low read length, low read depth ENCFF303MTG bigBed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF213QTT 1845497 ENCODE Processing Pipeline c30842ee75443793205f075a92296236 https://www.encodeproject.org/files/ENCFF303MTG/@@download/ENCFF303MTG.bigBed mm10 released low read length, low read depth ENCFF954CIN bigBed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF876DTD 10695014 ENCODE Processing Pipeline e9ad94571d288fac2410d288fa1781cb https://www.encodeproject.org/files/ENCFF954CIN/@@download/ENCFF954CIN.bigBed mm10 released low read length, low read depth ENCFF224XHF bigBed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF101GGW 10980066 ENCODE Processing Pipeline 5685fa72ceee195424e0ac00e71d6403 https://www.encodeproject.org/files/ENCFF224XHF/@@download/ENCFF224XHF.bigBed mm10 released low read length, low read depth ENCFF766ABJ bed narrowPeak optimal idr thresholded peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF101GGW, ENCFF213QTT, ENCFF547MET, ENCFF876DTD 103085 ENCODE Processing Pipeline e417de34d2464f750ce181ea0eaebf0e https://www.encodeproject.org/files/ENCFF766ABJ/@@download/ENCFF766ABJ.bed.gz mm10 released low read length, low read depth ENCFF478JTX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF766ABJ 217212 ENCODE Processing Pipeline ca0e02cbc22002f93e57daf35b97d6a4 https://www.encodeproject.org/files/ENCFF478JTX/@@download/ENCFF478JTX.bigBed mm10 released low read length, low read depth ENCFF001MNM bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MNP 724870726 Ross Hardison, PennState 1acdd455b9275d5efb04c9d9bf4659cd https://www.encodeproject.org/files/ENCFF001MNM/@@download/ENCFF001MNM.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MNN bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MNV 1398070950 Ross Hardison, PennState 2bf8b94d738e90dd51cdce3a6506a0ca https://www.encodeproject.org/files/ENCFF001MNN/@@download/ENCFF001MNN.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MNO bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEU 535600 Ross Hardison, PennState d8a6c2ae4fd99992124fd20a4546f342 https://www.encodeproject.org/files/ENCFF001MNO/@@download/ENCFF001MNO.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MNP fastq reads ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 564774383 Ross Hardison, PennState 9075ac7bcb26c6ad9c92e5729e27523e https://www.encodeproject.org/files/ENCFF001MNP/@@download/ENCFF001MNP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MNQ bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEV 489627 Ross Hardison, PennState 004294bc1b11c9258fca8bf47f9c73f3 https://www.encodeproject.org/files/ENCFF001MNQ/@@download/ENCFF001MNQ.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MNR bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEX 451668 Ross Hardison, PennState 8025296ca9a9647c37e0f2a64567b4c5 https://www.encodeproject.org/files/ENCFF001MNR/@@download/ENCFF001MNR.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MNS bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2612594502 Ross Hardison, PennState 2558eafa7ae5c20e7d36677504e0dbe3 https://www.encodeproject.org/files/ENCFF001MNS/@@download/ENCFF001MNS.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MNT bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3122548713 Ross Hardison, PennState e9dfbea84a2b9062f231e5d6cdef5efe https://www.encodeproject.org/files/ENCFF001MNT/@@download/ENCFF001MNT.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MNU bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 4052610359 Ross Hardison, PennState e1b5adab26205c4e06fbbbf782798dbb https://www.encodeproject.org/files/ENCFF001MNU/@@download/ENCFF001MNU.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MNV fastq reads ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1107370733 Ross Hardison, PennState cab53378da43a11ab9a3c918927e9a4c https://www.encodeproject.org/files/ENCFF001MNV/@@download/ENCFF001MNV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released low read length, low read depth, mixed read lengths, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001YEU bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 298243 Ross Hardison, PennState aa39700ec32bb13480653ed76d0e4d3e https://www.encodeproject.org/files/ENCFF001YEU/@@download/ENCFF001YEU.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YEV bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 279211 Ross Hardison, PennState 5b60df8e605ee0b72b14ebd9b73c6f67 https://www.encodeproject.org/files/ENCFF001YEV/@@download/ENCFF001YEV.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YEX bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 223217 Ross Hardison, PennState 5b84c91b8d8f0cbe07fe75c5d24c4756 https://www.encodeproject.org/files/ENCFF001YEX/@@download/ENCFF001YEX.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF004XMS bam unfiltered alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 762619367 ENCODE Processing Pipeline 49679af3b5028ddc06597028adb2c7d3 https://www.encodeproject.org/files/ENCFF004XMS/@@download/ENCFF004XMS.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF680QQJ bam unfiltered alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 1349102273 ENCODE Processing Pipeline 4412069931a63a3ab7ad8cda978e62cf https://www.encodeproject.org/files/ENCFF680QQJ/@@download/ENCFF680QQJ.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF553QQS bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 926297627 ENCODE Processing Pipeline 99fa0839ea5c83dd0a5f8266038b7e5d https://www.encodeproject.org/files/ENCFF553QQS/@@download/ENCFF553QQS.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF585RBR bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 534736853 ENCODE Processing Pipeline 1f724a5e005653f6845584d2583c5264 https://www.encodeproject.org/files/ENCFF585RBR/@@download/ENCFF585RBR.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF219QWY bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 738278903 ENCODE Processing Pipeline c741683ff1bd86d0ed9c84eb7581c13d https://www.encodeproject.org/files/ENCFF219QWY/@@download/ENCFF219QWY.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF131LGX bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 866766027 ENCODE Processing Pipeline 3b4450324a5cd10d01b1e630e0fb8080 https://www.encodeproject.org/files/ENCFF131LGX/@@download/ENCFF131LGX.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF669WRO bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 1039215842 ENCODE Processing Pipeline ae3276f1f08768a0e5c875a8a0591a0b https://www.encodeproject.org/files/ENCFF669WRO/@@download/ENCFF669WRO.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF045SCM bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 535137517 ENCODE Processing Pipeline fb02c8b6e6be0086f79a32ff0b037da0 https://www.encodeproject.org/files/ENCFF045SCM/@@download/ENCFF045SCM.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF037HAV bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 813078390 ENCODE Processing Pipeline 0e009b251a0b98bfdb0aa487038591b5 https://www.encodeproject.org/files/ENCFF037HAV/@@download/ENCFF037HAV.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF938UFC bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 1055694366 ENCODE Processing Pipeline a44c773bf4520705876be70c65faf977 https://www.encodeproject.org/files/ENCFF938UFC/@@download/ENCFF938UFC.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF925MJG bed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 5490008 ENCODE Processing Pipeline e5b7d532e299a907a9539ef35b8eb022 https://www.encodeproject.org/files/ENCFF925MJG/@@download/ENCFF925MJG.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF550GOV bigBed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF925MJG 11133799 ENCODE Processing Pipeline 05da7f4a4256caf6021f742649bdc6c6 https://www.encodeproject.org/files/ENCFF550GOV/@@download/ENCFF550GOV.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF740XUP bigBed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF983MKP 11328730 ENCODE Processing Pipeline 19380a2af033a6064b3dcb1302cee65f https://www.encodeproject.org/files/ENCFF740XUP/@@download/ENCFF740XUP.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF477PTQ bigBed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF957QMK 11367508 ENCODE Processing Pipeline 2d94182ea2e89b86a9398205437e5a02 https://www.encodeproject.org/files/ENCFF477PTQ/@@download/ENCFF477PTQ.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF983MKP bed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 5651008 ENCODE Processing Pipeline dd3a6e1640555ed6e2c7ffcfb2790f28 https://www.encodeproject.org/files/ENCFF983MKP/@@download/ENCFF983MKP.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF957QMK bed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 6294733 ENCODE Processing Pipeline 7d1f92e141f865ad7442b7c9e06c900f https://www.encodeproject.org/files/ENCFF957QMK/@@download/ENCFF957QMK.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF856JMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF437CLA 522263 ENCODE Processing Pipeline 8c9b66ac2c8aa0f7e0f6e6f614be2876 https://www.encodeproject.org/files/ENCFF856JMM/@@download/ENCFF856JMM.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF437CLA bed narrowPeak conservative idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF547MET, ENCFF925MJG, ENCFF957QMK, ENCFF983MKP 263884 ENCODE Processing Pipeline 2cccab7ae97ec652dd0c4f3f24c27031 https://www.encodeproject.org/files/ENCFF437CLA/@@download/ENCFF437CLA.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF976DPO bed narrowPeak optimal idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF547MET, ENCFF925MJG, ENCFF957QMK, ENCFF983MKP 272466 ENCODE Processing Pipeline 2853e82cc05b43e058e0d2458deb89a0 https://www.encodeproject.org/files/ENCFF976DPO/@@download/ENCFF976DPO.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF247QFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF976DPO 534927 ENCODE Processing Pipeline 934f49ed770fb6a7dae48c11cf0d69a1 https://www.encodeproject.org/files/ENCFF247QFC/@@download/ENCFF247QFC.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001NRZ bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NSC 405262798 Michael Snyder, Stanford 2a2c5b29cf7cabbb249f43dcc2a9166e https://www.encodeproject.org/files/ENCFF001NRZ/@@download/ENCFF001NRZ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSA bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NSE 442469879 Michael Snyder, Stanford ab05e34ae1cad5f08fc99b14b124f135 https://www.encodeproject.org/files/ENCFF001NSA/@@download/ENCFF001NSA.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSB bigBed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJL 1294743 Michael Snyder, Stanford ae6289b8a427bd1c0c53f9365c0370ff https://www.encodeproject.org/files/ENCFF001NSB/@@download/ENCFF001NSB.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSC fastq reads ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 769527070 Michael Snyder, Stanford d954e3cfeed2db29c854000c359582d7 https://www.encodeproject.org/files/ENCFF001NSC/@@download/ENCFF001NSC.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSE fastq reads ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 841891121 Michael Snyder, Stanford 8e9acde6edbcc61c54223c7226538454 https://www.encodeproject.org/files/ENCFF001NSE/@@download/ENCFF001NSE.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSG bigWig signal ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRZ, ENCFF001NSA 144859369 Michael Snyder, Stanford bb97c894017dcbeb44dbb8c59534548d https://www.encodeproject.org/files/ENCFF001NSG/@@download/ENCFF001NSG.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YJL bed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRZ, ENCFF001NSA 465945 Michael Snyder, Stanford 41fbb59831f62063fc9bd2710d2f6122 https://www.encodeproject.org/files/ENCFF001YJL/@@download/ENCFF001YJL.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF792HBS bam unfiltered alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NSE, ENCFF018NEO 937309704 ENCODE Processing Pipeline e45266ffada18ed2625a4b41e41377fa https://www.encodeproject.org/files/ENCFF792HBS/@@download/ENCFF792HBS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF514YIN bam unfiltered alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NSC, ENCFF018NEO 852314506 ENCODE Processing Pipeline 42ac385ca2c69b7633ac99dc58bc36ad https://www.encodeproject.org/files/ENCFF514YIN/@@download/ENCFF514YIN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF975YHZ bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NSE, ENCFF018NEO 619217855 ENCODE Processing Pipeline e1f1748bdcbf62103b012a64c6acdc4d https://www.encodeproject.org/files/ENCFF975YHZ/@@download/ENCFF975YHZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF884OQV bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NSC, ENCFF018NEO 537380418 ENCODE Processing Pipeline 1eb1a3c6a90683e3ac2841bf113b73aa https://www.encodeproject.org/files/ENCFF884OQV/@@download/ENCFF884OQV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF999OGB bigWig signal p-value ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV 384934558 ENCODE Processing Pipeline 68e707d292b2c9683e6daad86854b522 https://www.encodeproject.org/files/ENCFF999OGB/@@download/ENCFF999OGB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF083LPU bigWig signal p-value ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF975YHZ 402666327 ENCODE Processing Pipeline d4a53897680c5d890efb8f49d300b642 https://www.encodeproject.org/files/ENCFF083LPU/@@download/ENCFF083LPU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF686HPH bigWig signal p-value ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV, ENCFF975YHZ 551574365 ENCODE Processing Pipeline 68c941886d5224f9e4618c3111e0d5f0 https://www.encodeproject.org/files/ENCFF686HPH/@@download/ENCFF686HPH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF625HSN bigWig fold change over control ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV 319445620 ENCODE Processing Pipeline 4f3b20ee044b44f6f5aca14c102ad8df https://www.encodeproject.org/files/ENCFF625HSN/@@download/ENCFF625HSN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF408JMT bigWig fold change over control ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF975YHZ 339312475 ENCODE Processing Pipeline c354a4f11a9f14d67c58c74bd13621fc https://www.encodeproject.org/files/ENCFF408JMT/@@download/ENCFF408JMT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF283VEC bigWig fold change over control ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV, ENCFF975YHZ 540178425 ENCODE Processing Pipeline dc33562506d8d1acf656d7274ecf40f1 https://www.encodeproject.org/files/ENCFF283VEC/@@download/ENCFF283VEC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF170CUA bed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF975YHZ 4900352 ENCODE Processing Pipeline f1ea2e9016009392dd3265cbe3e887d3 https://www.encodeproject.org/files/ENCFF170CUA/@@download/ENCFF170CUA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF439TUB bed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV 4759384 ENCODE Processing Pipeline 5b2cba69190395c14b40ab3ca012bf26 https://www.encodeproject.org/files/ENCFF439TUB/@@download/ENCFF439TUB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF332WUR bed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV, ENCFF975YHZ 5435262 ENCODE Processing Pipeline 796275a5e6e3af2a4bc534e2a0077553 https://www.encodeproject.org/files/ENCFF332WUR/@@download/ENCFF332WUR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF614MIS bigBed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF439TUB 10727252 ENCODE Processing Pipeline e63cb75083050fdbe1f4e048d74544da https://www.encodeproject.org/files/ENCFF614MIS/@@download/ENCFF614MIS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF677YFF bigBed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF170CUA 10806345 ENCODE Processing Pipeline 1b620b627a21a3f9288602183d164316 https://www.encodeproject.org/files/ENCFF677YFF/@@download/ENCFF677YFF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF319CMX bigBed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF332WUR 11285213 ENCODE Processing Pipeline b3b54ac87ab6627d446a81f91fb8ab0d https://www.encodeproject.org/files/ENCFF319CMX/@@download/ENCFF319CMX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF501XGD bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF904QRA 924328 ENCODE Processing Pipeline 2b5a76c8e500d809b092716c7ce265e3 https://www.encodeproject.org/files/ENCFF501XGD/@@download/ENCFF501XGD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF904QRA bed narrowPeak conservative idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF170CUA, ENCFF332WUR, ENCFF439TUB, ENCFF547MET 452446 ENCODE Processing Pipeline 0c63fd9694be7aedb4e236b84b1df76f https://www.encodeproject.org/files/ENCFF904QRA/@@download/ENCFF904QRA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF072ADQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF451ZPC 934167 ENCODE Processing Pipeline e9c4f5ddb57bca54be791b97644c7d24 https://www.encodeproject.org/files/ENCFF072ADQ/@@download/ENCFF072ADQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF451ZPC bed narrowPeak optimal idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF170CUA, ENCFF332WUR, ENCFF439TUB, ENCFF547MET 457750 ENCODE Processing Pipeline 6afe57353c674fc5ee94857647777768 https://www.encodeproject.org/files/ENCFF451ZPC/@@download/ENCFF451ZPC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001LNV bigBed broadPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAP 476581 Bing Ren, UCSD 259ea9f94be5e7b3a01e3dc0a049c906 https://www.encodeproject.org/files/ENCFF001LNV/@@download/ENCFF001LNV.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF001LNW bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOC 257814024 Bing Ren, UCSD 7945ab7c72920afc6c0e3e1fbdfd2bf2 https://www.encodeproject.org/files/ENCFF001LNW/@@download/ENCFF001LNW.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF001LNX bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOH 586366538 Bing Ren, UCSD b73fe85e9f59a1fc0a37d50c40eaff9e https://www.encodeproject.org/files/ENCFF001LNX/@@download/ENCFF001LNX.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF001LNY bigWig signal ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNW, ENCFF001LNX 68390157 Bing Ren, UCSD 308d42a5b865dbd0f5ea8ffe3071a703 https://www.encodeproject.org/files/ENCFF001LNY/@@download/ENCFF001LNY.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF001LOC fastq reads ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 285242199 Bing Ren, UCSD 870ffd53434093858490f1c0ca2d60d0 https://www.encodeproject.org/files/ENCFF001LOC/@@download/ENCFF001LOC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF001LOH fastq reads ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 907765095 Bing Ren, UCSD 774ac4e9d99baacb0212eb60dee5b400 https://www.encodeproject.org/files/ENCFF001LOH/@@download/ENCFF001LOH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF001YAP bed broadPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNW, ENCFF001LNX 254788 Bing Ren, UCSD 689c55125e2ef6f34e6f15c9e650bb3e https://www.encodeproject.org/files/ENCFF001YAP/@@download/ENCFF001YAP.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF069IYJ bam unfiltered alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOC, ENCFF018NEO 328451276 ENCODE Processing Pipeline 4b3dcb7b33775f9db2475c54b8b58b80 https://www.encodeproject.org/files/ENCFF069IYJ/@@download/ENCFF069IYJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF048SKE bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOC, ENCFF018NEO 207606107 ENCODE Processing Pipeline 6c0dd57badf4a2ccfef0bea377198d7d https://www.encodeproject.org/files/ENCFF048SKE/@@download/ENCFF048SKE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF089LQS bam unfiltered alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOH, ENCFF018NEO 973466221 ENCODE Processing Pipeline 172d15707923af181b9f9e31ebe267fd https://www.encodeproject.org/files/ENCFF089LQS/@@download/ENCFF089LQS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF105EZY bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOH, ENCFF018NEO 499236178 ENCODE Processing Pipeline 7313694795f30b8a36bdb80501981090 https://www.encodeproject.org/files/ENCFF105EZY/@@download/ENCFF105EZY.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF457TAX bigWig fold change over control ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 165574545 ENCODE Processing Pipeline 15a7b4fff4a044387ed5a11822f14c7a https://www.encodeproject.org/files/ENCFF457TAX/@@download/ENCFF457TAX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF938KPF bed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF048SKE, ENCFF493MBH, ENCFF738EUE 1800310 ENCODE Processing Pipeline a4741661fbc63fc194e4998d2b755c9b https://www.encodeproject.org/files/ENCFF938KPF/@@download/ENCFF938KPF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF662WJY bigBed narrowPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF460DBD 7841692 ENCODE Processing Pipeline c859fee7012a3b2a7deb3450bb2120ba https://www.encodeproject.org/files/ENCFF662WJY/@@download/ENCFF662WJY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF358JEC bigWig signal p-value ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF048SKE, ENCFF493MBH, ENCFF738EUE 197571550 ENCODE Processing Pipeline 8c5334e09dd11771f95c4a21c9a7fcb6 https://www.encodeproject.org/files/ENCFF358JEC/@@download/ENCFF358JEC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF317TML bigWig signal p-value ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF048SKE, ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 238316260 ENCODE Processing Pipeline 4e6bfcd07543f684020c23771b9d17d3 https://www.encodeproject.org/files/ENCFF317TML/@@download/ENCFF317TML.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF790BWV bigWig fold change over control ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF048SKE, ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 226408482 ENCODE Processing Pipeline 9290b346eba27030ce98ee3dea40fd0b https://www.encodeproject.org/files/ENCFF790BWV/@@download/ENCFF790BWV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF752OXC bed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF048SKE, ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 3004501 ENCODE Processing Pipeline f9a029d982ec580973b9d6bd1c1e9751 https://www.encodeproject.org/files/ENCFF752OXC/@@download/ENCFF752OXC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF505ATZ bigBed narrowPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF752OXC 6303233 ENCODE Processing Pipeline 1b013409477258a10cccaef5ebab22b6 https://www.encodeproject.org/files/ENCFF505ATZ/@@download/ENCFF505ATZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF197JZI bigWig signal p-value ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 240219990 ENCODE Processing Pipeline 56d69eeb44eb73f68a3c99663350c6f4 https://www.encodeproject.org/files/ENCFF197JZI/@@download/ENCFF197JZI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF235SIA bed narrowPeak conservative idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF460DBD, ENCFF547MET, ENCFF752OXC, ENCFF938KPF 269243 ENCODE Processing Pipeline 31fa08da467b0db7fd5b04f5d8fdaeb6 https://www.encodeproject.org/files/ENCFF235SIA/@@download/ENCFF235SIA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF821OXE bigBed narrowPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF938KPF 4096849 ENCODE Processing Pipeline 7ec8545820dfb873c5b54ff47b32510f https://www.encodeproject.org/files/ENCFF821OXE/@@download/ENCFF821OXE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF753KZV bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF235SIA 639391 ENCODE Processing Pipeline c605e1ad03b0635bba1dd2319316cf71 https://www.encodeproject.org/files/ENCFF753KZV/@@download/ENCFF753KZV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF392ACD bigWig fold change over control ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF048SKE, ENCFF493MBH, ENCFF738EUE 89727683 ENCODE Processing Pipeline dae9bce5a21941d58938f16555b0be1f https://www.encodeproject.org/files/ENCFF392ACD/@@download/ENCFF392ACD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF460DBD bed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 3526311 ENCODE Processing Pipeline fc321db7d909ea6ccf042b52a53ff120 https://www.encodeproject.org/files/ENCFF460DBD/@@download/ENCFF460DBD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF988EWY bed narrowPeak optimal idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF460DBD, ENCFF547MET, ENCFF752OXC, ENCFF938KPF 364466 ENCODE Processing Pipeline 116363c42358bf65b2d8d4f5632a329b https://www.encodeproject.org/files/ENCFF988EWY/@@download/ENCFF988EWY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF621DUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF988EWY 788219 ENCODE Processing Pipeline aa5a77b9d5609722fd329d89dd751d17 https://www.encodeproject.org/files/ENCFF621DUX/@@download/ENCFF621DUX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance extremely low read depth ENCFF435VYL fastq reads ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 567589765 Michael Snyder, Stanford 459f6fe1b1819385f3e87febc337e42e https://www.encodeproject.org/files/ENCFF435VYL/@@download/ENCFF435VYL.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF706XAJ bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF274DXL 705051255 Michael Snyder, Stanford 39fb52be3f5af79593f8541a3b4d4a5d https://www.encodeproject.org/files/ENCFF706XAJ/@@download/ENCFF706XAJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF883ROD bed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF343FQU, ENCFF706XAJ 303973 Michael Snyder, Stanford bf2332cce2ff315c93421cd344cefd10 https://www.encodeproject.org/files/ENCFF883ROD/@@download/ENCFF883ROD.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF274DXL fastq reads ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 998637992 Michael Snyder, Stanford 634f9df0dd9a88c1de1725eab096b5fa https://www.encodeproject.org/files/ENCFF274DXL/@@download/ENCFF274DXL.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF343FQU bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF435VYL 429395036 Michael Snyder, Stanford 0fc9e9fd17904d01e6838cb1f6c1d29d https://www.encodeproject.org/files/ENCFF343FQU/@@download/ENCFF343FQU.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF174KDI bigBed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF883ROD 691326 ENCODE Consortium 94e8fd45fabd06bc06e32779e2f2f63f https://www.encodeproject.org/files/ENCFF174KDI/@@download/ENCFF174KDI.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF138PFZ bam unfiltered alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF435VYL 666200185 ENCODE Processing Pipeline db37d84d1367409c5bf373ebda0cfa92 https://www.encodeproject.org/files/ENCFF138PFZ/@@download/ENCFF138PFZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF641TEA bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF435VYL 384212350 ENCODE Processing Pipeline cc4c7fa4e0ab0ece9d833083d3835877 https://www.encodeproject.org/files/ENCFF641TEA/@@download/ENCFF641TEA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF616KKM bam unfiltered alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF274DXL 1134301969 ENCODE Processing Pipeline 78c451176f3273ac70d0613527af34c3 https://www.encodeproject.org/files/ENCFF616KKM/@@download/ENCFF616KKM.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF385EDC bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF274DXL 588484753 ENCODE Processing Pipeline 389c52de4f3cdcb6b415c0cc22b6b528 https://www.encodeproject.org/files/ENCFF385EDC/@@download/ENCFF385EDC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF492KMW bigWig signal p-value ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF074LDJ, ENCFF641TEA, ENCFF966YUS 373880924 ENCODE Processing Pipeline daa9cc177ed16a90f6aeaca105fce7f9 https://www.encodeproject.org/files/ENCFF492KMW/@@download/ENCFF492KMW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF839GFU bigWig signal p-value ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF385EDC, ENCFF966YUS 433830687 ENCODE Processing Pipeline f9797335e3e100897c9347b4163bcedf https://www.encodeproject.org/files/ENCFF839GFU/@@download/ENCFF839GFU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF106UST bigWig signal p-value ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF074LDJ, ENCFF385EDC, ENCFF641TEA, ENCFF966YUS 482788937 ENCODE Processing Pipeline 0b30029ca2ccde8cb26da422bcdba36a https://www.encodeproject.org/files/ENCFF106UST/@@download/ENCFF106UST.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF366FIM bigWig fold change over control ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF074LDJ, ENCFF641TEA, ENCFF966YUS 232147454 ENCODE Processing Pipeline 6920971300fe2109df72a4791a7abe48 https://www.encodeproject.org/files/ENCFF366FIM/@@download/ENCFF366FIM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF419GDO bigWig fold change over control ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF385EDC, ENCFF966YUS 297255828 ENCODE Processing Pipeline c070f6b9bc8196b82bd944fc7e3eca34 https://www.encodeproject.org/files/ENCFF419GDO/@@download/ENCFF419GDO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF738IHC bigWig fold change over control ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF074LDJ, ENCFF385EDC, ENCFF641TEA, ENCFF966YUS 466211196 ENCODE Processing Pipeline 8999d0c1135c472421e482b34935cf87 https://www.encodeproject.org/files/ENCFF738IHC/@@download/ENCFF738IHC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF254FAR bed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF074LDJ, ENCFF641TEA, ENCFF966YUS 4151737 ENCODE Processing Pipeline 2b9c8907081360ba85e0cd40ad4114e9 https://www.encodeproject.org/files/ENCFF254FAR/@@download/ENCFF254FAR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF331PWC bed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF074LDJ, ENCFF385EDC, ENCFF641TEA, ENCFF966YUS 5372758 ENCODE Processing Pipeline acbffc25cc49548fe4ae2b6807d926e7 https://www.encodeproject.org/files/ENCFF331PWC/@@download/ENCFF331PWC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF111KNX bed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF385EDC, ENCFF966YUS 4739103 ENCODE Processing Pipeline 011082173a92dd666ad3de63ccc36ea7 https://www.encodeproject.org/files/ENCFF111KNX/@@download/ENCFF111KNX.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF796HVF bigBed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF254FAR 9604872 ENCODE Processing Pipeline 376455a78611d1b220d217f73f055e6d https://www.encodeproject.org/files/ENCFF796HVF/@@download/ENCFF796HVF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF288WPL bigBed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF111KNX 10933725 ENCODE Processing Pipeline 1d52a37a9d2d3bfaf62a6e4a83c926bb https://www.encodeproject.org/files/ENCFF288WPL/@@download/ENCFF288WPL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF480PIP bigBed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF331PWC 11324331 ENCODE Processing Pipeline 3f8e63b42039fac5cf45e3fb789e7cfc https://www.encodeproject.org/files/ENCFF480PIP/@@download/ENCFF480PIP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF535CTU bed narrowPeak conservative idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF111KNX, ENCFF254FAR, ENCFF331PWC, ENCFF547MET 288084 ENCODE Processing Pipeline afbb965427503fe7e18556478c22792d https://www.encodeproject.org/files/ENCFF535CTU/@@download/ENCFF535CTU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF599GJE bed narrowPeak optimal idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF111KNX, ENCFF254FAR, ENCFF331PWC, ENCFF547MET 300989 ENCODE Processing Pipeline 475b6cd9a23895688adf1c714694bf7b https://www.encodeproject.org/files/ENCFF599GJE/@@download/ENCFF599GJE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF968SPT bigBed narrowPeak conservative idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF535CTU 590586 ENCODE Processing Pipeline bb6d419a057793de18c01540f6228da9 https://www.encodeproject.org/files/ENCFF968SPT/@@download/ENCFF968SPT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF083BQU bigBed narrowPeak optimal idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF599GJE 610102 ENCODE Processing Pipeline 301a5384f65f106d62887dda05a366de https://www.encodeproject.org/files/ENCFF083BQU/@@download/ENCFF083BQU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF548AXA fastq reads ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 1380010561 Richard Myers, HAIB 145a296f07382bcd552003ab0d5d759e SRA:SRR5111731 https://www.encodeproject.org/files/ENCFF548AXA/@@download/ENCFF548AXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF876HRO/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF482ODC fastq reads ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1728830966 Richard Myers, HAIB d21138a6302425e019bd8c89e05b4424 SRA:SRR5111730 https://www.encodeproject.org/files/ENCFF482ODC/@@download/ENCFF482ODC.fastq.gz Illumina HiSeq 2000 /files/ENCFF876HRO/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF103JFC bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF548AXA, ENCFF806TVZ 1105145281 ENCODE Processing Pipeline d59d0bda5438918eedcba461a9e15129 https://www.encodeproject.org/files/ENCFF103JFC/@@download/ENCFF103JFC.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF991YID bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF482ODC, ENCFF806TVZ 1336203578 ENCODE Processing Pipeline 4d590d2bab95298d42a243af304d6ed6 https://www.encodeproject.org/files/ENCFF991YID/@@download/ENCFF991YID.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF728YBP bam unfiltered alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548AXA 1486808578 ENCODE Processing Pipeline c107d82cab09a06f122b8c7bef194719 https://www.encodeproject.org/files/ENCFF728YBP/@@download/ENCFF728YBP.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF797ITD bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548AXA 1104924953 ENCODE Processing Pipeline 1716bf24a4baf3e476d0164666199601 https://www.encodeproject.org/files/ENCFF797ITD/@@download/ENCFF797ITD.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF323GLP bam unfiltered alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF482ODC 1834149398 ENCODE Processing Pipeline ba4230d347a011e267889006021fc593 https://www.encodeproject.org/files/ENCFF323GLP/@@download/ENCFF323GLP.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF163GGA bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF482ODC 1335940972 ENCODE Processing Pipeline ff3cfea2057b2d1497ef2366b38e2203 https://www.encodeproject.org/files/ENCFF163GGA/@@download/ENCFF163GGA.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF184OFH bigWig signal p-value ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF163GGA, ENCFF503YHJ 353276687 ENCODE Processing Pipeline dc57ef036ddd4ccf3b272081362f8f22 https://www.encodeproject.org/files/ENCFF184OFH/@@download/ENCFF184OFH.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF817CTG bigWig signal p-value ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF503YHJ, ENCFF797ITD 360147019 ENCODE Processing Pipeline 018a872e5a51ecb24c58b4e462176e2a https://www.encodeproject.org/files/ENCFF817CTG/@@download/ENCFF817CTG.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF486GWI bigWig fold change over control ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF163GGA, ENCFF503YHJ 476316043 ENCODE Processing Pipeline d59199ae16418d1adb7256810b26ad02 https://www.encodeproject.org/files/ENCFF486GWI/@@download/ENCFF486GWI.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF481QMD bigWig signal p-value ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF163GGA, ENCFF503YHJ, ENCFF797ITD 344102505 ENCODE Processing Pipeline c803fda144b54ea2fb92625ed50c1f61 https://www.encodeproject.org/files/ENCFF481QMD/@@download/ENCFF481QMD.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF718HWX bed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF163GGA, ENCFF503YHJ, ENCFF797ITD 6449167 ENCODE Processing Pipeline b7fc8cde356a4e71739319aa28c1a486 https://www.encodeproject.org/files/ENCFF718HWX/@@download/ENCFF718HWX.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF118JZH bigBed narrowPeak peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF165TDV 13272043 ENCODE Processing Pipeline 52bb3ba2a4d105fd62fc4ccafd10b8f0 https://www.encodeproject.org/files/ENCFF118JZH/@@download/ENCFF118JZH.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF730HBA bigWig fold change over control ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF503YHJ, ENCFF797ITD 411974367 ENCODE Processing Pipeline 61dd427e43a6f1f0153fa4805c507cb6 https://www.encodeproject.org/files/ENCFF730HBA/@@download/ENCFF730HBA.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF165TDV bed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF163GGA, ENCFF503YHJ 5867873 ENCODE Processing Pipeline de54fb15263c776caa425aa206de9f9c https://www.encodeproject.org/files/ENCFF165TDV/@@download/ENCFF165TDV.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF987HMC bigBed narrowPeak peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF485TBQ 13208383 ENCODE Processing Pipeline 4e4d076d639748a8f77c6e1d5c662bfb https://www.encodeproject.org/files/ENCFF987HMC/@@download/ENCFF987HMC.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF583XLF bigWig fold change over control ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF163GGA, ENCFF503YHJ, ENCFF797ITD 745148412 ENCODE Processing Pipeline 84f96b0ea47670b74ede6c59b8e82891 https://www.encodeproject.org/files/ENCFF583XLF/@@download/ENCFF583XLF.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF956UZL bed narrowPeak optimal idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF165TDV, ENCFF485TBQ, ENCFF547MET, ENCFF718HWX 784401 ENCODE Processing Pipeline 75cc9a7fcfd6dd8e05485319aba618fa https://www.encodeproject.org/files/ENCFF956UZL/@@download/ENCFF956UZL.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF485TBQ bed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF503YHJ, ENCFF797ITD 5784319 ENCODE Processing Pipeline 68603d0211f98e8538116c6983a2d377 https://www.encodeproject.org/files/ENCFF485TBQ/@@download/ENCFF485TBQ.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF649PBQ bed narrowPeak conservative idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF165TDV, ENCFF485TBQ, ENCFF547MET, ENCFF718HWX 758067 ENCODE Processing Pipeline 08f77ea602a5ebe6415a18480b03cb66 https://www.encodeproject.org/files/ENCFF649PBQ/@@download/ENCFF649PBQ.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF094UIO bigBed narrowPeak peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF718HWX 13191140 ENCODE Processing Pipeline 9eacbd118b857a4d31aff9edcccc71e9 https://www.encodeproject.org/files/ENCFF094UIO/@@download/ENCFF094UIO.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF879GLU bigBed narrowPeak conservative idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF649PBQ 1323217 ENCODE Processing Pipeline b3da6112e8cdb271c5527be0169b81be https://www.encodeproject.org/files/ENCFF879GLU/@@download/ENCFF879GLU.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF195XXK bigBed narrowPeak optimal idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF956UZL 1361508 ENCODE Processing Pipeline 6a10d9b3f90d2993309bcbdd8b64fc3a https://www.encodeproject.org/files/ENCFF195XXK/@@download/ENCFF195XXK.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF001NLW bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NLZ 557399523 Michael Snyder, Stanford da5dc9245216e93f5c676fb1807cd9c3 https://www.encodeproject.org/files/ENCFF001NLW/@@download/ENCFF001NLW.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLY bigBed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIR 742420 Michael Snyder, Stanford 5240025abdb40f4ec1168b83ecb37da5 https://www.encodeproject.org/files/ENCFF001NLY/@@download/ENCFF001NLY.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLZ fastq reads ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 1019828534 Michael Snyder, Stanford c76e33c218bb9c3ce749b806d67f83b4 https://www.encodeproject.org/files/ENCFF001NLZ/@@download/ENCFF001NLZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NMB fastq reads ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1044399104 Michael Snyder, Stanford 35107279e8ebca380b3282154b625fe6 https://www.encodeproject.org/files/ENCFF001NMB/@@download/ENCFF001NMB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NMD bigWig signal ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NLW, ENCFF001NME 238498421 Michael Snyder, Stanford a83e5a9596ade8f522415ccf79408f32 https://www.encodeproject.org/files/ENCFF001NMD/@@download/ENCFF001NMD.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NME bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NMB 533150746 Michael Snyder, Stanford f5a262f1165683861c3948bc44cf8dcc https://www.encodeproject.org/files/ENCFF001NME/@@download/ENCFF001NME.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001YIR bed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NLW, ENCFF001NME 277922 Michael Snyder, Stanford dcbb9824da0903cd486ab681092a1ccd https://www.encodeproject.org/files/ENCFF001YIR/@@download/ENCFF001YIR.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF270VKT bam unfiltered alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMB, ENCFF018NEO 1128343758 ENCODE Processing Pipeline d647ce5eec7afbda8e446632a2421e3c https://www.encodeproject.org/files/ENCFF270VKT/@@download/ENCFF270VKT.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF025UUK bam unfiltered alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NLZ, ENCFF018NEO 1121483736 ENCODE Processing Pipeline 8376c08b235c5a84ea4a5bcfa274f6ec https://www.encodeproject.org/files/ENCFF025UUK/@@download/ENCFF025UUK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF117RLB bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMB, ENCFF018NEO 715236493 ENCODE Processing Pipeline 8b3b75bdedf391e6e76868046d6bdf11 https://www.encodeproject.org/files/ENCFF117RLB/@@download/ENCFF117RLB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF069HIE bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NLZ, ENCFF018NEO 759339058 ENCODE Processing Pipeline 857be1ae1b7470936b5fdcb741671cd4 https://www.encodeproject.org/files/ENCFF069HIE/@@download/ENCFF069HIE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF872DBE bigWig signal p-value ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF069HIE, ENCFF339ZWC 244679696 ENCODE Processing Pipeline a473d80e404311ab0e6ce5b8938636cb https://www.encodeproject.org/files/ENCFF872DBE/@@download/ENCFF872DBE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF356EBI bigWig fold change over control ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF069HIE, ENCFF339ZWC 313889497 ENCODE Processing Pipeline 626807ad3f97790bc562d7423d7a12a0 https://www.encodeproject.org/files/ENCFF356EBI/@@download/ENCFF356EBI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF852MBQ bigWig signal p-value ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF117RLB, ENCFF339ZWC 236678049 ENCODE Processing Pipeline ba4dc8f3876e1786f9fa1063a785b1e3 https://www.encodeproject.org/files/ENCFF852MBQ/@@download/ENCFF852MBQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF160ECL bigWig signal p-value ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF069HIE, ENCFF117RLB, ENCFF339ZWC 220983221 ENCODE Processing Pipeline 17669f70a14f4984ecea16e011edd99b https://www.encodeproject.org/files/ENCFF160ECL/@@download/ENCFF160ECL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF340HBG bigWig fold change over control ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF117RLB, ENCFF339ZWC 291431721 ENCODE Processing Pipeline 14fe58d0ea9e8fdd7e5b69b07e6fa823 https://www.encodeproject.org/files/ENCFF340HBG/@@download/ENCFF340HBG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF592TWQ bed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF069HIE, ENCFF339ZWC 577991 ENCODE Processing Pipeline 6f321a690093c4a1ccbc11a73a4cc4a2 https://www.encodeproject.org/files/ENCFF592TWQ/@@download/ENCFF592TWQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF429LKF bigWig fold change over control ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF069HIE, ENCFF117RLB, ENCFF339ZWC 528083329 ENCODE Processing Pipeline 5baa4ba2d504a43fec53537824ab4bb8 https://www.encodeproject.org/files/ENCFF429LKF/@@download/ENCFF429LKF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF538CFM bed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF117RLB, ENCFF339ZWC 793225 ENCODE Processing Pipeline e7f419d7aed17564d96b8543c86424a3 https://www.encodeproject.org/files/ENCFF538CFM/@@download/ENCFF538CFM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF513ULO bigBed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF592TWQ 1222656 ENCODE Processing Pipeline aeb0af51a268a925699f8afd60adb160 https://www.encodeproject.org/files/ENCFF513ULO/@@download/ENCFF513ULO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF160QIJ bed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF069HIE, ENCFF117RLB, ENCFF339ZWC 5102186 ENCODE Processing Pipeline 9934e266e798c9a3d034ee3407c4f705 https://www.encodeproject.org/files/ENCFF160QIJ/@@download/ENCFF160QIJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF041FQF bigBed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF538CFM 1649209 ENCODE Processing Pipeline b1e6549e3885c9038399d82d2706ca8f https://www.encodeproject.org/files/ENCFF041FQF/@@download/ENCFF041FQF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF622TGK bed narrowPeak conservative idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF160QIJ, ENCFF538CFM, ENCFF547MET, ENCFF592TWQ 163181 ENCODE Processing Pipeline a431968bb8aceda71a534b7e82010706 https://www.encodeproject.org/files/ENCFF622TGK/@@download/ENCFF622TGK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF601ECR bigBed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF160QIJ 10846892 ENCODE Processing Pipeline 4f5d4099aefa21fecff9f3a8a7cec42a https://www.encodeproject.org/files/ENCFF601ECR/@@download/ENCFF601ECR.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF813GUH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF622TGK 287097 ENCODE Processing Pipeline 9b28bdefda14f3dbb7f740712e30710b https://www.encodeproject.org/files/ENCFF813GUH/@@download/ENCFF813GUH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF049FSZ bed narrowPeak optimal idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF160QIJ, ENCFF538CFM, ENCFF547MET, ENCFF592TWQ 172863 ENCODE Processing Pipeline 0a1a52670f4c14edd6a2538541861e87 https://www.encodeproject.org/files/ENCFF049FSZ/@@download/ENCFF049FSZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF518ZGA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF049FSZ 299298 ENCODE Processing Pipeline 04ac2174746995f465a78ca09bd04ce3 https://www.encodeproject.org/files/ENCFF518ZGA/@@download/ENCFF518ZGA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NKI bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NLB 479536643 Michael Snyder, Stanford 573571939fd54e0cd61f9211684cf5de https://www.encodeproject.org/files/ENCFF001NKI/@@download/ENCFF001NKI.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001NKJ bigBed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIL 3832587 Michael Snyder, Stanford 770fc2d147ad472bc4697564a024626b https://www.encodeproject.org/files/ENCFF001NKJ/@@download/ENCFF001NKJ.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001NKL bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NLC 429275256 Michael Snyder, Stanford afbadf233155b5a64904bc05efbf1c33 https://www.encodeproject.org/files/ENCFF001NKL/@@download/ENCFF001NKL.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001NKN bigWig signal ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKI, ENCFF001NKL 326755746 Michael Snyder, Stanford 6adcf0c969dc98e2b84aba8a518085c8 https://www.encodeproject.org/files/ENCFF001NKN/@@download/ENCFF001NKN.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001NLB fastq reads ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1207886069 Michael Snyder, Stanford bed597cc700dd305c35c0144b51c94d4 https://www.encodeproject.org/files/ENCFF001NLB/@@download/ENCFF001NLB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001NLC fastq reads ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1107395945 Michael Snyder, Stanford 5572b34bbdc3d716fce385b058841637 https://www.encodeproject.org/files/ENCFF001NLC/@@download/ENCFF001NLC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001YIL bed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKI, ENCFF001NKL 1520556 Michael Snyder, Stanford d18db7a9eb9d9900ca7f08d585be81b2 https://www.encodeproject.org/files/ENCFF001YIL/@@download/ENCFF001YIL.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF321RLO bam unfiltered alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLB, ENCFF018NEO 1324582576 ENCODE Processing Pipeline 25a00a4dd01889c4faa8c527bb515a42 https://www.encodeproject.org/files/ENCFF321RLO/@@download/ENCFF321RLO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF315QLR bam unfiltered alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLC, ENCFF018NEO 1218580438 ENCODE Processing Pipeline 04c1b6fec7fa9c85f0dc5c9a91b92d14 https://www.encodeproject.org/files/ENCFF315QLR/@@download/ENCFF315QLR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF426YVP bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLB, ENCFF018NEO 774278149 ENCODE Processing Pipeline 236270dfa40cac52b57e7b8796122888 https://www.encodeproject.org/files/ENCFF426YVP/@@download/ENCFF426YVP.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF173QJM bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLC, ENCFF018NEO 742358878 ENCODE Processing Pipeline 82f466cac9aa497b28e9b2ef5ce58e80 https://www.encodeproject.org/files/ENCFF173QJM/@@download/ENCFF173QJM.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF404OKH bigWig signal p-value ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF426YVP 250369410 ENCODE Processing Pipeline 3c9414e46a1ddc10b3c0e8536c6a71a3 https://www.encodeproject.org/files/ENCFF404OKH/@@download/ENCFF404OKH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF021SZL bigWig signal p-value ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF173QJM, ENCFF339ZWC, ENCFF426YVP 224280054 ENCODE Processing Pipeline f295d7ff883015804ef51bcebc507291 https://www.encodeproject.org/files/ENCFF021SZL/@@download/ENCFF021SZL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF821KDO bigWig fold change over control ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF426YVP 298443429 ENCODE Processing Pipeline ac3e7b2eb989d123d905219c95392e83 https://www.encodeproject.org/files/ENCFF821KDO/@@download/ENCFF821KDO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF186JCO bigWig signal p-value ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF173QJM, ENCFF339ZWC 239549836 ENCODE Processing Pipeline 1ee0331b8fd9bba9cefd3987bc33a351 https://www.encodeproject.org/files/ENCFF186JCO/@@download/ENCFF186JCO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF827KVQ bigWig fold change over control ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF173QJM, ENCFF339ZWC 264245959 ENCODE Processing Pipeline 24b6f141e406144eba52dda0276e3c1c https://www.encodeproject.org/files/ENCFF827KVQ/@@download/ENCFF827KVQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF388SYO bigWig fold change over control ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF173QJM, ENCFF339ZWC, ENCFF426YVP 475248107 ENCODE Processing Pipeline b6c9acac404d2a2ea7d33fa81da544dc https://www.encodeproject.org/files/ENCFF388SYO/@@download/ENCFF388SYO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF301ZTS bed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF426YVP 3713382 ENCODE Processing Pipeline 6fa284163b86d728003161e866ef8306 https://www.encodeproject.org/files/ENCFF301ZTS/@@download/ENCFF301ZTS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF641HGZ bed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF173QJM, ENCFF339ZWC 4867225 ENCODE Processing Pipeline 6107958d54f70f5cc7c825b0f545b854 https://www.encodeproject.org/files/ENCFF641HGZ/@@download/ENCFF641HGZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF927ITB bigBed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF641HGZ 10714659 ENCODE Processing Pipeline e8c2cd3507590013c69738df26e47c92 https://www.encodeproject.org/files/ENCFF927ITB/@@download/ENCFF927ITB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF213ZZG bigBed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF534XMO 11301295 ENCODE Processing Pipeline 01d56dda12136ad848128e3457541656 https://www.encodeproject.org/files/ENCFF213ZZG/@@download/ENCFF213ZZG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF021WHW bigBed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF301ZTS 7943319 ENCODE Processing Pipeline 35e9889bb567611801c15bd81a6f8972 https://www.encodeproject.org/files/ENCFF021WHW/@@download/ENCFF021WHW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF534XMO bed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF173QJM, ENCFF339ZWC, ENCFF426YVP 5623072 ENCODE Processing Pipeline 464942682a0b6a358e3e3db7173ca90b https://www.encodeproject.org/files/ENCFF534XMO/@@download/ENCFF534XMO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF431OGL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF691ZAR 1648745 ENCODE Processing Pipeline db231c2e9279ff7e78682e8a5c8d3022 https://www.encodeproject.org/files/ENCFF431OGL/@@download/ENCFF431OGL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF691ZAR bed narrowPeak optimal idr thresholded peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF301ZTS, ENCFF534XMO, ENCFF547MET, ENCFF641HGZ 1009902 ENCODE Processing Pipeline e579ff40e4602aac7987dabb55426151 https://www.encodeproject.org/files/ENCFF691ZAR/@@download/ENCFF691ZAR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF096EGJ fastq reads ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1025246041 Richard Myers, HAIB 66467ed21327954b452a92a13adf11d3 SRA:SRR5111533 https://www.encodeproject.org/files/ENCFF096EGJ/@@download/ENCFF096EGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF331QQL/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF803MRJ fastq reads ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1083660814 Richard Myers, HAIB 83120264679b69e2e67591356b17ed60 SRA:SRR5111532 https://www.encodeproject.org/files/ENCFF803MRJ/@@download/ENCFF803MRJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF331QQL/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF605FQF bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF803MRJ, ENCFF806TVZ 815286530 ENCODE Processing Pipeline 6f121118ad2d7b13f4d8bfb9f3af7b20 https://www.encodeproject.org/files/ENCFF605FQF/@@download/ENCFF605FQF.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF579VFN bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF096EGJ, ENCFF806TVZ 733430746 ENCODE Processing Pipeline a6365a2474a69d215d762b55ab184c4f https://www.encodeproject.org/files/ENCFF579VFN/@@download/ENCFF579VFN.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF135YTD bam unfiltered alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 1142167584 ENCODE Processing Pipeline 2c845af5ebc39817a1e2091b2c1434b6 https://www.encodeproject.org/files/ENCFF135YTD/@@download/ENCFF135YTD.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF298WML bam unfiltered alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 1056189022 ENCODE Processing Pipeline 7b46e6bbfece35c25ed5276556a7e4cf https://www.encodeproject.org/files/ENCFF298WML/@@download/ENCFF298WML.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF676SED bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 815126823 ENCODE Processing Pipeline 709c251b972bc0a6fd186ecd78d7ec81 https://www.encodeproject.org/files/ENCFF676SED/@@download/ENCFF676SED.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF844ZSH bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 733279921 ENCODE Processing Pipeline 92902cb0ae4464000bebf544ca3cf3db https://www.encodeproject.org/files/ENCFF844ZSH/@@download/ENCFF844ZSH.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF488MHC bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 270803645 ENCODE Processing Pipeline 3d486be419756a79dab1fb053c17577a https://www.encodeproject.org/files/ENCFF488MHC/@@download/ENCFF488MHC.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF455ESQ bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 271209406 ENCODE Processing Pipeline a8a0ccaf0e0d1a7c1bb7f5ad497afe38 https://www.encodeproject.org/files/ENCFF455ESQ/@@download/ENCFF455ESQ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF587JOJ bed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 4484074 ENCODE Processing Pipeline 4c87cc3b529a7e93415bd7a36983a029 https://www.encodeproject.org/files/ENCFF587JOJ/@@download/ENCFF587JOJ.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF156AIW bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 343990991 ENCODE Processing Pipeline 4d42283f26f02804907ae16b46ca1fdf https://www.encodeproject.org/files/ENCFF156AIW/@@download/ENCFF156AIW.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF691ULU bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 460340272 ENCODE Processing Pipeline 1aefe2ca56dd25282c824a5a4ff3edc3 https://www.encodeproject.org/files/ENCFF691ULU/@@download/ENCFF691ULU.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF689ZFH bed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 5294966 ENCODE Processing Pipeline 45a735303e49bf66eaf81f68d5347030 https://www.encodeproject.org/files/ENCFF689ZFH/@@download/ENCFF689ZFH.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF191NHQ bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 294481670 ENCODE Processing Pipeline 3601bd279740eb08ac74e10765fb60b3 https://www.encodeproject.org/files/ENCFF191NHQ/@@download/ENCFF191NHQ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF900YUX bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 361534050 ENCODE Processing Pipeline a9519b6c17bf4109af743e1346971d23 https://www.encodeproject.org/files/ENCFF900YUX/@@download/ENCFF900YUX.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF449LBJ bed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 5614496 ENCODE Processing Pipeline 9c4119b9879223f55ef7d11c9de1f27e https://www.encodeproject.org/files/ENCFF449LBJ/@@download/ENCFF449LBJ.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF190CMG bigBed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF689ZFH 13124109 ENCODE Processing Pipeline 31b8f70695459e874b10c6643982a197 https://www.encodeproject.org/files/ENCFF190CMG/@@download/ENCFF190CMG.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF317UVR bigBed narrowPeak conservative idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF632FCA 1644282 ENCODE Processing Pipeline 33b34151de35b67a30565af836345772 https://www.encodeproject.org/files/ENCFF317UVR/@@download/ENCFF317UVR.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF632FCA bed narrowPeak conservative idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ, ENCFF547MET, ENCFF587JOJ, ENCFF689ZFH 808845 ENCODE Processing Pipeline b46835ac64e65dd2854b57b3dba7912a https://www.encodeproject.org/files/ENCFF632FCA/@@download/ENCFF632FCA.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF332QLW bed narrowPeak optimal idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ, ENCFF547MET, ENCFF587JOJ, ENCFF689ZFH 828425 ENCODE Processing Pipeline c50d9c738cf0414af6fbf5275be99b53 https://www.encodeproject.org/files/ENCFF332QLW/@@download/ENCFF332QLW.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF735TCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF332QLW 1680751 ENCODE Processing Pipeline b2a31ce4523bd55334348458780fae86 https://www.encodeproject.org/files/ENCFF735TCQ/@@download/ENCFF735TCQ.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF368MGB bigBed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF587JOJ 10592630 ENCODE Processing Pipeline 7da790889d3a4b986073c6826b8cfde5 https://www.encodeproject.org/files/ENCFF368MGB/@@download/ENCFF368MGB.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF440ATU bigBed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ 11141155 ENCODE Processing Pipeline bcf19cc892deda942ebd17444a5f842b https://www.encodeproject.org/files/ENCFF440ATU/@@download/ENCFF440ATU.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001NXW bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NYF 294317329 Michael Snyder, Stanford d01a42790e6514391cfbf3cf5f349156 https://www.encodeproject.org/files/ENCFF001NXW/@@download/ENCFF001NXW.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXX bigBed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKA 1466089 Michael Snyder, Stanford 993fb4f974a3bbd32ec7a36a8c21dd02 https://www.encodeproject.org/files/ENCFF001NXX/@@download/ENCFF001NXX.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXY bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NYK 331468446 Michael Snyder, Stanford 5f87f46254ae0f00036e2f50499b2191 https://www.encodeproject.org/files/ENCFF001NXY/@@download/ENCFF001NXY.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXZ bigWig signal ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NXW, ENCFF001NXY 225072997 Michael Snyder, Stanford 28a76d5b049ed098dda2f55410cebb2e https://www.encodeproject.org/files/ENCFF001NXZ/@@download/ENCFF001NXZ.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NYF fastq reads ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 866315037 Michael Snyder, Stanford 25f04432deee10aa54c04972f40529ce https://www.encodeproject.org/files/ENCFF001NYF/@@download/ENCFF001NYF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NYK fastq reads ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1057296684 Michael Snyder, Stanford 4b0a5dcfa3d26a01edc05f324216fd18 https://www.encodeproject.org/files/ENCFF001NYK/@@download/ENCFF001NYK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001YKA bed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NXW, ENCFF001NXY 611523 Michael Snyder, Stanford 37d4f4f09132ec7d6312a0fe9df1aec8 https://www.encodeproject.org/files/ENCFF001YKA/@@download/ENCFF001YKA.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF453NMH bam unfiltered alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYF, ENCFF018NEO 901394804 ENCODE Processing Pipeline 3b0558de7cce30b8cdd9dbb512e9f0ae https://www.encodeproject.org/files/ENCFF453NMH/@@download/ENCFF453NMH.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF046OEZ bam unfiltered alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYK, ENCFF018NEO 1170208689 ENCODE Processing Pipeline c52c12e478466faaa7b374f581739a9a https://www.encodeproject.org/files/ENCFF046OEZ/@@download/ENCFF046OEZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF292MTG bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYF, ENCFF018NEO 551306438 ENCODE Processing Pipeline 633b2fe046f4700ae7f2a3d7226c93e9 https://www.encodeproject.org/files/ENCFF292MTG/@@download/ENCFF292MTG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF202HIS bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYK, ENCFF018NEO 729223411 ENCODE Processing Pipeline 418117eae79323fda1ba05fd232c4b99 https://www.encodeproject.org/files/ENCFF202HIS/@@download/ENCFF202HIS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF371KZM bigWig signal p-value ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF202HIS, ENCFF292MTG 381674891 ENCODE Processing Pipeline bd38d353f35a54d0e5145de63409da70 https://www.encodeproject.org/files/ENCFF371KZM/@@download/ENCFF371KZM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF946VXI bigWig fold change over control ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF292MTG 183783576 ENCODE Processing Pipeline ee45ba10e6a9bcefbe4948ba66cfef42 https://www.encodeproject.org/files/ENCFF946VXI/@@download/ENCFF946VXI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF577NFA bigWig signal p-value ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF292MTG 337147514 ENCODE Processing Pipeline 1f3f6db0c613a4291bdd9a278c85b37c https://www.encodeproject.org/files/ENCFF577NFA/@@download/ENCFF577NFA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF504BVE bigWig signal p-value ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF202HIS 296442719 ENCODE Processing Pipeline 6378279c90433b501580f16d69ca161f https://www.encodeproject.org/files/ENCFF504BVE/@@download/ENCFF504BVE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF659FDY bed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF292MTG 6585025 ENCODE Processing Pipeline 6e9bdce05e59046df7f598bb98752d4f https://www.encodeproject.org/files/ENCFF659FDY/@@download/ENCFF659FDY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF906BFI bigWig fold change over control ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF202HIS, ENCFF292MTG 383791582 ENCODE Processing Pipeline a497c7fab882d5d711bf80dec971683f https://www.encodeproject.org/files/ENCFF906BFI/@@download/ENCFF906BFI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF486SVT bigWig fold change over control ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF202HIS 275292784 ENCODE Processing Pipeline 6bd76b6be2633875ef8074aaa6bad91e https://www.encodeproject.org/files/ENCFF486SVT/@@download/ENCFF486SVT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF547BST bed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF202HIS 6981179 ENCODE Processing Pipeline 0214ed7df3f15532c96787f92aa64b7c https://www.encodeproject.org/files/ENCFF547BST/@@download/ENCFF547BST.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF508QRL bigBed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF547BST 11187838 ENCODE Processing Pipeline 4e56aac0ce71d48b5e172009cb47d906 https://www.encodeproject.org/files/ENCFF508QRL/@@download/ENCFF508QRL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF847XVX bigBed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF659FDY 11349384 ENCODE Processing Pipeline a21427f834e28f876acd7fc8ef13a462 https://www.encodeproject.org/files/ENCFF847XVX/@@download/ENCFF847XVX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF736BXZ bed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF202HIS, ENCFF292MTG 7092103 ENCODE Processing Pipeline 6d446dce56d3cd70a6f438ee407e2d5e https://www.encodeproject.org/files/ENCFF736BXZ/@@download/ENCFF736BXZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF461SMQ bed narrowPeak conservative idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547BST, ENCFF547MET, ENCFF659FDY, ENCFF736BXZ 501756 ENCODE Processing Pipeline 09430dff80c13249f1e4638ae95ff4e5 https://www.encodeproject.org/files/ENCFF461SMQ/@@download/ENCFF461SMQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF900WCA bigBed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF736BXZ 11178865 ENCODE Processing Pipeline e75671811f68ac6f636dec5d98d5f373 https://www.encodeproject.org/files/ENCFF900WCA/@@download/ENCFF900WCA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF329WNY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF461SMQ 1016138 ENCODE Processing Pipeline 483010f89f97f9057a3c5371fa9133ad https://www.encodeproject.org/files/ENCFF329WNY/@@download/ENCFF329WNY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF291UPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF228IWF 1112579 ENCODE Processing Pipeline 30618754718be61f9e77de70ac0ede1b https://www.encodeproject.org/files/ENCFF291UPL/@@download/ENCFF291UPL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF228IWF bed narrowPeak optimal idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547BST, ENCFF547MET, ENCFF659FDY, ENCFF736BXZ 555351 ENCODE Processing Pipeline c0f83d3803366ad5ff188031f7502e2c https://www.encodeproject.org/files/ENCFF228IWF/@@download/ENCFF228IWF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF163NKO bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF433FQJ 358245111 Michael Snyder, Stanford 9006a88f5d9c6a3f29f6b68ccd3ffdd5 https://www.encodeproject.org/files/ENCFF163NKO/@@download/ENCFF163NKO.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF423RCQ fastq reads ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 893122499 Michael Snyder, Stanford 607c533c9a166ddeecd058c2d19ab404 https://www.encodeproject.org/files/ENCFF423RCQ/@@download/ENCFF423RCQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF052OAN bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF423RCQ 737114809 Michael Snyder, Stanford 8dec7af9ef2ceb5b81ad7b02cbcc8c5a https://www.encodeproject.org/files/ENCFF052OAN/@@download/ENCFF052OAN.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF139PSX bed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF052OAN, ENCFF163NKO 33429 Michael Snyder, Stanford 37a6373db96489532393e3b237473b44 https://www.encodeproject.org/files/ENCFF139PSX/@@download/ENCFF139PSX.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF433FQJ fastq reads ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 633473223 Michael Snyder, Stanford 3e49a5a2075545570f3a0c0d3c3c3e3a https://www.encodeproject.org/files/ENCFF433FQJ/@@download/ENCFF433FQJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF448YKU bigBed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF139PSX 133202 ENCODE Consortium 2aa5d977cf0b8a35ed5d5ee1bc2393c7 https://www.encodeproject.org/files/ENCFF448YKU/@@download/ENCFF448YKU.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF585RTO bam unfiltered alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF423RCQ 1219756143 ENCODE Processing Pipeline ed72bd018f3f5b29dfa06a8f631ba894 https://www.encodeproject.org/files/ENCFF585RTO/@@download/ENCFF585RTO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF233MDY bam unfiltered alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF433FQJ 714278522 ENCODE Processing Pipeline 61fbdf1e7ec72a08b6469be553789c9b https://www.encodeproject.org/files/ENCFF233MDY/@@download/ENCFF233MDY.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF513TUI bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF433FQJ 125440369 ENCODE Processing Pipeline 570bcde637e1e9765a4b535fd7827647 https://www.encodeproject.org/files/ENCFF513TUI/@@download/ENCFF513TUI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF862RHC bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF423RCQ 663501920 ENCODE Processing Pipeline 2ec3cc49f5fc40b3d5d464664fa17b2d https://www.encodeproject.org/files/ENCFF862RHC/@@download/ENCFF862RHC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF466MCQ bigBed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF571RCH 10393125 ENCODE Processing Pipeline e2b43bd61572d6c315001910e8da45ba https://www.encodeproject.org/files/ENCFF466MCQ/@@download/ENCFF466MCQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF729LTE bigWig fold change over control ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF513TUI 80257950 ENCODE Processing Pipeline eccc3971ea95a8515efc692aa7eeafbc https://www.encodeproject.org/files/ENCFF729LTE/@@download/ENCFF729LTE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF209BHJ bigBed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF613LTH 10633448 ENCODE Processing Pipeline a0dfb5149c1427c453fabba15519dfed https://www.encodeproject.org/files/ENCFF209BHJ/@@download/ENCFF209BHJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF430XPX bigWig signal p-value ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF513TUI 181030990 ENCODE Processing Pipeline df92892aea15a7d2ac7958f99e5f71a0 https://www.encodeproject.org/files/ENCFF430XPX/@@download/ENCFF430XPX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF899IYM bigWig signal p-value ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF862RHC 310004175 ENCODE Processing Pipeline 8fcf2ef5814ef6b7cbea911a9077f6b4 https://www.encodeproject.org/files/ENCFF899IYM/@@download/ENCFF899IYM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF532QBH bigWig signal p-value ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF513TUI, ENCFF862RHC 305265773 ENCODE Processing Pipeline b180b053f9bcfa4c83a67214a0498ecf https://www.encodeproject.org/files/ENCFF532QBH/@@download/ENCFF532QBH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF078OIH bigBed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF425HUT 3348957 ENCODE Processing Pipeline e5a2e223f48efb927ec83fc7ba540e23 https://www.encodeproject.org/files/ENCFF078OIH/@@download/ENCFF078OIH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF746XBQ bed narrowPeak conservative idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF425HUT, ENCFF547MET, ENCFF571RCH, ENCFF613LTH 36825 ENCODE Processing Pipeline 081c7c2c0cc22d017b7bd18f6e3e136c https://www.encodeproject.org/files/ENCFF746XBQ/@@download/ENCFF746XBQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF425HUT bed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF513TUI 1550064 ENCODE Processing Pipeline 719cd70c858fa8b0552f8d06538b00bc https://www.encodeproject.org/files/ENCFF425HUT/@@download/ENCFF425HUT.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF613LTH bed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF862RHC 4711359 ENCODE Processing Pipeline 3b9bec5c819c1b1c04c9c94dc5ab3fb2 https://www.encodeproject.org/files/ENCFF613LTH/@@download/ENCFF613LTH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF571RCH bed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF513TUI, ENCFF862RHC 4650038 ENCODE Processing Pipeline 6a32ae4d66a28e6d0631946c3afb79cb https://www.encodeproject.org/files/ENCFF571RCH/@@download/ENCFF571RCH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF467YLD bigBed narrowPeak conservative idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF746XBQ 117507 ENCODE Processing Pipeline 37099bfc4627f2eadce7815516a55796 https://www.encodeproject.org/files/ENCFF467YLD/@@download/ENCFF467YLD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF044OUI bed narrowPeak optimal idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF425HUT, ENCFF547MET, ENCFF571RCH, ENCFF613LTH 94709 ENCODE Processing Pipeline 33636b3a6a1e97a8984d21e425ab3f53 https://www.encodeproject.org/files/ENCFF044OUI/@@download/ENCFF044OUI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF537AGP bigBed narrowPeak optimal idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044OUI 237239 ENCODE Processing Pipeline 82bcbac294e5df17bd069e8f065da66b https://www.encodeproject.org/files/ENCFF537AGP/@@download/ENCFF537AGP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF735MDS bigWig fold change over control ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF862RHC 282541547 ENCODE Processing Pipeline 066151e474468b489131e39a2b4926b6 https://www.encodeproject.org/files/ENCFF735MDS/@@download/ENCFF735MDS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF822SQK bigWig fold change over control ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF513TUI, ENCFF862RHC 315452042 ENCODE Processing Pipeline c43c054d79fb673aa47263801172b5b1 https://www.encodeproject.org/files/ENCFF822SQK/@@download/ENCFF822SQK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF957RNI bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF186NAS 641319106 Michael Snyder, Stanford 81af377c6a23feefdb6376bb06b3db33 https://www.encodeproject.org/files/ENCFF957RNI/@@download/ENCFF957RNI.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF538BMI bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF592ERV 790905836 Michael Snyder, Stanford 86654c2aeb670804dea1c0c1e74733e1 https://www.encodeproject.org/files/ENCFF538BMI/@@download/ENCFF538BMI.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF445ZZT bed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF538BMI, ENCFF957RNI 349168 Michael Snyder, Stanford 006f46000113d1435dfceaee083c5243 https://www.encodeproject.org/files/ENCFF445ZZT/@@download/ENCFF445ZZT.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF592ERV fastq reads ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 845099169 Michael Snyder, Stanford 85320f303673650d550ad436f868b88d https://www.encodeproject.org/files/ENCFF592ERV/@@download/ENCFF592ERV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF186NAS fastq reads ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 746822664 Michael Snyder, Stanford 076cf403ab2c9574bcd6840a69e8629f https://www.encodeproject.org/files/ENCFF186NAS/@@download/ENCFF186NAS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF292UDW bigBed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF445ZZT 850102 ENCODE Consortium d695dd06c31b4d57cf9c0b18cb4277d4 https://www.encodeproject.org/files/ENCFF292UDW/@@download/ENCFF292UDW.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF377UYE bam unfiltered alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF186NAS 941051519 ENCODE Processing Pipeline e54646160216e072b2e8d6a0e5eff704 https://www.encodeproject.org/files/ENCFF377UYE/@@download/ENCFF377UYE.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF583HQR bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF186NAS 418344237 ENCODE Processing Pipeline beba160cb06b5c5f6d0466fcdc468f0f https://www.encodeproject.org/files/ENCFF583HQR/@@download/ENCFF583HQR.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF223IAO bam unfiltered alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF592ERV 1104711083 ENCODE Processing Pipeline afeac3b87116f58b72968f66c1647395 https://www.encodeproject.org/files/ENCFF223IAO/@@download/ENCFF223IAO.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF624QGV bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF592ERV 616161638 ENCODE Processing Pipeline b517bd64b4dff5ff23d0ffe40c31b852 https://www.encodeproject.org/files/ENCFF624QGV/@@download/ENCFF624QGV.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF630ECS bigWig signal p-value ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF583HQR 249361377 ENCODE Processing Pipeline 26a09df2bbd562e8b1e7920df147e16c https://www.encodeproject.org/files/ENCFF630ECS/@@download/ENCFF630ECS.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF439SGB bigWig fold change over control ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF624QGV 284743930 ENCODE Processing Pipeline 0cb8473477ef197242b4e4a3f7a283a9 https://www.encodeproject.org/files/ENCFF439SGB/@@download/ENCFF439SGB.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF554GYK bigWig signal p-value ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF624QGV 318511093 ENCODE Processing Pipeline 94f113c47675258e51c530badd10a4df https://www.encodeproject.org/files/ENCFF554GYK/@@download/ENCFF554GYK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF746CPX bed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF583HQR 4653725 ENCODE Processing Pipeline 5c945668208ce918e59557a8b0a49669 https://www.encodeproject.org/files/ENCFF746CPX/@@download/ENCFF746CPX.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF493WJO bigBed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF130MWN 13082891 ENCODE Processing Pipeline b3517c43c81672316a7e0e788a36cf8a https://www.encodeproject.org/files/ENCFF493WJO/@@download/ENCFF493WJO.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF898FTB bigBed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF746CPX 10249814 ENCODE Processing Pipeline ca085af0ad2cdb1d9d00d35a12c5d702 https://www.encodeproject.org/files/ENCFF898FTB/@@download/ENCFF898FTB.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF693DXQ bigBed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF838NPZ 10617153 ENCODE Processing Pipeline 7936d43a8c39e4c86e404a0424876edd https://www.encodeproject.org/files/ENCFF693DXQ/@@download/ENCFF693DXQ.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF373NYF bigWig signal p-value ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF583HQR, ENCFF624QGV 296540988 ENCODE Processing Pipeline 0a2514866a44eb59764ced46189f5086 https://www.encodeproject.org/files/ENCFF373NYF/@@download/ENCFF373NYF.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF128UGJ bigWig fold change over control ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF583HQR 202743490 ENCODE Processing Pipeline ac427af20df020c4fd3249accdc86e91 https://www.encodeproject.org/files/ENCFF128UGJ/@@download/ENCFF128UGJ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF507ODK bigWig fold change over control ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF583HQR, ENCFF624QGV 397546894 ENCODE Processing Pipeline 9b144242df592b55485d932e4365106e https://www.encodeproject.org/files/ENCFF507ODK/@@download/ENCFF507ODK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF838NPZ bed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF624QGV 4838801 ENCODE Processing Pipeline 56a94ddb69ef8073da16dba776ee17b8 https://www.encodeproject.org/files/ENCFF838NPZ/@@download/ENCFF838NPZ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF348YFB bed narrowPeak conservative idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF130MWN, ENCFF547MET, ENCFF746CPX, ENCFF838NPZ 325848 ENCODE Processing Pipeline 53f29392b0f2a78202ac87bc7ee7d422 https://www.encodeproject.org/files/ENCFF348YFB/@@download/ENCFF348YFB.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF017MEB bigBed narrowPeak conservative idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF348YFB 699176 ENCODE Processing Pipeline 9077ded78e2cd88b72fca954d72460cc https://www.encodeproject.org/files/ENCFF017MEB/@@download/ENCFF017MEB.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF130MWN bed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF583HQR, ENCFF624QGV 5459438 ENCODE Processing Pipeline 5b7f4032bcbbf5f2d9c8ace14d540133 https://www.encodeproject.org/files/ENCFF130MWN/@@download/ENCFF130MWN.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF350RQA bigBed narrowPeak optimal idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF885EHG 756754 ENCODE Processing Pipeline 2453561166742b5af7e1c67a0de32741 https://www.encodeproject.org/files/ENCFF350RQA/@@download/ENCFF350RQA.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF885EHG bed narrowPeak optimal idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF130MWN, ENCFF547MET, ENCFF746CPX, ENCFF838NPZ 363539 ENCODE Processing Pipeline 92906234a7c7b9e6aebbd9246ec1b6bd https://www.encodeproject.org/files/ENCFF885EHG/@@download/ENCFF885EHG.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF537ACV fastq reads ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 752589282 Michael Snyder, Stanford 94aeacafd015e30a03a20970875448d2 https://www.encodeproject.org/files/ENCFF537ACV/@@download/ENCFF537ACV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF453MVP fastq reads ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 489295777 Michael Snyder, Stanford 1e4e4879547294300ca75acbf35e6b64 https://www.encodeproject.org/files/ENCFF453MVP/@@download/ENCFF453MVP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF847YWU bed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF501VIR, ENCFF887OHE 622607 Michael Snyder, Stanford b9ba3986bb7e4afb5f54048a1f08c0a8 https://www.encodeproject.org/files/ENCFF847YWU/@@download/ENCFF847YWU.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF501VIR bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF537ACV 742859506 Michael Snyder, Stanford 7fb635f3ea24fc22c68e5a97ff0b829b https://www.encodeproject.org/files/ENCFF501VIR/@@download/ENCFF501VIR.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF887OHE bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF453MVP 477824062 Michael Snyder, Stanford 5f7a6e57c2549fade292f5626d8352a8 https://www.encodeproject.org/files/ENCFF887OHE/@@download/ENCFF887OHE.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF741VWN bigBed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF847YWU 1256417 ENCODE Consortium bc638b0ebfee492d0dca9fa865205327 https://www.encodeproject.org/files/ENCFF741VWN/@@download/ENCFF741VWN.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF349KCO bam unfiltered alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF453MVP 653816003 ENCODE Processing Pipeline 5526aa320fe1d81e1c298a399dad198d https://www.encodeproject.org/files/ENCFF349KCO/@@download/ENCFF349KCO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF279GLQ bam unfiltered alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF537ACV 1009045780 ENCODE Processing Pipeline 77ca81e3ed29338c9bf67dca9aa1437b https://www.encodeproject.org/files/ENCFF279GLQ/@@download/ENCFF279GLQ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF908WTX bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF453MVP 418935032 ENCODE Processing Pipeline ea78f282d8b778e49d9c799ec7e35b0c https://www.encodeproject.org/files/ENCFF908WTX/@@download/ENCFF908WTX.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF450DQZ bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF537ACV 670330387 ENCODE Processing Pipeline dd1964720745fe256d7c47c7d7bc5db9 https://www.encodeproject.org/files/ENCFF450DQZ/@@download/ENCFF450DQZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF375QBR bigWig signal p-value ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF450DQZ 233080943 ENCODE Processing Pipeline 3dc7fe19d03e498ce7888bafe1511d90 https://www.encodeproject.org/files/ENCFF375QBR/@@download/ENCFF375QBR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF717YGI bigWig signal p-value ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF908WTX 213558322 ENCODE Processing Pipeline e9fe18140610b5594d3cbe182bd1d708 https://www.encodeproject.org/files/ENCFF717YGI/@@download/ENCFF717YGI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF472DZE bigWig signal p-value ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF339ZWC, ENCFF450DQZ, ENCFF908WTX 230987985 ENCODE Processing Pipeline 7de4fd0322e1fe98fe555cc8ddb439e7 https://www.encodeproject.org/files/ENCFF472DZE/@@download/ENCFF472DZE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF843NKI bigWig fold change over control ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF450DQZ 268465315 ENCODE Processing Pipeline 6d8aa510a9625884e645255744f84f6d https://www.encodeproject.org/files/ENCFF843NKI/@@download/ENCFF843NKI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF055HUS bigWig fold change over control ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF908WTX 181004796 ENCODE Processing Pipeline 57de49d60c00188c96c79482c5b1e572 https://www.encodeproject.org/files/ENCFF055HUS/@@download/ENCFF055HUS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF177GZH bigWig fold change over control ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF339ZWC, ENCFF450DQZ, ENCFF908WTX 399947394 ENCODE Processing Pipeline 78e3424220be8e82c32e084d6e16ce81 https://www.encodeproject.org/files/ENCFF177GZH/@@download/ENCFF177GZH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF450XHA bed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF450DQZ 5247723 ENCODE Processing Pipeline aabb2cdcb0fc55b941ae88ae285d4e28 https://www.encodeproject.org/files/ENCFF450XHA/@@download/ENCFF450XHA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF782LDU bed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF339ZWC, ENCFF450DQZ, ENCFF908WTX 5628497 ENCODE Processing Pipeline a576b1f55ddfb17afd92c9ba5d9f4bcf https://www.encodeproject.org/files/ENCFF782LDU/@@download/ENCFF782LDU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF885IKN bed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF908WTX 4677372 ENCODE Processing Pipeline 370ad4c7a8d7ddfeecc1fe786740d202 https://www.encodeproject.org/files/ENCFF885IKN/@@download/ENCFF885IKN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF278REM bigBed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF885IKN 10028625 ENCODE Processing Pipeline 15819c6f2e16a4bbe5a4a01afa7ef1a9 https://www.encodeproject.org/files/ENCFF278REM/@@download/ENCFF278REM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF265QCZ bigBed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF450XHA 12640545 ENCODE Processing Pipeline 935a05605498c8e5655f85c84651a28a https://www.encodeproject.org/files/ENCFF265QCZ/@@download/ENCFF265QCZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF306OFN bigBed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF782LDU 12865821 ENCODE Processing Pipeline 07502946563afe31826b2a02828fde04 https://www.encodeproject.org/files/ENCFF306OFN/@@download/ENCFF306OFN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF059YTK bed narrowPeak conservative idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF450XHA, ENCFF547MET, ENCFF782LDU, ENCFF885IKN 644149 ENCODE Processing Pipeline 820e05f8bbf8428a42f8cd46934854f6 https://www.encodeproject.org/files/ENCFF059YTK/@@download/ENCFF059YTK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF460UQA bigBed narrowPeak conservative idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF059YTK 1367283 ENCODE Processing Pipeline 51d0e0593c09f4a4979771b50a33fe97 https://www.encodeproject.org/files/ENCFF460UQA/@@download/ENCFF460UQA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF079ITK bed narrowPeak optimal idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF450XHA, ENCFF547MET, ENCFF782LDU, ENCFF885IKN 648800 ENCODE Processing Pipeline a538df273a2b23d31a164ba1c571f817 https://www.encodeproject.org/files/ENCFF079ITK/@@download/ENCFF079ITK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF191ZRE bigBed narrowPeak optimal idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF079ITK 1376237 ENCODE Processing Pipeline 2a45bc21154e3e3821e00b2b12de9c1d https://www.encodeproject.org/files/ENCFF191ZRE/@@download/ENCFF191ZRE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF001NJX bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NKF 248917160 Michael Snyder, Stanford d1df49e9a00f7e2239265c2e9145fbd2 https://www.encodeproject.org/files/ENCFF001NJX/@@download/ENCFF001NJX.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NJY bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NKE 322606792 Michael Snyder, Stanford 2325cfbbb721ea5b87568c5a40540828 https://www.encodeproject.org/files/ENCFF001NJY/@@download/ENCFF001NJY.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NJZ bigBed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIJ 1577664 Michael Snyder, Stanford 388032aa76b593aa1a936743529c97b0 https://www.encodeproject.org/files/ENCFF001NJZ/@@download/ENCFF001NJZ.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NKA bigWig signal ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJX, ENCFF001NJY 217605297 Michael Snyder, Stanford c7fed341bfdbed6d1bb3bf8127a4356f https://www.encodeproject.org/files/ENCFF001NKA/@@download/ENCFF001NKA.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NKE fastq reads ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 650470421 Michael Snyder, Stanford 31b14a3202d378c267a2d5e2ba810053 https://www.encodeproject.org/files/ENCFF001NKE/@@download/ENCFF001NKE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001NKF fastq reads ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 903742161 Michael Snyder, Stanford 48d2e4d630f76556aedfd87e7444f358 https://www.encodeproject.org/files/ENCFF001NKF/@@download/ENCFF001NKF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001YIJ bed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJX, ENCFF001NJY 627024 Michael Snyder, Stanford ebefc0ce1db4a4f8fb0ea6e16f156668 https://www.encodeproject.org/files/ENCFF001YIJ/@@download/ENCFF001YIJ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF327CLX bam unfiltered alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKE, ENCFF018NEO 681734396 ENCODE Processing Pipeline f6356fb65027dee352bf9d2dae80e192 https://www.encodeproject.org/files/ENCFF327CLX/@@download/ENCFF327CLX.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF359XWZ bam unfiltered alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKF, ENCFF018NEO 992744205 ENCODE Processing Pipeline 697cbb8e51984502eb1da6b064e0ad4e https://www.encodeproject.org/files/ENCFF359XWZ/@@download/ENCFF359XWZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF825KCM bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKE, ENCFF018NEO 441844616 ENCODE Processing Pipeline 3fa493bdb8ab2426f4967d0870b52178 https://www.encodeproject.org/files/ENCFF825KCM/@@download/ENCFF825KCM.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF015RVC bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKF, ENCFF018NEO 611716522 ENCODE Processing Pipeline 5a5a1d22defa4d692dd0ae3690f4bc5f https://www.encodeproject.org/files/ENCFF015RVC/@@download/ENCFF015RVC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF957GOP bigWig signal p-value ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF825KCM 259319895 ENCODE Processing Pipeline cc2aaa1a2a0c32ae6e3371848427e405 https://www.encodeproject.org/files/ENCFF957GOP/@@download/ENCFF957GOP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF346GEQ bigWig signal p-value ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF015RVC, ENCFF528WZN 270328430 ENCODE Processing Pipeline 9aa450d4cef7fdb48ef325b8b0de4e8b https://www.encodeproject.org/files/ENCFF346GEQ/@@download/ENCFF346GEQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF744FLJ bigWig signal p-value ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015RVC, ENCFF528WZN, ENCFF825KCM 328220910 ENCODE Processing Pipeline f8d1931c3b515d1054c48f3788d9afbd https://www.encodeproject.org/files/ENCFF744FLJ/@@download/ENCFF744FLJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF944XTS bigWig fold change over control ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF825KCM 149680121 ENCODE Processing Pipeline a10211039187cac4b285eef441761fee https://www.encodeproject.org/files/ENCFF944XTS/@@download/ENCFF944XTS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF858GWL bigWig fold change over control ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF015RVC, ENCFF528WZN 226077880 ENCODE Processing Pipeline 2a2043102ca3eea9ed35baf51758d9d1 https://www.encodeproject.org/files/ENCFF858GWL/@@download/ENCFF858GWL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF847BNC bigWig fold change over control ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015RVC, ENCFF528WZN, ENCFF825KCM 320083747 ENCODE Processing Pipeline aa1ffba343cda57989600b34ed3dc275 https://www.encodeproject.org/files/ENCFF847BNC/@@download/ENCFF847BNC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF404OWN bed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF825KCM 6185993 ENCODE Processing Pipeline cd9b518499f2b21c8c77c096be682681 https://www.encodeproject.org/files/ENCFF404OWN/@@download/ENCFF404OWN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF351WCO bed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015RVC, ENCFF528WZN, ENCFF825KCM 6895697 ENCODE Processing Pipeline 9b45347fae77ff3755ba9cf3982b02e1 https://www.encodeproject.org/files/ENCFF351WCO/@@download/ENCFF351WCO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF189GIV bed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF015RVC, ENCFF528WZN 6529532 ENCODE Processing Pipeline 70d09092f25e82c33fe471e88946604e https://www.encodeproject.org/files/ENCFF189GIV/@@download/ENCFF189GIV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF083BFO bigBed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF404OWN 11719931 ENCODE Processing Pipeline ba2d51baa57f5ef59e6fec31dfaa1ffe https://www.encodeproject.org/files/ENCFF083BFO/@@download/ENCFF083BFO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF529XLU bigBed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF189GIV 12006419 ENCODE Processing Pipeline e67c1bf8b7444fe01cac46d1298c8399 https://www.encodeproject.org/files/ENCFF529XLU/@@download/ENCFF529XLU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF004PZE bigBed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF351WCO 11761890 ENCODE Processing Pipeline 869acfc260a9761f414993e2fe2fdc2d https://www.encodeproject.org/files/ENCFF004PZE/@@download/ENCFF004PZE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF908HHC bed narrowPeak conservative idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF189GIV, ENCFF351WCO, ENCFF404OWN, ENCFF547MET 507769 ENCODE Processing Pipeline 5752df86d852a731e1aa1765b4839fa7 https://www.encodeproject.org/files/ENCFF908HHC/@@download/ENCFF908HHC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF849UUG bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF908HHC 1116770 ENCODE Processing Pipeline 11ff7d167b2f29d35287227e5893bbb9 https://www.encodeproject.org/files/ENCFF849UUG/@@download/ENCFF849UUG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF125PID bed narrowPeak optimal idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF189GIV, ENCFF351WCO, ENCFF404OWN, ENCFF547MET 545905 ENCODE Processing Pipeline 0cc9791c704957ab32653bf5c161195f https://www.encodeproject.org/files/ENCFF125PID/@@download/ENCFF125PID.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF878YVT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF125PID 1183507 ENCODE Processing Pipeline c46396407acb597b342c65f1579cf6a7 https://www.encodeproject.org/files/ENCFF878YVT/@@download/ENCFF878YVT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGX bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NGZ 545197453 Michael Snyder, Stanford b59520ab5f7fc19afe47b3ba19059c1b https://www.encodeproject.org/files/ENCFF001NGX/@@download/ENCFF001NGX.bam mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NGY bigBed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YHZ 659798 Michael Snyder, Stanford d08ddd61f6f127654a510165a8c06ab1 https://www.encodeproject.org/files/ENCFF001NGY/@@download/ENCFF001NGY.bigBed mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NGZ fastq reads ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 990815467 Michael Snyder, Stanford dd8c2ecf15a343ff6f891260e9be65c2 https://www.encodeproject.org/files/ENCFF001NGZ/@@download/ENCFF001NGZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NHB fastq reads ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1158186924 Michael Snyder, Stanford c87b908d060998922e6eba92feeaf437 https://www.encodeproject.org/files/ENCFF001NHB/@@download/ENCFF001NHB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NHD bigWig signal ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NGX, ENCFF001NHE 386555919 Michael Snyder, Stanford 88536296ef5f4825c5e85cd893814818 https://www.encodeproject.org/files/ENCFF001NHD/@@download/ENCFF001NHD.bigWig mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NHE bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NHB 600759755 Michael Snyder, Stanford 3a8add0e84e56f5ba3a003fd65884267 https://www.encodeproject.org/files/ENCFF001NHE/@@download/ENCFF001NHE.bam mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001YHZ bed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NGX, ENCFF001NHE 297304 Michael Snyder, Stanford d35b5cac99da3b8a583439ed5aa3bda7 https://www.encodeproject.org/files/ENCFF001YHZ/@@download/ENCFF001YHZ.bed.gz mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF210MOO bam unfiltered alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHB, ENCFF018NEO 1308788829 ENCODE Processing Pipeline 89f3f23bee52f8f97bb4c608b6c4a198 https://www.encodeproject.org/files/ENCFF210MOO/@@download/ENCFF210MOO.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF271WNO bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHB, ENCFF018NEO 887607689 ENCODE Processing Pipeline dd670eda7de552e256f5455cc74a5b95 https://www.encodeproject.org/files/ENCFF271WNO/@@download/ENCFF271WNO.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF545NCO bam unfiltered alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NGZ, ENCFF018NEO 1107426408 ENCODE Processing Pipeline 2f27deb3469eb018dbb0630a36ff0e40 https://www.encodeproject.org/files/ENCFF545NCO/@@download/ENCFF545NCO.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF552KJL bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NGZ, ENCFF018NEO 785473760 ENCODE Processing Pipeline 22e41dfd0cc88ef28ef1ab0cdf9defe1 https://www.encodeproject.org/files/ENCFF552KJL/@@download/ENCFF552KJL.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF320XHF bigWig fold change over control ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF552KJL 310659765 ENCODE Processing Pipeline 986f5d8252b985b7bb644c1c2b37f9fa https://www.encodeproject.org/files/ENCFF320XHF/@@download/ENCFF320XHF.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF349HNU bigWig signal p-value ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF271WNO, ENCFF339ZWC 207425973 ENCODE Processing Pipeline 7fd6c604d0dfc6f4a5b1606bef251acd https://www.encodeproject.org/files/ENCFF349HNU/@@download/ENCFF349HNU.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF883NTS bigWig signal p-value ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF552KJL 246039627 ENCODE Processing Pipeline 67943ac8e2b6b66c7ff7692fd1173ad0 https://www.encodeproject.org/files/ENCFF883NTS/@@download/ENCFF883NTS.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF136MMK bigWig signal p-value ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF271WNO, ENCFF339ZWC, ENCFF552KJL 230682579 ENCODE Processing Pipeline 9c0afbce8fb2328444c31f4d4b9b3fe3 https://www.encodeproject.org/files/ENCFF136MMK/@@download/ENCFF136MMK.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF585PZU bed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF552KJL 577645 ENCODE Processing Pipeline 0c51edb0c55b2e35902f368de1b1b0a7 https://www.encodeproject.org/files/ENCFF585PZU/@@download/ENCFF585PZU.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF679YBA bigWig fold change over control ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF271WNO, ENCFF339ZWC 338999963 ENCODE Processing Pipeline 42ac383bb22e3f61227086d3f0c84329 https://www.encodeproject.org/files/ENCFF679YBA/@@download/ENCFF679YBA.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF835AUM bigWig fold change over control ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF271WNO, ENCFF339ZWC, ENCFF552KJL 564170799 ENCODE Processing Pipeline 6ce317680ec85ccf0d5e50bbf9330f27 https://www.encodeproject.org/files/ENCFF835AUM/@@download/ENCFF835AUM.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF456RMG bed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF271WNO, ENCFF339ZWC, ENCFF552KJL 5317635 ENCODE Processing Pipeline 93202eb5f7ea660dc7ff1e0727e22304 https://www.encodeproject.org/files/ENCFF456RMG/@@download/ENCFF456RMG.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF964IQI bigBed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF585PZU 1342767 ENCODE Processing Pipeline 43d0ba543ef30d2655911f8234079f36 https://www.encodeproject.org/files/ENCFF964IQI/@@download/ENCFF964IQI.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF519AAU bed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF271WNO, ENCFF339ZWC 4680678 ENCODE Processing Pipeline f54a41c29d5ea056518e63ce7fea92cf https://www.encodeproject.org/files/ENCFF519AAU/@@download/ENCFF519AAU.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF827RNT bigBed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF519AAU 10603038 ENCODE Processing Pipeline 14f2fc8664cf90b1342f08a28c6d8797 https://www.encodeproject.org/files/ENCFF827RNT/@@download/ENCFF827RNT.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF057ZCS bigBed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456RMG 12979780 ENCODE Processing Pipeline 5648a13beb00db1c3493d40878a936d8 https://www.encodeproject.org/files/ENCFF057ZCS/@@download/ENCFF057ZCS.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF199RWK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF578TRR 226946 ENCODE Processing Pipeline 731cb01c3e45210d312af64bce4544bc https://www.encodeproject.org/files/ENCFF199RWK/@@download/ENCFF199RWK.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF578TRR bed narrowPeak conservative idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456RMG, ENCFF519AAU, ENCFF547MET, ENCFF585PZU 92251 ENCODE Processing Pipeline d4370dcf896ada23f7e623131103c44b https://www.encodeproject.org/files/ENCFF578TRR/@@download/ENCFF578TRR.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF305FHK bed narrowPeak optimal idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456RMG, ENCFF519AAU, ENCFF547MET, ENCFF585PZU 225029 ENCODE Processing Pipeline 62f34e97c52ee49f5b5bc81d182f5407 https://www.encodeproject.org/files/ENCFF305FHK/@@download/ENCFF305FHK.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF884IGX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF305FHK 497705 ENCODE Processing Pipeline 9fee190f18a264b53d8affec03a67e82 https://www.encodeproject.org/files/ENCFF884IGX/@@download/ENCFF884IGX.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF529HKW fastq reads ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 814257699 Michael Snyder, Stanford 7c9995a3788521b417a445a7ae4b07a4 https://www.encodeproject.org/files/ENCFF529HKW/@@download/ENCFF529HKW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF819NZN bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF254ZVV 999752762 Michael Snyder, Stanford 7a77cd8f7a9ee318cb5755f52cc94131 https://www.encodeproject.org/files/ENCFF819NZN/@@download/ENCFF819NZN.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF530LPO bed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF208VKG, ENCFF819NZN 118691 Michael Snyder, Stanford 6de636631da2e8eacd3549f7a9f8cd8a https://www.encodeproject.org/files/ENCFF530LPO/@@download/ENCFF530LPO.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF208VKG bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF529HKW 677279961 Michael Snyder, Stanford 620f705525b19f6d6bfe5be9c0fb8671 https://www.encodeproject.org/files/ENCFF208VKG/@@download/ENCFF208VKG.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF254ZVV fastq reads ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 1199139199 Michael Snyder, Stanford 957dbdca3716f4959c5a102ae5e31a00 https://www.encodeproject.org/files/ENCFF254ZVV/@@download/ENCFF254ZVV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF154HRN bigBed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF530LPO 319426 ENCODE Consortium 23eccd8dccf7af8f9ef78e75275ecfed https://www.encodeproject.org/files/ENCFF154HRN/@@download/ENCFF154HRN.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF865TRX bam unfiltered alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF529HKW 991162224 ENCODE Processing Pipeline 9deac835d52b5cfe086ca94c1208e171 https://www.encodeproject.org/files/ENCFF865TRX/@@download/ENCFF865TRX.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF468PZK bam unfiltered alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF254ZVV 1421754325 ENCODE Processing Pipeline c73390274c523e2eb771f81b58bfd6b2 https://www.encodeproject.org/files/ENCFF468PZK/@@download/ENCFF468PZK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF941EUJ bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF529HKW 605535644 ENCODE Processing Pipeline 4e335fdcc8f6c040f798022553870625 https://www.encodeproject.org/files/ENCFF941EUJ/@@download/ENCFF941EUJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF044NRI bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF254ZVV 854358725 ENCODE Processing Pipeline e488a44bc42fcbecb8189751f7561a17 https://www.encodeproject.org/files/ENCFF044NRI/@@download/ENCFF044NRI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF739ZED bigWig signal p-value ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF044NRI, ENCFF074LDJ, ENCFF966YUS 473283940 ENCODE Processing Pipeline b263153d0c6578a353d1f76c106324ae https://www.encodeproject.org/files/ENCFF739ZED/@@download/ENCFF739ZED.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF330GUU bigWig signal p-value ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 437792348 ENCODE Processing Pipeline 1605221ac99b5d6608c3eb022bfdae3f https://www.encodeproject.org/files/ENCFF330GUU/@@download/ENCFF330GUU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF355ARX bigWig signal p-value ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044NRI, ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 612106805 ENCODE Processing Pipeline 473971a22fa4a1f54820e80617abf528 https://www.encodeproject.org/files/ENCFF355ARX/@@download/ENCFF355ARX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF071WHE bigWig fold change over control ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF044NRI, ENCFF074LDJ, ENCFF966YUS 444707532 ENCODE Processing Pipeline b51ee0df1f5fb0f42a7241f050232cd0 https://www.encodeproject.org/files/ENCFF071WHE/@@download/ENCFF071WHE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF881UHV bigWig fold change over control ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 323370258 ENCODE Processing Pipeline 483e43d07741ec771b2c7e7e09ad83fc https://www.encodeproject.org/files/ENCFF881UHV/@@download/ENCFF881UHV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF064FUW bigWig fold change over control ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044NRI, ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 621740907 ENCODE Processing Pipeline 67f61bb65a5683324edeff0c0195aaf6 https://www.encodeproject.org/files/ENCFF064FUW/@@download/ENCFF064FUW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF192FJH bed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF044NRI, ENCFF074LDJ, ENCFF966YUS 5149139 ENCODE Processing Pipeline 5a1fb99dc3b381ace11051635a63758f https://www.encodeproject.org/files/ENCFF192FJH/@@download/ENCFF192FJH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF098AAD bed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 5300932 ENCODE Processing Pipeline 45b620343d860186b72e60161ea1a96d https://www.encodeproject.org/files/ENCFF098AAD/@@download/ENCFF098AAD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF410WXS bed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044NRI, ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 5788410 ENCODE Processing Pipeline cd6e3581864828e9718be4f26c9d5a14 https://www.encodeproject.org/files/ENCFF410WXS/@@download/ENCFF410WXS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF598PJP bigBed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF192FJH 11174458 ENCODE Processing Pipeline ae16ff755f600d306fb635cf7dc616b5 https://www.encodeproject.org/files/ENCFF598PJP/@@download/ENCFF598PJP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF998CUS bigBed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF098AAD 13216627 ENCODE Processing Pipeline 0a258ae759c4099fd0d799e41a417788 https://www.encodeproject.org/files/ENCFF998CUS/@@download/ENCFF998CUS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF466DTV bed narrowPeak conservative idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF098AAD, ENCFF192FJH, ENCFF410WXS, ENCFF547MET 140905 ENCODE Processing Pipeline 2509eb64b9ee185dd7a4a2b6ce950644 https://www.encodeproject.org/files/ENCFF466DTV/@@download/ENCFF466DTV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF137JLJ bigBed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF410WXS 13422885 ENCODE Processing Pipeline de5f2fc7437b2f6cd84b7a6b3bf3f12f https://www.encodeproject.org/files/ENCFF137JLJ/@@download/ENCFF137JLJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF971MQY bigBed narrowPeak conservative idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF466DTV 318834 ENCODE Processing Pipeline e76dd7347f324ae33909be894ed46083 https://www.encodeproject.org/files/ENCFF971MQY/@@download/ENCFF971MQY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF373CDN bed narrowPeak optimal idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF098AAD, ENCFF192FJH, ENCFF410WXS, ENCFF547MET 154253 ENCODE Processing Pipeline 699e3b424c443869f1f5158abbc4f39d https://www.encodeproject.org/files/ENCFF373CDN/@@download/ENCFF373CDN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF805VMH bigBed narrowPeak optimal idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF373CDN 338424 ENCODE Processing Pipeline 4dbec659dd1a4aef487625e9363bb9ad https://www.encodeproject.org/files/ENCFF805VMH/@@download/ENCFF805VMH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF001NHX bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NIA 590662173 Michael Snyder, Stanford f31c0d4472d4bee1390fe31670f0701c https://www.encodeproject.org/files/ENCFF001NHX/@@download/ENCFF001NHX.bam mm9 released low read length, borderline replicate concordance ENCFF001NHY bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NIC 588675355 Michael Snyder, Stanford e8a318fb57a9d18e199f6548e70f9c7c https://www.encodeproject.org/files/ENCFF001NHY/@@download/ENCFF001NHY.bam mm9 released low read length, borderline replicate concordance ENCFF001NHZ bigBed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIC 1645969 Michael Snyder, Stanford 185a62ce716bb0d89468665721d90343 https://www.encodeproject.org/files/ENCFF001NHZ/@@download/ENCFF001NHZ.bigBed mm9 released low read length, borderline replicate concordance ENCFF001NIA fastq reads ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1310165379 Michael Snyder, Stanford f62994515a5d09a7d293452cadbc72da https://www.encodeproject.org/files/ENCFF001NIA/@@download/ENCFF001NIA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, borderline replicate concordance ENCFF001NIC fastq reads ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1254153649 Michael Snyder, Stanford 96dfb01dab77c3fc0f454e57f2414bef https://www.encodeproject.org/files/ENCFF001NIC/@@download/ENCFF001NIC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, borderline replicate concordance ENCFF001NIE bigWig signal ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHX, ENCFF001NHY 396825105 Michael Snyder, Stanford 4cc384ca1d7ac98eb1d4b674e4950cd3 https://www.encodeproject.org/files/ENCFF001NIE/@@download/ENCFF001NIE.bigWig mm9 released low read length, borderline replicate concordance ENCFF001YIC bed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHX, ENCFF001NHY 749006 Michael Snyder, Stanford fced0886cd2904895d00f09ec4ccd83c https://www.encodeproject.org/files/ENCFF001YIC/@@download/ENCFF001YIC.bed.gz mm9 released low read length, borderline replicate concordance ENCFF978KHB bam unfiltered alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIA, ENCFF018NEO 1447206869 ENCODE Processing Pipeline c304c4e0099f3f23f30220ff8ec0a017 https://www.encodeproject.org/files/ENCFF978KHB/@@download/ENCFF978KHB.bam mm10 released low read length, borderline replicate concordance ENCFF228URL bam unfiltered alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIC, ENCFF018NEO 1366205442 ENCODE Processing Pipeline b597776b7851827fa3a9d3429bddc42b https://www.encodeproject.org/files/ENCFF228URL/@@download/ENCFF228URL.bam mm10 released low read length, borderline replicate concordance ENCFF293AUO bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIC, ENCFF018NEO 905656227 ENCODE Processing Pipeline d326cb709ade95966e3e65ccc63d165b https://www.encodeproject.org/files/ENCFF293AUO/@@download/ENCFF293AUO.bam mm10 released low read length, borderline replicate concordance ENCFF803DOV bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIA, ENCFF018NEO 963917869 ENCODE Processing Pipeline 50498abb57016ec11e2eff4dc4c7dcda https://www.encodeproject.org/files/ENCFF803DOV/@@download/ENCFF803DOV.bam mm10 released low read length, borderline replicate concordance ENCFF928VVV bigWig signal p-value ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF803DOV 208636834 ENCODE Processing Pipeline f640b4e3cc9b157ba71143da65899b77 https://www.encodeproject.org/files/ENCFF928VVV/@@download/ENCFF928VVV.bigWig mm10 released low read length, borderline replicate concordance ENCFF832LUX bigWig signal p-value ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF293AUO, ENCFF339ZWC 224343307 ENCODE Processing Pipeline 58b74337d3c4795e471c01ae1732e8ce https://www.encodeproject.org/files/ENCFF832LUX/@@download/ENCFF832LUX.bigWig mm10 released low read length, borderline replicate concordance ENCFF367AWT bigWig fold change over control ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF803DOV 333683640 ENCODE Processing Pipeline 718c6f54a5860f2503df6eb9651ecde9 https://www.encodeproject.org/files/ENCFF367AWT/@@download/ENCFF367AWT.bigWig mm10 released low read length, borderline replicate concordance ENCFF560XBX bigWig fold change over control ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF293AUO, ENCFF339ZWC 355040834 ENCODE Processing Pipeline 317f0efabb464f2280697c8c04739f35 https://www.encodeproject.org/files/ENCFF560XBX/@@download/ENCFF560XBX.bigWig mm10 released low read length, borderline replicate concordance ENCFF339HVI bigWig signal p-value ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293AUO, ENCFF339ZWC, ENCFF803DOV 207770797 ENCODE Processing Pipeline 5aa19f8e5d7a841682de928e75e12c51 https://www.encodeproject.org/files/ENCFF339HVI/@@download/ENCFF339HVI.bigWig mm10 released low read length, borderline replicate concordance ENCFF727IMP bigWig fold change over control ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293AUO, ENCFF339ZWC, ENCFF803DOV 582649211 ENCODE Processing Pipeline 939940342239728a7c3bed62cfc69727 https://www.encodeproject.org/files/ENCFF727IMP/@@download/ENCFF727IMP.bigWig mm10 released low read length, borderline replicate concordance ENCFF085OPN bed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF293AUO, ENCFF339ZWC 5108009 ENCODE Processing Pipeline c1dfd0682127396f17845a69cc0e0a89 https://www.encodeproject.org/files/ENCFF085OPN/@@download/ENCFF085OPN.bed.gz mm10 released low read length, borderline replicate concordance ENCFF809MLM bed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF803DOV 727827 ENCODE Processing Pipeline 9d318318395664f4b1fa8ad6e6a7542c https://www.encodeproject.org/files/ENCFF809MLM/@@download/ENCFF809MLM.bed.gz mm10 released low read length, borderline replicate concordance ENCFF893RVJ bed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293AUO, ENCFF339ZWC, ENCFF803DOV 5558563 ENCODE Processing Pipeline 896573cde8923b67af7db21b8ceebfa5 https://www.encodeproject.org/files/ENCFF893RVJ/@@download/ENCFF893RVJ.bed.gz mm10 released low read length, borderline replicate concordance ENCFF740QUU bigBed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF085OPN 12838801 ENCODE Processing Pipeline 9e09913eb88b771641bf7ee1d3678f20 https://www.encodeproject.org/files/ENCFF740QUU/@@download/ENCFF740QUU.bigBed mm10 released low read length, borderline replicate concordance ENCFF071ZOF bigBed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF809MLM 1495665 ENCODE Processing Pipeline 712adac00986713ab4630495b18f5765 https://www.encodeproject.org/files/ENCFF071ZOF/@@download/ENCFF071ZOF.bigBed mm10 released low read length, borderline replicate concordance ENCFF441WRA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF981BEO 348030 ENCODE Processing Pipeline 3da1b3d06e4711067549e4baaf41f700 https://www.encodeproject.org/files/ENCFF441WRA/@@download/ENCFF441WRA.bigBed mm10 released low read length, borderline replicate concordance ENCFF290WGR bed narrowPeak optimal idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF085OPN, ENCFF547MET, ENCFF809MLM, ENCFF893RVJ 390830 ENCODE Processing Pipeline d64150a52d887cc55594e77461446ee1 https://www.encodeproject.org/files/ENCFF290WGR/@@download/ENCFF290WGR.bed.gz mm10 released low read length, borderline replicate concordance ENCFF981BEO bed narrowPeak conservative idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF085OPN, ENCFF547MET, ENCFF809MLM, ENCFF893RVJ 161055 ENCODE Processing Pipeline df3cd6f24fb98203357477bd0b45f7ca https://www.encodeproject.org/files/ENCFF981BEO/@@download/ENCFF981BEO.bed.gz mm10 released low read length, borderline replicate concordance ENCFF570FCS bigBed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF893RVJ 13072106 ENCODE Processing Pipeline 46dfb104d0204ecec37c4876888e2e85 https://www.encodeproject.org/files/ENCFF570FCS/@@download/ENCFF570FCS.bigBed mm10 released low read length, borderline replicate concordance ENCFF095OCE bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF290WGR 672537 ENCODE Processing Pipeline 70cad92a9d985fa5d1f921cd8e3edc1f https://www.encodeproject.org/files/ENCFF095OCE/@@download/ENCFF095OCE.bigBed mm10 released low read length, borderline replicate concordance ENCFF001MWQ bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MWX 1854423542 Ross Hardison, PennState 845ab09dfa1adf51a9ba375acf8803a0 https://www.encodeproject.org/files/ENCFF001MWQ/@@download/ENCFF001MWQ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001MWR bigBed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGY 588858 Ross Hardison, PennState 2b921bd19564bb430e1d1f8bd17037f9 https://www.encodeproject.org/files/ENCFF001MWR/@@download/ENCFF001MWR.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001MWS bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MXC 3028082483 Ross Hardison, PennState 07eea3a18d0db3e8cb104ce73cf0577d https://www.encodeproject.org/files/ENCFF001MWS/@@download/ENCFF001MWS.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001MWT bigBed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGZ 497130 Ross Hardison, PennState e232b198f810bc466275baebef29650e https://www.encodeproject.org/files/ENCFF001MWT/@@download/ENCFF001MWT.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001MWU bigBed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YHA 608683 Ross Hardison, PennState 1e2c472f4d55ef7fcb23abcbf81349d9 https://www.encodeproject.org/files/ENCFF001MWU/@@download/ENCFF001MWU.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001MWV bigWig signal ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4604312241 Ross Hardison, PennState 4bc72555f623a06b8e05f44ae0a64b12 https://www.encodeproject.org/files/ENCFF001MWV/@@download/ENCFF001MWV.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MWW bigWig signal ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 4995361447 Ross Hardison, PennState edf23a6abc1380da628969ce7bf72adf https://www.encodeproject.org/files/ENCFF001MWW/@@download/ENCFF001MWW.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MWX fastq reads ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1477514484 Ross Hardison, PennState 957ac3da3ba301bc7e1ee194b32cf332 https://www.encodeproject.org/files/ENCFF001MWX/@@download/ENCFF001MWX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released mild to moderate bottlenecking, mixed read lengths, inconsistent control read length, low read length, moderate library complexity, inconsistent platforms ENCFF001MWY bigWig signal ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 5787483325 Ross Hardison, PennState 2ba6a08bf2ae353781a47168f6d6d2b3 https://www.encodeproject.org/files/ENCFF001MWY/@@download/ENCFF001MWY.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MXC fastq reads ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 2725715801 Ross Hardison, PennState 3b37889a8625303f5c7eb651ed7b50b3 https://www.encodeproject.org/files/ENCFF001MXC/@@download/ENCFF001MXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MWM/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001YGY bed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 295284 Ross Hardison, PennState e8ad33333522132c47c3cdf97430be0a https://www.encodeproject.org/files/ENCFF001YGY/@@download/ENCFF001YGY.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YGZ bed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 228214 Ross Hardison, PennState 049d2b05c4e52f47e059071fd0b527a8 https://www.encodeproject.org/files/ENCFF001YGZ/@@download/ENCFF001YGZ.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YHA bed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 302168 Ross Hardison, PennState 89f3e9bdabb736018deadd1b9253b013 https://www.encodeproject.org/files/ENCFF001YHA/@@download/ENCFF001YHA.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms missing derived_from ENCFF384FRU bam unfiltered alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MXC, ENCFF018NEO 2424657033 ENCODE Processing Pipeline 4c1b208344c3e3a69938a88267031024 https://www.encodeproject.org/files/ENCFF384FRU/@@download/ENCFF384FRU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF768OZY bam unfiltered alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWX, ENCFF018NEO 1786656234 ENCODE Processing Pipeline 0c842b822991ff7a260adefd85c1e813 https://www.encodeproject.org/files/ENCFF768OZY/@@download/ENCFF768OZY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF215ELT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MXC, ENCFF018NEO 1356812453 ENCODE Processing Pipeline 75c1928dbd2e6d482ac1225602aa9997 https://www.encodeproject.org/files/ENCFF215ELT/@@download/ENCFF215ELT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF334CYT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWX, ENCFF018NEO 1201426132 ENCODE Processing Pipeline 8f9bdd97a5dd54b465201561a94a534a https://www.encodeproject.org/files/ENCFF334CYT/@@download/ENCFF334CYT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF948CVE bigWig signal p-value ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 793861360 ENCODE Processing Pipeline c7851620cd927cf932873105f408d07c https://www.encodeproject.org/files/ENCFF948CVE/@@download/ENCFF948CVE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF004TBF bigWig signal p-value ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF215ELT, ENCFF339MRB, ENCFF484XJK 919446919 ENCODE Processing Pipeline 275e76c564163c71b1a341d80e3adafd https://www.encodeproject.org/files/ENCFF004TBF/@@download/ENCFF004TBF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF181TRX bigWig signal p-value ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF215ELT, ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 1259947215 ENCODE Processing Pipeline 2a49c865e40f663f27c2e16e227b82ef https://www.encodeproject.org/files/ENCFF181TRX/@@download/ENCFF181TRX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF102DYZ bigWig fold change over control ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 885039375 ENCODE Processing Pipeline 8bdb4e1bfdb64e2544870f6eaa24813e https://www.encodeproject.org/files/ENCFF102DYZ/@@download/ENCFF102DYZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF498IKF bigWig fold change over control ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF215ELT, ENCFF339MRB, ENCFF484XJK 960817777 ENCODE Processing Pipeline 599a1a6749887a2ef86563cdf1b87e06 https://www.encodeproject.org/files/ENCFF498IKF/@@download/ENCFF498IKF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF632YQC bigBed narrowPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF274VSJ 13555963 ENCODE Processing Pipeline 762e5a67a145437941615483bd0cb673 https://www.encodeproject.org/files/ENCFF632YQC/@@download/ENCFF632YQC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF302RFZ bigWig fold change over control ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF215ELT, ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 1297529969 ENCODE Processing Pipeline c11e539d5ebfa18ff722026edd4cce63 https://www.encodeproject.org/files/ENCFF302RFZ/@@download/ENCFF302RFZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF831EXK bed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF215ELT, ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 6972179 ENCODE Processing Pipeline 4647790a53517ea895f430ba60bfdc3f https://www.encodeproject.org/files/ENCFF831EXK/@@download/ENCFF831EXK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF274VSJ bed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 6469910 ENCODE Processing Pipeline 3ac9a450602f3fc30cfecc127062e640 https://www.encodeproject.org/files/ENCFF274VSJ/@@download/ENCFF274VSJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF719RHH bigBed narrowPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF704SPV 11375218 ENCODE Processing Pipeline 5e9242472171ad8dfd4ebb4bd8dcad1a https://www.encodeproject.org/files/ENCFF719RHH/@@download/ENCFF719RHH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF993PVV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF258PQA 560571 ENCODE Processing Pipeline 70ac6db273269c0fdd63840f5ad55675 https://www.encodeproject.org/files/ENCFF993PVV/@@download/ENCFF993PVV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF056THB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF047ODZ 566784 ENCODE Processing Pipeline 94a6d1e895a5a9f2c5c1c48bdcd530d0 https://www.encodeproject.org/files/ENCFF056THB/@@download/ENCFF056THB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF047ODZ bed narrowPeak optimal idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF274VSJ, ENCFF547MET, ENCFF704SPV, ENCFF831EXK 311461 ENCODE Processing Pipeline 371c46e26088049fa7b40b4ae83b0002 https://www.encodeproject.org/files/ENCFF047ODZ/@@download/ENCFF047ODZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF704SPV bed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF215ELT, ENCFF339MRB, ENCFF484XJK 6537897 ENCODE Processing Pipeline 5917904a5c66644586395b106473fcc1 https://www.encodeproject.org/files/ENCFF704SPV/@@download/ENCFF704SPV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF749KPN bigBed narrowPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF831EXK 13557810 ENCODE Processing Pipeline 919e707e7d15eba618eff9c4bf05a120 https://www.encodeproject.org/files/ENCFF749KPN/@@download/ENCFF749KPN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF258PQA bed narrowPeak conservative idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF274VSJ, ENCFF547MET, ENCFF704SPV, ENCFF831EXK 306554 ENCODE Processing Pipeline 65cb2173e2b4707f1e157c8c9ae2a252 https://www.encodeproject.org/files/ENCFF258PQA/@@download/ENCFF258PQA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths, inconsistent platforms ENCFF001NHT bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NIG 297222136 Michael Snyder, Stanford 7ee01e873c26270a1a44ebe5a2ddc122 https://www.encodeproject.org/files/ENCFF001NHT/@@download/ENCFF001NHT.bam mm9 released low read length, low read depth ENCFF001NHU bigBed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIB 732200 Michael Snyder, Stanford 0a73c4529c6e5a912c290afa32035cc4 https://www.encodeproject.org/files/ENCFF001NHU/@@download/ENCFF001NHU.bigBed mm9 released low read length, low read depth ENCFF001NHV bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NIL 330203459 Michael Snyder, Stanford cef2a5311c1dd450306a627fa6035bd4 https://www.encodeproject.org/files/ENCFF001NHV/@@download/ENCFF001NHV.bam mm9 released low read length, low read depth ENCFF001NHW bigWig signal ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHT, ENCFF001NHV 266377835 Michael Snyder, Stanford eced6be2a50db1ab326f64cd25aa8355 https://www.encodeproject.org/files/ENCFF001NHW/@@download/ENCFF001NHW.bigWig mm9 released low read length, low read depth ENCFF001NIG fastq reads ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1054017987 Michael Snyder, Stanford 8fbeeae6fc3e91ccbbc7322aa6ee31a2 https://www.encodeproject.org/files/ENCFF001NIG/@@download/ENCFF001NIG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001NIL fastq reads ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1103743125 Michael Snyder, Stanford 5665ae28fa07e4b7ccc93f6674054188 https://www.encodeproject.org/files/ENCFF001NIL/@@download/ENCFF001NIL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001YIB bed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHT, ENCFF001NHV 309646 Michael Snyder, Stanford ba51fcef06dd40609aba751d017036f6 https://www.encodeproject.org/files/ENCFF001YIB/@@download/ENCFF001YIB.bed.gz mm9 released low read length, low read depth ENCFF224BDF bam unfiltered alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIL, ENCFF018NEO 1261108719 ENCODE Processing Pipeline e97baddfef064af39fd46474b79b2716 https://www.encodeproject.org/files/ENCFF224BDF/@@download/ENCFF224BDF.bam mm10 released low read length, low read depth ENCFF397CLT bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIL, ENCFF018NEO 742227762 ENCODE Processing Pipeline 229f2fcdca6c662d439ac21aa6c592a9 https://www.encodeproject.org/files/ENCFF397CLT/@@download/ENCFF397CLT.bam mm10 released low read length, low read depth ENCFF152HUN bam unfiltered alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIG, ENCFF018NEO 1200271333 ENCODE Processing Pipeline 6dfe9cc6f3d2fd895deaa77eca1a6af9 https://www.encodeproject.org/files/ENCFF152HUN/@@download/ENCFF152HUN.bam mm10 released low read length, low read depth ENCFF715HFI bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIG, ENCFF018NEO 678795791 ENCODE Processing Pipeline c3a09cd2667f0c242c0a825eb861d734 https://www.encodeproject.org/files/ENCFF715HFI/@@download/ENCFF715HFI.bam mm10 released low read length, low read depth ENCFF321OLG bigWig fold change over control ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF715HFI 239288627 ENCODE Processing Pipeline 284ff35beabaaaac7c0aa9ddfcea1c4f https://www.encodeproject.org/files/ENCFF321OLG/@@download/ENCFF321OLG.bigWig mm10 released low read length, low read depth ENCFF931WLI bigWig signal p-value ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF715HFI 242947669 ENCODE Processing Pipeline cf4cd3b9d3b53c91f3475bfd7e1787bd https://www.encodeproject.org/files/ENCFF931WLI/@@download/ENCFF931WLI.bigWig mm10 released low read length, low read depth ENCFF291IPD bigWig signal p-value ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF397CLT 237080192 ENCODE Processing Pipeline 82a5bd1290cbecb3d49b8ecf52069a3c https://www.encodeproject.org/files/ENCFF291IPD/@@download/ENCFF291IPD.bigWig mm10 released low read length, low read depth ENCFF489NLK bigWig signal p-value ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF397CLT, ENCFF715HFI 229518456 ENCODE Processing Pipeline f07654cfa481632900fd39c034f4c2a2 https://www.encodeproject.org/files/ENCFF489NLK/@@download/ENCFF489NLK.bigWig mm10 released low read length, low read depth ENCFF887GRQ bed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF397CLT, ENCFF715HFI 5550799 ENCODE Processing Pipeline a3b935f4f7a52d38d8dfde2aeadb6087 https://www.encodeproject.org/files/ENCFF887GRQ/@@download/ENCFF887GRQ.bed.gz mm10 released low read length, low read depth ENCFF870RZM bigWig fold change over control ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF397CLT 251505467 ENCODE Processing Pipeline 72be3631ab097b72f05068572905a3d0 https://www.encodeproject.org/files/ENCFF870RZM/@@download/ENCFF870RZM.bigWig mm10 released low read length, low read depth ENCFF544VSI bigWig fold change over control ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF397CLT, ENCFF715HFI 416805062 ENCODE Processing Pipeline 5229b3554f6bf4b67d174ba93a014448 https://www.encodeproject.org/files/ENCFF544VSI/@@download/ENCFF544VSI.bigWig mm10 released low read length, low read depth ENCFF563YXX bed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF715HFI 4813259 ENCODE Processing Pipeline c7b70fc643e6a1f26dd0817d0ee9aebf https://www.encodeproject.org/files/ENCFF563YXX/@@download/ENCFF563YXX.bed.gz mm10 released low read length, low read depth ENCFF908CAW bed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF397CLT 2906212 ENCODE Processing Pipeline 21277cf6da55a59990c76dd34ed074ec https://www.encodeproject.org/files/ENCFF908CAW/@@download/ENCFF908CAW.bed.gz mm10 released low read length, low read depth ENCFF124UVL bigBed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF563YXX 10431311 ENCODE Processing Pipeline 9fc25c3474f467b4e0341be04cf0ecda https://www.encodeproject.org/files/ENCFF124UVL/@@download/ENCFF124UVL.bigBed mm10 released low read length, low read depth ENCFF411YAY bigBed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF887GRQ 12936141 ENCODE Processing Pipeline ee84f068502c250dafc2be1fcf17ac99 https://www.encodeproject.org/files/ENCFF411YAY/@@download/ENCFF411YAY.bigBed mm10 released low read length, low read depth ENCFF035ELN bigBed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF908CAW 6082408 ENCODE Processing Pipeline 461467f4618c1f0e3e637af7f45f5821 https://www.encodeproject.org/files/ENCFF035ELN/@@download/ENCFF035ELN.bigBed mm10 released low read length, low read depth ENCFF144UNP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF220DKK 643927 ENCODE Processing Pipeline 7e074d84ff3b883042f3122459b08503 https://www.encodeproject.org/files/ENCFF144UNP/@@download/ENCFF144UNP.bigBed mm10 released low read length, low read depth ENCFF457CXR bed narrowPeak optimal idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF563YXX, ENCFF887GRQ, ENCFF908CAW 327634 ENCODE Processing Pipeline 4c1b07b9bc2d795612bcd4afb3474b55 https://www.encodeproject.org/files/ENCFF457CXR/@@download/ENCFF457CXR.bed.gz mm10 released low read length, low read depth ENCFF220DKK bed narrowPeak conservative idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF563YXX, ENCFF887GRQ, ENCFF908CAW 301376 ENCODE Processing Pipeline 765d6ec54e275eeb4431e92b7bf45a5c https://www.encodeproject.org/files/ENCFF220DKK/@@download/ENCFF220DKK.bed.gz mm10 released low read length, low read depth ENCFF461XYD bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF457CXR 687097 ENCODE Processing Pipeline 317a0c053f7011d8a1433db7f76b2775 https://www.encodeproject.org/files/ENCFF461XYD/@@download/ENCFF461XYD.bigBed mm10 released low read length, low read depth ENCFF001LLR bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LLY 885224901 Bing Ren, UCSD ea1db9b6b5e548783834e86919e5a64e https://www.encodeproject.org/files/ENCFF001LLR/@@download/ENCFF001LLR.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLO bigBed broadPeak peaks ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE ENCFF001YAK 502338 Bing Ren, UCSD 88bffe824cb934f889273603832c3f85 https://www.encodeproject.org/files/ENCFF001LLO/@@download/ENCFF001LLO.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLQ bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LLV 381991534 Bing Ren, UCSD 308ec776bbeed993133d922d91c54d6d https://www.encodeproject.org/files/ENCFF001LLQ/@@download/ENCFF001LLQ.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLT bigWig signal ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 57513472 Bing Ren, UCSD 3f51ebd80919f3dce9e25edfbc9fa2ec https://www.encodeproject.org/files/ENCFF001LLT/@@download/ENCFF001LLT.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLV fastq reads ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 379068820 Bing Ren, UCSD 8b30aab1e0b73212012690f6b39899a8 https://www.encodeproject.org/files/ENCFF001LLV/@@download/ENCFF001LLV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KLI/ archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLY fastq reads ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 914808631 Bing Ren, UCSD f9d59cca1ae133f7f6289c5a4951ece5 https://www.encodeproject.org/files/ENCFF001LLY/@@download/ENCFF001LLY.fastq.gz Illumina HiSeq 2000 /files/ENCFF044CWG/ archived mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001YAK bed broadPeak peaks ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 371652 Bing Ren, UCSD 541d9264f358bc568d3e1154a29ca690 https://www.encodeproject.org/files/ENCFF001YAK/@@download/ENCFF001YAK.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF104TPG bam unfiltered alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LLV, ENCFF018NEO 400434569 ENCODE Processing Pipeline b74bc8d595373a32f835709d1e416abf https://www.encodeproject.org/files/ENCFF104TPG/@@download/ENCFF104TPG.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF600RDL bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LLV, ENCFF018NEO 177489057 ENCODE Processing Pipeline 2b7d831bb64e01bc1ea7dc5d441ceac1 https://www.encodeproject.org/files/ENCFF600RDL/@@download/ENCFF600RDL.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF428ARW bam unfiltered alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LLY, ENCFF018NEO 915213557 ENCODE Processing Pipeline 0e6fe08a54a0b2194ef0f681ed414a17 https://www.encodeproject.org/files/ENCFF428ARW/@@download/ENCFF428ARW.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF197ZXT bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LLY, ENCFF018NEO 220125330 ENCODE Processing Pipeline a5ee6d7cfd2a22f1df51cf03bbbc974b https://www.encodeproject.org/files/ENCFF197ZXT/@@download/ENCFF197ZXT.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001NFL bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NGC 303909820 Michael Snyder, Stanford a6cfc568cea8c4224f858e0981a89fd3 https://www.encodeproject.org/files/ENCFF001NFL/@@download/ENCFF001NFL.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NFM bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NGO 299309498 Michael Snyder, Stanford dfa62ad0d5a1fc72acd71c1116dfda47 https://www.encodeproject.org/files/ENCFF001NFM/@@download/ENCFF001NFM.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NFN bigBed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHU 1029843 Michael Snyder, Stanford e421aac28339f6e434402ffa90919a0c https://www.encodeproject.org/files/ENCFF001NFN/@@download/ENCFF001NFN.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NFR bigWig signal ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFL, ENCFF001NFM 255078538 Michael Snyder, Stanford 84b40f360e4a058311bf97b404627745 https://www.encodeproject.org/files/ENCFF001NFR/@@download/ENCFF001NFR.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGC fastq reads ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1096763904 Michael Snyder, Stanford 251314891177bc2b02cc871f1679e356 https://www.encodeproject.org/files/ENCFF001NGC/@@download/ENCFF001NGC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGO fastq reads ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 995567119 Michael Snyder, Stanford e8ffa801aab6d94b79165263aea8087d https://www.encodeproject.org/files/ENCFF001NGO/@@download/ENCFF001NGO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001YHU bed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFL, ENCFF001NFM 413695 Michael Snyder, Stanford ae1e2ce02d8df7f7aab72a6f062b850c https://www.encodeproject.org/files/ENCFF001YHU/@@download/ENCFF001YHU.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF726ILJ bam unfiltered alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGO, ENCFF018NEO 1102128563 ENCODE Processing Pipeline ed6e020345cb40095debe993af1945f0 https://www.encodeproject.org/files/ENCFF726ILJ/@@download/ENCFF726ILJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF644VXF bam unfiltered alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGC, ENCFF018NEO 1234250654 ENCODE Processing Pipeline 0b09ed6f6a54116e95fd421e98767af4 https://www.encodeproject.org/files/ENCFF644VXF/@@download/ENCFF644VXF.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF271SRD bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGO, ENCFF018NEO 604624795 ENCODE Processing Pipeline 8354f6ab2ca30740b13479953b9a2151 https://www.encodeproject.org/files/ENCFF271SRD/@@download/ENCFF271SRD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF006JXP bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGC, ENCFF018NEO 667604428 ENCODE Processing Pipeline 3698b803fc362be8ebd058fdee8c483f https://www.encodeproject.org/files/ENCFF006JXP/@@download/ENCFF006JXP.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF940MBK bigWig signal p-value ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF006JXP, ENCFF339ZWC 242379023 ENCODE Processing Pipeline e39dac99d27eb8630510199a77c54f1f https://www.encodeproject.org/files/ENCFF940MBK/@@download/ENCFF940MBK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF295ZFU bigWig signal p-value ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF006JXP, ENCFF271SRD, ENCFF339ZWC 228262716 ENCODE Processing Pipeline d5bbf39e4ebd305ae8087e13afe9ed8d https://www.encodeproject.org/files/ENCFF295ZFU/@@download/ENCFF295ZFU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF534KNL bigWig fold change over control ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF006JXP, ENCFF339ZWC 239502715 ENCODE Processing Pipeline 79c8ec81b06b89e48d2f9c381ae802b8 https://www.encodeproject.org/files/ENCFF534KNL/@@download/ENCFF534KNL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF453LPG bigWig signal p-value ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF271SRD, ENCFF339ZWC 235792301 ENCODE Processing Pipeline 0e9c2038e1d9f9799b324a4eb7703356 https://www.encodeproject.org/files/ENCFF453LPG/@@download/ENCFF453LPG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF962BGJ bed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF271SRD, ENCFF339ZWC 5250447 ENCODE Processing Pipeline 3f6657835ee3d9af684b4a175a500d5d https://www.encodeproject.org/files/ENCFF962BGJ/@@download/ENCFF962BGJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF259VHD bigWig fold change over control ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF271SRD, ENCFF339ZWC 216919763 ENCODE Processing Pipeline efd66d235a99e5eab38b1df1a5c39571 https://www.encodeproject.org/files/ENCFF259VHD/@@download/ENCFF259VHD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF562UOS bigWig fold change over control ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF006JXP, ENCFF271SRD, ENCFF339ZWC 386697703 ENCODE Processing Pipeline daabd35f095f8b93526350882ed6c94a https://www.encodeproject.org/files/ENCFF562UOS/@@download/ENCFF562UOS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF160KXR bed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF006JXP, ENCFF339ZWC 5159168 ENCODE Processing Pipeline 329a156c8f153222595ab105f5ef672e https://www.encodeproject.org/files/ENCFF160KXR/@@download/ENCFF160KXR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF540OBG bigBed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF160KXR 12669617 ENCODE Processing Pipeline 3f50a5d7087665f96643b28a20c36ab2 https://www.encodeproject.org/files/ENCFF540OBG/@@download/ENCFF540OBG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF434IOC bed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF006JXP, ENCFF271SRD, ENCFF339ZWC 5828986 ENCODE Processing Pipeline b87e050dd66fe799cb84f45f696567de https://www.encodeproject.org/files/ENCFF434IOC/@@download/ENCFF434IOC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF093QJN bigBed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF962BGJ 12611757 ENCODE Processing Pipeline d0e64f1d6b17863a4816399ac045ff6e https://www.encodeproject.org/files/ENCFF093QJN/@@download/ENCFF093QJN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF207USO bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF994LFX 1090366 ENCODE Processing Pipeline 10d76504f09478a02de4a3552113312f https://www.encodeproject.org/files/ENCFF207USO/@@download/ENCFF207USO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF474FPJ bigBed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF434IOC 12952178 ENCODE Processing Pipeline daa751e13a11fbab492d4442e7751f12 https://www.encodeproject.org/files/ENCFF474FPJ/@@download/ENCFF474FPJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF994LFX bed narrowPeak conservative idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF160KXR, ENCFF434IOC, ENCFF547MET, ENCFF962BGJ 502052 ENCODE Processing Pipeline 11c0cf1314b04c7df13c307c8a4a730a https://www.encodeproject.org/files/ENCFF994LFX/@@download/ENCFF994LFX.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF130OBI bed narrowPeak optimal idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF160KXR, ENCFF434IOC, ENCFF547MET, ENCFF962BGJ 555360 ENCODE Processing Pipeline 4cdb840a799631505bd91fd35fb41252 https://www.encodeproject.org/files/ENCFF130OBI/@@download/ENCFF130OBI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF033DSA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF130OBI 1186120 ENCODE Processing Pipeline 02409b73c99c0bf1552708a53cfad2d1 https://www.encodeproject.org/files/ENCFF033DSA/@@download/ENCFF033DSA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF001MLW bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MMD 1818337911 Ross Hardison, PennState de5d4629c0ec07d258c596f8da39ddb2 https://www.encodeproject.org/files/ENCFF001MLW/@@download/ENCFF001MLW.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MLX bigBed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEK 68476 Ross Hardison, PennState 65ead4248bc442678504f89cc9342a3d https://www.encodeproject.org/files/ENCFF001MLX/@@download/ENCFF001MLX.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MLZ bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MMH 3513802317 Ross Hardison, PennState 798e9c9341b47f11414c669e194c786e https://www.encodeproject.org/files/ENCFF001MLZ/@@download/ENCFF001MLZ.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMA bigBed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEL 106950 Ross Hardison, PennState 43854c2551216018b349f3b4cd9477db https://www.encodeproject.org/files/ENCFF001MMA/@@download/ENCFF001MMA.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMB bigBed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEM 64045 Ross Hardison, PennState 83c9de53074d29211764fba838c30c85 https://www.encodeproject.org/files/ENCFF001MMB/@@download/ENCFF001MMB.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMC bigWig signal ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2262411649 Ross Hardison, PennState 410fcae895710fa0e6ebe1e2912fa499 https://www.encodeproject.org/files/ENCFF001MMC/@@download/ENCFF001MMC.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MMD fastq reads ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1447608138 Ross Hardison, PennState 9a16d0d5e4cfc78189f04a81e48afcd0 https://www.encodeproject.org/files/ENCFF001MMD/@@download/ENCFF001MMD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLS/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms ENCFF001MME bigWig signal ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 4458300767 Ross Hardison, PennState 11392f02acf54b2c08db65b3336a78c4 https://www.encodeproject.org/files/ENCFF001MME/@@download/ENCFF001MME.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MMF bigWig signal ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 4861822761 Ross Hardison, PennState 845899d7cc22449de83b77a9b53b2d50 https://www.encodeproject.org/files/ENCFF001MMF/@@download/ENCFF001MMF.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MMH fastq reads ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 3056317484 Ross Hardison, PennState 5c858d8a6d5ea1e35d4ad3872a435e8a https://www.encodeproject.org/files/ENCFF001MMH/@@download/ENCFF001MMH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released low read length, mixed read lengths, inconsistent platforms ENCFF001YEK bed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 15696 Ross Hardison, PennState 44344e161b113ad887f55677da75a14c https://www.encodeproject.org/files/ENCFF001YEK/@@download/ENCFF001YEK.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YEL bed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 22792 Ross Hardison, PennState ebcce043ffef64122950292d9fd64ff3 https://www.encodeproject.org/files/ENCFF001YEL/@@download/ENCFF001YEL.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YEM bed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 13226 Ross Hardison, PennState 650c8c2e98de8efa474db29726ce1593 https://www.encodeproject.org/files/ENCFF001YEM/@@download/ENCFF001YEM.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF804CVY bam unfiltered alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MMH, ENCFF018NEO 2816608215 ENCODE Processing Pipeline 9541418a37c0dbdfe8279e6ff6dcbff4 https://www.encodeproject.org/files/ENCFF804CVY/@@download/ENCFF804CVY.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF532DSC bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MMD, ENCFF018NEO 1136376170 ENCODE Processing Pipeline d64fd74e5f02c0f445de727bc906e970 https://www.encodeproject.org/files/ENCFF532DSC/@@download/ENCFF532DSC.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF334HQQ bam unfiltered alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MMD, ENCFF018NEO 1730786421 ENCODE Processing Pipeline 4122afc8afc66ad4c824b25325886e49 https://www.encodeproject.org/files/ENCFF334HQQ/@@download/ENCFF334HQQ.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF294OQM bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MMH, ENCFF018NEO 1881495435 ENCODE Processing Pipeline 2fc388d04d25b482ad11a1b44eff8744 https://www.encodeproject.org/files/ENCFF294OQM/@@download/ENCFF294OQM.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF289RKB bigWig signal p-value ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 883328409 ENCODE Processing Pipeline 3ac6f2fb846ba2623c2aae7d348751d7 https://www.encodeproject.org/files/ENCFF289RKB/@@download/ENCFF289RKB.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF982TPY bigWig signal p-value ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF294OQM, ENCFF318FKF, ENCFF867VYO 1132920189 ENCODE Processing Pipeline 521a8dcfd691ca1cccc6a8d71fbe3e2c https://www.encodeproject.org/files/ENCFF982TPY/@@download/ENCFF982TPY.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF406NLD bigWig signal p-value ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF294OQM, ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 1162442491 ENCODE Processing Pipeline 59641e39e3f8df4fb1e33fb69ff46bd6 https://www.encodeproject.org/files/ENCFF406NLD/@@download/ENCFF406NLD.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF409BBM bigWig fold change over control ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 888123324 ENCODE Processing Pipeline ad32994082ce70162dd622630615c9b3 https://www.encodeproject.org/files/ENCFF409BBM/@@download/ENCFF409BBM.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF720OXO bigWig fold change over control ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF294OQM, ENCFF318FKF, ENCFF867VYO 1193312624 ENCODE Processing Pipeline e4e6b6f34b1363bc24268fcc6fbb9eb3 https://www.encodeproject.org/files/ENCFF720OXO/@@download/ENCFF720OXO.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF636WAD bigWig fold change over control ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF294OQM, ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 1509103026 ENCODE Processing Pipeline 9dead86bf9be1626f1d3b0b8282136f8 https://www.encodeproject.org/files/ENCFF636WAD/@@download/ENCFF636WAD.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF207KAT bigBed narrowPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF449JJN 11356201 ENCODE Processing Pipeline b48d7631c95214bc3897eff899f3a4d1 https://www.encodeproject.org/files/ENCFF207KAT/@@download/ENCFF207KAT.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF763OTD bigBed narrowPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF346ZZZ 11457438 ENCODE Processing Pipeline 2ef511c8d4723a14ca732a9ead6f1255 https://www.encodeproject.org/files/ENCFF763OTD/@@download/ENCFF763OTD.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF505PYY bigBed narrowPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF698CKE 11295983 ENCODE Processing Pipeline 05a42561fd34bd98234380fc3c76286e https://www.encodeproject.org/files/ENCFF505PYY/@@download/ENCFF505PYY.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF353FXM bed narrowPeak conservative idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF346ZZZ, ENCFF449JJN, ENCFF547MET, ENCFF698CKE 3174 ENCODE Processing Pipeline e4e6042473473e1c10f980ba5f24fca2 https://www.encodeproject.org/files/ENCFF353FXM/@@download/ENCFF353FXM.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF660BWP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF353FXM 79374 ENCODE Processing Pipeline 6be91f6b58b563fe6f2c85adfe417494 https://www.encodeproject.org/files/ENCFF660BWP/@@download/ENCFF660BWP.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF449JJN bed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 6114844 ENCODE Processing Pipeline f8f4d38cd336636dc4abd2c253bb48e7 https://www.encodeproject.org/files/ENCFF449JJN/@@download/ENCFF449JJN.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF346ZZZ bed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF294OQM, ENCFF318FKF, ENCFF867VYO 6243598 ENCODE Processing Pipeline bdf2d13812c130aba4b584c7cae64c5e https://www.encodeproject.org/files/ENCFF346ZZZ/@@download/ENCFF346ZZZ.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF698CKE bed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF294OQM, ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 6935435 ENCODE Processing Pipeline 5e9e1fb3d2c25ee12f2ac293d8ea4e82 https://www.encodeproject.org/files/ENCFF698CKE/@@download/ENCFF698CKE.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF692NRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF333ULW 49359 ENCODE Processing Pipeline e5f8e077c931c6ded93fb477b6a2db31 https://www.encodeproject.org/files/ENCFF692NRR/@@download/ENCFF692NRR.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF333ULW bed narrowPeak optimal idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF346ZZZ, ENCFF449JJN, ENCFF547MET, ENCFF698CKE 3479 ENCODE Processing Pipeline 5ab0e8fea84a982a46894a0495783cc6 https://www.encodeproject.org/files/ENCFF333ULW/@@download/ENCFF333ULW.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF001LQQ bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LQY 553618471 Bing Ren, UCSD 565290d2c1af09a65de30f4abcaa472e https://www.encodeproject.org/files/ENCFF001LQQ/@@download/ENCFF001LQQ.bam mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQS bigBed broadPeak peaks ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAY 464421 Bing Ren, UCSD 2c821a005a29886dfda31c7e20896ae2 https://www.encodeproject.org/files/ENCFF001LQS/@@download/ENCFF001LQS.bigBed mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQT bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LRE 579883819 Bing Ren, UCSD f17ee9e012d6f5a5e2d8a711c7e49da0 https://www.encodeproject.org/files/ENCFF001LQT/@@download/ENCFF001LQT.bam mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQX bigWig signal ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LQQ, ENCFF001LQT 54492570 Bing Ren, UCSD 92133721884bb65a9a82a4e7e7008b98 https://www.encodeproject.org/files/ENCFF001LQX/@@download/ENCFF001LQX.bigWig mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQY fastq reads ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 30 single-ended 526337920 Bing Ren, UCSD 8948a3cedaaaf925cd4fcf3543189c7f https://www.encodeproject.org/files/ENCFF001LQY/@@download/ENCFF001LQY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LRE fastq reads ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 30 single-ended 612267265 Bing Ren, UCSD 3c7ecddc91aeddb64776ac104667427d https://www.encodeproject.org/files/ENCFF001LRE/@@download/ENCFF001LRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KWE/ released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001YAY bed broadPeak peaks ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LQQ, ENCFF001LQT 323502 Bing Ren, UCSD 016f8c507fc27e2063b8dd6f5617402f https://www.encodeproject.org/files/ENCFF001YAY/@@download/ENCFF001YAY.bed.gz mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF497WZO bam unfiltered alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 560518743 ENCODE Processing Pipeline 77b9eecd6a1886d0f63ea8675289392b https://www.encodeproject.org/files/ENCFF497WZO/@@download/ENCFF497WZO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF581CEH bam unfiltered alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 607380921 ENCODE Processing Pipeline 5ea99b2f0c1b2a07430a8e257f20f5e7 https://www.encodeproject.org/files/ENCFF581CEH/@@download/ENCFF581CEH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF137QSX bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 55417723 ENCODE Processing Pipeline f3528de15ec5be78e7e549d22878b10b https://www.encodeproject.org/files/ENCFF137QSX/@@download/ENCFF137QSX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF409DKD bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 356592575 ENCODE Processing Pipeline 9d0fe55ecb2328ebcb7afb0034933019 https://www.encodeproject.org/files/ENCFF409DKD/@@download/ENCFF409DKD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LPX bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQH 779560724 Bing Ren, UCSD 70c73b61360a9ed40d2e4131035e7c65 https://www.encodeproject.org/files/ENCFF001LPX/@@download/ENCFF001LPX.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001LQB bigBed broadPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAW 320142 Bing Ren, UCSD f212e2bcfa9b18d7c1d9b4f7b535b3e6 https://www.encodeproject.org/files/ENCFF001LQB/@@download/ENCFF001LQB.bigBed mm9 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001LQC bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQI 1050668299 Bing Ren, UCSD 62a6544d6598ba24c47d006afd7f5bde https://www.encodeproject.org/files/ENCFF001LQC/@@download/ENCFF001LQC.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001LQD bigWig signal ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPX, ENCFF001LQC 63278311 Bing Ren, UCSD 36c1988fdf66619f37ad9af1571faf01 https://www.encodeproject.org/files/ENCFF001LQD/@@download/ENCFF001LQD.bigWig mm9 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001LQH fastq reads ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 356110106 Bing Ren, UCSD fd5bcc1d64b81df01996b75a81a33d1f https://www.encodeproject.org/files/ENCFF001LQH/@@download/ENCFF001LQH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KUJ/ released mild to moderate bottlenecking, mixed read lengths, inconsistent control read length, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001LQI fastq reads ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1482667027 Bing Ren, UCSD b912f261dd2a6b92f38de945fc532672 https://www.encodeproject.org/files/ENCFF001LQI/@@download/ENCFF001LQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001YAW bed broadPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPX, ENCFF001LQC 202020 Bing Ren, UCSD 611038bfb280a1a93806fee8a98160c1 https://www.encodeproject.org/files/ENCFF001YAW/@@download/ENCFF001YAW.bed.gz mm9 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF455AXI bam unfiltered alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQH, ENCFF018NEO 383881631 ENCODE Processing Pipeline c8f95447fe78bd5a3fd8d530ae0a2441 https://www.encodeproject.org/files/ENCFF455AXI/@@download/ENCFF455AXI.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF870WCT bam unfiltered alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 1610521117 ENCODE Processing Pipeline d17a798016032389794b019ef2af89a9 https://www.encodeproject.org/files/ENCFF870WCT/@@download/ENCFF870WCT.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF835GIQ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LQH, ENCFF018NEO 145463677 ENCODE Processing Pipeline 82af3942a86f7569f5580282181702e3 https://www.encodeproject.org/files/ENCFF835GIQ/@@download/ENCFF835GIQ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF023ESZ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 934355228 ENCODE Processing Pipeline 81837bcd74b867e1eadb35adde0efa69 https://www.encodeproject.org/files/ENCFF023ESZ/@@download/ENCFF023ESZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF131XVC bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 232355475 ENCODE Processing Pipeline 7f1ce8756996a14e313b7ee3d94f593e https://www.encodeproject.org/files/ENCFF131XVC/@@download/ENCFF131XVC.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF810GMY bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 579691047 ENCODE Processing Pipeline 47b19033044eb1fca4d3f2273770d6b9 https://www.encodeproject.org/files/ENCFF810GMY/@@download/ENCFF810GMY.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF075YOP bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 585476974 ENCODE Processing Pipeline 90d20cad3afd5819bb8ff3c27e2d265a https://www.encodeproject.org/files/ENCFF075YOP/@@download/ENCFF075YOP.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF008DXY bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 466738806 ENCODE Processing Pipeline 3aead480e3932a1e7a0dc72467e07ce7 https://www.encodeproject.org/files/ENCFF008DXY/@@download/ENCFF008DXY.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF039YHD bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 78627966 ENCODE Processing Pipeline 6ed10e400fef1fa927befb7b90f78b65 https://www.encodeproject.org/files/ENCFF039YHD/@@download/ENCFF039YHD.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF472ZGZ bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 531667358 ENCODE Processing Pipeline 98319b0c39ad0590c90b8802b6fb59ea https://www.encodeproject.org/files/ENCFF472ZGZ/@@download/ENCFF472ZGZ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF893SUP bed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 1038864 ENCODE Processing Pipeline 63f8e08a553571029a12cf82af08bfc2 https://www.encodeproject.org/files/ENCFF893SUP/@@download/ENCFF893SUP.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF715VNT bed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 6236698 ENCODE Processing Pipeline f3349fb8612918bdbb5bbb6dee00cce5 https://www.encodeproject.org/files/ENCFF715VNT/@@download/ENCFF715VNT.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF023IJI bed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 6219097 ENCODE Processing Pipeline 5f1ebedb3062247909a335ddcafb6efc https://www.encodeproject.org/files/ENCFF023IJI/@@download/ENCFF023IJI.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF924WEU bigBed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF893SUP 2385482 ENCODE Processing Pipeline 9acc0dc5c2e39f79004b8d9b649e5053 https://www.encodeproject.org/files/ENCFF924WEU/@@download/ENCFF924WEU.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF805ZHC bigBed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023IJI 13271752 ENCODE Processing Pipeline 7c62447fcb12476bbb127994344b5a0b https://www.encodeproject.org/files/ENCFF805ZHC/@@download/ENCFF805ZHC.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF647ODB bigBed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF715VNT 13362918 ENCODE Processing Pipeline 3796c69fdec151cd7d771030cede1a92 https://www.encodeproject.org/files/ENCFF647ODB/@@download/ENCFF647ODB.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF012YET bed narrowPeak conservative idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023IJI, ENCFF547MET, ENCFF715VNT, ENCFF893SUP 202259 ENCODE Processing Pipeline 88591adf76d812bf3ab12fcdf6267e79 https://www.encodeproject.org/files/ENCFF012YET/@@download/ENCFF012YET.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF716WCD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF012YET 459930 ENCODE Processing Pipeline 216cc16f2823e6ecf1ce51e0214bfd03 https://www.encodeproject.org/files/ENCFF716WCD/@@download/ENCFF716WCD.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF609DMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF319LOC 864358 ENCODE Processing Pipeline 1595fea2d66eb01dce0cc44a8d83322b https://www.encodeproject.org/files/ENCFF609DMT/@@download/ENCFF609DMT.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF319LOC bed narrowPeak optimal idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023IJI, ENCFF547MET, ENCFF715VNT, ENCFF893SUP 486999 ENCODE Processing Pipeline eed84a0b1641898c5b088f213a844092 https://www.encodeproject.org/files/ENCFF319LOC/@@download/ENCFF319LOC.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, moderate library complexity, inconsistent platforms insufficient replicate concordance, insufficient read length extremely low read depth ENCFF001NQC bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NQE 406116062 Michael Snyder, Stanford f2744bfe1af81c45e223a5b64c56110b https://www.encodeproject.org/files/ENCFF001NQC/@@download/ENCFF001NQC.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQD bigBed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJF 985936 Michael Snyder, Stanford ca2edccd95c29c5bb98119e7c1121453 https://www.encodeproject.org/files/ENCFF001NQD/@@download/ENCFF001NQD.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQE fastq reads ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 818690886 Michael Snyder, Stanford 1171f81073d78f04289d02421ca9b2e9 https://www.encodeproject.org/files/ENCFF001NQE/@@download/ENCFF001NQE.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQH fastq reads ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1148847464 Michael Snyder, Stanford 74ec5d86b93eff416d65094628ad5e37 https://www.encodeproject.org/files/ENCFF001NQH/@@download/ENCFF001NQH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQJ bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NQH 526260541 Michael Snyder, Stanford 8874c630a1a3a4b32fe2441fba6ad455 https://www.encodeproject.org/files/ENCFF001NQJ/@@download/ENCFF001NQJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NQK bigWig signal ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NQC, ENCFF001NQJ 347650911 Michael Snyder, Stanford 8c2c718b928c0a8c7a852e6e4000f45b https://www.encodeproject.org/files/ENCFF001NQK/@@download/ENCFF001NQK.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YJF bed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NQC, ENCFF001NQJ 360877 Michael Snyder, Stanford 432eb35c859149b1db13bf6e6af14f9b https://www.encodeproject.org/files/ENCFF001YJF/@@download/ENCFF001YJF.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF790QYJ bam unfiltered alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NQE, ENCFF018NEO 893040200 ENCODE Processing Pipeline b83623bb754d92626ffb49b67de2ebe4 https://www.encodeproject.org/files/ENCFF790QYJ/@@download/ENCFF790QYJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF756GBG bam unfiltered alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NQH, ENCFF018NEO 1272980362 ENCODE Processing Pipeline 3fd44df1f54f79c5f6d0c8c241710c93 https://www.encodeproject.org/files/ENCFF756GBG/@@download/ENCFF756GBG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF643WRW bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NQE, ENCFF018NEO 567582897 ENCODE Processing Pipeline c413884bf99de47fdaa5d87fbb87d335 https://www.encodeproject.org/files/ENCFF643WRW/@@download/ENCFF643WRW.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF658OJL bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NQH, ENCFF018NEO 840000890 ENCODE Processing Pipeline 81b0d93f4d1a9eccb15e48ded261b63e https://www.encodeproject.org/files/ENCFF658OJL/@@download/ENCFF658OJL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF525ZGM bigWig fold change over control ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF643WRW, ENCFF658OJL 501523047 ENCODE Processing Pipeline cb22093dc27ff7e2b38ef7cf51399eb9 https://www.encodeproject.org/files/ENCFF525ZGM/@@download/ENCFF525ZGM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF596CWB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF252WGE 889257 ENCODE Processing Pipeline a39f9e368a3d60de27c8109ce4f27e99 https://www.encodeproject.org/files/ENCFF596CWB/@@download/ENCFF596CWB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF567VSU bed narrowPeak optimal idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017UZY, ENCFF137KKN, ENCFF547MET, ENCFF701CYM 510153 ENCODE Processing Pipeline 39172ed0f47af19a093793e5bbd26c8c https://www.encodeproject.org/files/ENCFF567VSU/@@download/ENCFF567VSU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF267VAU bigWig signal p-value ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF643WRW, ENCFF658OJL 291301637 ENCODE Processing Pipeline 22d386dc994aa98b3b03ca1532b7d149 https://www.encodeproject.org/files/ENCFF267VAU/@@download/ENCFF267VAU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF969CVC bigWig signal p-value ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF643WRW 317928882 ENCODE Processing Pipeline 019f35da2186463543b981c0ab6c6d74 https://www.encodeproject.org/files/ENCFF969CVC/@@download/ENCFF969CVC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF455LEA bigBed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF137KKN 12747768 ENCODE Processing Pipeline 29196a6526f2600cc2bf2f98325e6943 https://www.encodeproject.org/files/ENCFF455LEA/@@download/ENCFF455LEA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF701CYM bed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF658OJL 5410123 ENCODE Processing Pipeline 35499ea9896e4ccfe7773a5ea44660a5 https://www.encodeproject.org/files/ENCFF701CYM/@@download/ENCFF701CYM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF017UZY bed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF643WRW, ENCFF658OJL 6189608 ENCODE Processing Pipeline 2e2b12d5dd429d935cea824f8c3cb9a8 https://www.encodeproject.org/files/ENCFF017UZY/@@download/ENCFF017UZY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF252WGE bed narrowPeak conservative idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017UZY, ENCFF137KKN, ENCFF547MET, ENCFF701CYM 467372 ENCODE Processing Pipeline 428fc23db19acf576cde0a7894ddcbcd https://www.encodeproject.org/files/ENCFF252WGE/@@download/ENCFF252WGE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF941QHO bigWig signal p-value ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF658OJL 304497480 ENCODE Processing Pipeline adb21107f2338b5533a843bd7ffd642d https://www.encodeproject.org/files/ENCFF941QHO/@@download/ENCFF941QHO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF157KCK bigWig fold change over control ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF643WRW 259276245 ENCODE Processing Pipeline 110373176749b5e3296333afd71430de https://www.encodeproject.org/files/ENCFF157KCK/@@download/ENCFF157KCK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF921WIX bigWig fold change over control ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF658OJL 333880555 ENCODE Processing Pipeline 7737c664ddf4677042143fc1d75c4773 https://www.encodeproject.org/files/ENCFF921WIX/@@download/ENCFF921WIX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF137KKN bed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF643WRW 5398527 ENCODE Processing Pipeline f1355316063fc8bec7ddc3c73531c95d https://www.encodeproject.org/files/ENCFF137KKN/@@download/ENCFF137KKN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF056VAL bigBed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017UZY 13088402 ENCODE Processing Pipeline 770579661feaf23aba481ad4a9a26748 https://www.encodeproject.org/files/ENCFF056VAL/@@download/ENCFF056VAL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF396BUI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF567VSU 951922 ENCODE Processing Pipeline 94fb2d5cfc4e3df6804b2696f4a0ec20 https://www.encodeproject.org/files/ENCFF396BUI/@@download/ENCFF396BUI.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF025ZPM bigBed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF701CYM 12822243 ENCODE Processing Pipeline 29aa3fea2b809621f075b6e5cadf78f0 https://www.encodeproject.org/files/ENCFF025ZPM/@@download/ENCFF025ZPM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001LSD bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSJ 155611160 Bing Ren, UCSD 151dab0bf72d60b7a9204b3432dcf485 https://www.encodeproject.org/files/ENCFF001LSD/@@download/ENCFF001LSD.bam mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSE bigBed broadPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBC 868107 Bing Ren, UCSD 63f2b0ab0504577bfaae337831d763fb https://www.encodeproject.org/files/ENCFF001LSE/@@download/ENCFF001LSE.bigBed mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LSL 381352971 Bing Ren, UCSD 218b267406a96d8c64afb832985cfb44 https://www.encodeproject.org/files/ENCFF001LSF/@@download/ENCFF001LSF.bam mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSG bigWig signal ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSD, ENCFF001LSF 49026047 Bing Ren, UCSD 67e38082fc30db952dcfc66c672ce6ed https://www.encodeproject.org/files/ENCFF001LSG/@@download/ENCFF001LSG.bigWig mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSJ fastq reads ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 256034181 Bing Ren, UCSD 6db797262ef5c927e52b6891089c98d1 https://www.encodeproject.org/files/ENCFF001LSJ/@@download/ENCFF001LSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSL fastq reads ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 526849908 Bing Ren, UCSD 4bacf9cb69bbb97d7cb747def245f211 https://www.encodeproject.org/files/ENCFF001LSL/@@download/ENCFF001LSL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001YBC bed broadPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSD, ENCFF001LSF 608534 Bing Ren, UCSD f03daaae347d6a4f519fb3e9e4e63bfa https://www.encodeproject.org/files/ENCFF001YBC/@@download/ENCFF001YBC.bed.gz mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF686OYA bam unfiltered alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 557384856 ENCODE Processing Pipeline c4ddccf032c14aa02e8c72bef7c73f4f https://www.encodeproject.org/files/ENCFF686OYA/@@download/ENCFF686OYA.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF782KAP bam unfiltered alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 241116017 ENCODE Processing Pipeline a84f9b47e2b9c23c66816108a9113f11 https://www.encodeproject.org/files/ENCFF782KAP/@@download/ENCFF782KAP.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF400HUF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 84582263 ENCODE Processing Pipeline 18413e52acf78c1e2555cf61a82f5702 https://www.encodeproject.org/files/ENCFF400HUF/@@download/ENCFF400HUF.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF757SUN bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 308947255 ENCODE Processing Pipeline 5f4d44da85b63066d46815cf08cfe33c https://www.encodeproject.org/files/ENCFF757SUN/@@download/ENCFF757SUN.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF184TYI bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 45584077 ENCODE Processing Pipeline d691855abc50935d1014219b09c22fc7 https://www.encodeproject.org/files/ENCFF184TYI/@@download/ENCFF184TYI.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF310MUQ bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 312675789 ENCODE Processing Pipeline d81f537d870212dc7ada59505ec40d5e https://www.encodeproject.org/files/ENCFF310MUQ/@@download/ENCFF310MUQ.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF897WQO bed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 5711799 ENCODE Processing Pipeline 9a9e92b484694500b117a595a232a01a https://www.encodeproject.org/files/ENCFF897WQO/@@download/ENCFF897WQO.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF640BHN bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 166296985 ENCODE Processing Pipeline 21e6feca54ec9bbe56154cde75ae16d9 https://www.encodeproject.org/files/ENCFF640BHN/@@download/ENCFF640BHN.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF243FBE bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 236163028 ENCODE Processing Pipeline 19c47b2664916493a3a8dcb7ebec68d0 https://www.encodeproject.org/files/ENCFF243FBE/@@download/ENCFF243FBE.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF036INA bed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 1626398 ENCODE Processing Pipeline 2028512c32941419556274ae692d32ce https://www.encodeproject.org/files/ENCFF036INA/@@download/ENCFF036INA.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF143XUK bigBed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF897WQO 12674520 ENCODE Processing Pipeline 816473f30ae818e0b357241e1f21bf1d https://www.encodeproject.org/files/ENCFF143XUK/@@download/ENCFF143XUK.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF639STL bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 208684836 ENCODE Processing Pipeline b0d6793a59a8ea6f3ac8aff8af2e19f4 https://www.encodeproject.org/files/ENCFF639STL/@@download/ENCFF639STL.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF812MEX bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF364YJV 483850 ENCODE Processing Pipeline 861a593e8f5cbe2a9c296dbe88e1f374 https://www.encodeproject.org/files/ENCFF812MEX/@@download/ENCFF812MEX.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF526EZI bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 143279572 ENCODE Processing Pipeline 52ed316e83e133bd59883552f6bee7f0 https://www.encodeproject.org/files/ENCFF526EZI/@@download/ENCFF526EZI.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF551RNB bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF714WDP 582600 ENCODE Processing Pipeline 58ed4bf8d8280fe122dac9f7b6bf6883 https://www.encodeproject.org/files/ENCFF551RNB/@@download/ENCFF551RNB.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF659CTO bed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 4994438 ENCODE Processing Pipeline 3f753996c2644f87bb31325fefed53ef https://www.encodeproject.org/files/ENCFF659CTO/@@download/ENCFF659CTO.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF901FUH bigBed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF036INA 3651719 ENCODE Processing Pipeline d82f4bed6521d08f7e31b045ed427464 https://www.encodeproject.org/files/ENCFF901FUH/@@download/ENCFF901FUH.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF364YJV bed narrowPeak conservative idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF036INA, ENCFF547MET, ENCFF659CTO, ENCFF897WQO 250763 ENCODE Processing Pipeline b082e067cd1f8a1ae68e36aec12e6e2c https://www.encodeproject.org/files/ENCFF364YJV/@@download/ENCFF364YJV.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF714WDP bed narrowPeak optimal idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF036INA, ENCFF547MET, ENCFF659CTO, ENCFF897WQO 326073 ENCODE Processing Pipeline 61e2493535ae361665ef23aedbd29310 https://www.encodeproject.org/files/ENCFF714WDP/@@download/ENCFF714WDP.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF755OXB bigBed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF659CTO 12383215 ENCODE Processing Pipeline 1ae64cd8b9ff630bf1ef31aab8c4887a https://www.encodeproject.org/files/ENCFF755OXB/@@download/ENCFF755OXB.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LLC bam alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLM 581065715 Bing Ren, UCSD 340663c09fa363482c56fa335a5d722b https://www.encodeproject.org/files/ENCFF001LLC/@@download/ENCFF001LLC.bam mm9 released low read length, low read depth ENCFF001LLD bigBed broadPeak peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001YAJ 294601 Bing Ren, UCSD 951a681f30cdb45ac9874ccc1451a466 https://www.encodeproject.org/files/ENCFF001LLD/@@download/ENCFF001LLD.bigBed mm9 released low read length, low read depth ENCFF001LLJ bigWig signal ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLC 73170616 Bing Ren, UCSD bc076170b4c8f3158cacc66c92e636b4 https://www.encodeproject.org/files/ENCFF001LLJ/@@download/ENCFF001LLJ.bigWig mm9 released low read length, low read depth ENCFF001LLM fastq reads ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 824516883 Bing Ren, UCSD 0537221a1785e08a4730c9510e602e8d https://www.encodeproject.org/files/ENCFF001LLM/@@download/ENCFF001LLM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released low read length, low read depth ENCFF001YAJ bed broadPeak peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLC 180958 Bing Ren, UCSD 004972470b29dad76130c0f77e97c836 https://www.encodeproject.org/files/ENCFF001YAJ/@@download/ENCFF001YAJ.bed.gz mm9 released low read length, low read depth ENCFF036FLT bam unfiltered alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLM, ENCFF018NEO 919445539 ENCODE Processing Pipeline 7abc2e753af6aa9ca11d03c304b71d33 https://www.encodeproject.org/files/ENCFF036FLT/@@download/ENCFF036FLT.bam mm10 released low read length, low read depth ENCFF680IVV bam alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLM, ENCFF018NEO 513996540 ENCODE Processing Pipeline 22de7587aef0eaaa1d167feb514347c7 https://www.encodeproject.org/files/ENCFF680IVV/@@download/ENCFF680IVV.bam mm10 released low read length, low read depth ENCFF827IYU bigWig signal p-value ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF396FNQ, ENCFF680IVV 246259150 ENCODE Processing Pipeline 6ccea41f8241bb31f88f16c4ad7ac859 https://www.encodeproject.org/files/ENCFF827IYU/@@download/ENCFF827IYU.bigWig mm10 released low read length, low read depth ENCFF916PLK bigWig fold change over control ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF396FNQ, ENCFF680IVV 203237261 ENCODE Processing Pipeline ed646d2a7c6f22ba0f2c2050bd061fae https://www.encodeproject.org/files/ENCFF916PLK/@@download/ENCFF916PLK.bigWig mm10 released low read length, low read depth ENCFF632YML bigBed narrowPeak peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF160ZYB 1254954 ENCODE Processing Pipeline 2fc74bef8597da7b2a4dc44a47f8190e https://www.encodeproject.org/files/ENCFF632YML/@@download/ENCFF632YML.bigBed mm10 released low read length, low read depth ENCFF160ZYB bed narrowPeak peaks and background as input for IDR ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF396FNQ, ENCFF680IVV 542069 ENCODE Processing Pipeline 60cf0a6fcf9d16b66207b4d6be454045 https://www.encodeproject.org/files/ENCFF160ZYB/@@download/ENCFF160ZYB.bed.gz mm10 released low read length, low read depth ENCFF946NTK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF160ZYB, ENCFF547MET 105141 ENCODE Processing Pipeline 2584266e3bab63159c71820634f457dc https://www.encodeproject.org/files/ENCFF946NTK/@@download/ENCFF946NTK.bed.gz mm10 released low read length, low read depth ENCFF573WST bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF946NTK 211033 ENCODE Processing Pipeline ce733d3e22676762e123a49e72bb6dba https://www.encodeproject.org/files/ENCFF573WST/@@download/ENCFF573WST.bigBed mm10 released low read length, low read depth ENCFF001LHV bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIJ 219390311 Bing Ren, UCSD 5007b12f831953f4a5ebcf451f33b9cf https://www.encodeproject.org/files/ENCFF001LHV/@@download/ENCFF001LHV.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LHX bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIK 472072372 Bing Ren, UCSD b022a603a06ad6cfa375891e22fad992 https://www.encodeproject.org/files/ENCFF001LHX/@@download/ENCFF001LHX.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LHY bigBed broadPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAA 840259 Bing Ren, UCSD 8b19cfd4e6e49e1733d99c53721e1930 https://www.encodeproject.org/files/ENCFF001LHY/@@download/ENCFF001LHY.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIA bigWig signal ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHV, ENCFF001LHX 61251149 Bing Ren, UCSD 7c9895c4b57cebc1da5f897017f95770 https://www.encodeproject.org/files/ENCFF001LIA/@@download/ENCFF001LIA.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIJ fastq reads ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 841162261 Bing Ren, UCSD 20bf752c7fc880fa848a1eeee86352ef https://www.encodeproject.org/files/ENCFF001LIJ/@@download/ENCFF001LIJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIK fastq reads ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 812102450 Bing Ren, UCSD 8d761617311470deca8077439eb3fe15 https://www.encodeproject.org/files/ENCFF001LIK/@@download/ENCFF001LIK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001YAA bed broadPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHV, ENCFF001LHX 518473 Bing Ren, UCSD 386e7970b88d3149685d612946a420f8 https://www.encodeproject.org/files/ENCFF001YAA/@@download/ENCFF001YAA.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF214WCM bam unfiltered alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 842772713 ENCODE Processing Pipeline ad09061204469466ba45e066d0867b43 https://www.encodeproject.org/files/ENCFF214WCM/@@download/ENCFF214WCM.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF580NNY bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 238802631 ENCODE Processing Pipeline 3934281b6c25559c374873f08c087174 https://www.encodeproject.org/files/ENCFF580NNY/@@download/ENCFF580NNY.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF557KUY bam unfiltered alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 834205647 ENCODE Processing Pipeline 9ee701ac86c72c8d1c1d5befba8a1ec7 https://www.encodeproject.org/files/ENCFF557KUY/@@download/ENCFF557KUY.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF119HGR bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 299602650 ENCODE Processing Pipeline 60b05f6f90e9cc40e7b3119af7e14f4e https://www.encodeproject.org/files/ENCFF119HGR/@@download/ENCFF119HGR.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF256ZSB bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 295806777 ENCODE Processing Pipeline a4bc61c71123e7dc40b93a04cabb28de https://www.encodeproject.org/files/ENCFF256ZSB/@@download/ENCFF256ZSB.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF234JEC bed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 1699120 ENCODE Processing Pipeline a45abfb7d69d92562ef6e52176b2b03e https://www.encodeproject.org/files/ENCFF234JEC/@@download/ENCFF234JEC.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF228WNF bigBed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF513QUA 4560277 ENCODE Processing Pipeline d2d751346697afe6a8bee205f8e372ca https://www.encodeproject.org/files/ENCFF228WNF/@@download/ENCFF228WNF.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF779CYW bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF034VZI 1002649 ENCODE Processing Pipeline 0407742043e2b4f9d22e0701be43a1fe https://www.encodeproject.org/files/ENCFF779CYW/@@download/ENCFF779CYW.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF508ODE bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 274680192 ENCODE Processing Pipeline 2bfe729bda0c28e797659349833f36e8 https://www.encodeproject.org/files/ENCFF508ODE/@@download/ENCFF508ODE.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF853VHM bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 260563791 ENCODE Processing Pipeline f2760954d449838d85f31363a3b5b5c0 https://www.encodeproject.org/files/ENCFF853VHM/@@download/ENCFF853VHM.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF416FSS bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 106719262 ENCODE Processing Pipeline 5e0404d339d7f13f033b6a1e8ab0b7a8 https://www.encodeproject.org/files/ENCFF416FSS/@@download/ENCFF416FSS.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF532YGA bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 140672455 ENCODE Processing Pipeline f0ff92867a19e185aaad2df826dfc589 https://www.encodeproject.org/files/ENCFF532YGA/@@download/ENCFF532YGA.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF513QUA bed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 2171433 ENCODE Processing Pipeline d43d911c4c068ab691618ca55a567c30 https://www.encodeproject.org/files/ENCFF513QUA/@@download/ENCFF513QUA.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF068IFU bed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 3872040 ENCODE Processing Pipeline 9a048d9e7aa729d1a316d676eeabbe6d https://www.encodeproject.org/files/ENCFF068IFU/@@download/ENCFF068IFU.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF521IJB bigBed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU 9320363 ENCODE Processing Pipeline 6ae0ac219736ac39ae8b8014ac12744e https://www.encodeproject.org/files/ENCFF521IJB/@@download/ENCFF521IJB.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF154GFF bigBed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF234JEC 3446753 ENCODE Processing Pipeline 00cc76f0f8b2fa2f30d9c1795a5b9cbc https://www.encodeproject.org/files/ENCFF154GFF/@@download/ENCFF154GFF.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF057UOO bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 218543589 ENCODE Processing Pipeline f4415d6b589a38626a45ed08c803d2ad https://www.encodeproject.org/files/ENCFF057UOO/@@download/ENCFF057UOO.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF034VZI bed narrowPeak optimal idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU, ENCFF234JEC, ENCFF513QUA, ENCFF547MET 517919 ENCODE Processing Pipeline 4dcd43bc5a2693cb77a89aacd5d174b0 https://www.encodeproject.org/files/ENCFF034VZI/@@download/ENCFF034VZI.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF009PHO bed narrowPeak conservative idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU, ENCFF234JEC, ENCFF513QUA, ENCFF547MET 476982 ENCODE Processing Pipeline a7e6d3a72b37ca5cd79ccbf263e48f42 https://www.encodeproject.org/files/ENCFF009PHO/@@download/ENCFF009PHO.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF355UNA bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF009PHO 940835 ENCODE Processing Pipeline e59a85ed438b0e1dcaf14d49576d05b0 https://www.encodeproject.org/files/ENCFF355UNA/@@download/ENCFF355UNA.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LJK bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJW 375683432 Bing Ren, UCSD cd36e9deab4f052f4baf3cdf7b04407b https://www.encodeproject.org/files/ENCFF001LJK/@@download/ENCFF001LJK.bam mm9 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJL bigBed broadPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAF 758405 Bing Ren, UCSD 4bc5bfce3084d0073c0c9bac06d002df https://www.encodeproject.org/files/ENCFF001LJL/@@download/ENCFF001LJL.bigBed mm9 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJM bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJV 351790353 Bing Ren, UCSD bdd0dd1305182a922b5e9f9d8997e53d https://www.encodeproject.org/files/ENCFF001LJM/@@download/ENCFF001LJM.bam mm9 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJP bigWig signal ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJK, ENCFF001LJM 65461935 Bing Ren, UCSD 7ec39a77b0f48b834322d73b54c54d04 https://www.encodeproject.org/files/ENCFF001LJP/@@download/ENCFF001LJP.bigWig mm9 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJV fastq reads ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 727262572 Bing Ren, UCSD c19df76966fc16da96cc7a1817f9bc3d https://www.encodeproject.org/files/ENCFF001LJV/@@download/ENCFF001LJV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJW fastq reads ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 33 single-ended 559726846 Bing Ren, UCSD 150a94c66571075c8d7c93234c99265c https://www.encodeproject.org/files/ENCFF001LJW/@@download/ENCFF001LJW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length, mild to moderate bottlenecking, mixed read lengths, inconsistent control read length insufficient read depth, insufficient read length ENCFF001YAF bed broadPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJK, ENCFF001LJM 455018 Bing Ren, UCSD cb9e5b2fce794b3cd151a9423bb79e61 https://www.encodeproject.org/files/ENCFF001YAF/@@download/ENCFF001YAF.bed.gz mm9 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF697CPY bam unfiltered alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 761299643 ENCODE Processing Pipeline 8bd123aef2a81b4a089fc5123a6a4c8a https://www.encodeproject.org/files/ENCFF697CPY/@@download/ENCFF697CPY.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF829TDM bam unfiltered alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 639695117 ENCODE Processing Pipeline 29e837c9b361cfc9a9d83e58881e6f58 https://www.encodeproject.org/files/ENCFF829TDM/@@download/ENCFF829TDM.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF180YAD bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 327606791 ENCODE Processing Pipeline 47cb3f34235d3ca0c05be0f55f5d386c https://www.encodeproject.org/files/ENCFF180YAD/@@download/ENCFF180YAD.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF198ZVJ bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 338293825 ENCODE Processing Pipeline 7f7dfc13b916f2c4da41a2c147a74b9f https://www.encodeproject.org/files/ENCFF198ZVJ/@@download/ENCFF198ZVJ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF474GRP bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 257944275 ENCODE Processing Pipeline cd731690ee99025d397982ea4aae76e0 https://www.encodeproject.org/files/ENCFF474GRP/@@download/ENCFF474GRP.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF205YLK bed narrowPeak conservative idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF366XDH, ENCFF447SUY, ENCFF547MET, ENCFF644KRF 519516 ENCODE Processing Pipeline 9b98811fef340eb774acaac74e9fdab8 https://www.encodeproject.org/files/ENCFF205YLK/@@download/ENCFF205YLK.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF616HYA bed narrowPeak optimal idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF366XDH, ENCFF447SUY, ENCFF547MET, ENCFF644KRF 577078 ENCODE Processing Pipeline 460ef0f9b0836dd60f0c1212d21d83fa https://www.encodeproject.org/files/ENCFF616HYA/@@download/ENCFF616HYA.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF639AFA bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 274677793 ENCODE Processing Pipeline 90e1855f00ba6b3ad9a43e0da99a5501 https://www.encodeproject.org/files/ENCFF639AFA/@@download/ENCFF639AFA.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF644KRF bed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 2617929 ENCODE Processing Pipeline d4d8d386a0123c1c0d7bcfaaffca6657 https://www.encodeproject.org/files/ENCFF644KRF/@@download/ENCFF644KRF.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF753TYE bigBed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF644KRF 6433530 ENCODE Processing Pipeline e14c93d8a4d08a9a42a6a164e8eaea06 https://www.encodeproject.org/files/ENCFF753TYE/@@download/ENCFF753TYE.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF893QOZ bigBed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF447SUY 10639180 ENCODE Processing Pipeline 14774412c86acb6fdfc7d2483c4dc714 https://www.encodeproject.org/files/ENCFF893QOZ/@@download/ENCFF893QOZ.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF754RBY bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF616HYA 1051653 ENCODE Processing Pipeline 9906bc3e66a434f30183a738ee606d81 https://www.encodeproject.org/files/ENCFF754RBY/@@download/ENCFF754RBY.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF693RNU bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 258158661 ENCODE Processing Pipeline 63f359b0dbdf5fb828af89674e261b43 https://www.encodeproject.org/files/ENCFF693RNU/@@download/ENCFF693RNU.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF708QMA bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 168568772 ENCODE Processing Pipeline dfccebe9b4430b65998f88813cc1c4dd https://www.encodeproject.org/files/ENCFF708QMA/@@download/ENCFF708QMA.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF987EVU bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 147442410 ENCODE Processing Pipeline f48c5eccd3ed8469800a62cf8a9d121c https://www.encodeproject.org/files/ENCFF987EVU/@@download/ENCFF987EVU.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF366XDH bed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 2785197 ENCODE Processing Pipeline 4c2ed94bdbadae711630ed1fa3d99867 https://www.encodeproject.org/files/ENCFF366XDH/@@download/ENCFF366XDH.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF434XPF bigBed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF366XDH 6258262 ENCODE Processing Pipeline 28dca9ad0f848325589222059ed9e7a4 https://www.encodeproject.org/files/ENCFF434XPF/@@download/ENCFF434XPF.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF089NKC bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF205YLK 968125 ENCODE Processing Pipeline 212d108894489934ce88beba17331ae7 https://www.encodeproject.org/files/ENCFF089NKC/@@download/ENCFF089NKC.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF824BON bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 322913450 ENCODE Processing Pipeline e476278b98330ba3b5bc38e4fa2c728a https://www.encodeproject.org/files/ENCFF824BON/@@download/ENCFF824BON.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF447SUY bed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 4673717 ENCODE Processing Pipeline 9bef35af9b60a397d777ca3c6a6b42f2 https://www.encodeproject.org/files/ENCFF447SUY/@@download/ENCFF447SUY.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, insufficient read length ENCFF001MRR bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MRX 1601884845 Ross Hardison, PennState 6e3f825bf353d320b5a22abd87bacf4e https://www.encodeproject.org/files/ENCFF001MRR/@@download/ENCFF001MRR.bam mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MRS bigBed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFS 463733 Ross Hardison, PennState 355593795099c6107159485012a86fb6 https://www.encodeproject.org/files/ENCFF001MRS/@@download/ENCFF001MRS.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MRT bigBed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFT 393386 Ross Hardison, PennState 66f98944d7609c21d8acb16308fbb295 https://www.encodeproject.org/files/ENCFF001MRT/@@download/ENCFF001MRT.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MRU bigBed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFU 295856 Ross Hardison, PennState 58c14289c4fbc91759aecdcc59d5ba7c https://www.encodeproject.org/files/ENCFF001MRU/@@download/ENCFF001MRU.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MRV bigWig signal ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 3353889748 Ross Hardison, PennState fc9f2d881606ba21b501f809b302427c https://www.encodeproject.org/files/ENCFF001MRV/@@download/ENCFF001MRV.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MRW bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSL 6485271335 Ross Hardison, PennState 5f384e3ae61ced211f2f8eb02ac667de https://www.encodeproject.org/files/ENCFF001MRW/@@download/ENCFF001MRW.bam mm9 archived low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MRX fastq reads ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 1261099639 Ross Hardison, PennState 7f77ac95f075cf8991f861c05e61c350 https://www.encodeproject.org/files/ENCFF001MRX/@@download/ENCFF001MRX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001MSM/ released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MRY bigWig signal ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5731298627 Ross Hardison, PennState 52a285132cd68a17adf222c3949504a0 https://www.encodeproject.org/files/ENCFF001MRY/@@download/ENCFF001MRY.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MRZ bigWig signal ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 6026660497 Ross Hardison, PennState b490ee19344d43b2f45108ece769a90e https://www.encodeproject.org/files/ENCFF001MRZ/@@download/ENCFF001MRZ.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MSL fastq reads ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 5759769099 Ross Hardison, PennState f5397ecb7935af5ff6b84f39fe2705bd https://www.encodeproject.org/files/ENCFF001MSL/@@download/ENCFF001MSL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001YFS bed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 204123 Ross Hardison, PennState 5486b3b6eb4ab3eb57e1387f38299c46 https://www.encodeproject.org/files/ENCFF001YFS/@@download/ENCFF001YFS.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YFT bed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 204978 Ross Hardison, PennState c4110164197586aeedfa9f2cdfe44b1f https://www.encodeproject.org/files/ENCFF001YFT/@@download/ENCFF001YFT.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YFU bed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 147516 Ross Hardison, PennState 02ed1c307f26ee405caacf6ae7356c29 https://www.encodeproject.org/files/ENCFF001YFU/@@download/ENCFF001YFU.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF282SQE bam unfiltered alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRX, ENCFF018NEO 1681545887 ENCODE Processing Pipeline 645db5f78b925f379409378b82fed44d https://www.encodeproject.org/files/ENCFF282SQE/@@download/ENCFF282SQE.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF181MQO bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRX, ENCFF018NEO 1126157125 ENCODE Processing Pipeline e5ebad477c6748970909ceca1e030d6b https://www.encodeproject.org/files/ENCFF181MQO/@@download/ENCFF181MQO.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF709ILX bam unfiltered alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSL, ENCFF018NEO 5208172392 ENCODE Processing Pipeline 40e3d03910323d741a8aad1bca5c3bea https://www.encodeproject.org/files/ENCFF709ILX/@@download/ENCFF709ILX.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF033GTE bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSL, ENCFF018NEO 3556656968 ENCODE Processing Pipeline 43bf54aaf8a6fb50818cec92c04546df https://www.encodeproject.org/files/ENCFF033GTE/@@download/ENCFF033GTE.bam mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF793ZNS bigWig signal p-value ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 1018892642 ENCODE Processing Pipeline cad89029b4bca20c13d282035b08c65c https://www.encodeproject.org/files/ENCFF793ZNS/@@download/ENCFF793ZNS.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF842MLA bigWig signal p-value ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF033GTE, ENCFF383IWZ, ENCFF676LVI 1588189660 ENCODE Processing Pipeline 6a6711b0fcc00342b1e2d5069cb03cab https://www.encodeproject.org/files/ENCFF842MLA/@@download/ENCFF842MLA.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF612DCB bigWig signal p-value ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF033GTE, ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 1732356361 ENCODE Processing Pipeline cb10970b2dd94c7d05f1bd4627ba5655 https://www.encodeproject.org/files/ENCFF612DCB/@@download/ENCFF612DCB.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF842BCR bigWig fold change over control ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 805030455 ENCODE Processing Pipeline 2e12f1f7f86ce3afe59c20cf49aef350 https://www.encodeproject.org/files/ENCFF842BCR/@@download/ENCFF842BCR.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF390OEE bigWig fold change over control ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF033GTE, ENCFF383IWZ, ENCFF676LVI 1686626604 ENCODE Processing Pipeline 258950decc176b9e4d43f818d0932c70 https://www.encodeproject.org/files/ENCFF390OEE/@@download/ENCFF390OEE.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF382TKE bed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 5679327 ENCODE Processing Pipeline 4df86193aefde889f77c9229ea7cf232 https://www.encodeproject.org/files/ENCFF382TKE/@@download/ENCFF382TKE.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF279GQJ bigWig fold change over control ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF033GTE, ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 1794789333 ENCODE Processing Pipeline 7ef54d2de37e50e32cb03a8e0e9c24d7 https://www.encodeproject.org/files/ENCFF279GQJ/@@download/ENCFF279GQJ.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF101JMH bed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF033GTE, ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 7116793 ENCODE Processing Pipeline 9487fc0e2df4789e874b07854ae5b8e6 https://www.encodeproject.org/files/ENCFF101JMH/@@download/ENCFF101JMH.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF328QPY bigBed narrowPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF101JMH 11202933 ENCODE Processing Pipeline 8e3fd8ab85b09ae8fb55472cf3cd6b03 https://www.encodeproject.org/files/ENCFF328QPY/@@download/ENCFF328QPY.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF684HMD bed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF033GTE, ENCFF383IWZ, ENCFF676LVI 7032305 ENCODE Processing Pipeline 2bfd2b7c1223f7e5d58cc5db887273b9 https://www.encodeproject.org/files/ENCFF684HMD/@@download/ENCFF684HMD.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF004VTE bed narrowPeak conservative idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF101JMH, ENCFF382TKE, ENCFF547MET, ENCFF684HMD 154839 ENCODE Processing Pipeline d0374d1bf03dee82f4edc30c75c31755 https://www.encodeproject.org/files/ENCFF004VTE/@@download/ENCFF004VTE.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF934LKD bigBed narrowPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF382TKE 11376800 ENCODE Processing Pipeline f4e28cbfadfbf5ecbefaa0bcf98acdcf https://www.encodeproject.org/files/ENCFF934LKD/@@download/ENCFF934LKD.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF724FOF bed narrowPeak optimal idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF101JMH, ENCFF382TKE, ENCFF547MET, ENCFF684HMD 159070 ENCODE Processing Pipeline 9fb3cab31531732d0ac1c02ea36c46ea https://www.encodeproject.org/files/ENCFF724FOF/@@download/ENCFF724FOF.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF564PGL bigBed narrowPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF684HMD 11249748 ENCODE Processing Pipeline 240ceb8ab2ea070e5d851ed8909b6f7e https://www.encodeproject.org/files/ENCFF564PGL/@@download/ENCFF564PGL.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF642WKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF004VTE 326759 ENCODE Processing Pipeline 7fd65d946223fb1a06d2d62c2adfe30f https://www.encodeproject.org/files/ENCFF642WKN/@@download/ENCFF642WKN.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF229RTM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF724FOF 333443 ENCODE Processing Pipeline f4a55c17c0155c8131ab270cb2d8106b https://www.encodeproject.org/files/ENCFF229RTM/@@download/ENCFF229RTM.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms biological replicates with identical biosample ENCFF001MQG bam alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQO 1703647291 Ross Hardison, PennState ebd27a45b04c9ba626d0f03fba45f1d3 https://www.encodeproject.org/files/ENCFF001MQG/@@download/ENCFF001MQG.bam mm9 released low read length, inconsistent platforms ENCFF001MQH bigBed broadPeak peaks ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFN 561586 Ross Hardison, PennState 389826caa3dbf5e2f84b5d4f04da58e7 https://www.encodeproject.org/files/ENCFF001MQH/@@download/ENCFF001MQH.bigBed mm9 released low read length, inconsistent platforms ENCFF001MQI bigWig signal ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4122031127 Ross Hardison, PennState df3b4f13ee040da079333b2d3e5e3a27 https://www.encodeproject.org/files/ENCFF001MQI/@@download/ENCFF001MQI.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MQO fastq reads ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1376463661 Ross Hardison, PennState 27eed82facb2a01ee8f4fe16e9b5f7f6 https://www.encodeproject.org/files/ENCFF001MQO/@@download/ENCFF001MQO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MRI/ released low read length, inconsistent control read length, inconsistent platforms ENCFF001YFN bed broadPeak peaks ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 256915 Ross Hardison, PennState 94b3f3746cffe13e23a98f8eb03a1770 https://www.encodeproject.org/files/ENCFF001YFN/@@download/ENCFF001YFN.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF029KEW bam unfiltered alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQO, ENCFF018NEO 1800080374 ENCODE Processing Pipeline 43564922cc5b1e4f79d3c9625eb97690 https://www.encodeproject.org/files/ENCFF029KEW/@@download/ENCFF029KEW.bam mm10 released low read length, inconsistent platforms ENCFF242LAJ bam alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQO, ENCFF018NEO 1272805430 ENCODE Processing Pipeline 9d9071d9c436caff72f6a81cc8ce5bc8 https://www.encodeproject.org/files/ENCFF242LAJ/@@download/ENCFF242LAJ.bam mm10 released low read length, inconsistent platforms ENCFF001LJA bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJN 644482909 Bing Ren, UCSD 0360897e7aa58b8ab60b74289b571b36 https://www.encodeproject.org/files/ENCFF001LJA/@@download/ENCFF001LJA.bam mm9 released low read length insufficient read depth ENCFF001LJB bigBed broadPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAD 350445 Bing Ren, UCSD cc68a958dc3fe8d63ac8112e5bb45466 https://www.encodeproject.org/files/ENCFF001LJB/@@download/ENCFF001LJB.bigBed mm9 released low read length insufficient read depth ENCFF001LJC bigWig signal ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJA, ENCFF001LJD 57423865 Bing Ren, UCSD 12d5dd509903e980b0610c5b813dc3cc https://www.encodeproject.org/files/ENCFF001LJC/@@download/ENCFF001LJC.bigWig mm9 released low read length insufficient read depth ENCFF001LJD bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJO 685885202 Bing Ren, UCSD e2ebd68f304d46428b4e2a46bc42271d https://www.encodeproject.org/files/ENCFF001LJD/@@download/ENCFF001LJD.bam mm9 released low read length insufficient read depth ENCFF001LJN fastq reads ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 697044760 Bing Ren, UCSD 842e5e09a0c545dc42cbe70ef42a8297 https://www.encodeproject.org/files/ENCFF001LJN/@@download/ENCFF001LJN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length insufficient read depth ENCFF001LJO fastq reads ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 814014837 Bing Ren, UCSD 594481beb83ed1b95582f72a3c455764 https://www.encodeproject.org/files/ENCFF001LJO/@@download/ENCFF001LJO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length insufficient read depth ENCFF001YAD bed broadPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJA, ENCFF001LJD 228977 Bing Ren, UCSD ffb0119d85fbec52de191c912f304e2a https://www.encodeproject.org/files/ENCFF001YAD/@@download/ENCFF001YAD.bed.gz mm9 released low read length insufficient read depth ENCFF372LYI bam unfiltered alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJN, ENCFF018NEO 769003719 ENCODE Processing Pipeline bfd64e071c7f4c425bf74d4b7f0766e8 https://www.encodeproject.org/files/ENCFF372LYI/@@download/ENCFF372LYI.bam mm10 released low read length insufficient read depth ENCFF216DXX bam unfiltered alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJO, ENCFF018NEO 900057159 ENCODE Processing Pipeline ba69dac30e5ce18cd6a71825b0ee13cd https://www.encodeproject.org/files/ENCFF216DXX/@@download/ENCFF216DXX.bam mm10 released low read length insufficient read depth ENCFF676OVP bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJO, ENCFF018NEO 483241675 ENCODE Processing Pipeline 5d4b05a603dfa20e0b7fc2c80d0c4600 https://www.encodeproject.org/files/ENCFF676OVP/@@download/ENCFF676OVP.bam mm10 released low read length insufficient read depth ENCFF358NVC bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJN, ENCFF018NEO 440923333 ENCODE Processing Pipeline 455a3990b965d834478436cb375c7125 https://www.encodeproject.org/files/ENCFF358NVC/@@download/ENCFF358NVC.bam mm10 released low read length insufficient read depth ENCFF235AQO bigWig signal p-value ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF358NVC, ENCFF439WCI, ENCFF683TKC 321484513 ENCODE Processing Pipeline cb1523855879756dd3f692d1ab810296 https://www.encodeproject.org/files/ENCFF235AQO/@@download/ENCFF235AQO.bigWig mm10 released low read length insufficient read depth ENCFF989VZZ bed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 4627878 ENCODE Processing Pipeline d3b34d2bad4ddcd6d9de4b56301714e8 https://www.encodeproject.org/files/ENCFF989VZZ/@@download/ENCFF989VZZ.bed.gz mm10 released low read length insufficient read depth ENCFF612UFO bigWig signal p-value ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF358NVC, ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 388543244 ENCODE Processing Pipeline 00b003d547e6ef631b378077b9b0dc58 https://www.encodeproject.org/files/ENCFF612UFO/@@download/ENCFF612UFO.bigWig mm10 released low read length insufficient read depth ENCFF607KLT bigWig fold change over control ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 262600275 ENCODE Processing Pipeline ce875704eda8ec01464766729a6e249c https://www.encodeproject.org/files/ENCFF607KLT/@@download/ENCFF607KLT.bigWig mm10 released low read length insufficient read depth ENCFF330QQM bigWig signal p-value ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 409470297 ENCODE Processing Pipeline 68a48457fe89461ad1f39d7d6e209bc0 https://www.encodeproject.org/files/ENCFF330QQM/@@download/ENCFF330QQM.bigWig mm10 released low read length insufficient read depth ENCFF467HHM bigWig fold change over control ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF358NVC, ENCFF439WCI, ENCFF683TKC 233422228 ENCODE Processing Pipeline 8d8ccfb1185cdea5d8335e5191241556 https://www.encodeproject.org/files/ENCFF467HHM/@@download/ENCFF467HHM.bigWig mm10 released low read length insufficient read depth ENCFF320LZI bigWig fold change over control ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF358NVC, ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 406824070 ENCODE Processing Pipeline 9ca7289b696a0cb4ecba46016199231b https://www.encodeproject.org/files/ENCFF320LZI/@@download/ENCFF320LZI.bigWig mm10 released low read length insufficient read depth ENCFF928UGN bed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF358NVC, ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 4708405 ENCODE Processing Pipeline d70957684064ca5d1248a8ece5a7134e https://www.encodeproject.org/files/ENCFF928UGN/@@download/ENCFF928UGN.bed.gz mm10 released low read length insufficient read depth ENCFF397PQB bed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF358NVC, ENCFF439WCI, ENCFF683TKC 4848677 ENCODE Processing Pipeline 33758a00a40acc59df3f1c31a4948db8 https://www.encodeproject.org/files/ENCFF397PQB/@@download/ENCFF397PQB.bed.gz mm10 released low read length insufficient read depth ENCFF434CET bigBed narrowPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF397PQB 9562254 ENCODE Processing Pipeline 675cba079b5c6fe4266e78bcffa6e67f https://www.encodeproject.org/files/ENCFF434CET/@@download/ENCFF434CET.bigBed mm10 released low read length insufficient read depth ENCFF469MWN bigBed narrowPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF989VZZ 9431201 ENCODE Processing Pipeline bf480963919a05093333abc22632c6f8 https://www.encodeproject.org/files/ENCFF469MWN/@@download/ENCFF469MWN.bigBed mm10 released low read length insufficient read depth ENCFF350GCX bed narrowPeak conservative idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF397PQB, ENCFF547MET, ENCFF928UGN, ENCFF989VZZ 418402 ENCODE Processing Pipeline eb1473a07281d8bb850def58f164f561 https://www.encodeproject.org/files/ENCFF350GCX/@@download/ENCFF350GCX.bed.gz mm10 released low read length insufficient read depth ENCFF737PRI bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF350GCX 850955 ENCODE Processing Pipeline 1b837f0dfa750ddf6fb8e1865831fa30 https://www.encodeproject.org/files/ENCFF737PRI/@@download/ENCFF737PRI.bigBed mm10 released low read length insufficient read depth ENCFF179FJG bed narrowPeak optimal idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF397PQB, ENCFF547MET, ENCFF928UGN, ENCFF989VZZ 480846 ENCODE Processing Pipeline ae8242dd330ecff2c0a4f26afb24ccd6 https://www.encodeproject.org/files/ENCFF179FJG/@@download/ENCFF179FJG.bed.gz mm10 released low read length insufficient read depth ENCFF451YAQ bigBed narrowPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF928UGN 9876473 ENCODE Processing Pipeline 066218edac8d6e7f1299ca136b224600 https://www.encodeproject.org/files/ENCFF451YAQ/@@download/ENCFF451YAQ.bigBed mm10 released low read length insufficient read depth ENCFF260GSL bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF179FJG 949540 ENCODE Processing Pipeline bb18f048b6a9afeec272e606ec90fd0b https://www.encodeproject.org/files/ENCFF260GSL/@@download/ENCFF260GSL.bigBed mm10 released low read length insufficient read depth ENCFF001NXN bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NXQ 470012521 Michael Snyder, Stanford 1ceed07debeeda5670fa64cb0648d01d https://www.encodeproject.org/files/ENCFF001NXN/@@download/ENCFF001NXN.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXP bigBed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJZ 368304 Michael Snyder, Stanford d224fa8d3ece935ccf55b2b1c997496b https://www.encodeproject.org/files/ENCFF001NXP/@@download/ENCFF001NXP.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXQ fastq reads ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1054933775 Michael Snyder, Stanford 73614a27bce86fb5037ad04ff532b9d0 https://www.encodeproject.org/files/ENCFF001NXQ/@@download/ENCFF001NXQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTD/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXS fastq reads ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 950708384 Michael Snyder, Stanford 3d730aeb9419ed931cf5b658eeb39843 https://www.encodeproject.org/files/ENCFF001NXS/@@download/ENCFF001NXS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTF/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXU bigWig signal ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NXN, ENCFF001NXV 304120173 Michael Snyder, Stanford 3f95e8d510ce43582eb2ccbd66a7b455 https://www.encodeproject.org/files/ENCFF001NXU/@@download/ENCFF001NXU.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NXV bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NXS 437907884 Michael Snyder, Stanford 19db2477e1e83950f2a31f2f22c41522 https://www.encodeproject.org/files/ENCFF001NXV/@@download/ENCFF001NXV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001YJZ bed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NXN, ENCFF001NXV 128359 Michael Snyder, Stanford dd9ca816223656e4d318efa6fbba2873 https://www.encodeproject.org/files/ENCFF001YJZ/@@download/ENCFF001YJZ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF190KLW bam unfiltered alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NXS, ENCFF018NEO 969149260 ENCODE Processing Pipeline 85eedd65392e063ededf532a62901047 https://www.encodeproject.org/files/ENCFF190KLW/@@download/ENCFF190KLW.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF568LCO bam unfiltered alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NXQ, ENCFF018NEO 1046579413 ENCODE Processing Pipeline 94dda320174594e7a6bec701be5da50f https://www.encodeproject.org/files/ENCFF568LCO/@@download/ENCFF568LCO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF641XAS bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NXS, ENCFF018NEO 620174059 ENCODE Processing Pipeline 76a47e3e25f269888d33f03a9c9bff1a https://www.encodeproject.org/files/ENCFF641XAS/@@download/ENCFF641XAS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF847DDB bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NXQ, ENCFF018NEO 652472029 ENCODE Processing Pipeline f5f51870bab4fbc18c10bf65978d95b1 https://www.encodeproject.org/files/ENCFF847DDB/@@download/ENCFF847DDB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF301OIB bigWig signal p-value ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 485053620 ENCODE Processing Pipeline e4bd5301df0bac496466ff25e1a91228 https://www.encodeproject.org/files/ENCFF301OIB/@@download/ENCFF301OIB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF852GDN bigWig signal p-value ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF641XAS, ENCFF893WLX 348604359 ENCODE Processing Pipeline fc5bb055a71eda487a3cb1d97f1148de https://www.encodeproject.org/files/ENCFF852GDN/@@download/ENCFF852GDN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF122RAN bigWig signal p-value ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF641XAS, ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 466153770 ENCODE Processing Pipeline 054b24ece3e7a352bb610d2da3b28171 https://www.encodeproject.org/files/ENCFF122RAN/@@download/ENCFF122RAN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF977GWQ bigWig fold change over control ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 347612144 ENCODE Processing Pipeline 380daf1be961d659f84a31e7f7a43ecf https://www.encodeproject.org/files/ENCFF977GWQ/@@download/ENCFF977GWQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF703BHO bigWig fold change over control ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF641XAS, ENCFF893WLX 257494336 ENCODE Processing Pipeline f1f449e8d6954ca739ab0a93ab512872 https://www.encodeproject.org/files/ENCFF703BHO/@@download/ENCFF703BHO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF128VVT bigWig fold change over control ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF641XAS, ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 549522883 ENCODE Processing Pipeline 8df5ca4a2d0d611d1eba7c425d52e6fd https://www.encodeproject.org/files/ENCFF128VVT/@@download/ENCFF128VVT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF490UJP bed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 6047341 ENCODE Processing Pipeline 5d52d3a70bc57e7c51b35b9c71dacfbf https://www.encodeproject.org/files/ENCFF490UJP/@@download/ENCFF490UJP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF691FKN bed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF641XAS, ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 6659375 ENCODE Processing Pipeline 4924d2ce9f744e172089e9ef0656dde4 https://www.encodeproject.org/files/ENCFF691FKN/@@download/ENCFF691FKN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF806WJV bed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF641XAS, ENCFF893WLX 5749483 ENCODE Processing Pipeline bf93c7d3d1cb3d40e48c4872bfe46a64 https://www.encodeproject.org/files/ENCFF806WJV/@@download/ENCFF806WJV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF418XRL bigBed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF490UJP 12696152 ENCODE Processing Pipeline db408182d05d0c4671cd82fe04012614 https://www.encodeproject.org/files/ENCFF418XRL/@@download/ENCFF418XRL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF404BEQ bigBed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF806WJV 12502666 ENCODE Processing Pipeline 9b06fcf2499ce2b9a07aaba0b659c25f https://www.encodeproject.org/files/ENCFF404BEQ/@@download/ENCFF404BEQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF717LRR bigBed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF691FKN 12619302 ENCODE Processing Pipeline d93dfe83d5a9e2edae55820caa74d82a https://www.encodeproject.org/files/ENCFF717LRR/@@download/ENCFF717LRR.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF127IMK bed narrowPeak conservative idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF490UJP, ENCFF547MET, ENCFF691FKN, ENCFF806WJV 621069 ENCODE Processing Pipeline 421ac940d02c695d122d1c38a7c2158a https://www.encodeproject.org/files/ENCFF127IMK/@@download/ENCFF127IMK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF946WSQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127IMK 1280906 ENCODE Processing Pipeline 6df66fa3f857c9c74f6cd6ee31abb614 https://www.encodeproject.org/files/ENCFF946WSQ/@@download/ENCFF946WSQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF128DSQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF676PFD 1338619 ENCODE Processing Pipeline 0328de9b95c90ae8c830b9ebdb276ca8 https://www.encodeproject.org/files/ENCFF128DSQ/@@download/ENCFF128DSQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF676PFD bed narrowPeak optimal idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF490UJP, ENCFF547MET, ENCFF691FKN, ENCFF806WJV 660076 ENCODE Processing Pipeline a17122ab6e27dcfc43d3d2bd09d8f695 https://www.encodeproject.org/files/ENCFF676PFD/@@download/ENCFF676PFD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NSH bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NTN 320001397 Michael Snyder, Stanford 7f25f6a76d0829d139b6199df0c68488 https://www.encodeproject.org/files/ENCFF001NSH/@@download/ENCFF001NSH.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NSI bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NTK 335030677 Michael Snyder, Stanford 441690b75d7bd006c655d013f6848426 https://www.encodeproject.org/files/ENCFF001NSI/@@download/ENCFF001NSI.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NSJ bigBed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJM 2734821 Michael Snyder, Stanford d01a4084adfc3d61431e17a74e4bb3cf https://www.encodeproject.org/files/ENCFF001NSJ/@@download/ENCFF001NSJ.bigBed mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NSM bigWig signal ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NSH, ENCFF001NSI 273148851 Michael Snyder, Stanford aa55fd09bf8173e796bdc75a0454ef7f https://www.encodeproject.org/files/ENCFF001NSM/@@download/ENCFF001NSM.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NTK fastq reads ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 921190802 Michael Snyder, Stanford fa46374a09c29e7e95dd44f828e6682c https://www.encodeproject.org/files/ENCFF001NTK/@@download/ENCFF001NTK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NVE/ released low read length, low read depth biological replicates with identical biosample ENCFF001NTN fastq reads ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 954638773 Michael Snyder, Stanford e62eccf5d396daf6a3d3cbbec8e55432 https://www.encodeproject.org/files/ENCFF001NTN/@@download/ENCFF001NTN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NVE/ released low read length, low read depth biological replicates with identical biosample ENCFF001YJM bed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NSH, ENCFF001NSI 1145119 Michael Snyder, Stanford c3722ca6e7ccb27c9be9f5d44ac2d966 https://www.encodeproject.org/files/ENCFF001YJM/@@download/ENCFF001YJM.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF550NDX bam unfiltered alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NTK, ENCFF018NEO 1058455513 ENCODE Processing Pipeline d9e6344f2d2d095cc988745cf24a2c58 https://www.encodeproject.org/files/ENCFF550NDX/@@download/ENCFF550NDX.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF772WES bam unfiltered alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTN, ENCFF018NEO 1095750752 ENCODE Processing Pipeline ec7808d2fd9124f4b4bf61b1f24a7d09 https://www.encodeproject.org/files/ENCFF772WES/@@download/ENCFF772WES.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF170BUL bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NTK, ENCFF018NEO 642545742 ENCODE Processing Pipeline 278cbc99e956a2505fa2efc2d4acfaf3 https://www.encodeproject.org/files/ENCFF170BUL/@@download/ENCFF170BUL.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF886LQZ bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTN, ENCFF018NEO 652949954 ENCODE Processing Pipeline e29629fe5481fb35ab1b361902a23380 https://www.encodeproject.org/files/ENCFF886LQZ/@@download/ENCFF886LQZ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF267NJV bigWig signal p-value ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF170BUL, ENCFF757ZBC 338525740 ENCODE Processing Pipeline 4bd42a6748013d5db6344e30b3140615 https://www.encodeproject.org/files/ENCFF267NJV/@@download/ENCFF267NJV.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF571JJC bigWig signal p-value ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF757ZBC, ENCFF886LQZ 360361704 ENCODE Processing Pipeline ec1f060fea299731a8f4d6af16b88d6c https://www.encodeproject.org/files/ENCFF571JJC/@@download/ENCFF571JJC.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF322BGU bigWig signal p-value ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF170BUL, ENCFF757ZBC, ENCFF886LQZ 541340551 ENCODE Processing Pipeline d68c4f2d7e565b6397120001efe962f4 https://www.encodeproject.org/files/ENCFF322BGU/@@download/ENCFF322BGU.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF085MXT bigWig fold change over control ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF757ZBC, ENCFF886LQZ 317958788 ENCODE Processing Pipeline 66e68c682489f6a86e456698ccd27ba7 https://www.encodeproject.org/files/ENCFF085MXT/@@download/ENCFF085MXT.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF993SJL bigWig fold change over control ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF170BUL, ENCFF757ZBC 298856081 ENCODE Processing Pipeline 883d7d6822e70f2728b9bfb96d406a23 https://www.encodeproject.org/files/ENCFF993SJL/@@download/ENCFF993SJL.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF160HQN bigWig fold change over control ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF170BUL, ENCFF757ZBC, ENCFF886LQZ 523313787 ENCODE Processing Pipeline 88e9b2376d6566a7baeef8783ba3c47b https://www.encodeproject.org/files/ENCFF160HQN/@@download/ENCFF160HQN.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF041ZRE bed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF757ZBC, ENCFF886LQZ 5690043 ENCODE Processing Pipeline 7542be9291520b69dd63830974dd0a14 https://www.encodeproject.org/files/ENCFF041ZRE/@@download/ENCFF041ZRE.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF153NNX bed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF170BUL, ENCFF757ZBC 5351067 ENCODE Processing Pipeline 5cdf08c60316901d4a664a8e74e17252 https://www.encodeproject.org/files/ENCFF153NNX/@@download/ENCFF153NNX.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF282VZU bed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF170BUL, ENCFF757ZBC, ENCFF886LQZ 6248359 ENCODE Processing Pipeline 266c16d4fccbff79ba7c42abf6701af4 https://www.encodeproject.org/files/ENCFF282VZU/@@download/ENCFF282VZU.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF937WPN bigBed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF041ZRE 13210300 ENCODE Processing Pipeline c55cbb828d9cbc53f9e287713275be6b https://www.encodeproject.org/files/ENCFF937WPN/@@download/ENCFF937WPN.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF568RBL bigBed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF153NNX 10814565 ENCODE Processing Pipeline bee15cb2236ce3752d8b92767e338ec8 https://www.encodeproject.org/files/ENCFF568RBL/@@download/ENCFF568RBL.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF419KAN bigBed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF282VZU 13392281 ENCODE Processing Pipeline ecb360cbc6ff47e6420d9fdf348d2d9a https://www.encodeproject.org/files/ENCFF419KAN/@@download/ENCFF419KAN.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF302QVP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF546TPQ 1364564 ENCODE Processing Pipeline 8d844acd83561c75d336a5ed0034b1eb https://www.encodeproject.org/files/ENCFF302QVP/@@download/ENCFF302QVP.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF546TPQ bed narrowPeak conservative idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF041ZRE, ENCFF153NNX, ENCFF282VZU, ENCFF547MET 705146 ENCODE Processing Pipeline 58d30ce20139dcf5434cee9eb58ffc86 https://www.encodeproject.org/files/ENCFF546TPQ/@@download/ENCFF546TPQ.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF219OVU bed narrowPeak optimal idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF041ZRE, ENCFF153NNX, ENCFF282VZU, ENCFF547MET 792922 ENCODE Processing Pipeline 6c2a10fa95692479bbb15cd0d0736a96 https://www.encodeproject.org/files/ENCFF219OVU/@@download/ENCFF219OVU.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF515FLJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF219OVU 1493648 ENCODE Processing Pipeline 8bbb1c44765224335e8ed100a8b88212 https://www.encodeproject.org/files/ENCFF515FLJ/@@download/ENCFF515FLJ.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001MQA bigBed broadPeak peaks ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFL 271019 Ross Hardison, PennState ca90c0194bbdacf5e638d5acc50a5526 https://www.encodeproject.org/files/ENCFF001MQA/@@download/ENCFF001MQA.bigBed mm9 released ENCFF001MQB bigWig signal ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4958631967 Ross Hardison, PennState c00d22cde05c59b1332760379c5adf12 https://www.encodeproject.org/files/ENCFF001MQB/@@download/ENCFF001MQB.bigWig mm9 released missing derived_from ENCFF001MQC bam alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQL 3600124204 Ross Hardison, PennState 3150852f9338a761e5d0daa662b9c509 https://www.encodeproject.org/files/ENCFF001MQC/@@download/ENCFF001MQC.bam mm9 released ENCFF001MQL fastq reads ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 55 single-ended 3106530238 Ross Hardison, PennState a250a47f04846259c8aaf75d3678cf3f https://www.encodeproject.org/files/ENCFF001MQL/@@download/ENCFF001MQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MRC/ released inconsistent control read length ENCFF001YFL bed broadPeak peaks ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 124805 Ross Hardison, PennState caff88d304aaad703cdb5ce329a5b688 https://www.encodeproject.org/files/ENCFF001YFL/@@download/ENCFF001YFL.bed.gz mm9 released missing derived_from ENCFF793QXG bam unfiltered alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQL, ENCFF018NEO 3398438320 ENCODE Processing Pipeline b8186b5279fbbbf7955bb1bbc46b40f2 https://www.encodeproject.org/files/ENCFF793QXG/@@download/ENCFF793QXG.bam mm10 released ENCFF944TDI bam alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQL, ENCFF018NEO 2370441366 ENCODE Processing Pipeline 540cb4fdfed5ba39358fb18ad7f4e484 https://www.encodeproject.org/files/ENCFF944TDI/@@download/ENCFF944TDI.bam mm10 released ENCFF001NVU bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NVW 386345948 Michael Snyder, Stanford 315d5a4e269fea40099daf4bf34eee90 https://www.encodeproject.org/files/ENCFF001NVU/@@download/ENCFF001NVU.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NVV bigBed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJT 259139 Michael Snyder, Stanford dfc62a0c1fc9fc21b575bdcf44c88a0a https://www.encodeproject.org/files/ENCFF001NVV/@@download/ENCFF001NVV.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NVW fastq reads ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 767689481 Michael Snyder, Stanford 1850b9b47da77d5a2576b86de2b11d12 https://www.encodeproject.org/files/ENCFF001NVW/@@download/ENCFF001NVW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NVY bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NVZ 446217082 Michael Snyder, Stanford 576d56f9591b2e4935ea846f2fdebb44 https://www.encodeproject.org/files/ENCFF001NVY/@@download/ENCFF001NVY.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NVZ fastq reads ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 799975072 Michael Snyder, Stanford 3c9048a96bbfd96dc326f01130147e4a https://www.encodeproject.org/files/ENCFF001NVZ/@@download/ENCFF001NVZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NWB bigWig signal ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NVU, ENCFF001NVY 405324426 Michael Snyder, Stanford 9a60f4d720c5b0f14d8165172f987b81 https://www.encodeproject.org/files/ENCFF001NWB/@@download/ENCFF001NWB.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001YJT bed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NVU, ENCFF001NVY 108313 Michael Snyder, Stanford b638415408803744dae44414db1b8583 https://www.encodeproject.org/files/ENCFF001YJT/@@download/ENCFF001YJT.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF554FDZ bam unfiltered alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NVW, ENCFF018NEO 852662830 ENCODE Processing Pipeline f01f45bb90468a4d38efbe326deb8b08 https://www.encodeproject.org/files/ENCFF554FDZ/@@download/ENCFF554FDZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF605SCI bam unfiltered alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NVZ, ENCFF018NEO 879313284 ENCODE Processing Pipeline 5d0315ee72c52a1252dd00d220635075 https://www.encodeproject.org/files/ENCFF605SCI/@@download/ENCFF605SCI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF842AGG bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NVW, ENCFF018NEO 557404609 ENCODE Processing Pipeline 082ee9c5e110298e08badecab65b9af5 https://www.encodeproject.org/files/ENCFF842AGG/@@download/ENCFF842AGG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF694NOV bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NVZ, ENCFF018NEO 596562091 ENCODE Processing Pipeline 6e2d8f77d0036201f73c0c6faa7a5307 https://www.encodeproject.org/files/ENCFF694NOV/@@download/ENCFF694NOV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF400WDO bigWig signal p-value ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF842AGG 304270045 ENCODE Processing Pipeline 14f5b92562dc337b408edd1883b0d713 https://www.encodeproject.org/files/ENCFF400WDO/@@download/ENCFF400WDO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF256QWW bigWig signal p-value ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF694NOV 316660477 ENCODE Processing Pipeline a5c1f13dc92ceaba521ce2e02d5681ef https://www.encodeproject.org/files/ENCFF256QWW/@@download/ENCFF256QWW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF403TUS bigWig signal p-value ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF694NOV, ENCFF842AGG 359084097 ENCODE Processing Pipeline 4428483ba2b6d804b83751171f9bac8d https://www.encodeproject.org/files/ENCFF403TUS/@@download/ENCFF403TUS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF691PMV bed narrowPeak conservative idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF177BJJ, ENCFF520IHS, ENCFF547MET, ENCFF551YJH 352249 ENCODE Processing Pipeline dbff65fa9867919ce3117f6356b5cd1b https://www.encodeproject.org/files/ENCFF691PMV/@@download/ENCFF691PMV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF516TXJ bigWig fold change over control ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF694NOV 285777325 ENCODE Processing Pipeline cc5768aa65817333d4e23cbe0664a351 https://www.encodeproject.org/files/ENCFF516TXJ/@@download/ENCFF516TXJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF844UNO bigBed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF520IHS 12798218 ENCODE Processing Pipeline e16363446300d95feccfd67e6288a26c https://www.encodeproject.org/files/ENCFF844UNO/@@download/ENCFF844UNO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF956SFX bigWig fold change over control ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF842AGG 271513399 ENCODE Processing Pipeline 2ad692e41c88765194257fc0fd4c8f0a https://www.encodeproject.org/files/ENCFF956SFX/@@download/ENCFF956SFX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF591TEI bigWig fold change over control ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF694NOV, ENCFF842AGG 474790975 ENCODE Processing Pipeline bcbec8dbd92881ef0ebe9bcd9336a418 https://www.encodeproject.org/files/ENCFF591TEI/@@download/ENCFF591TEI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF551YJH bed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF694NOV, ENCFF842AGG 6129959 ENCODE Processing Pipeline 6ad257f5af0733a2e43981ac937153c0 https://www.encodeproject.org/files/ENCFF551YJH/@@download/ENCFF551YJH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF652ELP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF691PMV 787512 ENCODE Processing Pipeline fff883aa04d0b97e0c59daed1c62b08f https://www.encodeproject.org/files/ENCFF652ELP/@@download/ENCFF652ELP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF642MTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF647MPR 840202 ENCODE Processing Pipeline c8fc9316543d7184e8af01bed020b70d https://www.encodeproject.org/files/ENCFF642MTJ/@@download/ENCFF642MTJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF358BAT bigBed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF177BJJ 12795027 ENCODE Processing Pipeline 71297f9f6905cd5d7216e185a1f4c5b4 https://www.encodeproject.org/files/ENCFF358BAT/@@download/ENCFF358BAT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF482PXD bigBed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF551YJH 12981454 ENCODE Processing Pipeline 3a880b4800b2764194e096d50a0d6c3c https://www.encodeproject.org/files/ENCFF482PXD/@@download/ENCFF482PXD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF520IHS bed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF842AGG 5472833 ENCODE Processing Pipeline 0ca2973cc45523acc952cfc473d2e604 https://www.encodeproject.org/files/ENCFF520IHS/@@download/ENCFF520IHS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF177BJJ bed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF694NOV 5397147 ENCODE Processing Pipeline ad6e781e7153a5e268b6a41005c80b0b https://www.encodeproject.org/files/ENCFF177BJJ/@@download/ENCFF177BJJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF647MPR bed narrowPeak optimal idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF177BJJ, ENCFF520IHS, ENCFF547MET, ENCFF551YJH 380295 ENCODE Processing Pipeline f125cafb194dd7d0f5b67a55ae32d588 https://www.encodeproject.org/files/ENCFF647MPR/@@download/ENCFF647MPR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MQD bam alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQJ 1869394149 Ross Hardison, PennState b68a85d09e3d63bf86db6eb458c188ff https://www.encodeproject.org/files/ENCFF001MQD/@@download/ENCFF001MQD.bam mm9 released low read length, inconsistent platforms ENCFF001MQE bigBed broadPeak peaks ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFM 697650 Ross Hardison, PennState e943ea70133b2bbe47cb5a5223158dcc https://www.encodeproject.org/files/ENCFF001MQE/@@download/ENCFF001MQE.bigBed mm9 released low read length, inconsistent platforms ENCFF001MQF bigWig signal ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4136119102 Ross Hardison, PennState fb9be00d4dd44b1edc8da2e35d5ad41c https://www.encodeproject.org/files/ENCFF001MQF/@@download/ENCFF001MQF.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MQJ fastq reads ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1491664196 Ross Hardison, PennState e0df3054745b02a795bbacb9458f4449 https://www.encodeproject.org/files/ENCFF001MQJ/@@download/ENCFF001MQJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MRH/ released low read length, inconsistent control read length, inconsistent platforms ENCFF001YFM bed broadPeak peaks ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 349836 Ross Hardison, PennState 3b75f1250b240d7d67e50352cfb8de84 https://www.encodeproject.org/files/ENCFF001YFM/@@download/ENCFF001YFM.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF940KUK bam unfiltered alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQJ, ENCFF018NEO 1962312023 ENCODE Processing Pipeline b0954e0e4e8bf9f7757c8f2ad989ad56 https://www.encodeproject.org/files/ENCFF940KUK/@@download/ENCFF940KUK.bam mm10 released low read length, inconsistent platforms ENCFF054PYK bam alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQJ, ENCFF018NEO 1378213180 ENCODE Processing Pipeline c4fd930589ffcd9d2297a58ddcd478df https://www.encodeproject.org/files/ENCFF054PYK/@@download/ENCFF054PYK.bam mm10 released low read length, inconsistent platforms ENCFF001NKO bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NKQ 605853076 Michael Snyder, Stanford 79f5314e39afc0cd7c23e7a644b36def https://www.encodeproject.org/files/ENCFF001NKO/@@download/ENCFF001NKO.bam mm9 released low read length, inconsistent platforms ENCFF001NKP bigBed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YIM 1089806 Michael Snyder, Stanford 8e85513b6ce0d05a880c25e79f7e32f3 https://www.encodeproject.org/files/ENCFF001NKP/@@download/ENCFF001NKP.bigBed mm9 released low read length, inconsistent platforms ENCFF001NKQ fastq reads ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1280247499 Michael Snyder, Stanford b9e36b7ff3b896c553c37856a679242b https://www.encodeproject.org/files/ENCFF001NKQ/@@download/ENCFF001NKQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms ENCFF001NKS fastq reads ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1245250757 Michael Snyder, Stanford ddca465e7c9f6e1fb66420b07454df18 https://www.encodeproject.org/files/ENCFF001NKS/@@download/ENCFF001NKS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms ENCFF001NKU bigWig signal ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NKO, ENCFF001NKW 403870554 Michael Snyder, Stanford 4d9b06e3e863a6aedc30c655b729a098 https://www.encodeproject.org/files/ENCFF001NKU/@@download/ENCFF001NKU.bigWig mm9 released low read length, inconsistent platforms ENCFF001NKW bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NKS 611321000 Michael Snyder, Stanford fd7e3877b15456746bd310f5aa19cba6 https://www.encodeproject.org/files/ENCFF001NKW/@@download/ENCFF001NKW.bam mm9 released low read length, inconsistent platforms ENCFF001YIM bed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NKO, ENCFF001NKW 497016 Michael Snyder, Stanford dcd95e0d63fa0a5677ef0f85f53ff257 https://www.encodeproject.org/files/ENCFF001YIM/@@download/ENCFF001YIM.bed.gz mm9 released low read length, inconsistent platforms ENCFF236BQA bam unfiltered alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NKQ, ENCFF018NEO 1388456762 ENCODE Processing Pipeline 9b8a9078c8d017b37d0e45448b7bb2ee https://www.encodeproject.org/files/ENCFF236BQA/@@download/ENCFF236BQA.bam mm10 released low read length, inconsistent platforms ENCFF226KVK bam unfiltered alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NKS, ENCFF018NEO 1353940726 ENCODE Processing Pipeline ccec2f91108c3a13d24ab75277457d47 https://www.encodeproject.org/files/ENCFF226KVK/@@download/ENCFF226KVK.bam mm10 released low read length, inconsistent platforms ENCFF351KUA bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NKS, ENCFF018NEO 927196561 ENCODE Processing Pipeline 86b03e93762d2afa6271865b28ebf94c https://www.encodeproject.org/files/ENCFF351KUA/@@download/ENCFF351KUA.bam mm10 released low read length, inconsistent platforms ENCFF848TVS bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NKQ, ENCFF018NEO 968236432 ENCODE Processing Pipeline 1c24d67a530793d47394bbc07a529b7f https://www.encodeproject.org/files/ENCFF848TVS/@@download/ENCFF848TVS.bam mm10 released low read length, inconsistent platforms ENCFF638JIL bigWig signal p-value ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF848TVS 225095003 ENCODE Processing Pipeline 9cfea3c64fb50b14455fafd5c2e85333 https://www.encodeproject.org/files/ENCFF638JIL/@@download/ENCFF638JIL.bigWig mm10 released low read length, inconsistent platforms ENCFF926COJ bigWig signal p-value ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF351KUA 218469938 ENCODE Processing Pipeline 0e4b2961beb4b2f4051cbeadc777ce93 https://www.encodeproject.org/files/ENCFF926COJ/@@download/ENCFF926COJ.bigWig mm10 released low read length, inconsistent platforms ENCFF592MUJ bigWig signal p-value ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF351KUA, ENCFF848TVS 210985020 ENCODE Processing Pipeline 386229c54abac40cb61597c3410f6033 https://www.encodeproject.org/files/ENCFF592MUJ/@@download/ENCFF592MUJ.bigWig mm10 released low read length, inconsistent platforms ENCFF428DGW bigWig fold change over control ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF848TVS 369391271 ENCODE Processing Pipeline 85c188389ef9e3d3eaff3f31ad30ec04 https://www.encodeproject.org/files/ENCFF428DGW/@@download/ENCFF428DGW.bigWig mm10 released low read length, inconsistent platforms ENCFF659WQU bigWig fold change over control ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF351KUA, ENCFF848TVS 602600120 ENCODE Processing Pipeline 12f901046c404ea25cfd0d8e5018cea0 https://www.encodeproject.org/files/ENCFF659WQU/@@download/ENCFF659WQU.bigWig mm10 released low read length, inconsistent platforms ENCFF821USP bigWig fold change over control ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF351KUA 344161110 ENCODE Processing Pipeline 41750f7c442f2c0e4b61f50c89861492 https://www.encodeproject.org/files/ENCFF821USP/@@download/ENCFF821USP.bigWig mm10 released low read length, inconsistent platforms ENCFF221YDR bed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF848TVS 5763355 ENCODE Processing Pipeline 80b341f1137a761e125cb469fcdb1e13 https://www.encodeproject.org/files/ENCFF221YDR/@@download/ENCFF221YDR.bed.gz mm10 released low read length, inconsistent platforms ENCFF943ETE bed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF351KUA, ENCFF848TVS 6443809 ENCODE Processing Pipeline 7df255e7d2ff9a7c810accb597141571 https://www.encodeproject.org/files/ENCFF943ETE/@@download/ENCFF943ETE.bed.gz mm10 released low read length, inconsistent platforms ENCFF488GVO bed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF351KUA 6078959 ENCODE Processing Pipeline 1cf1736830889f5ecca50d717feb157e https://www.encodeproject.org/files/ENCFF488GVO/@@download/ENCFF488GVO.bed.gz mm10 released low read length, inconsistent platforms ENCFF776VNT bigBed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF221YDR 12949389 ENCODE Processing Pipeline 356d08b3572b000ce4796c988af0204f https://www.encodeproject.org/files/ENCFF776VNT/@@download/ENCFF776VNT.bigBed mm10 released low read length, inconsistent platforms ENCFF128TGM bed narrowPeak optimal idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF221YDR, ENCFF488GVO, ENCFF547MET, ENCFF943ETE 701782 ENCODE Processing Pipeline 72d81a98572e04580758a41d0bc06113 https://www.encodeproject.org/files/ENCFF128TGM/@@download/ENCFF128TGM.bed.gz mm10 released low read length, inconsistent platforms ENCFF416GDW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF639TIV 1518950 ENCODE Processing Pipeline 1201c5496530257a9c7ee2c31684af06 https://www.encodeproject.org/files/ENCFF416GDW/@@download/ENCFF416GDW.bigBed mm10 released low read length, inconsistent platforms ENCFF115WDT bigBed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF488GVO 12810642 ENCODE Processing Pipeline 33b1c97c0f554961254052bad6479d7d https://www.encodeproject.org/files/ENCFF115WDT/@@download/ENCFF115WDT.bigBed mm10 released low read length, inconsistent platforms ENCFF814BIS bigBed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF943ETE 12702950 ENCODE Processing Pipeline 76ac4819304994e2ebc686fa09dfd7b7 https://www.encodeproject.org/files/ENCFF814BIS/@@download/ENCFF814BIS.bigBed mm10 released low read length, inconsistent platforms ENCFF639TIV bed narrowPeak conservative idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF221YDR, ENCFF488GVO, ENCFF547MET, ENCFF943ETE 661828 ENCODE Processing Pipeline 6ef10011d83f6ac5e73217d5b55c8d2d https://www.encodeproject.org/files/ENCFF639TIV/@@download/ENCFF639TIV.bed.gz mm10 released low read length, inconsistent platforms ENCFF882IFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF128TGM 1597386 ENCODE Processing Pipeline f9aa81374ef47be354d9b2d917c74487 https://www.encodeproject.org/files/ENCFF882IFI/@@download/ENCFF882IFI.bigBed mm10 released low read length, inconsistent platforms ENCFF001NUQ bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NVQ 274327540 Michael Snyder, Stanford 3e1217d8fa60fca5133c761368016b6c https://www.encodeproject.org/files/ENCFF001NUQ/@@download/ENCFF001NUQ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NUR bigBed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJP 146957 Michael Snyder, Stanford f36483391a81c5e5ee312254940aac23 https://www.encodeproject.org/files/ENCFF001NUR/@@download/ENCFF001NUR.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NUS bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NVR 341046035 Michael Snyder, Stanford 7fb5dc62fa91aa1aa7e93a2290e483b9 https://www.encodeproject.org/files/ENCFF001NUS/@@download/ENCFF001NUS.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NUU bigWig signal ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NUQ, ENCFF001NUS 255524536 Michael Snyder, Stanford f33e5836482854e27f1c4933697366bc https://www.encodeproject.org/files/ENCFF001NUU/@@download/ENCFF001NUU.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NVQ fastq reads ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1096915730 Michael Snyder, Stanford 551d771460f19252ff0f57004d802032 https://www.encodeproject.org/files/ENCFF001NVQ/@@download/ENCFF001NVQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NVR fastq reads ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 955289943 Michael Snyder, Stanford b86c808a23e2c7cb214b4b4cc72792ed https://www.encodeproject.org/files/ENCFF001NVR/@@download/ENCFF001NVR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001YJP bed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NUQ, ENCFF001NUS 39622 Michael Snyder, Stanford ef4ed830452c2931ca21e50a4a96b1de https://www.encodeproject.org/files/ENCFF001YJP/@@download/ENCFF001YJP.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF230GBO bam unfiltered alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVQ, ENCFF018NEO 1210867924 ENCODE Processing Pipeline 30c94c65841a671a4b0252bd7ca66d07 https://www.encodeproject.org/files/ENCFF230GBO/@@download/ENCFF230GBO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF422MYV bam unfiltered alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVR, ENCFF018NEO 1112190733 ENCODE Processing Pipeline efd914ed7067d88bd830fa8e4532ac10 https://www.encodeproject.org/files/ENCFF422MYV/@@download/ENCFF422MYV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF442YKL bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVQ, ENCFF018NEO 542742812 ENCODE Processing Pipeline 855c921b2393571e054273d6aeee6bbc https://www.encodeproject.org/files/ENCFF442YKL/@@download/ENCFF442YKL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF106BFG bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVR, ENCFF018NEO 640421622 ENCODE Processing Pipeline 658267062caf03d056a39ca3cb671497 https://www.encodeproject.org/files/ENCFF106BFG/@@download/ENCFF106BFG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF673UJE bigWig fold change over control ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF106BFG, ENCFF171OVT, ENCFF442YKL 405611475 ENCODE Processing Pipeline 653945739c1ecfa76d42a02161c25031 https://www.encodeproject.org/files/ENCFF673UJE/@@download/ENCFF673UJE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF210AMG bigBed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF900VBP 9742909 ENCODE Processing Pipeline 1bc68bc306903a08f7268d95858682c3 https://www.encodeproject.org/files/ENCFF210AMG/@@download/ENCFF210AMG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF889LZC bigWig signal p-value ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF106BFG, ENCFF171OVT 257825696 ENCODE Processing Pipeline 03c038857753f82b6960a8c13f834e25 https://www.encodeproject.org/files/ENCFF889LZC/@@download/ENCFF889LZC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF302XAM bigWig signal p-value ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF106BFG, ENCFF171OVT, ENCFF442YKL 311205459 ENCODE Processing Pipeline 4e4ec2ddacfc2f23dc3326576ccc784a https://www.encodeproject.org/files/ENCFF302XAM/@@download/ENCFF302XAM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF053BUD bed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF106BFG, ENCFF171OVT, ENCFF442YKL 5357881 ENCODE Processing Pipeline da70c6985f9389f15ad9035706341a08 https://www.encodeproject.org/files/ENCFF053BUD/@@download/ENCFF053BUD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF498IBK bigBed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF186EFZ 10411958 ENCODE Processing Pipeline 9f03180d07524f62abd8c57b73107fb7 https://www.encodeproject.org/files/ENCFF498IBK/@@download/ENCFF498IBK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF370SHD bigWig fold change over control ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF106BFG, ENCFF171OVT 258475398 ENCODE Processing Pipeline b7f5928a4fc70d4613d92da8ac74fd64 https://www.encodeproject.org/files/ENCFF370SHD/@@download/ENCFF370SHD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF690ZGB bigWig signal p-value ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF442YKL 256895159 ENCODE Processing Pipeline 065464874537a3e057595977883c3feb https://www.encodeproject.org/files/ENCFF690ZGB/@@download/ENCFF690ZGB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF480ILK bigWig fold change over control ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF442YKL 221572529 ENCODE Processing Pipeline a10104891b406c51a7f3a8d86e38be43 https://www.encodeproject.org/files/ENCFF480ILK/@@download/ENCFF480ILK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF900VBP bed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF442YKL 4170389 ENCODE Processing Pipeline f348fa1f8fc0b519e04947da8b35f640 https://www.encodeproject.org/files/ENCFF900VBP/@@download/ENCFF900VBP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF802GKY bed narrowPeak conservative idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF053BUD, ENCFF186EFZ, ENCFF547MET, ENCFF900VBP 109320 ENCODE Processing Pipeline b6c0b8fd9f601e29fea4a6d469b895b7 https://www.encodeproject.org/files/ENCFF802GKY/@@download/ENCFF802GKY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF299TLS bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF802GKY 251919 ENCODE Processing Pipeline aacf64b0cd948f5503ed482275ad4f55 https://www.encodeproject.org/files/ENCFF299TLS/@@download/ENCFF299TLS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF373GVF bigBed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF053BUD 13011499 ENCODE Processing Pipeline 6abb7a722f75588387d5bc508fad9463 https://www.encodeproject.org/files/ENCFF373GVF/@@download/ENCFF373GVF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF589AAH bed narrowPeak optimal idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF053BUD, ENCFF186EFZ, ENCFF547MET, ENCFF900VBP 135761 ENCODE Processing Pipeline c64ddd8c3be9e1c1649a1807c4547365 https://www.encodeproject.org/files/ENCFF589AAH/@@download/ENCFF589AAH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF939XTW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF589AAH 290626 ENCODE Processing Pipeline a7d03e45fab27de75fe233e1e287bb21 https://www.encodeproject.org/files/ENCFF939XTW/@@download/ENCFF939XTW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF186EFZ bed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF106BFG, ENCFF171OVT 4763675 ENCODE Processing Pipeline 8c131b4bd4258094e93c230bd1313971 https://www.encodeproject.org/files/ENCFF186EFZ/@@download/ENCFF186EFZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001MMG bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MMN 1808685495 Ross Hardison, PennState d710b0fecfee7bc8d6d1c60a7f4a4a9f https://www.encodeproject.org/files/ENCFF001MMG/@@download/ENCFF001MMG.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMI bigBed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEN 272656 Ross Hardison, PennState b9c67b5459a7fc600ef6ca4ff80ba393 https://www.encodeproject.org/files/ENCFF001MMI/@@download/ENCFF001MMI.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMJ bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MMR 4887617336 Ross Hardison, PennState b8d44593ae622ef4af732b5cd2787337 https://www.encodeproject.org/files/ENCFF001MMJ/@@download/ENCFF001MMJ.bam mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMK bigBed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEO 290521 Ross Hardison, PennState 1f8ff5486c935b781058562efb3678f7 https://www.encodeproject.org/files/ENCFF001MMK/@@download/ENCFF001MMK.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MML bigBed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEP 249555 Ross Hardison, PennState 3e38807b6425271510e84aa73efeba7b https://www.encodeproject.org/files/ENCFF001MML/@@download/ENCFF001MML.bigBed mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMM bigWig signal ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4344138400 Ross Hardison, PennState 184745560224cae5ab20ba67fdbad87a https://www.encodeproject.org/files/ENCFF001MMM/@@download/ENCFF001MMM.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MMN fastq reads ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1454017901 Ross Hardison, PennState aea61365ec4d36dfc069a18a8c6835f1 https://www.encodeproject.org/files/ENCFF001MMN/@@download/ENCFF001MMN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MMU/ released low read length, mixed read lengths, inconsistent platforms ENCFF001MMO bigWig signal ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5255183628 Ross Hardison, PennState e14035e0b530fc62ac9701a83dc4a0c5 https://www.encodeproject.org/files/ENCFF001MMO/@@download/ENCFF001MMO.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MMP bigWig signal ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 6037889005 Ross Hardison, PennState 560b8bbdd19ccf638b2d3583f61d6b59 https://www.encodeproject.org/files/ENCFF001MMP/@@download/ENCFF001MMP.bigWig mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001MMR fastq reads ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 4259122986 Ross Hardison, PennState aa0c4fea1e9363807eb250de135bf26d https://www.encodeproject.org/files/ENCFF001MMR/@@download/ENCFF001MMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, mixed read lengths, inconsistent control read length, inconsistent platforms ENCFF001YEN bed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 128708 Ross Hardison, PennState 0e0f66a5ba556556f17446eba4e511c0 https://www.encodeproject.org/files/ENCFF001YEN/@@download/ENCFF001YEN.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YEO bed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 136290 Ross Hardison, PennState 6b01ed2a628768d5e8a031949b0e00e0 https://www.encodeproject.org/files/ENCFF001YEO/@@download/ENCFF001YEO.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF001YEP bed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 102077 Ross Hardison, PennState d03450ff31046c39cd5214e6df6eaa71 https://www.encodeproject.org/files/ENCFF001YEP/@@download/ENCFF001YEP.bed.gz mm9 archived low read length, mixed read lengths, inconsistent platforms missing derived_from ENCFF689CPK bigWig signal p-value ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF311BIT, ENCFF887UBK 363112012 ENCODE Processing Pipeline 28de97ce0a1696812538816daac79b5f https://www.encodeproject.org/files/ENCFF689CPK/@@download/ENCFF689CPK.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF606CFC bigWig fold change over control ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF311BIT, ENCFF887UBK 465146954 ENCODE Processing Pipeline 589d36b54164db52dbf4c72006f12aed https://www.encodeproject.org/files/ENCFF606CFC/@@download/ENCFF606CFC.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF450NAD bigBed narrowPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF540LXX 11234209 ENCODE Processing Pipeline 45ea03dbc476c6b47168891c1679bb29 https://www.encodeproject.org/files/ENCFF450NAD/@@download/ENCFF450NAD.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF112ATZ bam unfiltered alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MMN, ENCFF018NEO 1905495681 ENCODE Processing Pipeline af22924234a57726e86987e910ae072e https://www.encodeproject.org/files/ENCFF112ATZ/@@download/ENCFF112ATZ.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF590MSF bam unfiltered alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MMR, ENCFF018NEO 4283060085 ENCODE Processing Pipeline 21f1081e74da5ea26717df779a6e093b https://www.encodeproject.org/files/ENCFF590MSF/@@download/ENCFF590MSF.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF311BIT bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MMN, ENCFF018NEO 1315058962 ENCODE Processing Pipeline 4e1dba33685dae1acbfb4570cca127c1 https://www.encodeproject.org/files/ENCFF311BIT/@@download/ENCFF311BIT.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF377TAN bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MMR, ENCFF018NEO 2922459392 ENCODE Processing Pipeline eef8f458818f28713f7d4524b25e1751 https://www.encodeproject.org/files/ENCFF377TAN/@@download/ENCFF377TAN.bam mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF089RDH bigWig signal p-value ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 908602261 ENCODE Processing Pipeline f8a2bce8d741354c8387ccb0e314ebc8 https://www.encodeproject.org/files/ENCFF089RDH/@@download/ENCFF089RDH.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF733FPO bigWig signal p-value ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF311BIT, ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 908317393 ENCODE Processing Pipeline f3d4dc1287ce12dd641c40680199b379 https://www.encodeproject.org/files/ENCFF733FPO/@@download/ENCFF733FPO.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF418WKA bigWig fold change over control ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 1054661335 ENCODE Processing Pipeline 4cd128823f8d5f111728c8bed3b40ea3 https://www.encodeproject.org/files/ENCFF418WKA/@@download/ENCFF418WKA.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF779AOL bigWig fold change over control ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF311BIT, ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 1344761714 ENCODE Processing Pipeline 29b6a2dbcac3575c6a22233ba74c3b5d https://www.encodeproject.org/files/ENCFF779AOL/@@download/ENCFF779AOL.bigWig mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF540LXX bed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF311BIT, ENCFF887UBK 5033172 ENCODE Processing Pipeline d76223b2779eee9be7e0dfa053b424e7 https://www.encodeproject.org/files/ENCFF540LXX/@@download/ENCFF540LXX.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF188TYP bed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 6173332 ENCODE Processing Pipeline fa65a8a406253a84fcc07ec06edea8ed https://www.encodeproject.org/files/ENCFF188TYP/@@download/ENCFF188TYP.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF407FNA bigBed narrowPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF337HVO 11212641 ENCODE Processing Pipeline 25606095c04e1f64b8cef8ef7c2b40cf https://www.encodeproject.org/files/ENCFF407FNA/@@download/ENCFF407FNA.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF337HVO bed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF311BIT, ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 6736188 ENCODE Processing Pipeline 40e1e899f7eff54f1bf4fcb6243f2730 https://www.encodeproject.org/files/ENCFF337HVO/@@download/ENCFF337HVO.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF162EBI bed narrowPeak optimal idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF188TYP, ENCFF337HVO, ENCFF540LXX, ENCFF547MET 138232 ENCODE Processing Pipeline b87d70d97d4c620ea0c896ebc17a62a0 https://www.encodeproject.org/files/ENCFF162EBI/@@download/ENCFF162EBI.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF585PTU bigBed narrowPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF188TYP 11329863 ENCODE Processing Pipeline d4e22d161717b1505c94e85679cc1a5c https://www.encodeproject.org/files/ENCFF585PTU/@@download/ENCFF585PTU.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF021JFS bed narrowPeak conservative idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF188TYP, ENCFF337HVO, ENCFF540LXX, ENCFF547MET 125123 ENCODE Processing Pipeline 87454570c7ee2ce496cec27ac19c6c86 https://www.encodeproject.org/files/ENCFF021JFS/@@download/ENCFF021JFS.bed.gz mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF791XHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF021JFS 282740 ENCODE Processing Pipeline 963b94cca1e4a50dabcf6ce51d630fbe https://www.encodeproject.org/files/ENCFF791XHJ/@@download/ENCFF791XHJ.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF932URR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF162EBI 302123 ENCODE Processing Pipeline f58067c8fe47f1ed09a41596ef44afd7 https://www.encodeproject.org/files/ENCFF932URR/@@download/ENCFF932URR.bigBed mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF001ZQP fastq reads ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 45 single-ended 2020172004 Ross Hardison, PennState e2c38e995d900af5e47f7a34e1697a53 https://www.encodeproject.org/files/ENCFF001ZQP/@@download/ENCFF001ZQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length experiment not submitted to GEO ENCFF001ZQQ bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 5131202717 Ross Hardison, PennState 65b5bd8deef44fc4123cb82e4e80726d https://www.encodeproject.org/files/ENCFF001ZQQ/@@download/ENCFF001ZQQ.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQR fastq reads ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 45 single-ended 1881057794 Ross Hardison, PennState f671bc9e7c2d8675575d5fd5c34ef411 https://www.encodeproject.org/files/ENCFF001ZQR/@@download/ENCFF001ZQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length experiment not submitted to GEO ENCFF001ZQS bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 4999620112 Ross Hardison, PennState 1552038522a8099daa7da4a1ff8c6061 https://www.encodeproject.org/files/ENCFF001ZQS/@@download/ENCFF001ZQS.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQT bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 5888784483 Ross Hardison, PennState a82db6b0cde3c6211553ad882f82e514 https://www.encodeproject.org/files/ENCFF001ZQT/@@download/ENCFF001ZQT.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQU bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF001ZQP 2522573944 Ross Hardison, PennState 5aca639ae3857b1f2b2f994961e4f843 https://www.encodeproject.org/files/ENCFF001ZQU/@@download/ENCFF001ZQU.bam mm9 released low read length experiment not submitted to GEO ENCFF001ZQV bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF001ZQR 2338799625 Ross Hardison, PennState aa0db315d16d64a4a62e83c2d7f59068 https://www.encodeproject.org/files/ENCFF001ZQV/@@download/ENCFF001ZQV.bam mm9 released low read length experiment not submitted to GEO ENCFF001ZQW bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 1065186 Ross Hardison, PennState 5550327f5287c362f8ff734a757b4d48 https://www.encodeproject.org/files/ENCFF001ZQW/@@download/ENCFF001ZQW.bigBed mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQX bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 1053597 Ross Hardison, PennState d548ba882c6563468a80757cf2ebe2ea https://www.encodeproject.org/files/ENCFF001ZQX/@@download/ENCFF001ZQX.bigBed mm9 released low read length experiment not submitted to GEO, missing derived_from ENCFF001ZQY bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1093940 Ross Hardison, PennState d3956e42bcc32d1a081776c2f21f6236 https://www.encodeproject.org/files/ENCFF001ZQY/@@download/ENCFF001ZQY.bigBed mm9 released low read length experiment not submitted to GEO, missing derived_from ENCFF001ZQZ bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 4810630627 Ross Hardison, PennState 12f3a8b853b4877820a647d23d07aee2 https://www.encodeproject.org/files/ENCFF001ZQZ/@@download/ENCFF001ZQZ.bam mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF854IVF bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE ENCFF001ZQY 607503 ENCODE Consortium 18e8677418137c2a7e85687803f77cdf https://www.encodeproject.org/files/ENCFF854IVF/@@download/ENCFF854IVF.bed.gz mm9 released low read length experiment not submitted to GEO ENCFF524XKU bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 ENCFF001ZQW 568432 ENCODE Consortium 4dff05cead4a5d08c20d3fdc2c0a96c7 https://www.encodeproject.org/files/ENCFF524XKU/@@download/ENCFF524XKU.bed.gz mm9 released low read length experiment not submitted to GEO ENCFF672RHI bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 ENCFF001ZQX 565404 ENCODE Consortium 60f0c82d77f15aae718dd680a17ecafc https://www.encodeproject.org/files/ENCFF672RHI/@@download/ENCFF672RHI.bed.gz mm9 released low read length experiment not submitted to GEO ENCFF572VLY bam unfiltered alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 2683659809 ENCODE Processing Pipeline 0ed064473d59418ae31dbe9093fa5f81 https://www.encodeproject.org/files/ENCFF572VLY/@@download/ENCFF572VLY.bam mm10 released low read length experiment not submitted to GEO ENCFF428HVQ bam unfiltered alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 2488582341 ENCODE Processing Pipeline 776cb2a1fbb8c694aa21d7ac518f4844 https://www.encodeproject.org/files/ENCFF428HVQ/@@download/ENCFF428HVQ.bam mm10 released low read length experiment not submitted to GEO ENCFF436KYT bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 1890769372 ENCODE Processing Pipeline 84bea82626b5ab83813c8acd85c8d55c https://www.encodeproject.org/files/ENCFF436KYT/@@download/ENCFF436KYT.bam mm10 released low read length experiment not submitted to GEO ENCFF890GFD bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 1689616186 ENCODE Processing Pipeline f4dc9c3f7ccb262d9f4600499a9ace36 https://www.encodeproject.org/files/ENCFF890GFD/@@download/ENCFF890GFD.bam mm10 released low read length experiment not submitted to GEO ENCFF962GJM bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 663878919 ENCODE Processing Pipeline 3fd2b7f8f12188bc9ed5333ed4dd1e94 https://www.encodeproject.org/files/ENCFF962GJM/@@download/ENCFF962GJM.bigWig mm10 released low read length experiment not submitted to GEO ENCFF452UXX bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 611528100 ENCODE Processing Pipeline b1c8db76b318532e80019a34f3d365fe https://www.encodeproject.org/files/ENCFF452UXX/@@download/ENCFF452UXX.bigWig mm10 released low read length experiment not submitted to GEO ENCFF989YLQ bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 1011640177 ENCODE Processing Pipeline 6e24b8861917a6fe44e05e66f18dbdfb https://www.encodeproject.org/files/ENCFF989YLQ/@@download/ENCFF989YLQ.bigWig mm10 released low read length experiment not submitted to GEO ENCFF454YWR bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 1245704177 ENCODE Processing Pipeline c69f514dd9f405b7d5ed62b92bab1080 https://www.encodeproject.org/files/ENCFF454YWR/@@download/ENCFF454YWR.bigWig mm10 released low read length experiment not submitted to GEO ENCFF785USF bigBed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF456EVZ 11303854 ENCODE Processing Pipeline 55ea75759b6d8573dd71346b7e923bea https://www.encodeproject.org/files/ENCFF785USF/@@download/ENCFF785USF.bigBed mm10 released low read length experiment not submitted to GEO ENCFF456EVZ bed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 5593614 ENCODE Processing Pipeline ff46e62ecf24428c612a4fef16a2e7c3 https://www.encodeproject.org/files/ENCFF456EVZ/@@download/ENCFF456EVZ.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF243PIS bed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 6630698 ENCODE Processing Pipeline e30108ebc095dfbc641cb5bff315fc9a https://www.encodeproject.org/files/ENCFF243PIS/@@download/ENCFF243PIS.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF345LJJ bigBed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF100ZNH 11295695 ENCODE Processing Pipeline 2dcfb7f470d225b5a6e11cf7a3ecdd49 https://www.encodeproject.org/files/ENCFF345LJJ/@@download/ENCFF345LJJ.bigBed mm10 released low read length experiment not submitted to GEO ENCFF832AQF bigBed narrowPeak optimal idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF347BWU 1222401 ENCODE Processing Pipeline a156e14cf9b5436d3fe94a6ce918a5bd https://www.encodeproject.org/files/ENCFF832AQF/@@download/ENCFF832AQF.bigBed mm10 released low read length experiment not submitted to GEO ENCFF327CNH bigBed narrowPeak conservative idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF969YUQ 1205121 ENCODE Processing Pipeline f3d6b6fc535b0b5fca054b7418c638c0 https://www.encodeproject.org/files/ENCFF327CNH/@@download/ENCFF327CNH.bigBed mm10 released low read length experiment not submitted to GEO ENCFF980QVK bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 727518986 ENCODE Processing Pipeline 3f6f1e6a7cb2d2f29b84af4cc0df32ec https://www.encodeproject.org/files/ENCFF980QVK/@@download/ENCFF980QVK.bigWig mm10 released low read length experiment not submitted to GEO ENCFF041KBA bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 663005041 ENCODE Processing Pipeline 7cf03795fe8c4f8762c7589762908319 https://www.encodeproject.org/files/ENCFF041KBA/@@download/ENCFF041KBA.bigWig mm10 released low read length experiment not submitted to GEO ENCFF100ZNH bed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 5330422 ENCODE Processing Pipeline fe1a16b6ee0908aa2013d0aa26f093ca https://www.encodeproject.org/files/ENCFF100ZNH/@@download/ENCFF100ZNH.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF803QSB bigBed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF243PIS 11546562 ENCODE Processing Pipeline 895d431357050407c1dde9ca7df3af91 https://www.encodeproject.org/files/ENCFF803QSB/@@download/ENCFF803QSB.bigBed mm10 released low read length experiment not submitted to GEO ENCFF969YUQ bed narrowPeak conservative idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF100ZNH, ENCFF243PIS, ENCFF456EVZ, ENCFF547MET 699733 ENCODE Processing Pipeline d0ac3193998502a5286322c99999ae85 https://www.encodeproject.org/files/ENCFF969YUQ/@@download/ENCFF969YUQ.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF347BWU bed narrowPeak optimal idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF100ZNH, ENCFF243PIS, ENCFF456EVZ, ENCFF547MET 713139 ENCODE Processing Pipeline be25fe80a8c1e6d77057eeffc0d7ec5f https://www.encodeproject.org/files/ENCFF347BWU/@@download/ENCFF347BWU.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF001NIN bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NIP 431523762 Michael Snyder, Stanford 060724bab77dc6fdf5250b376d54c94b https://www.encodeproject.org/files/ENCFF001NIN/@@download/ENCFF001NIN.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NIO bigBed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIE 1566596 Michael Snyder, Stanford 95a13592b5e43e2c38fdb8b46f53237f https://www.encodeproject.org/files/ENCFF001NIO/@@download/ENCFF001NIO.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NIP fastq reads ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 950892073 Michael Snyder, Stanford 201ab3402ae4068701aee662eaa580ec https://www.encodeproject.org/files/ENCFF001NIP/@@download/ENCFF001NIP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NIR bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NIS 456458854 Michael Snyder, Stanford ea2df0927dacc99c11b2798ec5fac7ac https://www.encodeproject.org/files/ENCFF001NIR/@@download/ENCFF001NIR.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NIS fastq reads ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 887267779 Michael Snyder, Stanford 47855420b6223eb8847c4a781f06bdfd https://www.encodeproject.org/files/ENCFF001NIS/@@download/ENCFF001NIS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NIU bigWig signal ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NIN, ENCFF001NIR 328446682 Michael Snyder, Stanford 776cf70b40646033e62d729195793516 https://www.encodeproject.org/files/ENCFF001NIU/@@download/ENCFF001NIU.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001YIE bed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NIN, ENCFF001NIR 653378 Michael Snyder, Stanford 319be710f54e38853d7de21e9feeed16 https://www.encodeproject.org/files/ENCFF001YIE/@@download/ENCFF001YIE.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF292CFP bam unfiltered alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NIS, ENCFF018NEO 970029547 ENCODE Processing Pipeline 0e71f736f6bed25c076f9fe594e0387a https://www.encodeproject.org/files/ENCFF292CFP/@@download/ENCFF292CFP.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF312SDO bam unfiltered alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NIP, ENCFF018NEO 994211503 ENCODE Processing Pipeline 753a2e6fbd0ab52462e7b89b93bc7dca https://www.encodeproject.org/files/ENCFF312SDO/@@download/ENCFF312SDO.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF969YRT bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NIS, ENCFF018NEO 659552769 ENCODE Processing Pipeline 1a19668d7e8269b91f6647ea3ccbc6d3 https://www.encodeproject.org/files/ENCFF969YRT/@@download/ENCFF969YRT.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF752EYZ bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NIP, ENCFF018NEO 586188844 ENCODE Processing Pipeline fa8f55d35fe8e22b98e517b661062965 https://www.encodeproject.org/files/ENCFF752EYZ/@@download/ENCFF752EYZ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF123FEC bigWig signal p-value ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF752EYZ 237626369 ENCODE Processing Pipeline a9c0e3a1fc0b7611f01afb02c734bf48 https://www.encodeproject.org/files/ENCFF123FEC/@@download/ENCFF123FEC.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF196ECE bigWig fold change over control ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF752EYZ 246418865 ENCODE Processing Pipeline 16b3323e8e9ef57b7fcee7dc1810acb2 https://www.encodeproject.org/files/ENCFF196ECE/@@download/ENCFF196ECE.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF739LTJ bigWig signal p-value ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF969YRT 232355843 ENCODE Processing Pipeline 458223c38a239d41a9baa0f3c960c293 https://www.encodeproject.org/files/ENCFF739LTJ/@@download/ENCFF739LTJ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF588GMG bigWig signal p-value ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF752EYZ, ENCFF969YRT 209148184 ENCODE Processing Pipeline 6c6a6abceb0890449028f49da410ed2d https://www.encodeproject.org/files/ENCFF588GMG/@@download/ENCFF588GMG.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF154GGD bigWig fold change over control ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF969YRT 279234730 ENCODE Processing Pipeline fd54342264b061396f179742b6ce75c2 https://www.encodeproject.org/files/ENCFF154GGD/@@download/ENCFF154GGD.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF334SDJ bed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF969YRT 5138953 ENCODE Processing Pipeline def08d96215283ae3aea5c45a10fee09 https://www.encodeproject.org/files/ENCFF334SDJ/@@download/ENCFF334SDJ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF283POK bigWig fold change over control ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF752EYZ, ENCFF969YRT 460064885 ENCODE Processing Pipeline 12341b4b35fc8bcfb5fe60f2258976c0 https://www.encodeproject.org/files/ENCFF283POK/@@download/ENCFF283POK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF436RKB bed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF752EYZ 3947811 ENCODE Processing Pipeline 5c69138b6b2f2de60e08d4dab6f9e362 https://www.encodeproject.org/files/ENCFF436RKB/@@download/ENCFF436RKB.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF268WMK bed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF752EYZ, ENCFF969YRT 5890090 ENCODE Processing Pipeline c711b6ce18d05f800d5981bb87206e97 https://www.encodeproject.org/files/ENCFF268WMK/@@download/ENCFF268WMK.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF041QIM bigBed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF436RKB 9461956 ENCODE Processing Pipeline ebaab249bb2cd1ad31b1dd423df04c5f https://www.encodeproject.org/files/ENCFF041QIM/@@download/ENCFF041QIM.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF611FZC bigBed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF334SDJ 12624787 ENCODE Processing Pipeline 1678f9f986dc0949ee41b88b85fbb9b7 https://www.encodeproject.org/files/ENCFF611FZC/@@download/ENCFF611FZC.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF110QFE bigBed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF268WMK 12816396 ENCODE Processing Pipeline 9bf00da98e5b15bc6b943325048b1aef https://www.encodeproject.org/files/ENCFF110QFE/@@download/ENCFF110QFE.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF448FEQ bed narrowPeak conservative idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF268WMK, ENCFF334SDJ, ENCFF436RKB, ENCFF547MET 359619 ENCODE Processing Pipeline b12db017e06ccabc32be1bc712b4f00f https://www.encodeproject.org/files/ENCFF448FEQ/@@download/ENCFF448FEQ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF614MFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF448FEQ 809819 ENCODE Processing Pipeline f763b20cd021596be71a990fc965eeeb https://www.encodeproject.org/files/ENCFF614MFN/@@download/ENCFF614MFN.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF906DFS bed narrowPeak optimal idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF268WMK, ENCFF334SDJ, ENCFF436RKB, ENCFF547MET 393347 ENCODE Processing Pipeline 8266a5880dae3cfafd756d4afe6e307e https://www.encodeproject.org/files/ENCFF906DFS/@@download/ENCFF906DFS.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF749BJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF906DFS 870041 ENCODE Processing Pipeline abceed81cf95cf6f58b7d31d39e3e190 https://www.encodeproject.org/files/ENCFF749BJO/@@download/ENCFF749BJO.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NSN bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NSQ 472064371 Michael Snyder, Stanford deefa333f936322dd38569d1efd9f49c https://www.encodeproject.org/files/ENCFF001NSN/@@download/ENCFF001NSN.bam mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NSO bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NSS 577967067 Michael Snyder, Stanford 9130e24921dc122c37b21f1af328c5c6 https://www.encodeproject.org/files/ENCFF001NSO/@@download/ENCFF001NSO.bam mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NSP bigBed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJN 163163 Michael Snyder, Stanford bea1cc661d60eeab8ade8f61b7244af5 https://www.encodeproject.org/files/ENCFF001NSP/@@download/ENCFF001NSP.bigBed mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NSQ fastq reads ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 920487504 Michael Snyder, Stanford 6fb1baea7318694adb55067f654a9b39 https://www.encodeproject.org/files/ENCFF001NSQ/@@download/ENCFF001NSQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NSS fastq reads ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1390380610 Michael Snyder, Stanford a4bd075033aef9015285de8d173d03d1 https://www.encodeproject.org/files/ENCFF001NSS/@@download/ENCFF001NSS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NSU bigWig signal ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSN, ENCFF001NSO 549388468 Michael Snyder, Stanford 303785d46d8341b4328e7b111bbcdc4b https://www.encodeproject.org/files/ENCFF001NSU/@@download/ENCFF001NSU.bigWig mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001YJN bed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSN, ENCFF001NSO 49911 Michael Snyder, Stanford 4101de7c1445d167b2573d4b27475230 https://www.encodeproject.org/files/ENCFF001YJN/@@download/ENCFF001YJN.bed.gz mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF263BNN bam unfiltered alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSQ, ENCFF018NEO 1034365583 ENCODE Processing Pipeline 439f4c73868c0a7d4074e98864fafd65 https://www.encodeproject.org/files/ENCFF263BNN/@@download/ENCFF263BNN.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF078QCR bam unfiltered alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NSS, ENCFF018NEO 1555901948 ENCODE Processing Pipeline 78571cdae608db81e66d1c3328b728a7 https://www.encodeproject.org/files/ENCFF078QCR/@@download/ENCFF078QCR.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF609VXJ bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSQ, ENCFF018NEO 713201107 ENCODE Processing Pipeline c81a15bd1992c2b93c2215e6cb7c8a45 https://www.encodeproject.org/files/ENCFF609VXJ/@@download/ENCFF609VXJ.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF839CIT bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NSS, ENCFF018NEO 1009588005 ENCODE Processing Pipeline 29ceb40f94999a433512f3f2232e4af1 https://www.encodeproject.org/files/ENCFF839CIT/@@download/ENCFF839CIT.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF517BOP bigWig signal p-value ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF609VXJ 334953569 ENCODE Processing Pipeline 51c355b5966949381f732048ad53b6bc https://www.encodeproject.org/files/ENCFF517BOP/@@download/ENCFF517BOP.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF915TBX bigWig fold change over control ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF609VXJ 329499595 ENCODE Processing Pipeline eb736521fca866beb5443ed5020b5c8d https://www.encodeproject.org/files/ENCFF915TBX/@@download/ENCFF915TBX.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF699YLJ bed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF839CIT 4773159 ENCODE Processing Pipeline a5711d0367bcab03be9533bae23698e1 https://www.encodeproject.org/files/ENCFF699YLJ/@@download/ENCFF699YLJ.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF262YAQ bed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF609VXJ 4894458 ENCODE Processing Pipeline 7b640f7d2aed4c2a8c9d609bcda7da10 https://www.encodeproject.org/files/ENCFF262YAQ/@@download/ENCFF262YAQ.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF520BUV bigWig signal p-value ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF609VXJ, ENCFF839CIT 337106614 ENCODE Processing Pipeline decd40ad6e16bda5ab645ffe690a5f2c https://www.encodeproject.org/files/ENCFF520BUV/@@download/ENCFF520BUV.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF276SCN bigWig fold change over control ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF839CIT 366781385 ENCODE Processing Pipeline 101d76ad5af65a2df5b70a5dbc37fcf4 https://www.encodeproject.org/files/ENCFF276SCN/@@download/ENCFF276SCN.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF013LGH bigWig fold change over control ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF609VXJ, ENCFF839CIT 602684921 ENCODE Processing Pipeline cb92bd6d56e9f5b1d78b1cabf3b6002e https://www.encodeproject.org/files/ENCFF013LGH/@@download/ENCFF013LGH.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF375ZYJ bed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF609VXJ, ENCFF839CIT 5620449 ENCODE Processing Pipeline 2127dab9b719c8ce33af27437bce1d81 https://www.encodeproject.org/files/ENCFF375ZYJ/@@download/ENCFF375ZYJ.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF579MRA bigBed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF262YAQ 10660812 ENCODE Processing Pipeline 70f98be12188b6078bf8104a92be723e https://www.encodeproject.org/files/ENCFF579MRA/@@download/ENCFF579MRA.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF350QGT bigBed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF699YLJ 10597366 ENCODE Processing Pipeline 43a6fcb43193d4c0d960fb133a0c2fad https://www.encodeproject.org/files/ENCFF350QGT/@@download/ENCFF350QGT.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF639AUY bigWig signal p-value ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF839CIT 311163953 ENCODE Processing Pipeline f9a787465027cb354642c155b51c45c1 https://www.encodeproject.org/files/ENCFF639AUY/@@download/ENCFF639AUY.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF672FKP bed narrowPeak optimal idr thresholded peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF262YAQ, ENCFF375ZYJ, ENCFF547MET, ENCFF699YLJ 122568 ENCODE Processing Pipeline 39c3f442a8640ad8caff33646eca95d6 https://www.encodeproject.org/files/ENCFF672FKP/@@download/ENCFF672FKP.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF790AUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF672FKP 276224 ENCODE Processing Pipeline 2be1cc1848857bdc670b33a97fa1f5ce https://www.encodeproject.org/files/ENCFF790AUX/@@download/ENCFF790AUX.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF456WXT bigBed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF375ZYJ 13055419 ENCODE Processing Pipeline 3ce399c7d2ffe6bb69337eb93a53bc06 https://www.encodeproject.org/files/ENCFF456WXT/@@download/ENCFF456WXT.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF332NMV fastq reads ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1328071421 Richard Myers, HAIB 581c4b94f6a1150c4b82e1e3af1e29fc SRA:SRR5111581 https://www.encodeproject.org/files/ENCFF332NMV/@@download/ENCFF332NMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF756GQQ/ released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF657QHM fastq reads ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1452650760 Richard Myers, HAIB d0b9ded6798473e446004863364350f9 SRA:SRR5111580 https://www.encodeproject.org/files/ENCFF657QHM/@@download/ENCFF657QHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF756GQQ/ released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF279PCQ bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF657QHM, ENCFF806TVZ 1063288502 ENCODE Processing Pipeline d5db14e605b324a554bf1c33a1bea85f https://www.encodeproject.org/files/ENCFF279PCQ/@@download/ENCFF279PCQ.bam mm10-minimal archived antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF338TRQ bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF332NMV, ENCFF806TVZ 986334312 ENCODE Processing Pipeline 8c522f08123279ba3295c07ee99b16d6 https://www.encodeproject.org/files/ENCFF338TRQ/@@download/ENCFF338TRQ.bam mm10-minimal archived antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF780QOO bam unfiltered alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 1350827024 ENCODE Processing Pipeline 07c61cdeb9093d2f32302f8dea461577 https://www.encodeproject.org/files/ENCFF780QOO/@@download/ENCFF780QOO.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF831GJV bam unfiltered alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1472718848 ENCODE Processing Pipeline 568afd6640e2ceebb1e4f907359bce31 https://www.encodeproject.org/files/ENCFF831GJV/@@download/ENCFF831GJV.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF574SPR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 986212519 ENCODE Processing Pipeline fcc8d750a649e2bdcf3324c117bc5f65 https://www.encodeproject.org/files/ENCFF574SPR/@@download/ENCFF574SPR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF504LSR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1063146494 ENCODE Processing Pipeline 1746eff7aba0cda39cdf462da537a0f0 https://www.encodeproject.org/files/ENCFF504LSR/@@download/ENCFF504LSR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF630JQR bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 350023451 ENCODE Processing Pipeline b8126c773068dc02cf60ec23b6da80ef https://www.encodeproject.org/files/ENCFF630JQR/@@download/ENCFF630JQR.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF410PVV bed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 5096078 ENCODE Processing Pipeline 1fd9ea151f684cc4f920ee4d0857fc43 https://www.encodeproject.org/files/ENCFF410PVV/@@download/ENCFF410PVV.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF461GJZ bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 381359210 ENCODE Processing Pipeline ce1198792ebcdf7ae7862e78687009b2 https://www.encodeproject.org/files/ENCFF461GJZ/@@download/ENCFF461GJZ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF709NWF bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 377467904 ENCODE Processing Pipeline c8110853023599dc2c135e7c3233797d https://www.encodeproject.org/files/ENCFF709NWF/@@download/ENCFF709NWF.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF616DGB bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 332867137 ENCODE Processing Pipeline 0429c277b3a972e6528af95a595847ba https://www.encodeproject.org/files/ENCFF616DGB/@@download/ENCFF616DGB.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF633LEJ bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 356456496 ENCODE Processing Pipeline b20a14ca9ec62febd714115eb1dd2a88 https://www.encodeproject.org/files/ENCFF633LEJ/@@download/ENCFF633LEJ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF985TTQ bed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 5736172 ENCODE Processing Pipeline c55ab0ba5257d335517c1ccdb3e2b7cf https://www.encodeproject.org/files/ENCFF985TTQ/@@download/ENCFF985TTQ.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF739QBQ bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 578107703 ENCODE Processing Pipeline e91031b80abb99e8aa72713c97b6fc88 https://www.encodeproject.org/files/ENCFF739QBQ/@@download/ENCFF739QBQ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF707HGS bed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 4995255 ENCODE Processing Pipeline 76cb3926bf9bd430db6e194278407f59 https://www.encodeproject.org/files/ENCFF707HGS/@@download/ENCFF707HGS.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF843LFB bigBed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF707HGS 10976294 ENCODE Processing Pipeline b13ed64b132960432d86b714abec538b https://www.encodeproject.org/files/ENCFF843LFB/@@download/ENCFF843LFB.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF167ZDU bigBed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF410PVV 11044791 ENCODE Processing Pipeline 704d0278efe02a9ce111b6808eb8cdbc https://www.encodeproject.org/files/ENCFF167ZDU/@@download/ENCFF167ZDU.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF187IWI bed narrowPeak conservative idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF410PVV, ENCFF547MET, ENCFF707HGS, ENCFF985TTQ 984356 ENCODE Processing Pipeline 578bddbc63abd93f1ebd2da1a10ebb59 https://www.encodeproject.org/files/ENCFF187IWI/@@download/ENCFF187IWI.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF033EQD bigBed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF985TTQ 11270877 ENCODE Processing Pipeline 920e1d32450c139a9bdf15531d281da9 https://www.encodeproject.org/files/ENCFF033EQD/@@download/ENCFF033EQD.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF746LSE bigBed narrowPeak conservative idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF187IWI 1555726 ENCODE Processing Pipeline 2103019e9635af95c9eaa0993663db5d https://www.encodeproject.org/files/ENCFF746LSE/@@download/ENCFF746LSE.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF116ZIX bed narrowPeak optimal idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF410PVV, ENCFF547MET, ENCFF707HGS, ENCFF985TTQ 1027357 ENCODE Processing Pipeline eda07a85a8016996d2daf94e04674906 https://www.encodeproject.org/files/ENCFF116ZIX/@@download/ENCFF116ZIX.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF223NZE bigBed narrowPeak optimal idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF116ZIX 1608483 ENCODE Processing Pipeline 7f14d0b79daee234ce9b32495752fbc1 https://www.encodeproject.org/files/ENCFF223NZE/@@download/ENCFF223NZE.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001OBU bigBed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKN 185097 Michael Snyder, Stanford 46f9c912101906909202edb97b70c583 https://www.encodeproject.org/files/ENCFF001OBU/@@download/ENCFF001OBU.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBV fastq reads ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 974772192 Michael Snyder, Stanford fb9d26d10984011d243061f2aa1c7977 https://www.encodeproject.org/files/ENCFF001OBV/@@download/ENCFF001OBV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBX fastq reads ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 866365282 Michael Snyder, Stanford 36f864e0da62ca9a96fa0a02848931fe https://www.encodeproject.org/files/ENCFF001OBX/@@download/ENCFF001OBX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBZ bigWig signal ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OCA, ENCFF001OCB 144669040 Michael Snyder, Stanford feb9b95b4e0625ea994292e4445a9d0e https://www.encodeproject.org/files/ENCFF001OBZ/@@download/ENCFF001OBZ.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OCA bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OBX 412125828 Michael Snyder, Stanford e94ecb648c71ac5d551ae61d596d2df0 https://www.encodeproject.org/files/ENCFF001OCA/@@download/ENCFF001OCA.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OCB bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001OBV 446858667 Michael Snyder, Stanford d0649344c53cee8e67763a88b7afc07f https://www.encodeproject.org/files/ENCFF001OCB/@@download/ENCFF001OCB.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YKN bed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OCA, ENCFF001OCB 46032 Michael Snyder, Stanford 20e531295c3506bbaa755e1493aee665 https://www.encodeproject.org/files/ENCFF001YKN/@@download/ENCFF001YKN.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF486ASX bam unfiltered alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBX, ENCFF018NEO 916947694 ENCODE Processing Pipeline d4372950b6590ea5516638864c49691d https://www.encodeproject.org/files/ENCFF486ASX/@@download/ENCFF486ASX.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF716EKL bam unfiltered alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBV, ENCFF018NEO 1027398569 ENCODE Processing Pipeline 5e79d88702a8a7c8b2c11d94faadb8ad https://www.encodeproject.org/files/ENCFF716EKL/@@download/ENCFF716EKL.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF052QVR bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBX, ENCFF018NEO 537013533 ENCODE Processing Pipeline e6cec2c0ec5ad60b9f3d78a19f536662 https://www.encodeproject.org/files/ENCFF052QVR/@@download/ENCFF052QVR.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF494MWJ bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBV, ENCFF018NEO 564649400 ENCODE Processing Pipeline 8a67f3a6b9339f817436e9a9bb1ba11d https://www.encodeproject.org/files/ENCFF494MWJ/@@download/ENCFF494MWJ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF664PBT bigWig signal p-value ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF052QVR, ENCFF171OVT, ENCFF494MWJ 336360849 ENCODE Processing Pipeline 21e4e74866123a5a5de8047242719544 https://www.encodeproject.org/files/ENCFF664PBT/@@download/ENCFF664PBT.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF528KVN bigWig signal p-value ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF494MWJ 323797569 ENCODE Processing Pipeline e317bb568192b036737894b167e2f82d https://www.encodeproject.org/files/ENCFF528KVN/@@download/ENCFF528KVN.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF007XMO bigWig fold change over control ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF494MWJ 250418170 ENCODE Processing Pipeline 8090467d772a5b2e0fb367a34986a306 https://www.encodeproject.org/files/ENCFF007XMO/@@download/ENCFF007XMO.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF233FFG bigWig fold change over control ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF052QVR, ENCFF171OVT 246418067 ENCODE Processing Pipeline 3c6d1471eb1ab2e06933a2bdcfb48347 https://www.encodeproject.org/files/ENCFF233FFG/@@download/ENCFF233FFG.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF689AFL bigWig fold change over control ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF052QVR, ENCFF171OVT, ENCFF494MWJ 428844029 ENCODE Processing Pipeline b4b0500e74fe31492e0e021d3cf0a9da https://www.encodeproject.org/files/ENCFF689AFL/@@download/ENCFF689AFL.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF940LSC bigBed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF671KJV 12735100 ENCODE Processing Pipeline 70b0397ce7a4ae266bbb1a042731c346 https://www.encodeproject.org/files/ENCFF940LSC/@@download/ENCFF940LSC.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF671FLC bed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF052QVR, ENCFF171OVT, ENCFF494MWJ 6203506 ENCODE Processing Pipeline d918e1cef4a96bf5b5e50a01d41d56c0 https://www.encodeproject.org/files/ENCFF671FLC/@@download/ENCFF671FLC.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF279MMU bigWig signal p-value ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF052QVR, ENCFF171OVT 366335654 ENCODE Processing Pipeline 1c9d386dc7b5a9b361f189153424e0a6 https://www.encodeproject.org/files/ENCFF279MMU/@@download/ENCFF279MMU.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF671KJV bed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF494MWJ 5315252 ENCODE Processing Pipeline 89812e9d1b18f7c26bae1a0b98747228 https://www.encodeproject.org/files/ENCFF671KJV/@@download/ENCFF671KJV.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF601QJA bed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF052QVR, ENCFF171OVT 5577431 ENCODE Processing Pipeline 5c5eb696f4a3303aa0d300c07f9c4299 https://www.encodeproject.org/files/ENCFF601QJA/@@download/ENCFF601QJA.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF230ZKX bed narrowPeak conservative idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF601QJA, ENCFF671FLC, ENCFF671KJV 301149 ENCODE Processing Pipeline 44256dcbfc703efe28d037b6e3a80b61 https://www.encodeproject.org/files/ENCFF230ZKX/@@download/ENCFF230ZKX.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF839UAT bed narrowPeak optimal idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF601QJA, ENCFF671FLC, ENCFF671KJV 304759 ENCODE Processing Pipeline ff28ac624c17e2e88ceb4906fea87265 https://www.encodeproject.org/files/ENCFF839UAT/@@download/ENCFF839UAT.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF290ZQS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF839UAT 693261 ENCODE Processing Pipeline e14b91d9613525deeaba2f3c4a2f106b https://www.encodeproject.org/files/ENCFF290ZQS/@@download/ENCFF290ZQS.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF967XCZ bigBed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF671FLC 12855889 ENCODE Processing Pipeline 18d37d231b88ff69222f718092c956d3 https://www.encodeproject.org/files/ENCFF967XCZ/@@download/ENCFF967XCZ.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF178ACE bigBed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF601QJA 12665219 ENCODE Processing Pipeline 7ff6b05ee795a9a6030aeec16f61f2ac https://www.encodeproject.org/files/ENCFF178ACE/@@download/ENCFF178ACE.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF362AER bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF230ZKX 687400 ENCODE Processing Pipeline 4f7790dd363a3057cb84576cd8be08a0 https://www.encodeproject.org/files/ENCFF362AER/@@download/ENCFF362AER.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NJJ bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NJO 426920663 Michael Snyder, Stanford a182b6417cbd2971926cd62740c5e603 https://www.encodeproject.org/files/ENCFF001NJJ/@@download/ENCFF001NJJ.bam mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NJK bigBed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIH 293976 Michael Snyder, Stanford ec97afb6999e4c97be7a782cab18c63e https://www.encodeproject.org/files/ENCFF001NJK/@@download/ENCFF001NJK.bigBed mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NJL bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NJM 572918606 Michael Snyder, Stanford a64393d54bcd0a2a9c1a694687e759f4 https://www.encodeproject.org/files/ENCFF001NJL/@@download/ENCFF001NJL.bam mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NJM fastq reads ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 1130929730 Michael Snyder, Stanford c7d2b85ab4668b64adb68ff65bdfe104 https://www.encodeproject.org/files/ENCFF001NJM/@@download/ENCFF001NJM.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NJO fastq reads ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 935811781 Michael Snyder, Stanford 21ecfac1fa32f33b4fe504eb48841969 https://www.encodeproject.org/files/ENCFF001NJO/@@download/ENCFF001NJO.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001NJQ bigWig signal ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NJJ, ENCFF001NJL 222287033 Michael Snyder, Stanford b30b74f017740bfab255aa9720489f35 https://www.encodeproject.org/files/ENCFF001NJQ/@@download/ENCFF001NJQ.bigWig mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001YIH bed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NJJ, ENCFF001NJL 92399 Michael Snyder, Stanford 25fcf9f468f89ce80bb2b9cf64e94902 https://www.encodeproject.org/files/ENCFF001YIH/@@download/ENCFF001YIH.bed.gz mm9 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF560UGO bam unfiltered alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NJO, ENCFF018NEO 999173510 ENCODE Processing Pipeline 316b36503f2855bb5c8ba65e9ce73fc5 https://www.encodeproject.org/files/ENCFF560UGO/@@download/ENCFF560UGO.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF914XPZ bam unfiltered alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NJM, ENCFF018NEO 1241518113 ENCODE Processing Pipeline 6f9e55c96cb16a0b91b472573858f81d https://www.encodeproject.org/files/ENCFF914XPZ/@@download/ENCFF914XPZ.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF427KEM bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NJO, ENCFF018NEO 587971203 ENCODE Processing Pipeline b101ed07ed6be0471a88178ed0ce7d49 https://www.encodeproject.org/files/ENCFF427KEM/@@download/ENCFF427KEM.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF325VBN bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NJM, ENCFF018NEO 785943349 ENCODE Processing Pipeline 904931ab9c2578e9b518f611c52a086c https://www.encodeproject.org/files/ENCFF325VBN/@@download/ENCFF325VBN.bam mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF935SQE bigWig signal p-value ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF325VBN, ENCFF339ZWC 244628388 ENCODE Processing Pipeline ad9fd8824303b02218f540267e4d8a87 https://www.encodeproject.org/files/ENCFF935SQE/@@download/ENCFF935SQE.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF193MPU bigWig signal p-value ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF427KEM 234849950 ENCODE Processing Pipeline b5d2c64a709d6357996c767e09878e46 https://www.encodeproject.org/files/ENCFF193MPU/@@download/ENCFF193MPU.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF255QKF bigWig fold change over control ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF325VBN, ENCFF339ZWC 311388025 ENCODE Processing Pipeline c2fe7a22588545e4e6306ff92615eedb https://www.encodeproject.org/files/ENCFF255QKF/@@download/ENCFF255QKF.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF090BJH bigWig signal p-value ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325VBN, ENCFF339ZWC, ENCFF427KEM 217045747 ENCODE Processing Pipeline 22859f7716d3201beac0b8ad96b6f0df https://www.encodeproject.org/files/ENCFF090BJH/@@download/ENCFF090BJH.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF023XHT bigWig fold change over control ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF427KEM 242538179 ENCODE Processing Pipeline e651cc3db48ea0a5b0605706c1f6d70c https://www.encodeproject.org/files/ENCFF023XHT/@@download/ENCFF023XHT.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF781YMH bed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF427KEM 417278 ENCODE Processing Pipeline bd12206913d57708f0a924bf48d9c880 https://www.encodeproject.org/files/ENCFF781YMH/@@download/ENCFF781YMH.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF384FWP bed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF325VBN, ENCFF339ZWC 43570 ENCODE Processing Pipeline c191765b55dbff9034d5300f45420027 https://www.encodeproject.org/files/ENCFF384FWP/@@download/ENCFF384FWP.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF984MWK bed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325VBN, ENCFF339ZWC, ENCFF427KEM 5035860 ENCODE Processing Pipeline b11e320ca4ecf2e45101201fac69f1a0 https://www.encodeproject.org/files/ENCFF984MWK/@@download/ENCFF984MWK.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF247FXG bigBed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF384FWP 158037 ENCODE Processing Pipeline d0a59f5fc1592625ff6c6adaf308a6fa https://www.encodeproject.org/files/ENCFF247FXG/@@download/ENCFF247FXG.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF985RMX bigWig fold change over control ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325VBN, ENCFF339ZWC, ENCFF427KEM 487365407 ENCODE Processing Pipeline caf0fdedc92ac52163d1fd7528aab470 https://www.encodeproject.org/files/ENCFF985RMX/@@download/ENCFF985RMX.bigWig mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF308KKH bigBed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF984MWK 10737348 ENCODE Processing Pipeline e4424cd8765526462b7851a23ed20174 https://www.encodeproject.org/files/ENCFF308KKH/@@download/ENCFF308KKH.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF628MEQ bigBed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF781YMH 915801 ENCODE Processing Pipeline 28defc428e572cec139c9873dc3c1ded https://www.encodeproject.org/files/ENCFF628MEQ/@@download/ENCFF628MEQ.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF601YVA bed narrowPeak conservative idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF384FWP, ENCFF547MET, ENCFF781YMH, ENCFF984MWK 6873 ENCODE Processing Pipeline 81cb43dd6e877a3fc71b9d4b5b3ce073 https://www.encodeproject.org/files/ENCFF601YVA/@@download/ENCFF601YVA.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF093MTA bed narrowPeak optimal idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF384FWP, ENCFF547MET, ENCFF781YMH, ENCFF984MWK 41438 ENCODE Processing Pipeline a2c63956a67640d8a72b455b55ea7f4c https://www.encodeproject.org/files/ENCFF093MTA/@@download/ENCFF093MTA.bed.gz mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF317WRC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF601YVA 55161 ENCODE Processing Pipeline 18ff61ac7586218ea3165ce7b4c41126 https://www.encodeproject.org/files/ENCFF317WRC/@@download/ENCFF317WRC.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF617TOO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF093MTA 120946 ENCODE Processing Pipeline 92e04ad129a450d04a34c6bcc31b422e https://www.encodeproject.org/files/ENCFF617TOO/@@download/ENCFF617TOO.bigBed mm10 released low read length, low read depth, inconsistent platforms insufficient replicate concordance ENCFF001OAF bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001OBC 240801382 Michael Snyder, Stanford d1250be8dbbbabb00a9fc98270ea13f5 https://www.encodeproject.org/files/ENCFF001OAF/@@download/ENCFF001OAF.bam mm9 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OAH bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001OBJ 473876402 Michael Snyder, Stanford 7eaa91ab29638b13f137497d16b7de7f https://www.encodeproject.org/files/ENCFF001OAH/@@download/ENCFF001OAH.bam mm9 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OAI bigBed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YKI 132367 Michael Snyder, Stanford 474a443e52a17367ca4bd151540985fd https://www.encodeproject.org/files/ENCFF001OAI/@@download/ENCFF001OAI.bigBed mm9 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OAJ bigWig signal ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001OAF, ENCFF001OAH 292469937 Michael Snyder, Stanford 37a2a0128ae81110d3aa2f76bdee9ff4 https://www.encodeproject.org/files/ENCFF001OAJ/@@download/ENCFF001OAJ.bigWig mm9 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OBC fastq reads ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 480656167 Michael Snyder, Stanford 9f16d28a89e0146d0fe8c5fe4072e236 https://www.encodeproject.org/files/ENCFF001OBC/@@download/ENCFF001OBC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OBJ fastq reads ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 1233533866 Michael Snyder, Stanford e5e71ccd663350b9f202c8743bb0c0d9 https://www.encodeproject.org/files/ENCFF001OBJ/@@download/ENCFF001OBJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001YKI bed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001OAF, ENCFF001OAH 33589 Michael Snyder, Stanford 8f3c6f657450b75bd8fc4f9644724290 https://www.encodeproject.org/files/ENCFF001YKI/@@download/ENCFF001YKI.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF382KAF bam unfiltered alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001OBJ, ENCFF018NEO 1474380540 ENCODE Processing Pipeline f75f3c33a993bd634280e43100d10897 https://www.encodeproject.org/files/ENCFF382KAF/@@download/ENCFF382KAF.bam mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF566YDC bam unfiltered alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001OBC, ENCFF018NEO 610057335 ENCODE Processing Pipeline 42cef26c54eebfbfaae84a3d6246e9b4 https://www.encodeproject.org/files/ENCFF566YDC/@@download/ENCFF566YDC.bam mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF139PUK bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001OBJ, ENCFF018NEO 914833363 ENCODE Processing Pipeline ff8e5444cd996cb93d449abe19ff9c40 https://www.encodeproject.org/files/ENCFF139PUK/@@download/ENCFF139PUK.bam mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF824KNT bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001OBC, ENCFF018NEO 367747463 ENCODE Processing Pipeline de52d18700cf4f5ab0232f54128a7151 https://www.encodeproject.org/files/ENCFF824KNT/@@download/ENCFF824KNT.bam mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF863PIW bigWig signal p-value ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF017EBX, ENCFF824KNT 280091884 ENCODE Processing Pipeline 0d2a3287fa1afd95cd6cc6add2bf695f https://www.encodeproject.org/files/ENCFF863PIW/@@download/ENCFF863PIW.bigWig mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF215HZN bigWig signal p-value ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF017EBX, ENCFF139PUK 375123026 ENCODE Processing Pipeline 32ef77ad38a2b1396450ffc91464fa62 https://www.encodeproject.org/files/ENCFF215HZN/@@download/ENCFF215HZN.bigWig mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF477DYZ bigWig signal p-value ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF017EBX, ENCFF139PUK, ENCFF824KNT 410985619 ENCODE Processing Pipeline 9f07c9a45de050f6f31296a98fce0eef https://www.encodeproject.org/files/ENCFF477DYZ/@@download/ENCFF477DYZ.bigWig mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF776AOZ bigWig fold change over control ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF017EBX, ENCFF824KNT 198443660 ENCODE Processing Pipeline 90eb890c8663c5a44cc913b6069c8091 https://www.encodeproject.org/files/ENCFF776AOZ/@@download/ENCFF776AOZ.bigWig mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF855ASF bigWig fold change over control ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF017EBX, ENCFF139PUK 376497841 ENCODE Processing Pipeline 2114404bf7c38c3ab02961feb5948e27 https://www.encodeproject.org/files/ENCFF855ASF/@@download/ENCFF855ASF.bigWig mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF465SVV bigWig fold change over control ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF017EBX, ENCFF139PUK, ENCFF824KNT 486673185 ENCODE Processing Pipeline c68f86eb6ecadac8a5359d902299e8e6 https://www.encodeproject.org/files/ENCFF465SVV/@@download/ENCFF465SVV.bigWig mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF424HUK bed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF017EBX, ENCFF824KNT 3489907 ENCODE Processing Pipeline 987de941272196c8a1894b284368c852 https://www.encodeproject.org/files/ENCFF424HUK/@@download/ENCFF424HUK.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF087TTA bed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF017EBX, ENCFF139PUK 4668570 ENCODE Processing Pipeline 4096ba1fc1eced2865aa1e806e16b736 https://www.encodeproject.org/files/ENCFF087TTA/@@download/ENCFF087TTA.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF033VUP bed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF017EBX, ENCFF139PUK, ENCFF824KNT 4824332 ENCODE Processing Pipeline a2d7a9563334ff730540a3f017d213f4 https://www.encodeproject.org/files/ENCFF033VUP/@@download/ENCFF033VUP.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF174GIV bigBed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF424HUK 8886209 ENCODE Processing Pipeline 7475abc344bef6aeb174eef74615cb72 https://www.encodeproject.org/files/ENCFF174GIV/@@download/ENCFF174GIV.bigBed mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF344SDJ bigBed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF087TTA 10886448 ENCODE Processing Pipeline c0f58c0aa0bb68318c9693be598adb5a https://www.encodeproject.org/files/ENCFF344SDJ/@@download/ENCFF344SDJ.bigBed mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF064JVA bigBed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF033VUP 10932046 ENCODE Processing Pipeline e40db0c0960405fca3c0a58ba45a3242 https://www.encodeproject.org/files/ENCFF064JVA/@@download/ENCFF064JVA.bigBed mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF990IYE bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF517BYF 92501 ENCODE Processing Pipeline 78744ee01268c55027f366f098b57a58 https://www.encodeproject.org/files/ENCFF990IYE/@@download/ENCFF990IYE.bigBed mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF517BYF bed narrowPeak conservative idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF033VUP, ENCFF087TTA, ENCFF424HUK, ENCFF547MET 22469 ENCODE Processing Pipeline eacffb11b4a75fa905d861969d42b2d7 https://www.encodeproject.org/files/ENCFF517BYF/@@download/ENCFF517BYF.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF679FKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF968IBZ 98238 ENCODE Processing Pipeline c2e197a5ec682e05a017c4370bad4972 https://www.encodeproject.org/files/ENCFF679FKB/@@download/ENCFF679FKB.bigBed mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF968IBZ bed narrowPeak optimal idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF033VUP, ENCFF087TTA, ENCFF424HUK, ENCFF547MET 25948 ENCODE Processing Pipeline 6742802fe64e87a234954ab8df683d42 https://www.encodeproject.org/files/ENCFF968IBZ/@@download/ENCFF968IBZ.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001NZI bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NZN 428465013 Michael Snyder, Stanford 7e90855e98114645c240ed6b64b8fe75 https://www.encodeproject.org/files/ENCFF001NZI/@@download/ENCFF001NZI.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NZJ bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NZL 494628956 Michael Snyder, Stanford 185f587bdaf041a3e6d665ff507ab911 https://www.encodeproject.org/files/ENCFF001NZJ/@@download/ENCFF001NZJ.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NZK bigBed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKF 1990547 Michael Snyder, Stanford a4a4a69f2bb18d632400da5cc3a48689 https://www.encodeproject.org/files/ENCFF001NZK/@@download/ENCFF001NZK.bigBed mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NZL fastq reads ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 999039005 Michael Snyder, Stanford 4f3ce4fc460b29955f5b37f70dd80994 https://www.encodeproject.org/files/ENCFF001NZL/@@download/ENCFF001NZL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001NZN fastq reads ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 839937253 Michael Snyder, Stanford 647f1b755b68e8cddcf5ef60b7d9fffa https://www.encodeproject.org/files/ENCFF001NZN/@@download/ENCFF001NZN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001NZP bigWig signal ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZI, ENCFF001NZJ 345588870 Michael Snyder, Stanford 17d95b9f3be676392133adb0d5d0ae5d https://www.encodeproject.org/files/ENCFF001NZP/@@download/ENCFF001NZP.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001YKF bed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZI, ENCFF001NZJ 763472 Michael Snyder, Stanford 64646ec6119c9a4f3c4da1f6a988d381 https://www.encodeproject.org/files/ENCFF001YKF/@@download/ENCFF001YKF.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF224SYY bam unfiltered alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NZN, ENCFF018NEO 908460548 ENCODE Processing Pipeline e0d89e99d6b88f6d1e79b0c5faa8bfff https://www.encodeproject.org/files/ENCFF224SYY/@@download/ENCFF224SYY.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF361BTU bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NZL, ENCFF018NEO 741984974 ENCODE Processing Pipeline a301f91dd208f3c7905a483578c19123 https://www.encodeproject.org/files/ENCFF361BTU/@@download/ENCFF361BTU.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF826WXA bam unfiltered alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NZL, ENCFF018NEO 1099949203 ENCODE Processing Pipeline 01ddcd27e6a13ecb1c925165b6258e6f https://www.encodeproject.org/files/ENCFF826WXA/@@download/ENCFF826WXA.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF844BWV bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NZN, ENCFF018NEO 617496155 ENCODE Processing Pipeline 6807b721b98c9ed72d8c4779838bf40f https://www.encodeproject.org/files/ENCFF844BWV/@@download/ENCFF844BWV.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF113FFK bigWig signal p-value ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF844BWV 323070667 ENCODE Processing Pipeline 0852ca925b81ebbd88a9cbd95e282095 https://www.encodeproject.org/files/ENCFF113FFK/@@download/ENCFF113FFK.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF903IQU bigWig signal p-value ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF361BTU 338982505 ENCODE Processing Pipeline 113032d7222fdc90eb41c91b02294c3d https://www.encodeproject.org/files/ENCFF903IQU/@@download/ENCFF903IQU.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF398PAN bigWig signal p-value ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF361BTU, ENCFF844BWV 329037585 ENCODE Processing Pipeline 15d1489d1a25d03872d1736bb9507fff https://www.encodeproject.org/files/ENCFF398PAN/@@download/ENCFF398PAN.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF826KPV bigWig fold change over control ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF361BTU 335726904 ENCODE Processing Pipeline 7b9839c3fbb48b50457abd264cf038f5 https://www.encodeproject.org/files/ENCFF826KPV/@@download/ENCFF826KPV.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF034BBD bigWig fold change over control ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF361BTU, ENCFF844BWV 516652739 ENCODE Processing Pipeline db12451b4cb076d22dc6664252331ca2 https://www.encodeproject.org/files/ENCFF034BBD/@@download/ENCFF034BBD.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF029XTX bed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF361BTU 4718539 ENCODE Processing Pipeline 14130ff65caa67e6568e4654434e6da4 https://www.encodeproject.org/files/ENCFF029XTX/@@download/ENCFF029XTX.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF791OAC bigWig fold change over control ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF844BWV 291038397 ENCODE Processing Pipeline fdbee547a4414545cc2662e9f26a2570 https://www.encodeproject.org/files/ENCFF791OAC/@@download/ENCFF791OAC.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF706CPY bigBed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF029XTX 10523498 ENCODE Processing Pipeline 5cc1a0a5c842a0ea85bc3c4dfa3c333d https://www.encodeproject.org/files/ENCFF706CPY/@@download/ENCFF706CPY.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF325YXC bed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF844BWV 4973225 ENCODE Processing Pipeline a84c69f5ef862626d080bfd265b9ae5a https://www.encodeproject.org/files/ENCFF325YXC/@@download/ENCFF325YXC.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF952MLM bed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF361BTU, ENCFF844BWV 5654294 ENCODE Processing Pipeline b8a5868e1dd19b09d442f78a248840b3 https://www.encodeproject.org/files/ENCFF952MLM/@@download/ENCFF952MLM.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF701HMK bed narrowPeak conservative idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF029XTX, ENCFF325YXC, ENCFF547MET, ENCFF952MLM 654126 ENCODE Processing Pipeline de26a7e65bfc966b87e1fb12547c5671 https://www.encodeproject.org/files/ENCFF701HMK/@@download/ENCFF701HMK.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF772AET bigBed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF952MLM 11126307 ENCODE Processing Pipeline d9bf98acc254c05b70109e47fc2ee69e https://www.encodeproject.org/files/ENCFF772AET/@@download/ENCFF772AET.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF119CZQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF029XTX, ENCFF325YXC, ENCFF547MET, ENCFF952MLM 676618 ENCODE Processing Pipeline 58a5d8389217a038e385c251d6a59ae9 https://www.encodeproject.org/files/ENCFF119CZQ/@@download/ENCFF119CZQ.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF651ESP bigBed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF325YXC 10611486 ENCODE Processing Pipeline 7d113f9e98991f27c4802c2ae6424cf2 https://www.encodeproject.org/files/ENCFF651ESP/@@download/ENCFF651ESP.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF714GUX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF701HMK 1130993 ENCODE Processing Pipeline 438cfc8831651540f670db4e70072d22 https://www.encodeproject.org/files/ENCFF714GUX/@@download/ENCFF714GUX.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF101PTF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF119CZQ 1159779 ENCODE Processing Pipeline a3509c03f2d444b72dc1f415a8f8436f https://www.encodeproject.org/files/ENCFF101PTF/@@download/ENCFF101PTF.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001NZQ bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001OAK 304978724 Michael Snyder, Stanford 305d4dab9ed9fdc98f805ab3dacc3780 https://www.encodeproject.org/files/ENCFF001NZQ/@@download/ENCFF001NZQ.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NZR bigBed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKH 1244432 Michael Snyder, Stanford 22971f235f76d1d77c202280bf88574b https://www.encodeproject.org/files/ENCFF001NZR/@@download/ENCFF001NZR.bigBed mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NZT bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001OAL 323742481 Michael Snyder, Stanford 1db31aabefb63522aad5511f917057b3 https://www.encodeproject.org/files/ENCFF001NZT/@@download/ENCFF001NZT.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NZV bigWig signal ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZQ, ENCFF001NZT 257719985 Michael Snyder, Stanford 9b3d6df822a9baa8489e45045097e226 https://www.encodeproject.org/files/ENCFF001NZV/@@download/ENCFF001NZV.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001OAK fastq reads ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1040353345 Michael Snyder, Stanford 3b0b2057afc1e08fc7d17d125da5309c https://www.encodeproject.org/files/ENCFF001OAK/@@download/ENCFF001OAK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, low read depth biological replicates with identical biosample ENCFF001OAL fastq reads ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 996866848 Michael Snyder, Stanford 5d029df4421309bd7f1a7d7fcf4f0205 https://www.encodeproject.org/files/ENCFF001OAL/@@download/ENCFF001OAL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, low read depth biological replicates with identical biosample ENCFF001YKH bed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZQ, ENCFF001NZT 543358 Michael Snyder, Stanford f8001675e162b21ce1f3ce73d19536d5 https://www.encodeproject.org/files/ENCFF001YKH/@@download/ENCFF001YKH.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF826DYG bam unfiltered alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001OAK, ENCFF018NEO 1164498957 ENCODE Processing Pipeline 4569a5b9a49efecb13cbd6aa399f35c3 https://www.encodeproject.org/files/ENCFF826DYG/@@download/ENCFF826DYG.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF185EQI bam unfiltered alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001OAL, ENCFF018NEO 1120410416 ENCODE Processing Pipeline 6b89a1d9282b9e4283569b651272990f https://www.encodeproject.org/files/ENCFF185EQI/@@download/ENCFF185EQI.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF786IOU bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001OAL, ENCFF018NEO 624554444 ENCODE Processing Pipeline 174917d639368c4625ef5d459ba81277 https://www.encodeproject.org/files/ENCFF786IOU/@@download/ENCFF786IOU.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF170PTO bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001OAK, ENCFF018NEO 610372530 ENCODE Processing Pipeline ed21ab15d964b02e675ebde2c1caf9b0 https://www.encodeproject.org/files/ENCFF170PTO/@@download/ENCFF170PTO.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF287NCT bigWig signal p-value ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF170PTO 268053567 ENCODE Processing Pipeline 55cf934ef7f409e1fad100181761cdd6 https://www.encodeproject.org/files/ENCFF287NCT/@@download/ENCFF287NCT.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF320TNR bigWig signal p-value ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF786IOU 343910137 ENCODE Processing Pipeline 224e49cd9d447a7a838e4dc1356b11d8 https://www.encodeproject.org/files/ENCFF320TNR/@@download/ENCFF320TNR.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF323QCH bigWig signal p-value ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF170PTO, ENCFF786IOU 408756607 ENCODE Processing Pipeline e454db15e2d236fa1f053f975d6baab3 https://www.encodeproject.org/files/ENCFF323QCH/@@download/ENCFF323QCH.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF993PYW bigWig fold change over control ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF170PTO 257591988 ENCODE Processing Pipeline 7928c80d55759864b9906d18c2b22a83 https://www.encodeproject.org/files/ENCFF993PYW/@@download/ENCFF993PYW.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF026AMD bigWig fold change over control ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF170PTO, ENCFF786IOU 435419263 ENCODE Processing Pipeline ceb5cb1300fcdfcf68189db7ac13e8aa https://www.encodeproject.org/files/ENCFF026AMD/@@download/ENCFF026AMD.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF075LJM bigWig fold change over control ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF786IOU 263319859 ENCODE Processing Pipeline 0c51942a1e18f74a2458928931d2ed94 https://www.encodeproject.org/files/ENCFF075LJM/@@download/ENCFF075LJM.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF884FLM bed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF170PTO 5334088 ENCODE Processing Pipeline ba48a71ef46d02e7856a129046ae81fd https://www.encodeproject.org/files/ENCFF884FLM/@@download/ENCFF884FLM.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF258ZVQ bed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF786IOU 5353988 ENCODE Processing Pipeline 73b245284cb6803eb4c3e2ff1349e79c https://www.encodeproject.org/files/ENCFF258ZVQ/@@download/ENCFF258ZVQ.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF862BHO bed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF170PTO, ENCFF786IOU 5931217 ENCODE Processing Pipeline 44997d69e3f6acbadee44ac9e6badfa7 https://www.encodeproject.org/files/ENCFF862BHO/@@download/ENCFF862BHO.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF877TIO bigBed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF884FLM 12735918 ENCODE Processing Pipeline 64988d838fce886c6890beb544871025 https://www.encodeproject.org/files/ENCFF877TIO/@@download/ENCFF877TIO.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF783MLF bigBed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF258ZVQ 12692729 ENCODE Processing Pipeline 7980d5f1b2570c3e567303a33c0c40c4 https://www.encodeproject.org/files/ENCFF783MLF/@@download/ENCFF783MLF.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF870BCB bigBed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF862BHO 12915685 ENCODE Processing Pipeline 01801bba895e02566b61869ff27b9a41 https://www.encodeproject.org/files/ENCFF870BCB/@@download/ENCFF870BCB.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF050TEJ bed narrowPeak conservative idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF258ZVQ, ENCFF547MET, ENCFF862BHO, ENCFF884FLM 533988 ENCODE Processing Pipeline ea05e8d8654c293e296094492da70d34 https://www.encodeproject.org/files/ENCFF050TEJ/@@download/ENCFF050TEJ.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF817PDS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF050TEJ 1193667 ENCODE Processing Pipeline dfb107c2bc0e98c34ad05f7750c0acdf https://www.encodeproject.org/files/ENCFF817PDS/@@download/ENCFF817PDS.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF700PEG bed narrowPeak optimal idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF258ZVQ, ENCFF547MET, ENCFF862BHO, ENCFF884FLM 539838 ENCODE Processing Pipeline 9ce5e95026614e56564b749973555582 https://www.encodeproject.org/files/ENCFF700PEG/@@download/ENCFF700PEG.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF853JJG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF700PEG 1201894 ENCODE Processing Pipeline 51f2652ba0cae7ef04ce122eb149adce https://www.encodeproject.org/files/ENCFF853JJG/@@download/ENCFF853JJG.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001NRJ bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NSL 275939567 Michael Snyder, Stanford afc707cb16c55ddff7496e0d675584df https://www.encodeproject.org/files/ENCFF001NRJ/@@download/ENCFF001NRJ.bam mm9 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001NRL bigBed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJJ 94928 Michael Snyder, Stanford 848b3a16dc76233a9c5b998a18a7de97 https://www.encodeproject.org/files/ENCFF001NRL/@@download/ENCFF001NRL.bigBed mm9 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001NRM bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NSK 337650880 Michael Snyder, Stanford df61bff0cefc1c86a170b3eda061559c https://www.encodeproject.org/files/ENCFF001NRM/@@download/ENCFF001NRM.bam mm9 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001NRP bigWig signal ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRJ, ENCFF001NRM 260332922 Michael Snyder, Stanford e23c799dbf35e94422137646cd36f33e https://www.encodeproject.org/files/ENCFF001NRP/@@download/ENCFF001NRP.bigWig mm9 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001NSK fastq reads ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 891997675 Michael Snyder, Stanford 2fc8094f9680de41167f9f944bcbe339 https://www.encodeproject.org/files/ENCFF001NSK/@@download/ENCFF001NSK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001NSL fastq reads ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1031236911 Michael Snyder, Stanford 6c76ac286ce5eea82d5888148e48e571 https://www.encodeproject.org/files/ENCFF001NSL/@@download/ENCFF001NSL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001YJJ bed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRJ, ENCFF001NRM 14187 Michael Snyder, Stanford b1268bdb9b9d907a5ef5f0ca0d2d2dbf https://www.encodeproject.org/files/ENCFF001YJJ/@@download/ENCFF001YJJ.bed.gz mm9 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF244EWN bam unfiltered alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NSL, ENCFF018NEO 1166633828 ENCODE Processing Pipeline 6d263cd2efcaba82c10fd6d84616b65a https://www.encodeproject.org/files/ENCFF244EWN/@@download/ENCFF244EWN.bam mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF335SKO bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NSL, ENCFF018NEO 593402730 ENCODE Processing Pipeline f61383b89828a5518beaf715fe7f16da https://www.encodeproject.org/files/ENCFF335SKO/@@download/ENCFF335SKO.bam mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF529WRC bam unfiltered alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NSK, ENCFF018NEO 1051239211 ENCODE Processing Pipeline ee12e95e941af84607828de5652106fd https://www.encodeproject.org/files/ENCFF529WRC/@@download/ENCFF529WRC.bam mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF899YSW bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NSK, ENCFF018NEO 643421780 ENCODE Processing Pipeline b8f3f25faa17d0c9e9b5879f43377202 https://www.encodeproject.org/files/ENCFF899YSW/@@download/ENCFF899YSW.bam mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF956HAY bigWig fold change over control ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF899YSW 248907201 ENCODE Processing Pipeline 23e14e51ef3f082144e153f9191318b1 https://www.encodeproject.org/files/ENCFF956HAY/@@download/ENCFF956HAY.bigWig mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF624HQU bed narrowPeak optimal idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065JNG, ENCFF289QRZ, ENCFF334JLD, ENCFF547MET 92029 ENCODE Processing Pipeline 83a772de8b10e4c2dd0f4a93aecf6805 https://www.encodeproject.org/files/ENCFF624HQU/@@download/ENCFF624HQU.bed.gz mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF345SPY bigWig signal p-value ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF335SKO 246347686 ENCODE Processing Pipeline f05306517c5ce03e21143e4aa49f4032 https://www.encodeproject.org/files/ENCFF345SPY/@@download/ENCFF345SPY.bigWig mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF240ORP bigWig fold change over control ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF335SKO, ENCFF899YSW 408444486 ENCODE Processing Pipeline c0618b4d697a41ab4edaeea9fdaddfd3 https://www.encodeproject.org/files/ENCFF240ORP/@@download/ENCFF240ORP.bigWig mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF226SDU bigBed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF289QRZ 12702039 ENCODE Processing Pipeline ce52b7798a4b556db05c561d80ac6090 https://www.encodeproject.org/files/ENCFF226SDU/@@download/ENCFF226SDU.bigBed mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF894HXN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF227IUE 159810 ENCODE Processing Pipeline f9fac35e2359e77aae07593ee0a1fe9f https://www.encodeproject.org/files/ENCFF894HXN/@@download/ENCFF894HXN.bigBed mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF334JLD bed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF335SKO 4519766 ENCODE Processing Pipeline 07b87174c2516541a993c360d0ff4673 https://www.encodeproject.org/files/ENCFF334JLD/@@download/ENCFF334JLD.bed.gz mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF181DJD bigBed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065JNG 12924983 ENCODE Processing Pipeline d4e898bf666abef30672b009160a40ba https://www.encodeproject.org/files/ENCFF181DJD/@@download/ENCFF181DJD.bigBed mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF068FUP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF624HQU 218137 ENCODE Processing Pipeline adc277200f1442b3043e105dac4f38c3 https://www.encodeproject.org/files/ENCFF068FUP/@@download/ENCFF068FUP.bigBed mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF901TDO bigBed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF334JLD 10374541 ENCODE Processing Pipeline 99fb63b8012057ff945d1e135c0b6318 https://www.encodeproject.org/files/ENCFF901TDO/@@download/ENCFF901TDO.bigBed mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF705AHK bigWig signal p-value ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF899YSW 265076488 ENCODE Processing Pipeline 527f3880b26ebb17e9caf84d4937b39f https://www.encodeproject.org/files/ENCFF705AHK/@@download/ENCFF705AHK.bigWig mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF837UJM bigWig signal p-value ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF335SKO, ENCFF899YSW 302384021 ENCODE Processing Pipeline 10d848993e9e3ba79a52a736be4d6f97 https://www.encodeproject.org/files/ENCFF837UJM/@@download/ENCFF837UJM.bigWig mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF026OHN bigWig fold change over control ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF335SKO 237512277 ENCODE Processing Pipeline 8be96b6dd677aa9babd75325402ad07d https://www.encodeproject.org/files/ENCFF026OHN/@@download/ENCFF026OHN.bigWig mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF227IUE bed narrowPeak conservative idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065JNG, ENCFF289QRZ, ENCFF334JLD, ENCFF547MET 54425 ENCODE Processing Pipeline 349360792ac3174547ea5e6fdc448dd3 https://www.encodeproject.org/files/ENCFF227IUE/@@download/ENCFF227IUE.bed.gz mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF289QRZ bed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF899YSW 4989508 ENCODE Processing Pipeline b270438dc50c03c7c71674aa2ae91c8c https://www.encodeproject.org/files/ENCFF289QRZ/@@download/ENCFF289QRZ.bed.gz mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF065JNG bed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF335SKO, ENCFF899YSW 5337293 ENCODE Processing Pipeline cab11685164069fc96376da15a5cc312 https://www.encodeproject.org/files/ENCFF065JNG/@@download/ENCFF065JNG.bed.gz mm10 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001NKB bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NKM 456274887 Michael Snyder, Stanford 007116fc48bb16a8268a4bf2a5445957 https://www.encodeproject.org/files/ENCFF001NKB/@@download/ENCFF001NKB.bam mm9 released low read length, low read depth ENCFF001NKC bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NKV 481051798 Michael Snyder, Stanford 725cac95edccd80ae6d254d6374ab002 https://www.encodeproject.org/files/ENCFF001NKC/@@download/ENCFF001NKC.bam mm9 released low read length, low read depth ENCFF001NKD bigBed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIK 1715288 Michael Snyder, Stanford d30b8036fcd3c68f2ece6a106933752c https://www.encodeproject.org/files/ENCFF001NKD/@@download/ENCFF001NKD.bigBed mm9 released low read length, low read depth ENCFF001NKG bigWig signal ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKB, ENCFF001NKC 320423853 Michael Snyder, Stanford 2d8cd9459afffb99bb79cb6db4d84bba https://www.encodeproject.org/files/ENCFF001NKG/@@download/ENCFF001NKG.bigWig mm9 released low read length, low read depth ENCFF001NKM fastq reads ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 770143593 Michael Snyder, Stanford f93cdc73a6cb36d4a93e6f791c4411de https://www.encodeproject.org/files/ENCFF001NKM/@@download/ENCFF001NKM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001NKV fastq reads ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 864060184 Michael Snyder, Stanford bb24d0316bfc106a93e2f4e66b2e4483 https://www.encodeproject.org/files/ENCFF001NKV/@@download/ENCFF001NKV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001YIK bed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKB, ENCFF001NKC 806248 Michael Snyder, Stanford 7f327f7124450f76fb67b3530282802a https://www.encodeproject.org/files/ENCFF001YIK/@@download/ENCFF001YIK.bed.gz mm9 released low read length, low read depth ENCFF555ELF bam unfiltered alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKV, ENCFF018NEO 985573230 ENCODE Processing Pipeline dbd26147e0ffe20996220b4ad349ff27 https://www.encodeproject.org/files/ENCFF555ELF/@@download/ENCFF555ELF.bam mm10 released low read length, low read depth ENCFF735JLO bam unfiltered alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKM, ENCFF018NEO 886087277 ENCODE Processing Pipeline e3e43d149510c13891c392f06200d17c https://www.encodeproject.org/files/ENCFF735JLO/@@download/ENCFF735JLO.bam mm10 released low read length, low read depth ENCFF846SWR bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKV, ENCFF018NEO 732445194 ENCODE Processing Pipeline 020c7886ae80dedc0f14303ee1370e76 https://www.encodeproject.org/files/ENCFF846SWR/@@download/ENCFF846SWR.bam mm10 released low read length, low read depth ENCFF838XIQ bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKM, ENCFF018NEO 655983259 ENCODE Processing Pipeline b97459f68295b10d756f29af779e841a https://www.encodeproject.org/files/ENCFF838XIQ/@@download/ENCFF838XIQ.bam mm10 released low read length, low read depth ENCFF127AIL bigWig signal p-value ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF838XIQ 229743094 ENCODE Processing Pipeline d12f77d6e765657edc8099a3453877e3 https://www.encodeproject.org/files/ENCFF127AIL/@@download/ENCFF127AIL.bigWig mm10 released low read length, low read depth ENCFF727KQJ bigWig signal p-value ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF846SWR 235554277 ENCODE Processing Pipeline dd930f5d41359b9794ed4647cda500f7 https://www.encodeproject.org/files/ENCFF727KQJ/@@download/ENCFF727KQJ.bigWig mm10 released low read length, low read depth ENCFF584CJT bigWig fold change over control ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF838XIQ 248609592 ENCODE Processing Pipeline 0cf2619c59aa00e814591435e2efaa3b https://www.encodeproject.org/files/ENCFF584CJT/@@download/ENCFF584CJT.bigWig mm10 released low read length, low read depth ENCFF030XCC bigWig signal p-value ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF838XIQ, ENCFF846SWR 217103879 ENCODE Processing Pipeline 599e4a2e0afa272388d4463e21448df9 https://www.encodeproject.org/files/ENCFF030XCC/@@download/ENCFF030XCC.bigWig mm10 released low read length, low read depth ENCFF055BSE bigWig fold change over control ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF846SWR 261252457 ENCODE Processing Pipeline 1d03a80793b955a3a342a46b859f812f https://www.encodeproject.org/files/ENCFF055BSE/@@download/ENCFF055BSE.bigWig mm10 released low read length, low read depth ENCFF630JDA bigWig fold change over control ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF838XIQ, ENCFF846SWR 446245687 ENCODE Processing Pipeline b9922445233eb0e66c4051c409519176 https://www.encodeproject.org/files/ENCFF630JDA/@@download/ENCFF630JDA.bigWig mm10 released low read length, low read depth ENCFF048NGW bed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF838XIQ 7158275 ENCODE Processing Pipeline 569a47db6e61847ac4a4281ff6c4b6b5 https://www.encodeproject.org/files/ENCFF048NGW/@@download/ENCFF048NGW.bed.gz mm10 released low read length, low read depth ENCFF250LEC bed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF846SWR 7098239 ENCODE Processing Pipeline fa4b75392eb384300093eeb5016877c6 https://www.encodeproject.org/files/ENCFF250LEC/@@download/ENCFF250LEC.bed.gz mm10 released low read length, low read depth ENCFF351DDA bed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF838XIQ, ENCFF846SWR 7285112 ENCODE Processing Pipeline 7e7755a13e09529037355d86a0b18592 https://www.encodeproject.org/files/ENCFF351DDA/@@download/ENCFF351DDA.bed.gz mm10 released low read length, low read depth ENCFF691VAV bigBed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF048NGW 11060373 ENCODE Processing Pipeline 77e5ead6b8a10c7ad3c853f8f11d7130 https://www.encodeproject.org/files/ENCFF691VAV/@@download/ENCFF691VAV.bigBed mm10 released low read length, low read depth ENCFF780JWE bed narrowPeak optimal idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF048NGW, ENCFF250LEC, ENCFF351DDA, ENCFF547MET 277110 ENCODE Processing Pipeline c68043cc17f592eca0ec0a6e3aab0f47 https://www.encodeproject.org/files/ENCFF780JWE/@@download/ENCFF780JWE.bed.gz mm10 released low read length, low read depth ENCFF954GWL bigBed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF250LEC 11294097 ENCODE Processing Pipeline 3d94f2a2f334e021428b7224047af386 https://www.encodeproject.org/files/ENCFF954GWL/@@download/ENCFF954GWL.bigBed mm10 released low read length, low read depth ENCFF710AEW bigBed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF351DDA 11135693 ENCODE Processing Pipeline 78670116924e74b106b3d00bdf5da762 https://www.encodeproject.org/files/ENCFF710AEW/@@download/ENCFF710AEW.bigBed mm10 released low read length, low read depth ENCFF965HUB bed narrowPeak conservative idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF048NGW, ENCFF250LEC, ENCFF351DDA, ENCFF547MET 249531 ENCODE Processing Pipeline 1f736e85e3dc73654a05cf7071c1dda4 https://www.encodeproject.org/files/ENCFF965HUB/@@download/ENCFF965HUB.bed.gz mm10 released low read length, low read depth ENCFF756NPB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF965HUB 633447 ENCODE Processing Pipeline f4536919f555f62a7d91ddc6998ada59 https://www.encodeproject.org/files/ENCFF756NPB/@@download/ENCFF756NPB.bigBed mm10 released low read length, low read depth ENCFF537JCU bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF780JWE 690174 ENCODE Processing Pipeline e33b64c00322031e3ee6af7777db7f9d https://www.encodeproject.org/files/ENCFF537JCU/@@download/ENCFF537JCU.bigBed mm10 released low read length, low read depth ENCFF001NKX bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NLH 424028436 Michael Snyder, Stanford a089c70bf66eae5f55bd3b5aa1aabf32 https://www.encodeproject.org/files/ENCFF001NKX/@@download/ENCFF001NKX.bam mm9 released low read length, low read depth ENCFF001NKY bigBed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIN 2854555 Michael Snyder, Stanford d1d9be178f938cc56b0def135113404a https://www.encodeproject.org/files/ENCFF001NKY/@@download/ENCFF001NKY.bigBed mm9 released low read length, low read depth ENCFF001NKZ bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NLT 513688446 Michael Snyder, Stanford 7cfa24900b88159602ad28e202fa1b9e https://www.encodeproject.org/files/ENCFF001NKZ/@@download/ENCFF001NKZ.bam mm9 released low read length, low read depth ENCFF001NLA bigWig signal ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKX, ENCFF001NKZ 333496156 Michael Snyder, Stanford e0afe968a7b99439771e094d6d1e04e0 https://www.encodeproject.org/files/ENCFF001NLA/@@download/ENCFF001NLA.bigWig mm9 released low read length, low read depth ENCFF001NLH fastq reads ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 732841473 Michael Snyder, Stanford 35ff98b85dda13cad70e9afb22c6b988 https://www.encodeproject.org/files/ENCFF001NLH/@@download/ENCFF001NLH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001NLT fastq reads ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 940503223 Michael Snyder, Stanford e9d358767db7ee3edf11e03c8aedc839 https://www.encodeproject.org/files/ENCFF001NLT/@@download/ENCFF001NLT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001YIN bed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKX, ENCFF001NKZ 1134604 Michael Snyder, Stanford d25c61303862bea9b1b1500ce5e14e40 https://www.encodeproject.org/files/ENCFF001YIN/@@download/ENCFF001YIN.bed.gz mm9 released low read length, low read depth ENCFF608HGU bam unfiltered alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLT, ENCFF018NEO 1078711960 ENCODE Processing Pipeline 05b429b6da142842ba06ef1a7a799afd https://www.encodeproject.org/files/ENCFF608HGU/@@download/ENCFF608HGU.bam mm10 released low read length, low read depth ENCFF421VHZ bam unfiltered alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLH, ENCFF018NEO 862923890 ENCODE Processing Pipeline e697df9be42643a90d8b1b9ed78edb41 https://www.encodeproject.org/files/ENCFF421VHZ/@@download/ENCFF421VHZ.bam mm10 released low read length, low read depth ENCFF241INM bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLT, ENCFF018NEO 741873023 ENCODE Processing Pipeline aa61c1bb71a6d5d3194d84852ad3769e https://www.encodeproject.org/files/ENCFF241INM/@@download/ENCFF241INM.bam mm10 released low read length, low read depth ENCFF022TYB bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLH, ENCFF018NEO 603222105 ENCODE Processing Pipeline 477dadbe291b8975b74702ab9a7cdc90 https://www.encodeproject.org/files/ENCFF022TYB/@@download/ENCFF022TYB.bam mm10 released low read length, low read depth ENCFF055LKX bigWig signal p-value ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF022TYB, ENCFF339ZWC 232872090 ENCODE Processing Pipeline 6c7f00970cdd6412e545367b7005d57a https://www.encodeproject.org/files/ENCFF055LKX/@@download/ENCFF055LKX.bigWig mm10 released low read length, low read depth ENCFF204IJO bigWig signal p-value ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF241INM, ENCFF339ZWC 246597217 ENCODE Processing Pipeline f478fd1ab0138ce7e23ccc2ae9f6f5fe https://www.encodeproject.org/files/ENCFF204IJO/@@download/ENCFF204IJO.bigWig mm10 released low read length, low read depth ENCFF173UZZ bigWig signal p-value ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF022TYB, ENCFF241INM, ENCFF339ZWC 219868405 ENCODE Processing Pipeline 08784d7470de20d0a5739c130568c8e3 https://www.encodeproject.org/files/ENCFF173UZZ/@@download/ENCFF173UZZ.bigWig mm10 released low read length, low read depth ENCFF901PDR bigWig fold change over control ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF022TYB, ENCFF339ZWC 257891464 ENCODE Processing Pipeline 7e5feaebe84041e38da4bc3b2de24825 https://www.encodeproject.org/files/ENCFF901PDR/@@download/ENCFF901PDR.bigWig mm10 released low read length, low read depth ENCFF216JRQ bigWig fold change over control ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF022TYB, ENCFF241INM, ENCFF339ZWC 473961857 ENCODE Processing Pipeline c0965ec6741200e33f3c950f98835beb https://www.encodeproject.org/files/ENCFF216JRQ/@@download/ENCFF216JRQ.bigWig mm10 released low read length, low read depth ENCFF073GQV bigWig fold change over control ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF241INM, ENCFF339ZWC 300531270 ENCODE Processing Pipeline bbae25248ce4124e87dc711ea2b63a22 https://www.encodeproject.org/files/ENCFF073GQV/@@download/ENCFF073GQV.bigWig mm10 released low read length, low read depth ENCFF490BZL bed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF022TYB, ENCFF339ZWC 3166573 ENCODE Processing Pipeline 864d26763f1cd964617469259ce87923 https://www.encodeproject.org/files/ENCFF490BZL/@@download/ENCFF490BZL.bed.gz mm10 released low read length, low read depth ENCFF431GLY bed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF241INM, ENCFF339ZWC 3171026 ENCODE Processing Pipeline 29009260949328d874dd193e8819a069 https://www.encodeproject.org/files/ENCFF431GLY/@@download/ENCFF431GLY.bed.gz mm10 released low read length, low read depth ENCFF275BHY bed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF022TYB, ENCFF241INM, ENCFF339ZWC 5683721 ENCODE Processing Pipeline 3a0f9ef8e351c368d3863e08c80fe16d https://www.encodeproject.org/files/ENCFF275BHY/@@download/ENCFF275BHY.bed.gz mm10 released low read length, low read depth ENCFF026WSE bigBed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF490BZL 6579460 ENCODE Processing Pipeline 3f82569b64e21a91e2f652326a03cd02 https://www.encodeproject.org/files/ENCFF026WSE/@@download/ENCFF026WSE.bigBed mm10 released low read length, low read depth ENCFF407UDM bigBed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF431GLY 6291294 ENCODE Processing Pipeline 491d4b699b1c4e56eb9b62d4764b6857 https://www.encodeproject.org/files/ENCFF407UDM/@@download/ENCFF407UDM.bigBed mm10 released low read length, low read depth ENCFF246PZW bigBed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF275BHY 13167525 ENCODE Processing Pipeline 86474b1d773b8a96e6bea4ba5f1829cc https://www.encodeproject.org/files/ENCFF246PZW/@@download/ENCFF246PZW.bigBed mm10 released low read length, low read depth ENCFF170CLI bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF020AAC 1184858 ENCODE Processing Pipeline 16e81a9c16fab3b13711e4fdb5433593 https://www.encodeproject.org/files/ENCFF170CLI/@@download/ENCFF170CLI.bigBed mm10 released low read length, low read depth ENCFF020AAC bed narrowPeak conservative idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF275BHY, ENCFF431GLY, ENCFF490BZL, ENCFF547MET 716578 ENCODE Processing Pipeline fdbbaba3cc7aa1024ce49de70d5df388 https://www.encodeproject.org/files/ENCFF020AAC/@@download/ENCFF020AAC.bed.gz mm10 released low read length, low read depth ENCFF165NRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF402YZT 1237567 ENCODE Processing Pipeline ef1ad412ced84e73676e5ba46123995f https://www.encodeproject.org/files/ENCFF165NRC/@@download/ENCFF165NRC.bigBed mm10 released low read length, low read depth ENCFF402YZT bed narrowPeak optimal idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF275BHY, ENCFF431GLY, ENCFF490BZL, ENCFF547MET 758228 ENCODE Processing Pipeline 84f51d843d33a64b8f96bb8a130c1067 https://www.encodeproject.org/files/ENCFF402YZT/@@download/ENCFF402YZT.bed.gz mm10 released low read length, low read depth ENCFF381HVY fastq reads ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 792491525 Michael Snyder, Stanford 531595711b5ba4b28bbabcadff505430 https://www.encodeproject.org/files/ENCFF381HVY/@@download/ENCFF381HVY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF889MSI bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF381HVY 685453338 Michael Snyder, Stanford 73ab4a485d3098ede07fb8716cf0136b https://www.encodeproject.org/files/ENCFF889MSI/@@download/ENCFF889MSI.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF986XRF fastq reads ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 861478492 Michael Snyder, Stanford 4bceb508e3ba4375c50b99937d4f3c04 https://www.encodeproject.org/files/ENCFF986XRF/@@download/ENCFF986XRF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF570ABH bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF986XRF 707259040 Michael Snyder, Stanford 2823b1a8daef38fa80d8359bbadb10a3 https://www.encodeproject.org/files/ENCFF570ABH/@@download/ENCFF570ABH.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF439VGN bed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF570ABH, ENCFF889MSI 278145 Michael Snyder, Stanford 33dcf7a9e37f913b47364966c809e803 https://www.encodeproject.org/files/ENCFF439VGN/@@download/ENCFF439VGN.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF752TEK bigBed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF439VGN 615167 ENCODE Consortium b249e1fbc39aad963571c916e687896a https://www.encodeproject.org/files/ENCFF752TEK/@@download/ENCFF752TEK.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF792QEZ bam unfiltered alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF986XRF 1044578393 ENCODE Processing Pipeline 79d3d5fb95a763a5384978216935feb1 https://www.encodeproject.org/files/ENCFF792QEZ/@@download/ENCFF792QEZ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF339TEB bam unfiltered alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF381HVY 932152346 ENCODE Processing Pipeline 8aceb195733a30b5e7febaabe8485c4b https://www.encodeproject.org/files/ENCFF339TEB/@@download/ENCFF339TEB.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF309VFP bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF986XRF 507930741 ENCODE Processing Pipeline 27492d8ee0420582f68d5cbe940908df https://www.encodeproject.org/files/ENCFF309VFP/@@download/ENCFF309VFP.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF990KEU bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF381HVY 420242107 ENCODE Processing Pipeline e4db407620e24fe385b8c3252a6a945a https://www.encodeproject.org/files/ENCFF990KEU/@@download/ENCFF990KEU.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF600MFY bigWig signal p-value ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF990KEU 225828167 ENCODE Processing Pipeline 546cccd1b2730bc3f7d3a8e46d79c74f https://www.encodeproject.org/files/ENCFF600MFY/@@download/ENCFF600MFY.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF968AFM bigWig signal p-value ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF309VFP, ENCFF339ZWC 233988658 ENCODE Processing Pipeline ce94253231e355f665123a972a01acda https://www.encodeproject.org/files/ENCFF968AFM/@@download/ENCFF968AFM.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF468UTU bigWig fold change over control ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF990KEU 188480147 ENCODE Processing Pipeline da5cbd1b6f4eec183a7365ee7082c031 https://www.encodeproject.org/files/ENCFF468UTU/@@download/ENCFF468UTU.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF099IDG bigWig signal p-value ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF309VFP, ENCFF339ZWC, ENCFF990KEU 231282520 ENCODE Processing Pipeline 3576ebf143c77146bab0e8af3aea56cf https://www.encodeproject.org/files/ENCFF099IDG/@@download/ENCFF099IDG.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF680HBR bigWig fold change over control ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF309VFP, ENCFF339ZWC 217845382 ENCODE Processing Pipeline 9858823e5cfc36a55c1caeec62288eca https://www.encodeproject.org/files/ENCFF680HBR/@@download/ENCFF680HBR.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF421UII bigBed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF482CYN 9973882 ENCODE Processing Pipeline 826393725dd538ad0c28d841a45f0a9c https://www.encodeproject.org/files/ENCFF421UII/@@download/ENCFF421UII.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF018QPL bed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF309VFP, ENCFF339ZWC, ENCFF990KEU 5038787 ENCODE Processing Pipeline 611e472f4683da2a3a0696c98df686ed https://www.encodeproject.org/files/ENCFF018QPL/@@download/ENCFF018QPL.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF292QHD bigBed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF434PTP 10013754 ENCODE Processing Pipeline eeaf014f16cda95d085cbddebe34f91b https://www.encodeproject.org/files/ENCFF292QHD/@@download/ENCFF292QHD.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF434PTP bed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF309VFP, ENCFF339ZWC 4414541 ENCODE Processing Pipeline 932cb57fc3684a1731e4c88e89da037c https://www.encodeproject.org/files/ENCFF434PTP/@@download/ENCFF434PTP.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF650BRL bigWig fold change over control ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF309VFP, ENCFF339ZWC, ENCFF990KEU 351541424 ENCODE Processing Pipeline 5f5d8ad3a65a778a2c6257746cf577ad https://www.encodeproject.org/files/ENCFF650BRL/@@download/ENCFF650BRL.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF344XYL bigBed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF018QPL 12769801 ENCODE Processing Pipeline 4aa851edefc517070ce44edf383364fa https://www.encodeproject.org/files/ENCFF344XYL/@@download/ENCFF344XYL.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF323UTM bed narrowPeak conservative idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF018QPL, ENCFF434PTP, ENCFF482CYN, ENCFF547MET 288196 ENCODE Processing Pipeline 733a070a88a1779e2c71e0fc0fb7b3a7 https://www.encodeproject.org/files/ENCFF323UTM/@@download/ENCFF323UTM.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF482CYN bed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF990KEU 4452706 ENCODE Processing Pipeline c23647d97c494641c6515381e3069f04 https://www.encodeproject.org/files/ENCFF482CYN/@@download/ENCFF482CYN.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF613TDJ bed narrowPeak optimal idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF018QPL, ENCFF434PTP, ENCFF482CYN, ENCFF547MET 316860 ENCODE Processing Pipeline 8c33551da2197b0e4c668864addca82b https://www.encodeproject.org/files/ENCFF613TDJ/@@download/ENCFF613TDJ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF454GOV bigBed narrowPeak conservative idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF323UTM 541880 ENCODE Processing Pipeline f3e402cfd3fe2340f3816c63d1824cf1 https://www.encodeproject.org/files/ENCFF454GOV/@@download/ENCFF454GOV.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF682JMK bigBed narrowPeak optimal idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF613TDJ 717116 ENCODE Processing Pipeline 083a2f2108b4d81c7552a8320e190d73 https://www.encodeproject.org/files/ENCFF682JMK/@@download/ENCFF682JMK.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF001NPH bigBed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJB 248540 Michael Snyder, Stanford d095ab6112d5cd91d1c65d545231ccda https://www.encodeproject.org/files/ENCFF001NPH/@@download/ENCFF001NPH.bigBed mm9 released low read length biological replicates with identical biosample ENCFF001NPI bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NPW 476333552 Michael Snyder, Stanford 3f2f927f51b4f2010e667d3ba4dab449 https://www.encodeproject.org/files/ENCFF001NPI/@@download/ENCFF001NPI.bam mm9 released low read length biological replicates with identical biosample ENCFF001NPJ bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NPS 508907437 Michael Snyder, Stanford aec0416b263b554b45c7414970a243af https://www.encodeproject.org/files/ENCFF001NPJ/@@download/ENCFF001NPJ.bam mm9 released low read length biological replicates with identical biosample ENCFF001NPK bigWig signal ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPI, ENCFF001NPJ 366950244 Michael Snyder, Stanford d4f4f3a5d70e43688a155ddb8e9dd9bf https://www.encodeproject.org/files/ENCFF001NPK/@@download/ENCFF001NPK.bigWig mm9 released low read length biological replicates with identical biosample ENCFF001NPS fastq reads ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1034673954 Michael Snyder, Stanford 065bb6d26105b9936ac026c8d18eeb3a https://www.encodeproject.org/files/ENCFF001NPS/@@download/ENCFF001NPS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length biological replicates with identical biosample ENCFF001NPW fastq reads ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1357566493 Michael Snyder, Stanford c0bc929e063529f94521abe9dd9ef229 https://www.encodeproject.org/files/ENCFF001NPW/@@download/ENCFF001NPW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length biological replicates with identical biosample ENCFF001YJB bed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPI, ENCFF001NPJ 84739 Michael Snyder, Stanford 256e4056612e520746d48c9a638dd683 https://www.encodeproject.org/files/ENCFF001YJB/@@download/ENCFF001YJB.bed.gz mm9 released low read length biological replicates with identical biosample ENCFF871RBV bam unfiltered alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NPS, ENCFF018NEO 1241539735 ENCODE Processing Pipeline d3d3c3c673bfbf2350534c50b8448ba9 https://www.encodeproject.org/files/ENCFF871RBV/@@download/ENCFF871RBV.bam mm10 released low read length biological replicates with identical biosample ENCFF127VLJ bam unfiltered alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NPW, ENCFF018NEO 1577588902 ENCODE Processing Pipeline 422e831cdee92f0089f73f5f677fdf1b https://www.encodeproject.org/files/ENCFF127VLJ/@@download/ENCFF127VLJ.bam mm10 released low read length biological replicates with identical biosample ENCFF993AWK bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NPS, ENCFF018NEO 815286351 ENCODE Processing Pipeline 970892e3a06b6d25295289e3ee7c4cf3 https://www.encodeproject.org/files/ENCFF993AWK/@@download/ENCFF993AWK.bam mm10 released low read length biological replicates with identical biosample ENCFF329RLT bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NPW, ENCFF018NEO 942812396 ENCODE Processing Pipeline 2f4ce88ee59d3c9c6549bbacb85980c8 https://www.encodeproject.org/files/ENCFF329RLT/@@download/ENCFF329RLT.bam mm10 released low read length biological replicates with identical biosample ENCFF285LFP bigWig signal p-value ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF329RLT, ENCFF993AWK 300541936 ENCODE Processing Pipeline 906a6ecd1939a2597361782366e93fbc https://www.encodeproject.org/files/ENCFF285LFP/@@download/ENCFF285LFP.bigWig mm10 released low read length biological replicates with identical biosample ENCFF875LMA bigWig fold change over control ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF993AWK 341074776 ENCODE Processing Pipeline 9a7210498e93fc734eaae7e429fe4c26 https://www.encodeproject.org/files/ENCFF875LMA/@@download/ENCFF875LMA.bigWig mm10 released low read length biological replicates with identical biosample ENCFF574WAP bed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF329RLT 2601581 ENCODE Processing Pipeline 27ed251399abb23bd3f1623e6b60c367 https://www.encodeproject.org/files/ENCFF574WAP/@@download/ENCFF574WAP.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF195DQW bigWig signal p-value ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF993AWK 295273070 ENCODE Processing Pipeline b4de2677c58936b086bbfcaa05c44d37 https://www.encodeproject.org/files/ENCFF195DQW/@@download/ENCFF195DQW.bigWig mm10 released low read length biological replicates with identical biosample ENCFF485PYX bigWig signal p-value ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF329RLT 306053465 ENCODE Processing Pipeline 36cdba1d598c4e41cbd0228c9fc68a1c https://www.encodeproject.org/files/ENCFF485PYX/@@download/ENCFF485PYX.bigWig mm10 released low read length biological replicates with identical biosample ENCFF799XHX bigWig fold change over control ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF329RLT 347291429 ENCODE Processing Pipeline 757192d1f2ccd3d8ab1148f50258ac6e https://www.encodeproject.org/files/ENCFF799XHX/@@download/ENCFF799XHX.bigWig mm10 released low read length biological replicates with identical biosample ENCFF623ITO bigWig fold change over control ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF329RLT, ENCFF993AWK 579576397 ENCODE Processing Pipeline e32a5c1b8a04b3ce262a11b83f487588 https://www.encodeproject.org/files/ENCFF623ITO/@@download/ENCFF623ITO.bigWig mm10 released low read length biological replicates with identical biosample ENCFF294QET bed narrowPeak conservative idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF026ZEY, ENCFF383VAH, ENCFF547MET, ENCFF574WAP 98264 ENCODE Processing Pipeline eb287cb037120e45131367492216b4e1 https://www.encodeproject.org/files/ENCFF294QET/@@download/ENCFF294QET.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF399UKJ bed narrowPeak optimal idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF026ZEY, ENCFF383VAH, ENCFF547MET, ENCFF574WAP 105687 ENCODE Processing Pipeline c9d418cd74f7e615293b4e65566197f1 https://www.encodeproject.org/files/ENCFF399UKJ/@@download/ENCFF399UKJ.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF026ZEY bed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF329RLT, ENCFF993AWK 5906703 ENCODE Processing Pipeline fe99af60e13bf2aef0754a3da6f37f40 https://www.encodeproject.org/files/ENCFF026ZEY/@@download/ENCFF026ZEY.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF658MSK bigBed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF383VAH 2307120 ENCODE Processing Pipeline 61200fe28c72ff9778dad3955031a8bf https://www.encodeproject.org/files/ENCFF658MSK/@@download/ENCFF658MSK.bigBed mm10 released low read length biological replicates with identical biosample ENCFF383VAH bed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF993AWK 1033987 ENCODE Processing Pipeline 45e6c227bc8dae211850c5c24f047f72 https://www.encodeproject.org/files/ENCFF383VAH/@@download/ENCFF383VAH.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF433PPH bigBed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF026ZEY 12948727 ENCODE Processing Pipeline a01dfd10b2cd60b7bc1117bfd4617976 https://www.encodeproject.org/files/ENCFF433PPH/@@download/ENCFF433PPH.bigBed mm10 released low read length biological replicates with identical biosample ENCFF031ZTJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF294QET 238930 ENCODE Processing Pipeline 01d4fe8d8da8c897ccaa6a5ec9c0345d https://www.encodeproject.org/files/ENCFF031ZTJ/@@download/ENCFF031ZTJ.bigBed mm10 released low read length biological replicates with identical biosample ENCFF742NIT bigBed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF574WAP 5965965 ENCODE Processing Pipeline 3d5bbda18bf63e7e09f9accc80c417f1 https://www.encodeproject.org/files/ENCFF742NIT/@@download/ENCFF742NIT.bigBed mm10 released low read length biological replicates with identical biosample ENCFF967RVF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF399UKJ 249568 ENCODE Processing Pipeline 0eef896403e191d95829b3e950f81a76 https://www.encodeproject.org/files/ENCFF967RVF/@@download/ENCFF967RVF.bigBed mm10 released low read length biological replicates with identical biosample ENCFF001LMD bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LMJ 281389329 Bing Ren, UCSD dcb9d5cf0381a3661c1cf8e13933059a https://www.encodeproject.org/files/ENCFF001LMD/@@download/ENCFF001LMD.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMF bigBed broadPeak peaks ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAL 289047 Bing Ren, UCSD 68ff05f4dd571e4af8ed7da67516967b https://www.encodeproject.org/files/ENCFF001LMF/@@download/ENCFF001LMF.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMH bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LMR 613203479 Bing Ren, UCSD d640afd8347e851e7dee458b2bee3319 https://www.encodeproject.org/files/ENCFF001LMH/@@download/ENCFF001LMH.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMJ fastq reads ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 275637452 Bing Ren, UCSD 65cf38c7ece1bb54efb2f51bb5a6dce8 https://www.encodeproject.org/files/ENCFF001LMJ/@@download/ENCFF001LMJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF044CWG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMK bigWig signal ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LMD, ENCFF001LMH 65684437 Bing Ren, UCSD f262520277eca9f39ea94161fb36f5e2 https://www.encodeproject.org/files/ENCFF001LMK/@@download/ENCFF001LMK.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMR fastq reads ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 604397421 Bing Ren, UCSD 3363bb3a2dec3ece411047fa6e36a88e https://www.encodeproject.org/files/ENCFF001LMR/@@download/ENCFF001LMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KLI/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001YAL bed broadPeak peaks ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LMD, ENCFF001LMH 173113 Bing Ren, UCSD dbaecc1bbab106ea4bf3bb2d123163fd https://www.encodeproject.org/files/ENCFF001YAL/@@download/ENCFF001YAL.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF839KAL bam unfiltered alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LMR, ENCFF018NEO 655966669 ENCODE Processing Pipeline 9f12adb3cd2771769afeedc635def3a8 https://www.encodeproject.org/files/ENCFF839KAL/@@download/ENCFF839KAL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF685KES bam unfiltered alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LMJ, ENCFF018NEO 303039135 ENCODE Processing Pipeline c5396f92f020a1e18924bdb3ae2af68e https://www.encodeproject.org/files/ENCFF685KES/@@download/ENCFF685KES.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF550JJH bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LMJ, ENCFF018NEO 137276616 ENCODE Processing Pipeline 8d9ba49148b5a9f9bbf0e0856e69470e https://www.encodeproject.org/files/ENCFF550JJH/@@download/ENCFF550JJH.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF884CQM bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LMR, ENCFF018NEO 279244440 ENCODE Processing Pipeline 58f62f754ed950aace4605ea17809213 https://www.encodeproject.org/files/ENCFF884CQM/@@download/ENCFF884CQM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001NMN bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NMP 494112380 Michael Snyder, Stanford c08fb135b80658622f0d37be7f4bcdc0 https://www.encodeproject.org/files/ENCFF001NMN/@@download/ENCFF001NMN.bam mm9 released low read length, low read depth, inconsistent platforms ENCFF001NMO bigBed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIT 1384461 Michael Snyder, Stanford 9f6e1fe3235576129335a1d82f8b7592 https://www.encodeproject.org/files/ENCFF001NMO/@@download/ENCFF001NMO.bigBed mm9 released low read length, low read depth, inconsistent platforms ENCFF001NMP fastq reads ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 924136213 Michael Snyder, Stanford 66ae7802c84fc6688c87174a2d97dab7 https://www.encodeproject.org/files/ENCFF001NMP/@@download/ENCFF001NMP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms ENCFF001NMQ bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NMS 533213079 Michael Snyder, Stanford 6aa070ce9d7b8de0311b70c6256ae1e6 https://www.encodeproject.org/files/ENCFF001NMQ/@@download/ENCFF001NMQ.bam mm9 released low read length, low read depth, inconsistent platforms ENCFF001NMS fastq reads ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1011661612 Michael Snyder, Stanford e48a04e9f8f5422ae79b2f5c1946d05f https://www.encodeproject.org/files/ENCFF001NMS/@@download/ENCFF001NMS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms ENCFF001NMU bigWig signal ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMN, ENCFF001NMQ 226184010 Michael Snyder, Stanford d60a26c9d6092d6943dd060fe9a2e2eb https://www.encodeproject.org/files/ENCFF001NMU/@@download/ENCFF001NMU.bigWig mm9 released low read length, low read depth, inconsistent platforms ENCFF001YIT bed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMN, ENCFF001NMQ 669329 Michael Snyder, Stanford 3f20cb242c71439f83de39017524b6bf https://www.encodeproject.org/files/ENCFF001YIT/@@download/ENCFF001YIT.bed.gz mm9 released low read length, low read depth, inconsistent platforms ENCFF999SAQ bam unfiltered alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMP, ENCFF018NEO 1003203387 ENCODE Processing Pipeline b702997519e36934161170e22522b008 https://www.encodeproject.org/files/ENCFF999SAQ/@@download/ENCFF999SAQ.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF066VLL bam unfiltered alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMS, ENCFF018NEO 1090816579 ENCODE Processing Pipeline 6c47e143fc4c6c0cd020ff07acb61571 https://www.encodeproject.org/files/ENCFF066VLL/@@download/ENCFF066VLL.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF754UEE bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMP, ENCFF018NEO 682441286 ENCODE Processing Pipeline 4c45757dee1937c09541e5130579e17b https://www.encodeproject.org/files/ENCFF754UEE/@@download/ENCFF754UEE.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF815TDD bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMS, ENCFF018NEO 749079174 ENCODE Processing Pipeline c80bfb8a648b19ee92e630a9848305c5 https://www.encodeproject.org/files/ENCFF815TDD/@@download/ENCFF815TDD.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF326ZKJ bigWig signal p-value ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF754UEE 239870441 ENCODE Processing Pipeline cbe949eaf5b7ae11b3c37189cfab058e https://www.encodeproject.org/files/ENCFF326ZKJ/@@download/ENCFF326ZKJ.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF016KRY bigWig signal p-value ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF754UEE, ENCFF815TDD 223874434 ENCODE Processing Pipeline f7497e08df7d3e94b8e965f6fe20625b https://www.encodeproject.org/files/ENCFF016KRY/@@download/ENCFF016KRY.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF566EMP bigWig signal p-value ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF815TDD 241747612 ENCODE Processing Pipeline c4eb3c9b8dbcdd584e2bca01b80e3126 https://www.encodeproject.org/files/ENCFF566EMP/@@download/ENCFF566EMP.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF136EEQ bigWig fold change over control ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF815TDD 302527400 ENCODE Processing Pipeline ff633175c41a34a49cc32416b88898fe https://www.encodeproject.org/files/ENCFF136EEQ/@@download/ENCFF136EEQ.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF210IYE bigWig fold change over control ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF754UEE 286299166 ENCODE Processing Pipeline c3cab5faec702ae2715ee9fd18b787d9 https://www.encodeproject.org/files/ENCFF210IYE/@@download/ENCFF210IYE.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF365FLT bigWig fold change over control ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF754UEE, ENCFF815TDD 507274311 ENCODE Processing Pipeline 0c4daa6cc9779f93ef9007d50caf9e7a https://www.encodeproject.org/files/ENCFF365FLT/@@download/ENCFF365FLT.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF441NPO bed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF754UEE 4454703 ENCODE Processing Pipeline af5e1aea74440d739a7af343a649e42c https://www.encodeproject.org/files/ENCFF441NPO/@@download/ENCFF441NPO.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF572NST bed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF815TDD 4757189 ENCODE Processing Pipeline ae920262ced3f32f413f687961061029 https://www.encodeproject.org/files/ENCFF572NST/@@download/ENCFF572NST.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF728MLD bigBed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF441NPO 10530744 ENCODE Processing Pipeline 046794c250dc46d4734d2b36c9c11e71 https://www.encodeproject.org/files/ENCFF728MLD/@@download/ENCFF728MLD.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF870MFE bigBed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF572NST 10718007 ENCODE Processing Pipeline d91b19fb4c951aac7c209c73975dd36a https://www.encodeproject.org/files/ENCFF870MFE/@@download/ENCFF870MFE.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF646FIZ bed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF754UEE, ENCFF815TDD 6329053 ENCODE Processing Pipeline 8a92e5defb1ceb2aaea950c4e1d19a65 https://www.encodeproject.org/files/ENCFF646FIZ/@@download/ENCFF646FIZ.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF321SFZ bed narrowPeak conservative idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF441NPO, ENCFF547MET, ENCFF572NST, ENCFF646FIZ 541374 ENCODE Processing Pipeline d078c8559ba942b5c18da56f58aea993 https://www.encodeproject.org/files/ENCFF321SFZ/@@download/ENCFF321SFZ.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF197RFK bigBed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF646FIZ 13202151 ENCODE Processing Pipeline 41ccd7db39836b1d23158fa63c495276 https://www.encodeproject.org/files/ENCFF197RFK/@@download/ENCFF197RFK.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF561HFB bed narrowPeak optimal idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF441NPO, ENCFF547MET, ENCFF572NST, ENCFF646FIZ 554771 ENCODE Processing Pipeline b74cebaea8173499b5e08c84a42c358e https://www.encodeproject.org/files/ENCFF561HFB/@@download/ENCFF561HFB.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF619TGD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF321SFZ 1066327 ENCODE Processing Pipeline 1701281e3d89a262e8302f54d82c1581 https://www.encodeproject.org/files/ENCFF619TGD/@@download/ENCFF619TGD.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF296CTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF561HFB 1086489 ENCODE Processing Pipeline 140bf988b6e483521ebc716554e7a234 https://www.encodeproject.org/files/ENCFF296CTA/@@download/ENCFF296CTA.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF001MPV bam alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MPZ 1769722139 Ross Hardison, PennState 019bb9f23fa9d869e3adc191b33cb60a https://www.encodeproject.org/files/ENCFF001MPV/@@download/ENCFF001MPV.bam mm9 released low read length, inconsistent platforms ENCFF001MPW bigBed broadPeak peaks ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFK 222676 Ross Hardison, PennState 1cb01755fdcdf77c01424e435e266429 https://www.encodeproject.org/files/ENCFF001MPW/@@download/ENCFF001MPW.bigBed mm9 released low read length, inconsistent platforms ENCFF001MPY bigWig signal ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 3489528356 Ross Hardison, PennState ba18e57588484928fbac8f09934fa508 https://www.encodeproject.org/files/ENCFF001MPY/@@download/ENCFF001MPY.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MPZ fastq reads ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1425444657 Ross Hardison, PennState 31554e22b8eb442f62e1d0cce8873d48 https://www.encodeproject.org/files/ENCFF001MPZ/@@download/ENCFF001MPZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MQZ/ released low read length, inconsistent control read length, inconsistent platforms ENCFF001YFK bed broadPeak peaks ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 81782 Ross Hardison, PennState 8ef9bbaa5a7a1650ce214967322dca0c https://www.encodeproject.org/files/ENCFF001YFK/@@download/ENCFF001YFK.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF205JYY bam unfiltered alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MPZ, ENCFF018NEO 1869606851 ENCODE Processing Pipeline 988294aaba93d07ad1237c4cfcef0950 https://www.encodeproject.org/files/ENCFF205JYY/@@download/ENCFF205JYY.bam mm10 released low read length, inconsistent platforms ENCFF415NQQ bam alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MPZ, ENCFF018NEO 1314652720 ENCODE Processing Pipeline 9106e82e784d1cfe2931995cc2285cf3 https://www.encodeproject.org/files/ENCFF415NQQ/@@download/ENCFF415NQQ.bam mm10 released low read length, inconsistent platforms ENCFF001NFD bigBed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHS 1313916 Michael Snyder, Stanford f23fa856a519646ae01f7795c968083c https://www.encodeproject.org/files/ENCFF001NFD/@@download/ENCFF001NFD.bigBed mm9 released low read length ENCFF001NFE bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NFO 563205768 Michael Snyder, Stanford c13aa544c39a290dfbbd1523aaaec444 https://www.encodeproject.org/files/ENCFF001NFE/@@download/ENCFF001NFE.bam mm9 released low read length ENCFF001NFF bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NFP 559460699 Michael Snyder, Stanford f7bf914e461d8319fedc01b7d821f312 https://www.encodeproject.org/files/ENCFF001NFF/@@download/ENCFF001NFF.bam mm9 released low read length ENCFF001NFG bigWig signal ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFE, ENCFF001NFF 381074851 Michael Snyder, Stanford 6631652b75833b1736c48bdbea51cbad https://www.encodeproject.org/files/ENCFF001NFG/@@download/ENCFF001NFG.bigWig mm9 released low read length ENCFF001NFO fastq reads ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1038080396 Michael Snyder, Stanford ab7f5b455febbefc40bf1063881ffbdf https://www.encodeproject.org/files/ENCFF001NFO/@@download/ENCFF001NFO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length ENCFF001NFP fastq reads ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1065392168 Michael Snyder, Stanford e57e20c4b0626c35fde488f4280bd0e2 https://www.encodeproject.org/files/ENCFF001NFP/@@download/ENCFF001NFP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length ENCFF001YHS bed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFE, ENCFF001NFF 528171 Michael Snyder, Stanford 37a829f443c95f4305a650e9e9f17002 https://www.encodeproject.org/files/ENCFF001YHS/@@download/ENCFF001YHS.bed.gz mm9 released low read length ENCFF692ZEM bam unfiltered alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFO, ENCFF018NEO 1221514350 ENCODE Processing Pipeline 591b77e9e4522cb5fae676f23d96589e https://www.encodeproject.org/files/ENCFF692ZEM/@@download/ENCFF692ZEM.bam mm10 released low read length ENCFF511EZN bam unfiltered alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFP, ENCFF018NEO 1254683878 ENCODE Processing Pipeline c101138c6341f382a200e1aa1a5ffc1d https://www.encodeproject.org/files/ENCFF511EZN/@@download/ENCFF511EZN.bam mm10 released low read length ENCFF604WSX bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFO, ENCFF018NEO 836383482 ENCODE Processing Pipeline b63eb2d07cca445f32af232802b9d6f1 https://www.encodeproject.org/files/ENCFF604WSX/@@download/ENCFF604WSX.bam mm10 released low read length ENCFF344JSI bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFP, ENCFF018NEO 850474686 ENCODE Processing Pipeline 37cd6fececc39eaecf25515f3dfdfdd9 https://www.encodeproject.org/files/ENCFF344JSI/@@download/ENCFF344JSI.bam mm10 released low read length ENCFF168XRD bigWig signal p-value ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF604WSX 216852455 ENCODE Processing Pipeline 668b4d627bde21102145436a74a0d394 https://www.encodeproject.org/files/ENCFF168XRD/@@download/ENCFF168XRD.bigWig mm10 released low read length ENCFF772AEI bigWig fold change over control ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF604WSX 339165633 ENCODE Processing Pipeline ddeb7363c55cac1574a819f411d6acd8 https://www.encodeproject.org/files/ENCFF772AEI/@@download/ENCFF772AEI.bigWig mm10 released low read length ENCFF834CCS bigWig signal p-value ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF344JSI 209651670 ENCODE Processing Pipeline 162ef3c07abc2dc361f55104bc9c01db https://www.encodeproject.org/files/ENCFF834CCS/@@download/ENCFF834CCS.bigWig mm10 released low read length ENCFF901YZD bigWig signal p-value ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF344JSI, ENCFF604WSX 214018040 ENCODE Processing Pipeline 4677992e24a26a4ca51ac56052caa48f https://www.encodeproject.org/files/ENCFF901YZD/@@download/ENCFF901YZD.bigWig mm10 released low read length ENCFF980KPP bigWig fold change over control ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF344JSI 331604382 ENCODE Processing Pipeline 74055bf55b99cef33b2027e79933ec6d https://www.encodeproject.org/files/ENCFF980KPP/@@download/ENCFF980KPP.bigWig mm10 released low read length ENCFF030WPJ bed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF604WSX 5270893 ENCODE Processing Pipeline 18da8464bfc54f451492b0cc2c01d7b9 https://www.encodeproject.org/files/ENCFF030WPJ/@@download/ENCFF030WPJ.bed.gz mm10 released low read length ENCFF174LRE bigWig fold change over control ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF344JSI, ENCFF604WSX 582485035 ENCODE Processing Pipeline 695d8e9fb5289e9191db6085715fc114 https://www.encodeproject.org/files/ENCFF174LRE/@@download/ENCFF174LRE.bigWig mm10 released low read length ENCFF433YEA bed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF344JSI 5107233 ENCODE Processing Pipeline 6e4d4a65b68793961babb6dbd0ecdf4a https://www.encodeproject.org/files/ENCFF433YEA/@@download/ENCFF433YEA.bed.gz mm10 released low read length ENCFF337BFS bed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF344JSI, ENCFF604WSX 5843610 ENCODE Processing Pipeline 139b77dfb8500ce83c37bf69c340a0cb https://www.encodeproject.org/files/ENCFF337BFS/@@download/ENCFF337BFS.bed.gz mm10 released low read length ENCFF155DEQ bigBed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF030WPJ 12793712 ENCODE Processing Pipeline 8c8f90b766d1cf256fd6ee01f2561922 https://www.encodeproject.org/files/ENCFF155DEQ/@@download/ENCFF155DEQ.bigBed mm10 released low read length ENCFF527JJE bigBed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF433YEA 12710187 ENCODE Processing Pipeline 4eaf42e58659d9a836c811b0dab00115 https://www.encodeproject.org/files/ENCFF527JJE/@@download/ENCFF527JJE.bigBed mm10 released low read length ENCFF519ZKT bigBed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF337BFS 12865579 ENCODE Processing Pipeline b1c55f46d8e0c8939064fe4783aaa0e9 https://www.encodeproject.org/files/ENCFF519ZKT/@@download/ENCFF519ZKT.bigBed mm10 released low read length ENCFF785BWF bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF114ZUG 757025 ENCODE Processing Pipeline f6593a4e2f5c03e87ed8cc4655dcd511 https://www.encodeproject.org/files/ENCFF785BWF/@@download/ENCFF785BWF.bigBed mm10 released low read length ENCFF114ZUG bed narrowPeak conservative idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF030WPJ, ENCFF337BFS, ENCFF433YEA, ENCFF547MET 393259 ENCODE Processing Pipeline a57697e3210d379e2cbbaca42e4b0dac https://www.encodeproject.org/files/ENCFF114ZUG/@@download/ENCFF114ZUG.bed.gz mm10 released low read length ENCFF305VBR bed narrowPeak optimal idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF030WPJ, ENCFF337BFS, ENCFF433YEA, ENCFF547MET 404497 ENCODE Processing Pipeline 3a1fe51a2e6f8e6fbbe2204d95d855f0 https://www.encodeproject.org/files/ENCFF305VBR/@@download/ENCFF305VBR.bed.gz mm10 released low read length ENCFF403EAW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF305VBR 774312 ENCODE Processing Pipeline b8f4eece13b90e7dcf21f98355303a1f https://www.encodeproject.org/files/ENCFF403EAW/@@download/ENCFF403EAW.bigBed mm10 released low read length ENCFF001NVN bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NWK 473692261 Michael Snyder, Stanford fb1ca3fd709f6ff804e52ab438bad7bf https://www.encodeproject.org/files/ENCFF001NVN/@@download/ENCFF001NVN.bam mm9 released low read length biological replicates with identical biosample ENCFF001NVP bigBed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJS 510287 Michael Snyder, Stanford 3c4ef69a2539bd1df8c22d886522e295 https://www.encodeproject.org/files/ENCFF001NVP/@@download/ENCFF001NVP.bigBed mm9 released low read length biological replicates with identical biosample ENCFF001NVS bigWig signal ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVN, ENCFF001NVT 373872829 Michael Snyder, Stanford 3c07533baab9fc81a65549a4ad45a428 https://www.encodeproject.org/files/ENCFF001NVS/@@download/ENCFF001NVS.bigWig mm9 released low read length biological replicates with identical biosample ENCFF001NVT bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NWG 529277995 Michael Snyder, Stanford 79b6b450a990bd8c0a2c11b968efe4bb https://www.encodeproject.org/files/ENCFF001NVT/@@download/ENCFF001NVT.bam mm9 released low read length biological replicates with identical biosample ENCFF001NWG fastq reads ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1118627986 Michael Snyder, Stanford 444c45a755c5cc255b1e862f81d9d306 https://www.encodeproject.org/files/ENCFF001NWG/@@download/ENCFF001NWG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length biological replicates with identical biosample ENCFF001NWK fastq reads ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1491028464 Michael Snyder, Stanford 3489959098e292859c2e2984e0cef30b https://www.encodeproject.org/files/ENCFF001NWK/@@download/ENCFF001NWK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length biological replicates with identical biosample ENCFF001YJS bed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVN, ENCFF001NVT 227617 Michael Snyder, Stanford 4e3432f4a0be9b2eb129a60f297366f6 https://www.encodeproject.org/files/ENCFF001YJS/@@download/ENCFF001YJS.bed.gz mm9 released low read length biological replicates with identical biosample ENCFF059FER bam unfiltered alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWK, ENCFF018NEO 1738469358 ENCODE Processing Pipeline 0e426a2ebb076076d7e2aae5803ebc43 https://www.encodeproject.org/files/ENCFF059FER/@@download/ENCFF059FER.bam mm10 released low read length biological replicates with identical biosample ENCFF099FXG bam unfiltered alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWG, ENCFF018NEO 1326225116 ENCODE Processing Pipeline 7188ee984fdc222f1568984779398b19 https://www.encodeproject.org/files/ENCFF099FXG/@@download/ENCFF099FXG.bam mm10 released low read length biological replicates with identical biosample ENCFF134EZT bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWG, ENCFF018NEO 878161766 ENCODE Processing Pipeline 2d672c14214cb4609cee91f7eece0049 https://www.encodeproject.org/files/ENCFF134EZT/@@download/ENCFF134EZT.bam mm10 released low read length biological replicates with identical biosample ENCFF575MON bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWK, ENCFF018NEO 1132869165 ENCODE Processing Pipeline 0f20756ccdc361f2476d5cee21be03f0 https://www.encodeproject.org/files/ENCFF575MON/@@download/ENCFF575MON.bam mm10 released low read length biological replicates with identical biosample ENCFF005XIM bigWig signal p-value ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF575MON 297776597 ENCODE Processing Pipeline aa44b6e3be01bb6d6135e1431d3ae5f9 https://www.encodeproject.org/files/ENCFF005XIM/@@download/ENCFF005XIM.bigWig mm10 released low read length biological replicates with identical biosample ENCFF283TDH bigWig signal p-value ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF134EZT, ENCFF171OVT 310344570 ENCODE Processing Pipeline 7b74b1015d42723a1e220cb8800a7da9 https://www.encodeproject.org/files/ENCFF283TDH/@@download/ENCFF283TDH.bigWig mm10 released low read length biological replicates with identical biosample ENCFF595BMC bigWig fold change over control ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF575MON 414345684 ENCODE Processing Pipeline 2b28b2948ae30499b7051e25be11a52a https://www.encodeproject.org/files/ENCFF595BMC/@@download/ENCFF595BMC.bigWig mm10 released low read length biological replicates with identical biosample ENCFF758JAU bed narrowPeak conservative idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF145IUH, ENCFF289XJE, ENCFF324WCV, ENCFF547MET 507439 ENCODE Processing Pipeline e28e2a347337e3768e0a78dcf591b511 https://www.encodeproject.org/files/ENCFF758JAU/@@download/ENCFF758JAU.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF693NDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF758JAU 1098971 ENCODE Processing Pipeline 64ad43d06a3ca0c17b65d5f6856f338b https://www.encodeproject.org/files/ENCFF693NDZ/@@download/ENCFF693NDZ.bigBed mm10 released low read length biological replicates with identical biosample ENCFF368ANL bigWig fold change over control ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF134EZT, ENCFF171OVT, ENCFF575MON 633253285 ENCODE Processing Pipeline 7e9a004908c322be24f9b3afbd634f9b https://www.encodeproject.org/files/ENCFF368ANL/@@download/ENCFF368ANL.bigWig mm10 released low read length biological replicates with identical biosample ENCFF324WCV bed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF575MON 5801480 ENCODE Processing Pipeline 73831a99628812a4e8627abf084aa7d2 https://www.encodeproject.org/files/ENCFF324WCV/@@download/ENCFF324WCV.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF402HPW bigWig signal p-value ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF134EZT, ENCFF171OVT, ENCFF575MON 282134110 ENCODE Processing Pipeline 7baa9002024fe60beabf7e81061bd58d https://www.encodeproject.org/files/ENCFF402HPW/@@download/ENCFF402HPW.bigWig mm10 released low read length biological replicates with identical biosample ENCFF765VAO bigWig fold change over control ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF134EZT, ENCFF171OVT 363175682 ENCODE Processing Pipeline 2e68102df215f584c5c71aa4e486c1c0 https://www.encodeproject.org/files/ENCFF765VAO/@@download/ENCFF765VAO.bigWig mm10 released low read length biological replicates with identical biosample ENCFF472SCH bigBed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF289XJE 13071607 ENCODE Processing Pipeline a5cc38fd1115920d582a3b440e406484 https://www.encodeproject.org/files/ENCFF472SCH/@@download/ENCFF472SCH.bigBed mm10 released low read length biological replicates with identical biosample ENCFF145IUH bed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF134EZT, ENCFF171OVT, ENCFF575MON 6363217 ENCODE Processing Pipeline e80e38bb79eb0dc94f4a81301377af01 https://www.encodeproject.org/files/ENCFF145IUH/@@download/ENCFF145IUH.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF212HMJ bigBed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF145IUH 12984106 ENCODE Processing Pipeline 28ea1f0acbd22c6d44c56af13dc7991c https://www.encodeproject.org/files/ENCFF212HMJ/@@download/ENCFF212HMJ.bigBed mm10 released low read length biological replicates with identical biosample ENCFF642PGG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF716KJE 1129979 ENCODE Processing Pipeline e1eeed42838dc5f2313aad43ec2000ba https://www.encodeproject.org/files/ENCFF642PGG/@@download/ENCFF642PGG.bigBed mm10 released low read length biological replicates with identical biosample ENCFF289XJE bed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF134EZT, ENCFF171OVT 5517418 ENCODE Processing Pipeline f5730b3e57f57b1a90ec8c69c695e19f https://www.encodeproject.org/files/ENCFF289XJE/@@download/ENCFF289XJE.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF980ALT bigBed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF324WCV 13074700 ENCODE Processing Pipeline c996e30489afa0bca52aaa6c02153fae https://www.encodeproject.org/files/ENCFF980ALT/@@download/ENCFF980ALT.bigBed mm10 released low read length biological replicates with identical biosample ENCFF716KJE bed narrowPeak optimal idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF145IUH, ENCFF289XJE, ENCFF324WCV, ENCFF547MET 525778 ENCODE Processing Pipeline 4a9a31c17efae46e029d29a6f46f9a09 https://www.encodeproject.org/files/ENCFF716KJE/@@download/ENCFF716KJE.bed.gz mm10 released low read length biological replicates with identical biosample ENCFF001NYH bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NYS 406824707 Michael Snyder, Stanford f2f2a7364d90f9d8843403afe8efb344 https://www.encodeproject.org/files/ENCFF001NYH/@@download/ENCFF001NYH.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYJ bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NYW 412604098 Michael Snyder, Stanford 295164f0822a843a2a595ffa6becea3c https://www.encodeproject.org/files/ENCFF001NYJ/@@download/ENCFF001NYJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYL bigWig signal ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYH, ENCFF001NYJ 306089222 Michael Snyder, Stanford 373fd396628e29e6db2feda1035627a7 https://www.encodeproject.org/files/ENCFF001NYL/@@download/ENCFF001NYL.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYS fastq reads ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 830401679 Michael Snyder, Stanford beffb9ed76538b0974ec0b40613fd892 https://www.encodeproject.org/files/ENCFF001NYS/@@download/ENCFF001NYS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYW fastq reads ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 834040149 Michael Snyder, Stanford 070f886a7b00767cf0c772c410c987e2 https://www.encodeproject.org/files/ENCFF001NYW/@@download/ENCFF001NYW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001YKC bed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYH, ENCFF001NYJ 667063 Michael Snyder, Stanford 4c2f0c43503b0af66de1740694a3a557 https://www.encodeproject.org/files/ENCFF001YKC/@@download/ENCFF001YKC.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF011KPY bigBed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYH, ENCFF001NYJ 1570028 ENCODE Consortium 213cdc36790ba5c844568c13332c9633 https://www.encodeproject.org/files/ENCFF011KPY/@@download/ENCFF011KPY.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF524MMG bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYS, ENCFF018NEO 597649095 ENCODE Processing Pipeline 4db7a883ac01906dbdec5dde29dc2069 https://www.encodeproject.org/files/ENCFF524MMG/@@download/ENCFF524MMG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF755CWT bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYW, ENCFF018NEO 618654297 ENCODE Processing Pipeline 80fe7cf10cedae9caf422e9d9fe0b02e https://www.encodeproject.org/files/ENCFF755CWT/@@download/ENCFF755CWT.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF471IHA bam unfiltered alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYW, ENCFF018NEO 962133352 ENCODE Processing Pipeline 8508462f50c6b3e560d1e00bfa00b83c https://www.encodeproject.org/files/ENCFF471IHA/@@download/ENCFF471IHA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF346GYV bam unfiltered alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYS, ENCFF018NEO 948893173 ENCODE Processing Pipeline 46eb218556e967c8d845580a8ae41e39 https://www.encodeproject.org/files/ENCFF346GYV/@@download/ENCFF346GYV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF757HWH bed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF524MMG, ENCFF755CWT 5200165 ENCODE Processing Pipeline 1460144741a98d8477e1e18cbbc3dec7 https://www.encodeproject.org/files/ENCFF757HWH/@@download/ENCFF757HWH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF030XGA bigWig signal p-value ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF524MMG 313187924 ENCODE Processing Pipeline 6fee7acd109341c842765fb39835b7d7 https://www.encodeproject.org/files/ENCFF030XGA/@@download/ENCFF030XGA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF782UUZ bigWig signal p-value ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF524MMG, ENCFF755CWT 314824850 ENCODE Processing Pipeline 99bd4344b01b95752a200dfb0d8a1eec https://www.encodeproject.org/files/ENCFF782UUZ/@@download/ENCFF782UUZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF304LIF bigWig signal p-value ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF755CWT 317760514 ENCODE Processing Pipeline 67c500f2f72555ba949310d018c0308f https://www.encodeproject.org/files/ENCFF304LIF/@@download/ENCFF304LIF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF527GUY bigWig fold change over control ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF524MMG, ENCFF755CWT 468719760 ENCODE Processing Pipeline 5782cbfaecc6b6fcadfc6d98a04635bc https://www.encodeproject.org/files/ENCFF527GUY/@@download/ENCFF527GUY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF265SWL bigWig fold change over control ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF524MMG 275922140 ENCODE Processing Pipeline 78de448bded3600bcb34133e7fbcd49c https://www.encodeproject.org/files/ENCFF265SWL/@@download/ENCFF265SWL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF183VEN bigWig fold change over control ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF755CWT 286870758 ENCODE Processing Pipeline 3ee5c2714b18db4cd33a0ae76be37d38 https://www.encodeproject.org/files/ENCFF183VEN/@@download/ENCFF183VEN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF052WVD bigBed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF865CMY 10485766 ENCODE Processing Pipeline 94d91d462720827a1fcc414f3bdb63ac https://www.encodeproject.org/files/ENCFF052WVD/@@download/ENCFF052WVD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF865CMY bed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF524MMG 4619113 ENCODE Processing Pipeline 6958a2f5b199dc2aec04d4372e5226b6 https://www.encodeproject.org/files/ENCFF865CMY/@@download/ENCFF865CMY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF781DWI bed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF755CWT 4458569 ENCODE Processing Pipeline e16c2ac3b120c822a7f5e57567664280 https://www.encodeproject.org/files/ENCFF781DWI/@@download/ENCFF781DWI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF605EMF bigBed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF781DWI 10334166 ENCODE Processing Pipeline 52873e6713c0767446158e287ab7a67e https://www.encodeproject.org/files/ENCFF605EMF/@@download/ENCFF605EMF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF408HYG bigBed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF757HWH 11140596 ENCODE Processing Pipeline 1f25cc39bedcd941b9a1cffb7ba8945c https://www.encodeproject.org/files/ENCFF408HYG/@@download/ENCFF408HYG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF390APP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF440YEH 868252 ENCODE Processing Pipeline aeb9f1d2d251f150db5d71ca039ea7fd https://www.encodeproject.org/files/ENCFF390APP/@@download/ENCFF390APP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF884NAG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF791EKG 951123 ENCODE Processing Pipeline 2c3290737c60fc48f215eb145115ef97 https://www.encodeproject.org/files/ENCFF884NAG/@@download/ENCFF884NAG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF440YEH bed narrowPeak conservative idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF757HWH, ENCFF781DWI, ENCFF865CMY 450479 ENCODE Processing Pipeline 364aa808af6c11c1db08c2d189a49ff8 https://www.encodeproject.org/files/ENCFF440YEH/@@download/ENCFF440YEH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF791EKG bed narrowPeak optimal idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF757HWH, ENCFF781DWI, ENCFF865CMY 510101 ENCODE Processing Pipeline b647d54fbffd121a72cd60c06deda226 https://www.encodeproject.org/files/ENCFF791EKG/@@download/ENCFF791EKG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF390DAS fastq reads ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1195087204 Richard Myers, HAIB c90f9489a9f90ea5b9199ca6bc628d81 SRA:SRR5111187 https://www.encodeproject.org/files/ENCFF390DAS/@@download/ENCFF390DAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF853NEA/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF837KZY fastq reads ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 975495120 Richard Myers, HAIB dbf65d0e00339744349c0c3a2412933e SRA:SRR5111188 https://www.encodeproject.org/files/ENCFF837KZY/@@download/ENCFF837KZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF853NEA/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF867KTT bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390DAS, ENCFF806TVZ 809439774 ENCODE Processing Pipeline 091c27200104fa3742f8ff808d0643b5 https://www.encodeproject.org/files/ENCFF867KTT/@@download/ENCFF867KTT.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF698YTR bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF806TVZ, ENCFF837KZY 638032982 ENCODE Processing Pipeline e4f8be54e8605755cbc08b71eb28393c https://www.encodeproject.org/files/ENCFF698YTR/@@download/ENCFF698YTR.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF270JZZ bam unfiltered alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 981304919 ENCODE Processing Pipeline 76359bee6ef276adb8c434b7e06c09e3 https://www.encodeproject.org/files/ENCFF270JZZ/@@download/ENCFF270JZZ.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF146SNM bam unfiltered alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 1149685089 ENCODE Processing Pipeline 0c3e6e87eb475d7b6702260d367b9c1c https://www.encodeproject.org/files/ENCFF146SNM/@@download/ENCFF146SNM.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF538PLQ bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 809379754 ENCODE Processing Pipeline 58facf9f934b37fd7e94374e3e20ef2c https://www.encodeproject.org/files/ENCFF538PLQ/@@download/ENCFF538PLQ.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF669IDD bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 637979380 ENCODE Processing Pipeline c20d065504a33aa9a664a9004e1e3f57 https://www.encodeproject.org/files/ENCFF669IDD/@@download/ENCFF669IDD.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF758LAP bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 367126109 ENCODE Processing Pipeline c340a6a64a4ffbdedc1c851898728188 https://www.encodeproject.org/files/ENCFF758LAP/@@download/ENCFF758LAP.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF568EDT bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 315275114 ENCODE Processing Pipeline 7340123bfc2e38c968354d8c754cc6eb https://www.encodeproject.org/files/ENCFF568EDT/@@download/ENCFF568EDT.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF193CUU bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 321659305 ENCODE Processing Pipeline 2c64aab28bbc7bd4c3c2ca108957b39e https://www.encodeproject.org/files/ENCFF193CUU/@@download/ENCFF193CUU.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF349HWD bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 409676940 ENCODE Processing Pipeline 72348494b3909f946a61538213743729 https://www.encodeproject.org/files/ENCFF349HWD/@@download/ENCFF349HWD.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF408VND bed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 4966337 ENCODE Processing Pipeline c054e8229f056eba4a6f9695d15f9751 https://www.encodeproject.org/files/ENCFF408VND/@@download/ENCFF408VND.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF739KHJ bigBed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF408VND 10964162 ENCODE Processing Pipeline d85c12a8cd7aebd95f3d28f0a0f561ed https://www.encodeproject.org/files/ENCFF739KHJ/@@download/ENCFF739KHJ.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF526QWN bigBed narrowPeak conservative idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF187ZKI 1510977 ENCODE Processing Pipeline 546712d1f9859974ec75863730053727 https://www.encodeproject.org/files/ENCFF526QWN/@@download/ENCFF526QWN.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF114ZDH bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 279913528 ENCODE Processing Pipeline 011a513c592606fc6d323fe1f69d84f7 https://www.encodeproject.org/files/ENCFF114ZDH/@@download/ENCFF114ZDH.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF875IOM bigBed narrowPeak optimal idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF784YSO 2084531 ENCODE Processing Pipeline d9b3993648f6c48c2d4a878303a79368 https://www.encodeproject.org/files/ENCFF875IOM/@@download/ENCFF875IOM.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF784YSO bed narrowPeak optimal idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF381LLL, ENCFF408VND, ENCFF547MET, ENCFF694LLR 1043514 ENCODE Processing Pipeline db9ea3d68f32df3614efaf7db13de409 https://www.encodeproject.org/files/ENCFF784YSO/@@download/ENCFF784YSO.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF083ZQN bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 501094311 ENCODE Processing Pipeline dc2d0a086f57df62ba22287d64c46b80 https://www.encodeproject.org/files/ENCFF083ZQN/@@download/ENCFF083ZQN.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF381LLL bed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 5237998 ENCODE Processing Pipeline b72e863e5e9325a8e4356c3cca172882 https://www.encodeproject.org/files/ENCFF381LLL/@@download/ENCFF381LLL.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF694LLR bed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 5642697 ENCODE Processing Pipeline 8615a9030fa4e2a46866e917f66c679d https://www.encodeproject.org/files/ENCFF694LLR/@@download/ENCFF694LLR.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF834LET bigBed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF381LLL 13269597 ENCODE Processing Pipeline 7eb9936a0b01ccda19314389efab0ef7 https://www.encodeproject.org/files/ENCFF834LET/@@download/ENCFF834LET.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF354XFA bigBed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF694LLR 11233714 ENCODE Processing Pipeline 6fdd2ee684037ade0cd76d198ab81da6 https://www.encodeproject.org/files/ENCFF354XFA/@@download/ENCFF354XFA.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF187ZKI bed narrowPeak conservative idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF381LLL, ENCFF408VND, ENCFF547MET, ENCFF694LLR 953605 ENCODE Processing Pipeline cc1d6bb82873299c9e48a9a1ef5a99a1 https://www.encodeproject.org/files/ENCFF187ZKI/@@download/ENCFF187ZKI.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF001NJS bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NKK 443318916 Michael Snyder, Stanford 933af9f32e41b3af676918dc543a771d https://www.encodeproject.org/files/ENCFF001NJS/@@download/ENCFF001NJS.bam mm9 released low read length ENCFF001NJT bigBed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YII 1852234 Michael Snyder, Stanford f8b426eb61065bc0429f2dd5eb6accca https://www.encodeproject.org/files/ENCFF001NJT/@@download/ENCFF001NJT.bigBed mm9 released low read length ENCFF001NJV bigWig signal ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJS, ENCFF001NJW 360945938 Michael Snyder, Stanford 89e48e9511469d86cbd9303ef7e07869 https://www.encodeproject.org/files/ENCFF001NJV/@@download/ENCFF001NJV.bigWig mm9 released low read length ENCFF001NJW bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NKH 517415073 Michael Snyder, Stanford 3f6e58e2391c8af0bf7bac7ca6940e17 https://www.encodeproject.org/files/ENCFF001NJW/@@download/ENCFF001NJW.bam mm9 released low read length ENCFF001NKH fastq reads ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1275305507 Michael Snyder, Stanford 7e58dbc94286274a3c4a61183bd78ae8 https://www.encodeproject.org/files/ENCFF001NKH/@@download/ENCFF001NKH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length ENCFF001NKK fastq reads ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1656020766 Michael Snyder, Stanford 21303612cab8d0ba76199b7f28ac5ebb https://www.encodeproject.org/files/ENCFF001NKK/@@download/ENCFF001NKK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length ENCFF001YII bed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJS, ENCFF001NJW 767734 Michael Snyder, Stanford 721e2a69fd92687b0b63f81cdc8b1fe9 https://www.encodeproject.org/files/ENCFF001YII/@@download/ENCFF001YII.bed.gz mm9 released low read length ENCFF068SKN bam unfiltered alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKH, ENCFF018NEO 1483651102 ENCODE Processing Pipeline a3c5b0874139cc452d238c97de49c705 https://www.encodeproject.org/files/ENCFF068SKN/@@download/ENCFF068SKN.bam mm10 released low read length ENCFF294BFI bam unfiltered alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKK, ENCFF018NEO 1892470305 ENCODE Processing Pipeline 2baa63c414f3b73461ed9397d5abfc00 https://www.encodeproject.org/files/ENCFF294BFI/@@download/ENCFF294BFI.bam mm10 released low read length ENCFF247SZV bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKK, ENCFF018NEO 1205781081 ENCODE Processing Pipeline b47532b1c7381ba3221be3db444836f7 https://www.encodeproject.org/files/ENCFF247SZV/@@download/ENCFF247SZV.bam mm10 released low read length ENCFF717CZQ bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKH, ENCFF018NEO 977972685 ENCODE Processing Pipeline dac2bd715902766aee0af291e4d30622 https://www.encodeproject.org/files/ENCFF717CZQ/@@download/ENCFF717CZQ.bam mm10 released low read length ENCFF468ABM bigWig signal p-value ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF247SZV, ENCFF339ZWC 235812816 ENCODE Processing Pipeline c3362931318690364169cf309ac3866a https://www.encodeproject.org/files/ENCFF468ABM/@@download/ENCFF468ABM.bigWig mm10 released low read length ENCFF801XTY bigWig signal p-value ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF717CZQ 222875477 ENCODE Processing Pipeline c81ae0c330afacadb4093e0a64c74ee2 https://www.encodeproject.org/files/ENCFF801XTY/@@download/ENCFF801XTY.bigWig mm10 released low read length ENCFF187VUY bigWig signal p-value ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF247SZV, ENCFF339ZWC, ENCFF717CZQ 233080455 ENCODE Processing Pipeline 97abd9ffe74b994683266535fe68e4b8 https://www.encodeproject.org/files/ENCFF187VUY/@@download/ENCFF187VUY.bigWig mm10 released low read length ENCFF209RCH bigWig fold change over control ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF247SZV, ENCFF339ZWC 419287710 ENCODE Processing Pipeline 77a0c864a43360273cb2abed88e1067d https://www.encodeproject.org/files/ENCFF209RCH/@@download/ENCFF209RCH.bigWig mm10 released low read length ENCFF220TVD bigWig fold change over control ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF717CZQ 362277057 ENCODE Processing Pipeline faf544f740be13b865a910f7eec4a460 https://www.encodeproject.org/files/ENCFF220TVD/@@download/ENCFF220TVD.bigWig mm10 released low read length ENCFF140YUU bigWig fold change over control ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF247SZV, ENCFF339ZWC, ENCFF717CZQ 674209254 ENCODE Processing Pipeline 5cf6607bbcc44d0345a75176c27feede https://www.encodeproject.org/files/ENCFF140YUU/@@download/ENCFF140YUU.bigWig mm10 released low read length ENCFF560XGM bed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF247SZV, ENCFF339ZWC 5637942 ENCODE Processing Pipeline 0caca04aab1c9d00fa0b7bd64c514e85 https://www.encodeproject.org/files/ENCFF560XGM/@@download/ENCFF560XGM.bed.gz mm10 released low read length ENCFF293RPG bed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF247SZV, ENCFF339ZWC, ENCFF717CZQ 6296226 ENCODE Processing Pipeline 78bee2d282e629d731a8bacb90e07f81 https://www.encodeproject.org/files/ENCFF293RPG/@@download/ENCFF293RPG.bed.gz mm10 released low read length ENCFF887HXT bed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF717CZQ 5651473 ENCODE Processing Pipeline a69d1b036d6c26af5fa03dbdedc957cc https://www.encodeproject.org/files/ENCFF887HXT/@@download/ENCFF887HXT.bed.gz mm10 released low read length ENCFF090RVD bigBed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF560XGM 12949603 ENCODE Processing Pipeline 910468051fbaecdf6d5d94551189920e https://www.encodeproject.org/files/ENCFF090RVD/@@download/ENCFF090RVD.bigBed mm10 released low read length ENCFF502IRP bigBed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF887HXT 12983481 ENCODE Processing Pipeline 5420128e796688ab9c3b7a7250600541 https://www.encodeproject.org/files/ENCFF502IRP/@@download/ENCFF502IRP.bigBed mm10 released low read length ENCFF003TXQ bigBed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293RPG 12916621 ENCODE Processing Pipeline e64845bda97229c8c5f9aee844d19ff9 https://www.encodeproject.org/files/ENCFF003TXQ/@@download/ENCFF003TXQ.bigBed mm10 released low read length ENCFF514QFN bed narrowPeak conservative idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293RPG, ENCFF547MET, ENCFF560XGM, ENCFF887HXT 620056 ENCODE Processing Pipeline 3608d791a898c938e1d95928e23758ce https://www.encodeproject.org/files/ENCFF514QFN/@@download/ENCFF514QFN.bed.gz mm10 released low read length ENCFF117PYK bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF514QFN 1113673 ENCODE Processing Pipeline e20cb418d20bf5d0b1a8d37a200f05f0 https://www.encodeproject.org/files/ENCFF117PYK/@@download/ENCFF117PYK.bigBed mm10 released low read length ENCFF772DPT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF751UTU 1167967 ENCODE Processing Pipeline 836ecf50f8219ca4675a4f5bf6a11370 https://www.encodeproject.org/files/ENCFF772DPT/@@download/ENCFF772DPT.bigBed mm10 released low read length ENCFF751UTU bed narrowPeak optimal idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293RPG, ENCFF547MET, ENCFF560XGM, ENCFF887HXT 656135 ENCODE Processing Pipeline b13da342359a3858d46027fd5e9fb4f4 https://www.encodeproject.org/files/ENCFF751UTU/@@download/ENCFF751UTU.bed.gz mm10 released low read length ENCFF001NSV bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NTA 412428037 Michael Snyder, Stanford be7ffc473943e92d4a20a228c6836d04 https://www.encodeproject.org/files/ENCFF001NSV/@@download/ENCFF001NSV.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSW bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NSY 443580365 Michael Snyder, Stanford 95170dbe16cb49a9a7e5159d2e541b2d https://www.encodeproject.org/files/ENCFF001NSW/@@download/ENCFF001NSW.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSX bigBed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJO 502980 Michael Snyder, Stanford 2f2b8e875fa90c6ea7f4c43aaaba3a59 https://www.encodeproject.org/files/ENCFF001NSX/@@download/ENCFF001NSX.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NSY fastq reads ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 951578211 Michael Snyder, Stanford 5129e371c769e215603a22dc5163c872 https://www.encodeproject.org/files/ENCFF001NSY/@@download/ENCFF001NSY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NTA fastq reads ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 821495820 Michael Snyder, Stanford a502c40f85516a4323ca84efb45c511e https://www.encodeproject.org/files/ENCFF001NTA/@@download/ENCFF001NTA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NTC bigWig signal ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSV, ENCFF001NSW 137814096 Michael Snyder, Stanford c4152e5af18e2f8e82dd8d94b3d08cba https://www.encodeproject.org/files/ENCFF001NTC/@@download/ENCFF001NTC.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YJO bed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSV, ENCFF001NSW 186311 Michael Snyder, Stanford 96bf10e84344b9d4a5ba62a5499befa7 https://www.encodeproject.org/files/ENCFF001YJO/@@download/ENCFF001YJO.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF658UAY bam unfiltered alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSY, ENCFF018NEO 979375089 ENCODE Processing Pipeline 26554a09e9a3a8e41b84fd499efc8fd9 https://www.encodeproject.org/files/ENCFF658UAY/@@download/ENCFF658UAY.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF648UEX bam unfiltered alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NTA, ENCFF018NEO 843677946 ENCODE Processing Pipeline 3ee52332a9a11246f72da5a27b082765 https://www.encodeproject.org/files/ENCFF648UEX/@@download/ENCFF648UEX.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF722FAV bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSY, ENCFF018NEO 570868881 ENCODE Processing Pipeline a3ac9cedddc1e7126c088890f1303c84 https://www.encodeproject.org/files/ENCFF722FAV/@@download/ENCFF722FAV.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF947LVT bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NTA, ENCFF018NEO 537885845 ENCODE Processing Pipeline 43e6c5d5e4eed3765cb73caa47e5d739 https://www.encodeproject.org/files/ENCFF947LVT/@@download/ENCFF947LVT.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF235QZV bigWig fold change over control ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF947LVT 244107479 ENCODE Processing Pipeline 169dd3988bb5fa39a40f89ce9c119154 https://www.encodeproject.org/files/ENCFF235QZV/@@download/ENCFF235QZV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF793LKL bed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF722FAV, ENCFF947LVT 6059948 ENCODE Processing Pipeline 21c3314f398d772c4a2f6115559a946b https://www.encodeproject.org/files/ENCFF793LKL/@@download/ENCFF793LKL.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF073LCC bigBed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF323ECU 12748778 ENCODE Processing Pipeline 5dcefa49b96c11bc908d30b709f99238 https://www.encodeproject.org/files/ENCFF073LCC/@@download/ENCFF073LCC.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF625UEM bed narrowPeak optimal idr thresholded peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF323ECU, ENCFF547MET, ENCFF793LKL, ENCFF882JUL 451440 ENCODE Processing Pipeline f1a3a535f1a1fec18eeda82f3f3d64e5 https://www.encodeproject.org/files/ENCFF625UEM/@@download/ENCFF625UEM.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF823ZAI bigWig fold change over control ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF722FAV 253167590 ENCODE Processing Pipeline 9015d6605a88b01b4603c49c068912ee https://www.encodeproject.org/files/ENCFF823ZAI/@@download/ENCFF823ZAI.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF707FPY bigWig fold change over control ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF722FAV, ENCFF947LVT 424901566 ENCODE Processing Pipeline 346197b50434633b643fdf3152240fe3 https://www.encodeproject.org/files/ENCFF707FPY/@@download/ENCFF707FPY.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF882JUL bed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF947LVT 5476111 ENCODE Processing Pipeline 9255a68e2e543f5c40c6dcdf9285c187 https://www.encodeproject.org/files/ENCFF882JUL/@@download/ENCFF882JUL.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF752GIY bigBed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF793LKL 12955976 ENCODE Processing Pipeline 8b97ddecd571f0c16ca7bf1369a8fe2c https://www.encodeproject.org/files/ENCFF752GIY/@@download/ENCFF752GIY.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF658HKK bigWig signal p-value ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF722FAV, ENCFF947LVT 339691455 ENCODE Processing Pipeline dc0b64d3680bc732e227efaac4865606 https://www.encodeproject.org/files/ENCFF658HKK/@@download/ENCFF658HKK.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF710HJW bigBed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF882JUL 12709200 ENCODE Processing Pipeline ee377cd9dc1c749b5b4c6a9984c485a4 https://www.encodeproject.org/files/ENCFF710HJW/@@download/ENCFF710HJW.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF049DRT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF625UEM 1064776 ENCODE Processing Pipeline 8a4c150cfa060542d2dcdd4ef3d2ff7b https://www.encodeproject.org/files/ENCFF049DRT/@@download/ENCFF049DRT.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF493HEV bigWig signal p-value ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF722FAV 269626593 ENCODE Processing Pipeline 1a284eac96ab486527a962cc27fc4647 https://www.encodeproject.org/files/ENCFF493HEV/@@download/ENCFF493HEV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF782GNE bigWig signal p-value ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF947LVT 227242658 ENCODE Processing Pipeline 3375cb801eb58a391a718dcd0056d8b7 https://www.encodeproject.org/files/ENCFF782GNE/@@download/ENCFF782GNE.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF323ECU bed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF722FAV 5292389 ENCODE Processing Pipeline 648c23af489c9cc61a319a6b64c989ce https://www.encodeproject.org/files/ENCFF323ECU/@@download/ENCFF323ECU.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NWH bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NXB 431195516 Michael Snyder, Stanford b2522631eee5acfa72755666b569edb5 https://www.encodeproject.org/files/ENCFF001NWH/@@download/ENCFF001NWH.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NWI bigBed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YJV 597079 Michael Snyder, Stanford 6057a992b7f88536a30552ec16d1d388 https://www.encodeproject.org/files/ENCFF001NWI/@@download/ENCFF001NWI.bigBed mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NWJ bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NXD 442914659 Michael Snyder, Stanford ccb8f5062879b755694dd04da89ab849 https://www.encodeproject.org/files/ENCFF001NWJ/@@download/ENCFF001NWJ.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NWL bigWig signal ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NWH, ENCFF001NWJ 332071596 Michael Snyder, Stanford 2daa2fd113365e4d750ba3f44a5cd14f https://www.encodeproject.org/files/ENCFF001NWL/@@download/ENCFF001NWL.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NXB fastq reads ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 856055810 Michael Snyder, Stanford 9551e07b32b081e6abb072e428d751ee https://www.encodeproject.org/files/ENCFF001NXB/@@download/ENCFF001NXB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001NXD fastq reads ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 932606529 Michael Snyder, Stanford e5a95b93924e21317079cfae7d5dc437 https://www.encodeproject.org/files/ENCFF001NXD/@@download/ENCFF001NXD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001YJV bed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NWH, ENCFF001NWJ 224064 Michael Snyder, Stanford 613b26969752baa69877831961989f03 https://www.encodeproject.org/files/ENCFF001YJV/@@download/ENCFF001YJV.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF513DOZ bam unfiltered alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NXB, ENCFF018NEO 1016740949 ENCODE Processing Pipeline 98751ad70b2447043c81c2d0af607478 https://www.encodeproject.org/files/ENCFF513DOZ/@@download/ENCFF513DOZ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF810ZMH bam unfiltered alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NXD, ENCFF018NEO 1100232396 ENCODE Processing Pipeline 65cfbbb83200f9eec2574a8804a22cd3 https://www.encodeproject.org/files/ENCFF810ZMH/@@download/ENCFF810ZMH.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF468ABY bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NXB, ENCFF018NEO 657483071 ENCODE Processing Pipeline c1a89b3306e8f3b9fdeccc940df7ccbe https://www.encodeproject.org/files/ENCFF468ABY/@@download/ENCFF468ABY.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF763EMQ bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NXD, ENCFF018NEO 699656272 ENCODE Processing Pipeline d34ed154a78f32a114e58bbebbe0fc41 https://www.encodeproject.org/files/ENCFF763EMQ/@@download/ENCFF763EMQ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF280LIZ bigWig signal p-value ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF468ABY, ENCFF763EMQ 309755333 ENCODE Processing Pipeline 4ced4f85def4b3113ad5d49ea201f9d7 https://www.encodeproject.org/files/ENCFF280LIZ/@@download/ENCFF280LIZ.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF179HMP bed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF763EMQ 5356886 ENCODE Processing Pipeline eec962e44fb48fa735bbfd26bcc65f75 https://www.encodeproject.org/files/ENCFF179HMP/@@download/ENCFF179HMP.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF852CSV bigWig signal p-value ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF763EMQ 330345616 ENCODE Processing Pipeline 5400e0d42613915d261c8a735535ef4a https://www.encodeproject.org/files/ENCFF852CSV/@@download/ENCFF852CSV.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF382GMD bigBed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF188WWN 13003530 ENCODE Processing Pipeline 16be3ec5489a89d1df99baafcb05e7c4 https://www.encodeproject.org/files/ENCFF382GMD/@@download/ENCFF382GMD.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF897WMP bigBed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF179HMP 12862289 ENCODE Processing Pipeline a9e4d970bf737dd9391635d6bb2afc2b https://www.encodeproject.org/files/ENCFF897WMP/@@download/ENCFF897WMP.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF092ZHD bed narrowPeak conservative idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF166NPN, ENCFF179HMP, ENCFF188WWN, ENCFF547MET 410119 ENCODE Processing Pipeline 6c78c296b3500df32fbc6f9ba669a91f https://www.encodeproject.org/files/ENCFF092ZHD/@@download/ENCFF092ZHD.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF987CNG bed narrowPeak optimal idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF166NPN, ENCFF179HMP, ENCFF188WWN, ENCFF547MET 429279 ENCODE Processing Pipeline f62afc84822e9410855ed49187653559 https://www.encodeproject.org/files/ENCFF987CNG/@@download/ENCFF987CNG.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF199UPW bigWig fold change over control ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF468ABY 288323993 ENCODE Processing Pipeline 75dbc217548eee31e1ab2a5beda701e7 https://www.encodeproject.org/files/ENCFF199UPW/@@download/ENCFF199UPW.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF060EGQ bigWig fold change over control ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF468ABY, ENCFF763EMQ 511182620 ENCODE Processing Pipeline e56a1f081974fe59b0bca1853f3c3ad4 https://www.encodeproject.org/files/ENCFF060EGQ/@@download/ENCFF060EGQ.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF057JVS bigWig fold change over control ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF763EMQ 318403563 ENCODE Processing Pipeline 15b32bcfc7d9e99471ea6d2603e8f89c https://www.encodeproject.org/files/ENCFF057JVS/@@download/ENCFF057JVS.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF715FYC bigWig signal p-value ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF468ABY 310000141 ENCODE Processing Pipeline 56f85d2b3a3f8442ff380f3e2495b965 https://www.encodeproject.org/files/ENCFF715FYC/@@download/ENCFF715FYC.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF644DDI bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF092ZHD 945460 ENCODE Processing Pipeline bb73cb5c819ac8a3d91f4c2555f15642 https://www.encodeproject.org/files/ENCFF644DDI/@@download/ENCFF644DDI.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF188WWN bed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF468ABY 5310690 ENCODE Processing Pipeline f7e2e034dfb41a51500377f349b132e5 https://www.encodeproject.org/files/ENCFF188WWN/@@download/ENCFF188WWN.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF166NPN bed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF468ABY, ENCFF763EMQ 5894964 ENCODE Processing Pipeline 8e26d1535df1ab05578ddbf2338fc877 https://www.encodeproject.org/files/ENCFF166NPN/@@download/ENCFF166NPN.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF114QPJ bigBed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF166NPN 13027462 ENCODE Processing Pipeline 56c571f2548c1a7e116a31dfb36c7273 https://www.encodeproject.org/files/ENCFF114QPJ/@@download/ENCFF114QPJ.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF145MVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF987CNG 978267 ENCODE Processing Pipeline 7c3c01877445c89c86443d92084ca5c2 https://www.encodeproject.org/files/ENCFF145MVS/@@download/ENCFF145MVS.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001LOR bigBed broadPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAS 827162 Bing Ren, UCSD 125153bdccabc92198f527c53bfce061 https://www.encodeproject.org/files/ENCFF001LOR/@@download/ENCFF001LOR.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LOS bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPA 1703423943 Bing Ren, UCSD 0f85e2d8bd20ca86df9414e97da5a9de https://www.encodeproject.org/files/ENCFF001LOS/@@download/ENCFF001LOS.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LOT bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPK 2832777198 Bing Ren, UCSD 667290327ab20013e507ae5d826f2c75 https://www.encodeproject.org/files/ENCFF001LOT/@@download/ENCFF001LOT.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LOU bigWig signal ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LOS, ENCFF001LOT 47358322 Bing Ren, UCSD bf15bc7f3cb04f867e1c284831dd4f0d https://www.encodeproject.org/files/ENCFF001LOU/@@download/ENCFF001LOU.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LPA fastq reads ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 1857750780 Bing Ren, UCSD 9f7a9bc43db2b961e81c7af0afc1e11c https://www.encodeproject.org/files/ENCFF001LPA/@@download/ENCFF001LPA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LPK fastq reads ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 3206007745 Bing Ren, UCSD 253f106c88a5b76658f4546a242089f7 https://www.encodeproject.org/files/ENCFF001LPK/@@download/ENCFF001LPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF001YAS bed broadPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LOS, ENCFF001LOT 516803 Bing Ren, UCSD a51aff79e8f840f4ee6854e0f51d412c https://www.encodeproject.org/files/ENCFF001YAS/@@download/ENCFF001YAS.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF958NLD bam unfiltered alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 2851545952 ENCODE Processing Pipeline d569a046506fad0fe0a990c4ddd50b42 https://www.encodeproject.org/files/ENCFF958NLD/@@download/ENCFF958NLD.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF081UJZ bam unfiltered alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 1738352194 ENCODE Processing Pipeline 4da5edd3f6578becece088640e2b8eca https://www.encodeproject.org/files/ENCFF081UJZ/@@download/ENCFF081UJZ.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF790KRK bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 254614431 ENCODE Processing Pipeline e1ec01bb207eb33d693da82e2890c587 https://www.encodeproject.org/files/ENCFF790KRK/@@download/ENCFF790KRK.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF150WRV bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 250266703 ENCODE Processing Pipeline 7dcffb4a6f8c061558dc42a1b97cec12 https://www.encodeproject.org/files/ENCFF150WRV/@@download/ENCFF150WRV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF836MWU bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 138900158 ENCODE Processing Pipeline 53ff8d918a036e9fd31325ba0d0a9af6 https://www.encodeproject.org/files/ENCFF836MWU/@@download/ENCFF836MWU.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF871BPC bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 188701432 ENCODE Processing Pipeline 5f4be9b23af4116e6eaffa52b7d89818 https://www.encodeproject.org/files/ENCFF871BPC/@@download/ENCFF871BPC.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF387HCI bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 82458462 ENCODE Processing Pipeline 7541632443b7e81c0609be178ac5b385 https://www.encodeproject.org/files/ENCFF387HCI/@@download/ENCFF387HCI.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF771PZS bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 179358966 ENCODE Processing Pipeline 76fce67d443ba8361d3890c51c6ab2ac https://www.encodeproject.org/files/ENCFF771PZS/@@download/ENCFF771PZS.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF168IVP bed narrowPeak optimal idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF041ZCF, ENCFF547MET, ENCFF641UWK, ENCFF953YSC 571353 ENCODE Processing Pipeline 857d97eb1970552f17bdab0069091f90 https://www.encodeproject.org/files/ENCFF168IVP/@@download/ENCFF168IVP.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF863SNW bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 87996261 ENCODE Processing Pipeline 92a02ccd88c14b0a2f8d54e2346156bf https://www.encodeproject.org/files/ENCFF863SNW/@@download/ENCFF863SNW.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF953YSC bed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 1901306 ENCODE Processing Pipeline 5f38e5068e9ef3b20da10e25ac9d6183 https://www.encodeproject.org/files/ENCFF953YSC/@@download/ENCFF953YSC.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF029VYE bigBed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF953YSC 4140535 ENCODE Processing Pipeline e7e1a7be264494e7b01d0bedc3c6bbf2 https://www.encodeproject.org/files/ENCFF029VYE/@@download/ENCFF029VYE.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF100ZBW bed narrowPeak conservative idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF041ZCF, ENCFF547MET, ENCFF641UWK, ENCFF953YSC 526137 ENCODE Processing Pipeline a0a618bb7ad785e78943ed014d1f5a01 https://www.encodeproject.org/files/ENCFF100ZBW/@@download/ENCFF100ZBW.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF534YTF bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 256373379 ENCODE Processing Pipeline 1bc33b7e590b1100b76a49ab459717c3 https://www.encodeproject.org/files/ENCFF534YTF/@@download/ENCFF534YTF.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF596OZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF168IVP 1089581 ENCODE Processing Pipeline adbb7b95bb838a817f84da8cd631293c https://www.encodeproject.org/files/ENCFF596OZR/@@download/ENCFF596OZR.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF041ZCF bed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 1840948 ENCODE Processing Pipeline cfe7b7876434783be24e9b342efe728e https://www.encodeproject.org/files/ENCFF041ZCF/@@download/ENCFF041ZCF.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF641UWK bed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 4037815 ENCODE Processing Pipeline f11bb2e16ac318765cb8345f33e98e2e https://www.encodeproject.org/files/ENCFF641UWK/@@download/ENCFF641UWK.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF473DLH bigBed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF041ZCF 4064541 ENCODE Processing Pipeline c048f845c482d025a41d48d44664f00a https://www.encodeproject.org/files/ENCFF473DLH/@@download/ENCFF473DLH.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF829ESA bigBed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF641UWK 8148303 ENCODE Processing Pipeline 153795c624fac4c867cd723a0d89900f https://www.encodeproject.org/files/ENCFF829ESA/@@download/ENCFF829ESA.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF594YKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF100ZBW 1019456 ENCODE Processing Pipeline 926a11bf60164542bc92bfc845c246c9 https://www.encodeproject.org/files/ENCFF594YKN/@@download/ENCFF594YKN.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity ENCFF160DPX fastq reads ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1098463981 Richard Myers, HAIB 465832429aad4619bda4baefaeead1b2 SRA:SRR5112343 https://www.encodeproject.org/files/ENCFF160DPX/@@download/ENCFF160DPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF494VBT/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF323QPQ fastq reads ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1638750335 Richard Myers, HAIB 5ef3412bf50e7d9040bd560abd09f431 SRA:SRR5112342 https://www.encodeproject.org/files/ENCFF323QPQ/@@download/ENCFF323QPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF494VBT/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF721EAL bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF160DPX, ENCFF806TVZ 818881245 ENCODE Processing Pipeline 736682ece8427aa237d4736c40830b58 https://www.encodeproject.org/files/ENCFF721EAL/@@download/ENCFF721EAL.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF431QXA bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF323QPQ, ENCFF806TVZ 1145204991 ENCODE Processing Pipeline d3d7fc93d4a43ebf96ec19ab366d5aa0 https://www.encodeproject.org/files/ENCFF431QXA/@@download/ENCFF431QXA.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF900BCK bam unfiltered alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 1105735412 ENCODE Processing Pipeline c15ff0e17937baa9033c624b9544d707 https://www.encodeproject.org/files/ENCFF900BCK/@@download/ENCFF900BCK.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF164BCI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1145124183 ENCODE Processing Pipeline 1e9280a53f99f767bd2c49c49d0a6432 https://www.encodeproject.org/files/ENCFF164BCI/@@download/ENCFF164BCI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF820ADI bam unfiltered alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1644570384 ENCODE Processing Pipeline 50689c6cf19c988609332a96cafd3507 https://www.encodeproject.org/files/ENCFF820ADI/@@download/ENCFF820ADI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF262NGI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 818813553 ENCODE Processing Pipeline bd23e3d0832e0da66339261d251459ee https://www.encodeproject.org/files/ENCFF262NGI/@@download/ENCFF262NGI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF207OHJ bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 383789164 ENCODE Processing Pipeline 019ef069f9e499a49e4af13933b24f0d https://www.encodeproject.org/files/ENCFF207OHJ/@@download/ENCFF207OHJ.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF433ZAW bed narrowPeak conservative idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039DHV, ENCFF169BDL, ENCFF547MET, ENCFF726SOK 1036085 ENCODE Processing Pipeline 28e3c64303b8e7e448aa0e2a9e435783 https://www.encodeproject.org/files/ENCFF433ZAW/@@download/ENCFF433ZAW.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF057GJF bed narrowPeak optimal idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039DHV, ENCFF169BDL, ENCFF547MET, ENCFF726SOK 1083288 ENCODE Processing Pipeline 4d47e1a1b466b510769fd75fbead8492 https://www.encodeproject.org/files/ENCFF057GJF/@@download/ENCFF057GJF.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF163KJU bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 618540015 ENCODE Processing Pipeline a41b4c054e95946a4b7f5ef116f92c53 https://www.encodeproject.org/files/ENCFF163KJU/@@download/ENCFF163KJU.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF699FQY bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 507008471 ENCODE Processing Pipeline d833f0ba51fb35710bca6c902852f70b https://www.encodeproject.org/files/ENCFF699FQY/@@download/ENCFF699FQY.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF818BGB bigBed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF169BDL 11241482 ENCODE Processing Pipeline f7ed4a2d2f99bec9cfb6da875d6f8630 https://www.encodeproject.org/files/ENCFF818BGB/@@download/ENCFF818BGB.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF562MDY bigBed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF039DHV 11188447 ENCODE Processing Pipeline dbbf2654348a7266055408a9fcd6e000 https://www.encodeproject.org/files/ENCFF562MDY/@@download/ENCFF562MDY.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF854MNX bigBed narrowPeak conservative idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF433ZAW 1610432 ENCODE Processing Pipeline 10469ef94481c703d572da10780a94ea https://www.encodeproject.org/files/ENCFF854MNX/@@download/ENCFF854MNX.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF113BDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF057GJF 2143739 ENCODE Processing Pipeline 8e8293953748feb401808499b7806f4e https://www.encodeproject.org/files/ENCFF113BDJ/@@download/ENCFF113BDJ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF309UUX bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 579601515 ENCODE Processing Pipeline 2736c09e01205752f85b819b2a501fb5 https://www.encodeproject.org/files/ENCFF309UUX/@@download/ENCFF309UUX.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF169BDL bed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 5489873 ENCODE Processing Pipeline 26271235fb0bf14240483f5b3023dd70 https://www.encodeproject.org/files/ENCFF169BDL/@@download/ENCFF169BDL.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF726SOK bed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 6089229 ENCODE Processing Pipeline 4da5bd1179a7707dd80be3179d35d448 https://www.encodeproject.org/files/ENCFF726SOK/@@download/ENCFF726SOK.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF844FZQ bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 529893748 ENCODE Processing Pipeline 5affc0e4037832229ed3a7db4852c1b2 https://www.encodeproject.org/files/ENCFF844FZQ/@@download/ENCFF844FZQ.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF581XWU bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 746046497 ENCODE Processing Pipeline 6b533e2b6d553496fdf025377c97500d https://www.encodeproject.org/files/ENCFF581XWU/@@download/ENCFF581XWU.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF039DHV bed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 5268750 ENCODE Processing Pipeline 53b714363c6e4bba3e1019bb99f87003 https://www.encodeproject.org/files/ENCFF039DHV/@@download/ENCFF039DHV.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF973JHQ bigBed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF726SOK 11297008 ENCODE Processing Pipeline 4ecb8ad1c4e2194b1c7618f7e399421e https://www.encodeproject.org/files/ENCFF973JHQ/@@download/ENCFF973JHQ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001NMF bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NMH 493207554 Michael Snyder, Stanford d47a3f3c7331bad6f43f86123c740242 https://www.encodeproject.org/files/ENCFF001NMF/@@download/ENCFF001NMF.bam mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001NMG bigBed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YIS 319146 Michael Snyder, Stanford 2050682bc96ce5bfcb88088c5bc68909 https://www.encodeproject.org/files/ENCFF001NMG/@@download/ENCFF001NMG.bigBed mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001NMH fastq reads ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 942945902 Michael Snyder, Stanford f9ef097048d11fb47b7092b68f0fa3fa https://www.encodeproject.org/files/ENCFF001NMH/@@download/ENCFF001NMH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001NMJ fastq reads ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 837366140 Michael Snyder, Stanford 6fd3c1a97f67a76cd7a242ff5a368375 https://www.encodeproject.org/files/ENCFF001NMJ/@@download/ENCFF001NMJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001NML bigWig signal ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NMF, ENCFF001NMM 156584855 Michael Snyder, Stanford a3a1244ff11200bf9310b23e5106068d https://www.encodeproject.org/files/ENCFF001NML/@@download/ENCFF001NML.bigWig mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001NMM bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NMJ 454393823 Michael Snyder, Stanford d24d390eedbb2d2cbf44bd1fd3952f8a https://www.encodeproject.org/files/ENCFF001NMM/@@download/ENCFF001NMM.bam mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001YIS bed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NMF, ENCFF001NMM 131058 Michael Snyder, Stanford 9927430ebe79693f704c28f129a60df7 https://www.encodeproject.org/files/ENCFF001YIS/@@download/ENCFF001YIS.bed.gz mm9 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF979JBP bam unfiltered alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NMJ, ENCFF018NEO 920500470 ENCODE Processing Pipeline 0f805c07b15d68370c3dd2ec2fb1e8a1 https://www.encodeproject.org/files/ENCFF979JBP/@@download/ENCFF979JBP.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF140LPA bam unfiltered alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NMH, ENCFF018NEO 1041726052 ENCODE Processing Pipeline e90468304f3d8a7053a95971ad133d57 https://www.encodeproject.org/files/ENCFF140LPA/@@download/ENCFF140LPA.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF482OKL bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NMJ, ENCFF018NEO 626157010 ENCODE Processing Pipeline 368823dda68040e51560f087cb0bd8aa https://www.encodeproject.org/files/ENCFF482OKL/@@download/ENCFF482OKL.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF700OOX bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NMH, ENCFF018NEO 693314323 ENCODE Processing Pipeline da950b7a3e3aaff8a0d2aba01c5b1356 https://www.encodeproject.org/files/ENCFF700OOX/@@download/ENCFF700OOX.bam mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF080LEX bigWig signal p-value ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF482OKL 226892136 ENCODE Processing Pipeline efbe405842febb2c99cdd9ce3e84f145 https://www.encodeproject.org/files/ENCFF080LEX/@@download/ENCFF080LEX.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF652IYI bigWig signal p-value ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF700OOX 234778111 ENCODE Processing Pipeline 97bf8e855ef18bbcbbcdb6af679a1ccd https://www.encodeproject.org/files/ENCFF652IYI/@@download/ENCFF652IYI.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF717ITH bigWig fold change over control ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF482OKL 262480749 ENCODE Processing Pipeline edb557ec7a92f467d39ba5a449aa69c4 https://www.encodeproject.org/files/ENCFF717ITH/@@download/ENCFF717ITH.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF121UFB bigWig signal p-value ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF482OKL, ENCFF700OOX 215137572 ENCODE Processing Pipeline e73d36fb9b514d1925bf46500003c883 https://www.encodeproject.org/files/ENCFF121UFB/@@download/ENCFF121UFB.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF494JDF bigWig fold change over control ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF700OOX 285550173 ENCODE Processing Pipeline 24dc6789b9c5562587ff3a2765a18c24 https://www.encodeproject.org/files/ENCFF494JDF/@@download/ENCFF494JDF.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF270QCB bed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF700OOX 940014 ENCODE Processing Pipeline 3246ace6cc24398181d71ddb2096bda3 https://www.encodeproject.org/files/ENCFF270QCB/@@download/ENCFF270QCB.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF077OGZ bed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF482OKL, ENCFF700OOX 5400807 ENCODE Processing Pipeline aec09d12b86d494a58d7fa9db8bcbca8 https://www.encodeproject.org/files/ENCFF077OGZ/@@download/ENCFF077OGZ.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF411YYG bigWig fold change over control ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF482OKL, ENCFF700OOX 471881101 ENCODE Processing Pipeline 80058253ac9ed94f4ac30cadfbd8157e https://www.encodeproject.org/files/ENCFF411YYG/@@download/ENCFF411YYG.bigWig mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF696QMG bigBed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF270QCB 2126869 ENCODE Processing Pipeline 6f365459fb61aa452bcfdb31e5d2f32b https://www.encodeproject.org/files/ENCFF696QMG/@@download/ENCFF696QMG.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF847IJD bigBed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF474CML 425155 ENCODE Processing Pipeline 13a7db04bd165eb0183e089055c28c1b https://www.encodeproject.org/files/ENCFF847IJD/@@download/ENCFF847IJD.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF135YRM bigBed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF077OGZ 12921922 ENCODE Processing Pipeline ff0a5313751560779653b7b6445a960f https://www.encodeproject.org/files/ENCFF135YRM/@@download/ENCFF135YRM.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF474CML bed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF482OKL 160727 ENCODE Processing Pipeline e5a0e063c77b7eb9b27a1ad32019da17 https://www.encodeproject.org/files/ENCFF474CML/@@download/ENCFF474CML.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF973JIT bed narrowPeak conservative idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF077OGZ, ENCFF270QCB, ENCFF474CML, ENCFF547MET 31166 ENCODE Processing Pipeline 54a7e0126173772b2d9291ba1dab6dbe https://www.encodeproject.org/files/ENCFF973JIT/@@download/ENCFF973JIT.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF035UVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF501HSN 127889 ENCODE Processing Pipeline 0a91737feec12264fe643bf480bc6f23 https://www.encodeproject.org/files/ENCFF035UVH/@@download/ENCFF035UVH.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF501HSN bed narrowPeak optimal idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF077OGZ, ENCFF270QCB, ENCFF474CML, ENCFF547MET 44991 ENCODE Processing Pipeline 01b18e76103506fd84182c77d437cbfa https://www.encodeproject.org/files/ENCFF501HSN/@@download/ENCFF501HSN.bed.gz mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF414IBM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF973JIT 107330 ENCODE Processing Pipeline ab6fb486eb0a2aa03917c7c749c35208 https://www.encodeproject.org/files/ENCFF414IBM/@@download/ENCFF414IBM.bigBed mm10 released low read length, low read depth, borderline replicate concordance, inconsistent platforms ENCFF001NND bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NNG 229850826 Michael Snyder, Stanford a0cf6bfbe2c13de3f261d6d53886f678 https://www.encodeproject.org/files/ENCFF001NND/@@download/ENCFF001NND.bam mm9 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NNE bigBed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIV 506607 Michael Snyder, Stanford 262095175080bf2971334d73bc699153 https://www.encodeproject.org/files/ENCFF001NNE/@@download/ENCFF001NNE.bigBed mm9 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NNG fastq reads ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 474459622 Michael Snyder, Stanford 3a2ae71c45eea2001640ab6ede5ae898 https://www.encodeproject.org/files/ENCFF001NNG/@@download/ENCFF001NNG.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NNI fastq reads ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1487005124 Michael Snyder, Stanford 434ffaaaf9c36d6c101d3ddb92b5a7ef https://www.encodeproject.org/files/ENCFF001NNI/@@download/ENCFF001NNI.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NNK bigWig signal ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NND, ENCFF001NNL 149569899 Michael Snyder, Stanford b249ce84ff6e01cb569e62ebe733d194 https://www.encodeproject.org/files/ENCFF001NNK/@@download/ENCFF001NNK.bigWig mm9 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NNL bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NNI 655010276 Michael Snyder, Stanford 5ede08caf70664f3cd12bb444bce09d5 https://www.encodeproject.org/files/ENCFF001NNL/@@download/ENCFF001NNL.bam mm9 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001YIV bed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NND, ENCFF001NNL 209688 Michael Snyder, Stanford 3fa097e8da268063a6d2b4480b07bbc4 https://www.encodeproject.org/files/ENCFF001YIV/@@download/ENCFF001YIV.bed.gz mm9 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF437DRX bam unfiltered alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NNG, ENCFF018NEO 539089368 ENCODE Processing Pipeline 83092ed328fe148f8c075644c14b2ef9 https://www.encodeproject.org/files/ENCFF437DRX/@@download/ENCFF437DRX.bam mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF365KSO bam unfiltered alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNI, ENCFF018NEO 1593718162 ENCODE Processing Pipeline 0a3bea68f50350197fcb4070bc1c8583 https://www.encodeproject.org/files/ENCFF365KSO/@@download/ENCFF365KSO.bam mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF724VSZ bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NNG, ENCFF018NEO 330227818 ENCODE Processing Pipeline 3f6221f057eab42d2496ef8b0a5467dc https://www.encodeproject.org/files/ENCFF724VSZ/@@download/ENCFF724VSZ.bam mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF226MZU bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNI, ENCFF018NEO 954118431 ENCODE Processing Pipeline 06e8d98901209aa8b5a1718e9214cdf4 https://www.encodeproject.org/files/ENCFF226MZU/@@download/ENCFF226MZU.bam mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF494VLZ bigWig signal p-value ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF724VSZ, ENCFF966YUS 369474855 ENCODE Processing Pipeline 854ab7885e9ddadc86f9e9694b45fead https://www.encodeproject.org/files/ENCFF494VLZ/@@download/ENCFF494VLZ.bigWig mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF789SVB bigWig signal p-value ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF226MZU, ENCFF966YUS 511161491 ENCODE Processing Pipeline bae5f8a5cb4d2a3f0a7e3021450d0722 https://www.encodeproject.org/files/ENCFF789SVB/@@download/ENCFF789SVB.bigWig mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF932DRA bigWig signal p-value ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF226MZU, ENCFF724VSZ, ENCFF966YUS 497946897 ENCODE Processing Pipeline df9076480241419cb81adbb5345bffd5 https://www.encodeproject.org/files/ENCFF932DRA/@@download/ENCFF932DRA.bigWig mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF220LMV bigWig fold change over control ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF724VSZ, ENCFF966YUS 197330836 ENCODE Processing Pipeline 0818f0cee4a57286efec420b54a73380 https://www.encodeproject.org/files/ENCFF220LMV/@@download/ENCFF220LMV.bigWig mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF375KEJ bigWig fold change over control ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF226MZU, ENCFF966YUS 467743918 ENCODE Processing Pipeline ebe05d12ee062deba0fb50a68b640351 https://www.encodeproject.org/files/ENCFF375KEJ/@@download/ENCFF375KEJ.bigWig mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF122FYP bigWig fold change over control ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF226MZU, ENCFF724VSZ, ENCFF966YUS 594745320 ENCODE Processing Pipeline 7984a47bbd9be3a1bb759b40d9cf042b https://www.encodeproject.org/files/ENCFF122FYP/@@download/ENCFF122FYP.bigWig mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF622XHL bed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF724VSZ, ENCFF966YUS 3391167 ENCODE Processing Pipeline 5685457e1b81f284768f251362f44c9f https://www.encodeproject.org/files/ENCFF622XHL/@@download/ENCFF622XHL.bed.gz mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF199OAD bed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF226MZU, ENCFF966YUS 5806231 ENCODE Processing Pipeline a27bc49f77c6b20f480fd3b713aa8aa6 https://www.encodeproject.org/files/ENCFF199OAD/@@download/ENCFF199OAD.bed.gz mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF843WHQ bigBed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF622XHL 7723703 ENCODE Processing Pipeline b27961c802cdf59a083b3f7483f0f6a1 https://www.encodeproject.org/files/ENCFF843WHQ/@@download/ENCFF843WHQ.bigBed mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF431QAW bed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF226MZU, ENCFF724VSZ, ENCFF966YUS 6001756 ENCODE Processing Pipeline a840501463c737d90c0a45ca40dd1365 https://www.encodeproject.org/files/ENCFF431QAW/@@download/ENCFF431QAW.bed.gz mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF017LKY bigBed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF199OAD 13257215 ENCODE Processing Pipeline 58af956f1551f15f35a4d32fb3348851 https://www.encodeproject.org/files/ENCFF017LKY/@@download/ENCFF017LKY.bigBed mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF502OMY bigBed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF431QAW 13330911 ENCODE Processing Pipeline 24e929efaa0ef705f925633ff3408056 https://www.encodeproject.org/files/ENCFF502OMY/@@download/ENCFF502OMY.bigBed mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF030DBG bed narrowPeak conservative idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF199OAD, ENCFF431QAW, ENCFF547MET, ENCFF622XHL 158477 ENCODE Processing Pipeline 98b1480e16e1e29955301dbf2cb7a120 https://www.encodeproject.org/files/ENCFF030DBG/@@download/ENCFF030DBG.bed.gz mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF722CPN bed narrowPeak optimal idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF199OAD, ENCFF431QAW, ENCFF547MET, ENCFF622XHL 207209 ENCODE Processing Pipeline 29ec5d4f84340fa8a01b6b9475a08ade https://www.encodeproject.org/files/ENCFF722CPN/@@download/ENCFF722CPN.bed.gz mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF467ZYZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF030DBG 346285 ENCODE Processing Pipeline bffd6f0c51bda2a807c448712490c157 https://www.encodeproject.org/files/ENCFF467ZYZ/@@download/ENCFF467ZYZ.bigBed mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF426BJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF722CPN 412495 ENCODE Processing Pipeline 311dde9738d6e2ccef63c450fabb91ac https://www.encodeproject.org/files/ENCFF426BJQ/@@download/ENCFF426BJQ.bigBed mm10 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NYT bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NZU 428534595 Michael Snyder, Stanford bbc6aefbe859e2dcfd586662c2c94c4c https://www.encodeproject.org/files/ENCFF001NYT/@@download/ENCFF001NYT.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYU bigBed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YKD 1919858 Michael Snyder, Stanford 479d779cfbf91117514e53474e8adb15 https://www.encodeproject.org/files/ENCFF001NYU/@@download/ENCFF001NYU.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYV bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NZS 384992633 Michael Snyder, Stanford eee68c1be782a21c903a65a4b79dc4c3 https://www.encodeproject.org/files/ENCFF001NYV/@@download/ENCFF001NYV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NYX bigWig signal ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NYT, ENCFF001NYV 302095275 Michael Snyder, Stanford 4dec4ade3d16e3da183af5f5e6d34296 https://www.encodeproject.org/files/ENCFF001NYX/@@download/ENCFF001NYX.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NZS fastq reads ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 835436347 Michael Snyder, Stanford 3523e3c27d01397e59a374369a256e48 https://www.encodeproject.org/files/ENCFF001NZS/@@download/ENCFF001NZS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NZU fastq reads ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 1048767076 Michael Snyder, Stanford dabb43efca28e1244177c31fcfa47aae https://www.encodeproject.org/files/ENCFF001NZU/@@download/ENCFF001NZU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001YKD bed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NYT, ENCFF001NYV 923934 Michael Snyder, Stanford 4adf980933c4b4f3d9129b689101673a https://www.encodeproject.org/files/ENCFF001YKD/@@download/ENCFF001YKD.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF446AUK bam unfiltered alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NZS, ENCFF018NEO 946691106 ENCODE Processing Pipeline 6fe0bf38c3e2b2783eb7202c47e1df1f https://www.encodeproject.org/files/ENCFF446AUK/@@download/ENCFF446AUK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF432CAL bam unfiltered alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NZU, ENCFF018NEO 1183518221 ENCODE Processing Pipeline b4d084779f40c73508849eb2b796976d https://www.encodeproject.org/files/ENCFF432CAL/@@download/ENCFF432CAL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF924UTR bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NZS, ENCFF018NEO 552183629 ENCODE Processing Pipeline 0ab1bb640a289d746bbd0f9a795a733a https://www.encodeproject.org/files/ENCFF924UTR/@@download/ENCFF924UTR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF403JXO bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NZU, ENCFF018NEO 695761121 ENCODE Processing Pipeline de03dbb7d45c4e1ea7191c1801b343c4 https://www.encodeproject.org/files/ENCFF403JXO/@@download/ENCFF403JXO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF521KZY bigWig fold change over control ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF924UTR 263460607 ENCODE Processing Pipeline fa070e9e5384d080f3986896515d1900 https://www.encodeproject.org/files/ENCFF521KZY/@@download/ENCFF521KZY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF198FKD bigWig fold change over control ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF403JXO, ENCFF924UTR 466471795 ENCODE Processing Pipeline 1b65864d7417b7bf57b9c0bf0432423f https://www.encodeproject.org/files/ENCFF198FKD/@@download/ENCFF198FKD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF862HJU bigWig signal p-value ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF403JXO 325807403 ENCODE Processing Pipeline afabab781beae98492f9bec82e3dd420 https://www.encodeproject.org/files/ENCFF862HJU/@@download/ENCFF862HJU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF256IES bed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF924UTR 4529202 ENCODE Processing Pipeline 67793c73e29f70ea9950f710c396c55c https://www.encodeproject.org/files/ENCFF256IES/@@download/ENCFF256IES.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF416UPJ bigWig signal p-value ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF924UTR 322216041 ENCODE Processing Pipeline 3aff2ff597047bb6ef4b59e0095130c9 https://www.encodeproject.org/files/ENCFF416UPJ/@@download/ENCFF416UPJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF461XMN bigWig signal p-value ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF403JXO, ENCFF924UTR 319688208 ENCODE Processing Pipeline 8a04d9cb663c9e9a19956d4a05ac2004 https://www.encodeproject.org/files/ENCFF461XMN/@@download/ENCFF461XMN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF073YNV bigWig fold change over control ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF403JXO 295368621 ENCODE Processing Pipeline c83d54779b9ec6fee3fbe8959e64ec0c https://www.encodeproject.org/files/ENCFF073YNV/@@download/ENCFF073YNV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF216GFV bed narrowPeak conservative idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF213KTF, ENCFF256IES, ENCFF426BMQ, ENCFF547MET 497778 ENCODE Processing Pipeline 3ae82c4d34fe7984cadd246a6c257c55 https://www.encodeproject.org/files/ENCFF216GFV/@@download/ENCFF216GFV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF213KTF bed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF403JXO, ENCFF924UTR 2448539 ENCODE Processing Pipeline 29fb5c93d92eec1b83bfd55f4aa5022c https://www.encodeproject.org/files/ENCFF213KTF/@@download/ENCFF213KTF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF877WYM bigBed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF256IES 10447877 ENCODE Processing Pipeline 99f42b7eb5e4838b2b69cab01b07d74f https://www.encodeproject.org/files/ENCFF877WYM/@@download/ENCFF877WYM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF426BMQ bed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF403JXO 4651431 ENCODE Processing Pipeline d63c1cb4bf163f7e82057d29abff7f60 https://www.encodeproject.org/files/ENCFF426BMQ/@@download/ENCFF426BMQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF808OSG bigBed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF426BMQ 10635809 ENCODE Processing Pipeline 9a93d14cf4e4cd4be6d1567b2313f384 https://www.encodeproject.org/files/ENCFF808OSG/@@download/ENCFF808OSG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF458IZV bigBed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF213KTF 5018455 ENCODE Processing Pipeline f9470216c2648f98a1bc4f86a0b9785c https://www.encodeproject.org/files/ENCFF458IZV/@@download/ENCFF458IZV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF991KPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF216GFV 953571 ENCODE Processing Pipeline ab30e5ae92cb5f3bfa98dae42d065a19 https://www.encodeproject.org/files/ENCFF991KPV/@@download/ENCFF991KPV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF021BHG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF946EZQ 1025322 ENCODE Processing Pipeline 6772255d26353674c0fbe85844ea83de https://www.encodeproject.org/files/ENCFF021BHG/@@download/ENCFF021BHG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF946EZQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF213KTF, ENCFF256IES, ENCFF426BMQ, ENCFF547MET 549585 ENCODE Processing Pipeline ea84c4721c69c7b5eb4e61e07f28cd9e https://www.encodeproject.org/files/ENCFF946EZQ/@@download/ENCFF946EZQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NFH bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NFT 291066742 Michael Snyder, Stanford c3652e94e499928ce5ef2cad8c9532a0 https://www.encodeproject.org/files/ENCFF001NFH/@@download/ENCFF001NFH.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001NFI bigBed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHT 802283 Michael Snyder, Stanford a58778bece173c1a6984f31f30aa45d0 https://www.encodeproject.org/files/ENCFF001NFI/@@download/ENCFF001NFI.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001NFJ bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NFQ 204448184 Michael Snyder, Stanford e72d68ea279da76e60b68c95c8ed4b76 https://www.encodeproject.org/files/ENCFF001NFJ/@@download/ENCFF001NFJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001NFK bigWig signal ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFH, ENCFF001NFJ 221424048 Michael Snyder, Stanford 815b0d8f70af97397e7028279da2fe6c https://www.encodeproject.org/files/ENCFF001NFK/@@download/ENCFF001NFK.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001NFQ fastq reads ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 814965430 Michael Snyder, Stanford f18f1f3e36fbb19e57e63f6ec8cf3632 https://www.encodeproject.org/files/ENCFF001NFQ/@@download/ENCFF001NFQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001NFT fastq reads ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1024069586 Michael Snyder, Stanford 586b219a6344a877d53cf71f2c4f6f2f https://www.encodeproject.org/files/ENCFF001NFT/@@download/ENCFF001NFT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001YHT bed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFH, ENCFF001NFJ 344945 Michael Snyder, Stanford 435423d851413016e9bf488c87164929 https://www.encodeproject.org/files/ENCFF001YHT/@@download/ENCFF001YHT.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF168MHD bam unfiltered alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFQ, ENCFF018NEO 906059713 ENCODE Processing Pipeline d0099a0b9b6316961a1e39bec07caf81 https://www.encodeproject.org/files/ENCFF168MHD/@@download/ENCFF168MHD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF606RGZ bam unfiltered alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFT, ENCFF018NEO 1133969821 ENCODE Processing Pipeline 4e259faa8d0251f17796d32956e7a704 https://www.encodeproject.org/files/ENCFF606RGZ/@@download/ENCFF606RGZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF669MCR bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFQ, ENCFF018NEO 459532369 ENCODE Processing Pipeline 599cb1a665e5f29c75507040d8af913e https://www.encodeproject.org/files/ENCFF669MCR/@@download/ENCFF669MCR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF518YCG bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFT, ENCFF018NEO 554384203 ENCODE Processing Pipeline b525a40bd24734b54db816d35a0c4d6f https://www.encodeproject.org/files/ENCFF518YCG/@@download/ENCFF518YCG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF947MIU bigWig signal p-value ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF518YCG 230192327 ENCODE Processing Pipeline d5bb0cb8e83f96f1e957263d7db4676c https://www.encodeproject.org/files/ENCFF947MIU/@@download/ENCFF947MIU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF788XRX bigWig signal p-value ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF669MCR 187728388 ENCODE Processing Pipeline f676b1c872803eebf57446e02a2f24ae https://www.encodeproject.org/files/ENCFF788XRX/@@download/ENCFF788XRX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF912BVT bigWig fold change over control ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF518YCG 205379508 ENCODE Processing Pipeline 6b893c56e077bf6cb1f8ede406cd95cb https://www.encodeproject.org/files/ENCFF912BVT/@@download/ENCFF912BVT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF954JPC bigWig signal p-value ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF518YCG, ENCFF669MCR 254902260 ENCODE Processing Pipeline dff62b7a75793d5769c8e6f3cd5e64bc https://www.encodeproject.org/files/ENCFF954JPC/@@download/ENCFF954JPC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF447ZHW bigWig fold change over control ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF669MCR 172124387 ENCODE Processing Pipeline f42bf25525c0683200ab9908101bbbd4 https://www.encodeproject.org/files/ENCFF447ZHW/@@download/ENCFF447ZHW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF944MUS bigWig fold change over control ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF518YCG, ENCFF669MCR 333089936 ENCODE Processing Pipeline cbb64a84764601001b3b1c2d86853728 https://www.encodeproject.org/files/ENCFF944MUS/@@download/ENCFF944MUS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF525UBB bed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF669MCR 3835648 ENCODE Processing Pipeline e9f93e26b4ac45879be578f2665142d8 https://www.encodeproject.org/files/ENCFF525UBB/@@download/ENCFF525UBB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF379UVJ bed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF518YCG 4546313 ENCODE Processing Pipeline ff354041621eb255e591b19c2fc434f5 https://www.encodeproject.org/files/ENCFF379UVJ/@@download/ENCFF379UVJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF037GCL bigBed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF999AHU 3297112 ENCODE Processing Pipeline 563141aa5501aba39d34b420bca2dcdf https://www.encodeproject.org/files/ENCFF037GCL/@@download/ENCFF037GCL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF999AHU bed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF518YCG, ENCFF669MCR 1500573 ENCODE Processing Pipeline fac03f9d6fd29865e31e9842bb804dc4 https://www.encodeproject.org/files/ENCFF999AHU/@@download/ENCFF999AHU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF640FXG bigBed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF379UVJ 10162216 ENCODE Processing Pipeline a5627e4cf672472523cecd228985e5b8 https://www.encodeproject.org/files/ENCFF640FXG/@@download/ENCFF640FXG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF966ZQK bigBed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF525UBB 8993641 ENCODE Processing Pipeline 70e71929ae62505b8df7ea33274db68c https://www.encodeproject.org/files/ENCFF966ZQK/@@download/ENCFF966ZQK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF680AFA bed narrowPeak conservative idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF379UVJ, ENCFF525UBB, ENCFF547MET, ENCFF999AHU 204575 ENCODE Processing Pipeline 2a37c3b611f96c9f721a3e947e594b92 https://www.encodeproject.org/files/ENCFF680AFA/@@download/ENCFF680AFA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF949LUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF612GBQ 429966 ENCODE Processing Pipeline a60ea17759ff04c719329682acffaffa https://www.encodeproject.org/files/ENCFF949LUZ/@@download/ENCFF949LUZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF723RBB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF680AFA 407619 ENCODE Processing Pipeline 0519bbc403bbaca70af029b103f0d681 https://www.encodeproject.org/files/ENCFF723RBB/@@download/ENCFF723RBB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF612GBQ bed narrowPeak optimal idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF379UVJ, ENCFF525UBB, ENCFF547MET, ENCFF999AHU 219439 ENCODE Processing Pipeline 7969d02e58f8bed5f6fe8bf47dc5db20 https://www.encodeproject.org/files/ENCFF612GBQ/@@download/ENCFF612GBQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001NZW bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NZZ 336147114 Michael Snyder, Stanford af4abb2b69d60d22a51310affa1274e1 https://www.encodeproject.org/files/ENCFF001NZW/@@download/ENCFF001NZW.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NZX bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OAB 321355725 Michael Snyder, Stanford 04a705fbd9afd22c4d5739b936741cdb https://www.encodeproject.org/files/ENCFF001NZX/@@download/ENCFF001NZX.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NZY bigBed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKG 232535 Michael Snyder, Stanford a654f9e3a407fd364d60293dcc0797a9 https://www.encodeproject.org/files/ENCFF001NZY/@@download/ENCFF001NZY.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001NZZ fastq reads ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 981501386 Michael Snyder, Stanford b7bb2897c6e833cf8c346f97f4bc0cd0 https://www.encodeproject.org/files/ENCFF001NZZ/@@download/ENCFF001NZZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NUK/ released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001OAB fastq reads ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 885168689 Michael Snyder, Stanford 9c57726f8e8b5c0ea33cf3c98cfa106b https://www.encodeproject.org/files/ENCFF001OAB/@@download/ENCFF001OAB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NUK/ released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001OAD bigWig signal ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NZW, ENCFF001NZX 311304052 Michael Snyder, Stanford 6c322cf25b8788d3e6d8f05734a07686 https://www.encodeproject.org/files/ENCFF001OAD/@@download/ENCFF001OAD.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001YKG bed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NZW, ENCFF001NZX 78055 Michael Snyder, Stanford 798d5816592dd91660fd2e8392470b72 https://www.encodeproject.org/files/ENCFF001YKG/@@download/ENCFF001YKG.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF926MJV bam unfiltered alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NZZ, ENCFF018NEO 962198316 ENCODE Processing Pipeline 806bde806af47d4aee9f9335bc714696 https://www.encodeproject.org/files/ENCFF926MJV/@@download/ENCFF926MJV.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF731OEQ bam unfiltered alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAB, ENCFF018NEO 867168487 ENCODE Processing Pipeline 01f7bae8a793b8dd7ed4cb7fb13a31be https://www.encodeproject.org/files/ENCFF731OEQ/@@download/ENCFF731OEQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF206APZ bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAB, ENCFF018NEO 388544918 ENCODE Processing Pipeline 51f2648eb0e121be2e73668e87f7a558 https://www.encodeproject.org/files/ENCFF206APZ/@@download/ENCFF206APZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF251WMT bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NZZ, ENCFF018NEO 384417298 ENCODE Processing Pipeline 0690ff1011df2eb824e7a23413a21fd5 https://www.encodeproject.org/files/ENCFF251WMT/@@download/ENCFF251WMT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF012BQJ bigWig signal p-value ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF017EBX, ENCFF251WMT 297923094 ENCODE Processing Pipeline dcd8f1f4bd6de8c285fce8804c935391 https://www.encodeproject.org/files/ENCFF012BQJ/@@download/ENCFF012BQJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF980GDG bigWig signal p-value ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF017EBX, ENCFF206APZ 288449052 ENCODE Processing Pipeline 8f013eafe5a7f2f349ab1640ad58ff3a https://www.encodeproject.org/files/ENCFF980GDG/@@download/ENCFF980GDG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF869VGC bigWig signal p-value ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017EBX, ENCFF206APZ, ENCFF251WMT 405061219 ENCODE Processing Pipeline 0cb0e8991d34c1da7578739894b9a339 https://www.encodeproject.org/files/ENCFF869VGC/@@download/ENCFF869VGC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF794TVA bigWig fold change over control ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF017EBX, ENCFF251WMT 196681499 ENCODE Processing Pipeline 3bc36da8185a53cf7bbd92a6b6158775 https://www.encodeproject.org/files/ENCFF794TVA/@@download/ENCFF794TVA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF364JSW bigWig fold change over control ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF017EBX, ENCFF206APZ 209093221 ENCODE Processing Pipeline 0aca9cc15103b89f785fd95aa52528d9 https://www.encodeproject.org/files/ENCFF364JSW/@@download/ENCFF364JSW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF790OHZ bigWig fold change over control ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017EBX, ENCFF206APZ, ENCFF251WMT 365348005 ENCODE Processing Pipeline ded9969674d983489edf70047baecb23 https://www.encodeproject.org/files/ENCFF790OHZ/@@download/ENCFF790OHZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF261QKD bed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF017EBX, ENCFF251WMT 3898919 ENCODE Processing Pipeline 62e22ca272553d94ac40af2100068f7d https://www.encodeproject.org/files/ENCFF261QKD/@@download/ENCFF261QKD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF625GKR bed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF017EBX, ENCFF206APZ 4997166 ENCODE Processing Pipeline 465925ccf3dbfe418c3a5967348545ae https://www.encodeproject.org/files/ENCFF625GKR/@@download/ENCFF625GKR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF998UBT bed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017EBX, ENCFF206APZ, ENCFF251WMT 5750560 ENCODE Processing Pipeline 57bdbf7c508acf0a85ef79013f53da00 https://www.encodeproject.org/files/ENCFF998UBT/@@download/ENCFF998UBT.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF675OVJ bigBed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF261QKD 9644619 ENCODE Processing Pipeline 014fda55a845da70e65c1cced62d0177 https://www.encodeproject.org/files/ENCFF675OVJ/@@download/ENCFF675OVJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF941FHL bigBed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF625GKR 12752504 ENCODE Processing Pipeline 2838fd6932952c65a45bc80ada5a8842 https://www.encodeproject.org/files/ENCFF941FHL/@@download/ENCFF941FHL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF220OYK bed narrowPeak conservative idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF261QKD, ENCFF547MET, ENCFF625GKR, ENCFF998UBT 99173 ENCODE Processing Pipeline d9670fab892cc9b9cd6ecd2ddf50c533 https://www.encodeproject.org/files/ENCFF220OYK/@@download/ENCFF220OYK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF186NFT bigBed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF998UBT 13137529 ENCODE Processing Pipeline ab45da04bfe538aa52ca12b762fefa1b https://www.encodeproject.org/files/ENCFF186NFT/@@download/ENCFF186NFT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF040DWG bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF220OYK 267157 ENCODE Processing Pipeline bfc5753f10f6aa6e8b4b803e89cb5e44 https://www.encodeproject.org/files/ENCFF040DWG/@@download/ENCFF040DWG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF633EAU bed narrowPeak optimal idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF261QKD, ENCFF547MET, ENCFF625GKR, ENCFF998UBT 129470 ENCODE Processing Pipeline 935cc47905af07cb1433dc0cb5a00845 https://www.encodeproject.org/files/ENCFF633EAU/@@download/ENCFF633EAU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF469ZIW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF633EAU 368676 ENCODE Processing Pipeline fe981078a8fde5e670a2a417da3bddb4 https://www.encodeproject.org/files/ENCFF469ZIW/@@download/ENCFF469ZIW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF685COX fastq reads ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1017250765 Richard Myers, HAIB a885b6c7c5ecb73ece6493201a9c864e SRA:SRR5111151 https://www.encodeproject.org/files/ENCFF685COX/@@download/ENCFF685COX.fastq.gz Illumina HiSeq 2000 /files/ENCFF770PBO/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF671DZT fastq reads ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1277894350 Richard Myers, HAIB 644c5848a8ef826af1f6cc8ba3f9c922 SRA:SRR5111152 https://www.encodeproject.org/files/ENCFF671DZT/@@download/ENCFF671DZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF770PBO/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF812WVE bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF685COX, ENCFF806TVZ 657195056 ENCODE Processing Pipeline 5c9fc9795c5364ee5baa2bd582036f95 https://www.encodeproject.org/files/ENCFF812WVE/@@download/ENCFF812WVE.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF681IOT bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF671DZT, ENCFF806TVZ 807411898 ENCODE Processing Pipeline b60c1f2faf0bfebf71bab0f1cc87c629 https://www.encodeproject.org/files/ENCFF681IOT/@@download/ENCFF681IOT.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF650CYV bam unfiltered alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 942940778 ENCODE Processing Pipeline 130c4176edefbc8df8ef7eb6e09726c2 https://www.encodeproject.org/files/ENCFF650CYV/@@download/ENCFF650CYV.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF148MSI bam unfiltered alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 1186178131 ENCODE Processing Pipeline 956bec6fca892218b07584527f791e4f https://www.encodeproject.org/files/ENCFF148MSI/@@download/ENCFF148MSI.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF812TBN bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 807345030 ENCODE Processing Pipeline 70a5235089f57eea2245dc746106137f https://www.encodeproject.org/files/ENCFF812TBN/@@download/ENCFF812TBN.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF906IPW bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 657128090 ENCODE Processing Pipeline 3ff3f8762053189bc31bc5b5deb96fe3 https://www.encodeproject.org/files/ENCFF906IPW/@@download/ENCFF906IPW.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF924UET bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 381849698 ENCODE Processing Pipeline b0199358bd2b969a00d378a9fcaed228 https://www.encodeproject.org/files/ENCFF924UET/@@download/ENCFF924UET.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF528HLZ bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 341933475 ENCODE Processing Pipeline 8dc2ba55baa7fc6f0851ea236ffa96a1 https://www.encodeproject.org/files/ENCFF528HLZ/@@download/ENCFF528HLZ.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF416UWZ bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 322791298 ENCODE Processing Pipeline b33ff68bf8518bf4a016b3cca16c4c87 https://www.encodeproject.org/files/ENCFF416UWZ/@@download/ENCFF416UWZ.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF030TZD bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 429133867 ENCODE Processing Pipeline e9397a556ebdd3ffee49589fe93e6204 https://www.encodeproject.org/files/ENCFF030TZD/@@download/ENCFF030TZD.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF469JZH bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 277928065 ENCODE Processing Pipeline 350cc32df2c8e1a45ec619020d205a2f https://www.encodeproject.org/files/ENCFF469JZH/@@download/ENCFF469JZH.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF685EPG bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 504771202 ENCODE Processing Pipeline 35645d931469c4690e0f88ff43b87069 https://www.encodeproject.org/files/ENCFF685EPG/@@download/ENCFF685EPG.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF104PYP bed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 5916227 ENCODE Processing Pipeline 0fe0d6ed24326d4f9768e390ee39fe0e https://www.encodeproject.org/files/ENCFF104PYP/@@download/ENCFF104PYP.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF686MBJ bed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 5221037 ENCODE Processing Pipeline 797ead747ec5d7de359b31b36c6c0fa2 https://www.encodeproject.org/files/ENCFF686MBJ/@@download/ENCFF686MBJ.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF880QHG bed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 5036842 ENCODE Processing Pipeline 2fbc1579d3b5fae9cb7c4e17cd601c4a https://www.encodeproject.org/files/ENCFF880QHG/@@download/ENCFF880QHG.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF878VUM bigBed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF880QHG 11022291 ENCODE Processing Pipeline 29cb12d1302175ebdb238e9a49b32a0d https://www.encodeproject.org/files/ENCFF878VUM/@@download/ENCFF878VUM.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF735IIP bigBed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP 11330426 ENCODE Processing Pipeline 4506a3211aab2c4d81f513afa93d3400 https://www.encodeproject.org/files/ENCFF735IIP/@@download/ENCFF735IIP.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF756ZVS bigBed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF686MBJ 10971655 ENCODE Processing Pipeline 10a98be2251dfc96d1dd2f5f2d51a588 https://www.encodeproject.org/files/ENCFF756ZVS/@@download/ENCFF756ZVS.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF756ROG bed narrowPeak conservative idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP, ENCFF547MET, ENCFF686MBJ, ENCFF880QHG 1160533 ENCODE Processing Pipeline 08bbbc987c4aca526274c8231381a98e https://www.encodeproject.org/files/ENCFF756ROG/@@download/ENCFF756ROG.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF089DTP bigBed narrowPeak optimal idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF283XCT 2344299 ENCODE Processing Pipeline d699dea194e78b137bdeb57f542e5e86 https://www.encodeproject.org/files/ENCFF089DTP/@@download/ENCFF089DTP.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF822GCD bigBed narrowPeak conservative idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF756ROG 2296039 ENCODE Processing Pipeline 6cd2519e530646dc927ce289f840b2ae https://www.encodeproject.org/files/ENCFF822GCD/@@download/ENCFF822GCD.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF283XCT bed narrowPeak optimal idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP, ENCFF547MET, ENCFF686MBJ, ENCFF880QHG 1193732 ENCODE Processing Pipeline d4c5cfb2455bb43afd656c8b8b4bc646 https://www.encodeproject.org/files/ENCFF283XCT/@@download/ENCFF283XCT.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF001NOR bigBed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIZ 625695 Michael Snyder, Stanford af95b4fcea4b3ac3f5e34e62ceddfd76 https://www.encodeproject.org/files/ENCFF001NOR/@@download/ENCFF001NOR.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001NOS fastq reads ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 907607812 Michael Snyder, Stanford da55e1e50bcf0187121c85ad587434f6 https://www.encodeproject.org/files/ENCFF001NOS/@@download/ENCFF001NOS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001NOU fastq reads ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1296660609 Michael Snyder, Stanford 65ffe82aba3f17c49a4ec459bf16bb53 https://www.encodeproject.org/files/ENCFF001NOU/@@download/ENCFF001NOU.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001NOW bigWig signal ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOX, ENCFF001NOY 345179917 Michael Snyder, Stanford 1a0869388e4ba33b8a26c4676a038cda https://www.encodeproject.org/files/ENCFF001NOW/@@download/ENCFF001NOW.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001NOX bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NOS 382364859 Michael Snyder, Stanford b76779103560d0159ab1c0e3a653c69d https://www.encodeproject.org/files/ENCFF001NOX/@@download/ENCFF001NOX.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001NOY bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NOU 559349891 Michael Snyder, Stanford 9f4b1048a0aee7a40e284f507741fc89 https://www.encodeproject.org/files/ENCFF001NOY/@@download/ENCFF001NOY.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001YIZ bed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOX, ENCFF001NOY 259874 Michael Snyder, Stanford 564bfe9c5a4a443d0695301ae01d97f4 https://www.encodeproject.org/files/ENCFF001YIZ/@@download/ENCFF001YIZ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF096SMI bam unfiltered alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOU, ENCFF018NEO 1380088974 ENCODE Processing Pipeline 2e9d37882dfcf77e7adea90ad202a5c2 https://www.encodeproject.org/files/ENCFF096SMI/@@download/ENCFF096SMI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF585WKE bam unfiltered alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOS, ENCFF018NEO 990974140 ENCODE Processing Pipeline 942ac93bdc387107e12bf1be4607fabe https://www.encodeproject.org/files/ENCFF585WKE/@@download/ENCFF585WKE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF544KYC bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOS, ENCFF018NEO 570358979 ENCODE Processing Pipeline 3402504a9e11be493ad493dd309e93db https://www.encodeproject.org/files/ENCFF544KYC/@@download/ENCFF544KYC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF318YRW bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOU, ENCFF018NEO 818401125 ENCODE Processing Pipeline d658374ad999a7d07ca03dfb70bd3cf6 https://www.encodeproject.org/files/ENCFF318YRW/@@download/ENCFF318YRW.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF729BYA bigWig signal p-value ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF544KYC 237139852 ENCODE Processing Pipeline aa21466ca8ef7a67cbc9d43c7d952c7d https://www.encodeproject.org/files/ENCFF729BYA/@@download/ENCFF729BYA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF363EXK bed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF544KYC 4513739 ENCODE Processing Pipeline c4181f66c2493e5e92370e26292e7203 https://www.encodeproject.org/files/ENCFF363EXK/@@download/ENCFF363EXK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF025OWG bigWig signal p-value ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF318YRW, ENCFF544KYC 327747823 ENCODE Processing Pipeline 62bd30952fed2f0cc155f4aeaa1643d5 https://www.encodeproject.org/files/ENCFF025OWG/@@download/ENCFF025OWG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF494YES bed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF318YRW 4837974 ENCODE Processing Pipeline 057edac6c8f90fa7c856822a7a7240c6 https://www.encodeproject.org/files/ENCFF494YES/@@download/ENCFF494YES.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF072QBH bigBed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF561ZYK 10889788 ENCODE Processing Pipeline 6468147388873904f7c79c933fd55771 https://www.encodeproject.org/files/ENCFF072QBH/@@download/ENCFF072QBH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF564JKI bigWig signal p-value ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF318YRW 309445116 ENCODE Processing Pipeline 9295a8becf50136ec0d1e3f475d514d8 https://www.encodeproject.org/files/ENCFF564JKI/@@download/ENCFF564JKI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF994WMV bigWig fold change over control ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF544KYC 244645964 ENCODE Processing Pipeline 897311c3db6236197c64fa9028faa9c8 https://www.encodeproject.org/files/ENCFF994WMV/@@download/ENCFF994WMV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF898AEA bigBed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF363EXK 10231696 ENCODE Processing Pipeline 86b9ac6a40e13a5173f8e8613ecacd7e https://www.encodeproject.org/files/ENCFF898AEA/@@download/ENCFF898AEA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF619QFB bigBed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF494YES 10580542 ENCODE Processing Pipeline be459453511b82f026d75258a8e1a6f7 https://www.encodeproject.org/files/ENCFF619QFB/@@download/ENCFF619QFB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF946IGX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF083AYA 584356 ENCODE Processing Pipeline 8bc2d0abaa3e51846003297d1fe0c95e https://www.encodeproject.org/files/ENCFF946IGX/@@download/ENCFF946IGX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF728CCM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF981ENW 664100 ENCODE Processing Pipeline 5177714c5b8e2dd897aa7f0fb5556f9d https://www.encodeproject.org/files/ENCFF728CCM/@@download/ENCFF728CCM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF252OTG bigWig fold change over control ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF318YRW, ENCFF544KYC 519119745 ENCODE Processing Pipeline b63e0658ce9ceb491174221ff0e5e081 https://www.encodeproject.org/files/ENCFF252OTG/@@download/ENCFF252OTG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF561ZYK bed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF318YRW, ENCFF544KYC 5414369 ENCODE Processing Pipeline 066a8935044aff2f1850959b87670741 https://www.encodeproject.org/files/ENCFF561ZYK/@@download/ENCFF561ZYK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF083AYA bed narrowPeak conservative idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF363EXK, ENCFF494YES, ENCFF547MET, ENCFF561ZYK 263977 ENCODE Processing Pipeline e92048f09f93bbc7e5be605d49d28e61 https://www.encodeproject.org/files/ENCFF083AYA/@@download/ENCFF083AYA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF981ENW bed narrowPeak optimal idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF363EXK, ENCFF494YES, ENCFF547MET, ENCFF561ZYK 312995 ENCODE Processing Pipeline 0ea0e673f1b8c32f2a837e8b4d37e448 https://www.encodeproject.org/files/ENCFF981ENW/@@download/ENCFF981ENW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF778VWR bigWig fold change over control ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF318YRW 338743082 ENCODE Processing Pipeline f1d2f34e8f9f3f1af43c7626007d787d https://www.encodeproject.org/files/ENCFF778VWR/@@download/ENCFF778VWR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms duplicate lane review, biological replicates with identical biosample ENCFF001MWF bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MWI 679641979 Ross Hardison, PennState 8f46bfea7c3c4e3d23734c9bee9faf5a https://www.encodeproject.org/files/ENCFF001MWF/@@download/ENCFF001MWF.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWG bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MWO 1726669029 Ross Hardison, PennState ccb83366557c69d9834c4ba84127ab54 https://www.encodeproject.org/files/ENCFF001MWG/@@download/ENCFF001MWG.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWH bigBed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGV 572247 Ross Hardison, PennState 5c6671b88aef74150dbe41b6a15006e0 https://www.encodeproject.org/files/ENCFF001MWH/@@download/ENCFF001MWH.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWI fastq reads ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 604129003 Ross Hardison, PennState ce9652a5847c3b0e1e66ee7aa1299d8c https://www.encodeproject.org/files/ENCFF001MWI/@@download/ENCFF001MWI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWJ bigBed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGX 1393896 Ross Hardison, PennState 6ee4a86c61429ab4a521e5fb7ff611f1 https://www.encodeproject.org/files/ENCFF001MWJ/@@download/ENCFF001MWJ.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWK bigBed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGW 344188 Ross Hardison, PennState a19948da56f6fdbee316371cf7a6ab04 https://www.encodeproject.org/files/ENCFF001MWK/@@download/ENCFF001MWK.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWL bigWig signal ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2512947944 Ross Hardison, PennState 2618fbffa78e80b37721d73104400395 https://www.encodeproject.org/files/ENCFF001MWL/@@download/ENCFF001MWL.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance missing derived_from ENCFF001MWN bigWig signal ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2374320363 Ross Hardison, PennState 2fef2654d27f219ef06ba3d6ebfb5fd3 https://www.encodeproject.org/files/ENCFF001MWN/@@download/ENCFF001MWN.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance missing derived_from ENCFF001MWO fastq reads ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1379900193 Ross Hardison, PennState 5153ac365af5150ebaaea40493684128 https://www.encodeproject.org/files/ENCFF001MWO/@@download/ENCFF001MWO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWM/ released mild to moderate bottlenecking, mixed read lengths, inconsistent control read length, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF001MWP bigWig signal ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 4299513671 Ross Hardison, PennState 7cc7fa5e0b35960e12a3d98bf682cdce https://www.encodeproject.org/files/ENCFF001MWP/@@download/ENCFF001MWP.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance missing derived_from ENCFF001YGV bed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 339846 Ross Hardison, PennState b413fbb66114ec48fe04306e83a1f1dd https://www.encodeproject.org/files/ENCFF001YGV/@@download/ENCFF001YGV.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance missing derived_from ENCFF001YGW bed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 122182 Ross Hardison, PennState 592d2188ad853ff2f0eb4b8d083f9c2c https://www.encodeproject.org/files/ENCFF001YGW/@@download/ENCFF001YGW.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance missing derived_from ENCFF001YGX bed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 756324 Ross Hardison, PennState 5d1495ec1ab1793142b60f4d7675f546 https://www.encodeproject.org/files/ENCFF001YGX/@@download/ENCFF001YGX.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance missing derived_from ENCFF085HCW bam unfiltered alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWO, ENCFF018NEO 1666505897 ENCODE Processing Pipeline bec8fddb90d206a7d11cbdccfc2c2ce3 https://www.encodeproject.org/files/ENCFF085HCW/@@download/ENCFF085HCW.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF404ULM bam unfiltered alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWI, ENCFF018NEO 727861723 ENCODE Processing Pipeline afee234371cb9e31240de58a32a01825 https://www.encodeproject.org/files/ENCFF404ULM/@@download/ENCFF404ULM.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF427PQW bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWI, ENCFF018NEO 439870312 ENCODE Processing Pipeline 57083d80ac771a7696ffacdfabe8675f https://www.encodeproject.org/files/ENCFF427PQW/@@download/ENCFF427PQW.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF148BGJ bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWO, ENCFF018NEO 1174575879 ENCODE Processing Pipeline 68acd36887909bd8ae3597772976d9a0 https://www.encodeproject.org/files/ENCFF148BGJ/@@download/ENCFF148BGJ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF072NOF bigWig signal p-value ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 714537231 ENCODE Processing Pipeline 48bffec5f8478cff98ff6e32e45759eb https://www.encodeproject.org/files/ENCFF072NOF/@@download/ENCFF072NOF.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF200KKX bigWig signal p-value ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF148BGJ, ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 986698923 ENCODE Processing Pipeline 30188b45ba20888eae4e3c17ed837227 https://www.encodeproject.org/files/ENCFF200KKX/@@download/ENCFF200KKX.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF279BGB bigWig signal p-value ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF148BGJ, ENCFF339MRB, ENCFF484XJK 861490600 ENCODE Processing Pipeline 45a2d3f262a9bd8f61398c979fbddf27 https://www.encodeproject.org/files/ENCFF279BGB/@@download/ENCFF279BGB.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF927QYV bigWig fold change over control ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 496123974 ENCODE Processing Pipeline 452c4ebedc742a1fe473b2765509bd7a https://www.encodeproject.org/files/ENCFF927QYV/@@download/ENCFF927QYV.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF851NUC bigWig fold change over control ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF148BGJ, ENCFF339MRB, ENCFF484XJK 808424460 ENCODE Processing Pipeline e7379f3faa3810196c124fdef0178333 https://www.encodeproject.org/files/ENCFF851NUC/@@download/ENCFF851NUC.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF398WUM bigWig fold change over control ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF148BGJ, ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 1032429745 ENCODE Processing Pipeline 20ce180de0c0801c319448e23a169daa https://www.encodeproject.org/files/ENCFF398WUM/@@download/ENCFF398WUM.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF702KXH bed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF148BGJ, ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 6694802 ENCODE Processing Pipeline f2fda419c30abb6c05980f9d85b6a0c4 https://www.encodeproject.org/files/ENCFF702KXH/@@download/ENCFF702KXH.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF242JJL bed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF148BGJ, ENCFF339MRB, ENCFF484XJK 6903434 ENCODE Processing Pipeline 14ecb7a953f34da30bee3cd95fc10c1e https://www.encodeproject.org/files/ENCFF242JJL/@@download/ENCFF242JJL.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF375BOL bigBed narrowPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF242JJL 13053496 ENCODE Processing Pipeline 686438a2cf0e7c93f556c568b0e288d4 https://www.encodeproject.org/files/ENCFF375BOL/@@download/ENCFF375BOL.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF433SGC bed narrowPeak optimal idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF226EPH, ENCFF242JJL, ENCFF547MET, ENCFF702KXH 99692 ENCODE Processing Pipeline eec6085cda68d73adddb7baf3c50ef15 https://www.encodeproject.org/files/ENCFF433SGC/@@download/ENCFF433SGC.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF226EPH bed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 5725536 ENCODE Processing Pipeline 7df932772bad0a6ec7932a4b4942993f https://www.encodeproject.org/files/ENCFF226EPH/@@download/ENCFF226EPH.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF981SVM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF192DJO 86106 ENCODE Processing Pipeline 9ef8a47e8e3349b1d20a5c2bd1e27a64 https://www.encodeproject.org/files/ENCFF981SVM/@@download/ENCFF981SVM.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF192DJO bed narrowPeak conservative idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF226EPH, ENCFF242JJL, ENCFF547MET, ENCFF702KXH 8586 ENCODE Processing Pipeline 4e56bcfab33f839c7d093f3d6487f18e https://www.encodeproject.org/files/ENCFF192DJO/@@download/ENCFF192DJO.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF634ILC bigBed narrowPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF226EPH 11133451 ENCODE Processing Pipeline dda81f5f84c426775a6aece83101b932 https://www.encodeproject.org/files/ENCFF634ILC/@@download/ENCFF634ILC.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF811BWX bigBed narrowPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF702KXH 13444678 ENCODE Processing Pipeline 53247c85aa410de39524e1e43d05c82f https://www.encodeproject.org/files/ENCFF811BWX/@@download/ENCFF811BWX.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF224MIN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF433SGC 233440 ENCODE Processing Pipeline 8651f6223cb3a2b818aafc96a3b8ed31 https://www.encodeproject.org/files/ENCFF224MIN/@@download/ENCFF224MIN.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read length, low read depth, inconsistent platforms, borderline replicate concordance ENCFF051PSQ fastq reads ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 852699723 Richard Myers, HAIB 8d7419104a40d88e536e1e9fa30c9d84 SRA:SRR5112332 https://www.encodeproject.org/files/ENCFF051PSQ/@@download/ENCFF051PSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF286ECX/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF797QNA fastq reads ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 936368635 Richard Myers, HAIB c1649907e4a03eaf4982f07ceadfd2b6 SRA:SRR5112333 https://www.encodeproject.org/files/ENCFF797QNA/@@download/ENCFF797QNA.fastq.gz Illumina HiSeq 2000 /files/ENCFF197BDN/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF590JMP bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF051PSQ, ENCFF806TVZ 677356279 ENCODE Processing Pipeline 1750444a2ef9fb845ac581152d2d2fe1 https://www.encodeproject.org/files/ENCFF590JMP/@@download/ENCFF590JMP.bam mm10-minimal archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF453ACX bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF797QNA, ENCFF806TVZ 744324139 ENCODE Processing Pipeline be394ee59a13554a68243789d4d017c5 https://www.encodeproject.org/files/ENCFF453ACX/@@download/ENCFF453ACX.bam mm10-minimal archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF281IER bam unfiltered alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF051PSQ 933980110 ENCODE Processing Pipeline ba9184901e0bbb7655e5311b461b0be4 https://www.encodeproject.org/files/ENCFF281IER/@@download/ENCFF281IER.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF296RQE bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF797QNA 744187819 ENCODE Processing Pipeline c64db4250d7d72fae588cef8104b13e9 https://www.encodeproject.org/files/ENCFF296RQE/@@download/ENCFF296RQE.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF563KAP bam unfiltered alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF797QNA 1023979108 ENCODE Processing Pipeline bb0160bccce784a1958a579afe68e51b https://www.encodeproject.org/files/ENCFF563KAP/@@download/ENCFF563KAP.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF844MYB bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF051PSQ 677244030 ENCODE Processing Pipeline 321923a573d1d8fd575f0e37f8780d3e https://www.encodeproject.org/files/ENCFF844MYB/@@download/ENCFF844MYB.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF205DDI bigWig signal p-value ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF363JGX, ENCFF844MYB 310849813 ENCODE Processing Pipeline 1f88210410a9be16005284ecf7b83b47 https://www.encodeproject.org/files/ENCFF205DDI/@@download/ENCFF205DDI.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF591LJF bigWig signal p-value ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF296RQE, ENCFF352PVF, ENCFF363JGX, ENCFF844MYB 595437959 ENCODE Processing Pipeline 9b951419f5884f44b27642e0ef9c30b8 https://www.encodeproject.org/files/ENCFF591LJF/@@download/ENCFF591LJF.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF704DPP bigWig fold change over control ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF363JGX, ENCFF844MYB 346612728 ENCODE Processing Pipeline bb227d6461528c2a7ea91d2b6f793c9d https://www.encodeproject.org/files/ENCFF704DPP/@@download/ENCFF704DPP.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF784VLV bigWig signal p-value ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF296RQE, ENCFF352PVF 327642675 ENCODE Processing Pipeline 8293e0361d46c4cca4844aebe66c5153 https://www.encodeproject.org/files/ENCFF784VLV/@@download/ENCFF784VLV.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF367NLZ bigWig fold change over control ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF296RQE, ENCFF352PVF 363215501 ENCODE Processing Pipeline dc09233d2c39872860f6e66013d88b1d https://www.encodeproject.org/files/ENCFF367NLZ/@@download/ENCFF367NLZ.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF184GHO bed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF296RQE, ENCFF352PVF 4602071 ENCODE Processing Pipeline 0304efff164cdd77ee0f38c0f6991d3b https://www.encodeproject.org/files/ENCFF184GHO/@@download/ENCFF184GHO.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF514IKI bed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF296RQE, ENCFF352PVF, ENCFF363JGX, ENCFF844MYB 5735264 ENCODE Processing Pipeline 66dfe8a85183dd10d99bfbeed71f964d https://www.encodeproject.org/files/ENCFF514IKI/@@download/ENCFF514IKI.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF787DRX bed narrowPeak optimal idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF184GHO, ENCFF514IKI, ENCFF547MET, ENCFF845YIG 300441 ENCODE Processing Pipeline 9d0f2b10155454b870c0e7d1d1b2b776 https://www.encodeproject.org/files/ENCFF787DRX/@@download/ENCFF787DRX.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF406NAB bigBed narrowPeak peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF845YIG 10756393 ENCODE Processing Pipeline 53bafe9d3928c65d357028175f0832ea https://www.encodeproject.org/files/ENCFF406NAB/@@download/ENCFF406NAB.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF696JSM bigBed narrowPeak peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF184GHO 10876772 ENCODE Processing Pipeline 0ad6d54a252e60124610ae060e7ac33c https://www.encodeproject.org/files/ENCFF696JSM/@@download/ENCFF696JSM.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF805ZNE bigBed narrowPeak peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF514IKI 11394515 ENCODE Processing Pipeline 633182eb0905aaffc3368f78368cb021 https://www.encodeproject.org/files/ENCFF805ZNE/@@download/ENCFF805ZNE.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF845YIG bed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF363JGX, ENCFF844MYB 4589856 ENCODE Processing Pipeline 31cfc05b4e4102b4f8c47f51c79add16 https://www.encodeproject.org/files/ENCFF845YIG/@@download/ENCFF845YIG.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF427SVX bigBed narrowPeak conservative idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF544EQO 626463 ENCODE Processing Pipeline 9d68dce3afbe1473305419c0bcb6f950 https://www.encodeproject.org/files/ENCFF427SVX/@@download/ENCFF427SVX.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF549QHQ bigWig fold change over control ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF296RQE, ENCFF352PVF, ENCFF363JGX, ENCFF844MYB 738832427 ENCODE Processing Pipeline e3d7adb6256331562854b22840702a64 https://www.encodeproject.org/files/ENCFF549QHQ/@@download/ENCFF549QHQ.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF544EQO bed narrowPeak conservative idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF184GHO, ENCFF514IKI, ENCFF547MET, ENCFF845YIG 278636 ENCODE Processing Pipeline 44fdcc30d0dbe91934147252949f0b4d https://www.encodeproject.org/files/ENCFF544EQO/@@download/ENCFF544EQO.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF138PST bigBed narrowPeak optimal idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF787DRX 661563 ENCODE Processing Pipeline b0c9fc904c8fe82acb17c4e7395d1ab9 https://www.encodeproject.org/files/ENCFF138PST/@@download/ENCFF138PST.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF524BAT fastq reads ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1114272463 Richard Myers, HAIB 25c9181e232ffe373adf917e5d56be28 SRA:SRR5111943 https://www.encodeproject.org/files/ENCFF524BAT/@@download/ENCFF524BAT.fastq.gz Illumina HiSeq 2000 /files/ENCFF285EZB/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF472KEL fastq reads ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 991464388 Richard Myers, HAIB 389c92becfef24c09cfa179c5482fcf7 SRA:SRR5111944 https://www.encodeproject.org/files/ENCFF472KEL/@@download/ENCFF472KEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF285EZB/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF778JBR bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF472KEL, ENCFF806TVZ 799393761 ENCODE Processing Pipeline 98a7d322706fbc5d9571d82f2bf90fb8 https://www.encodeproject.org/files/ENCFF778JBR/@@download/ENCFF778JBR.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF287DOM bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF524BAT, ENCFF806TVZ 896151362 ENCODE Processing Pipeline d518c66327685ded74a65b80862c45b1 https://www.encodeproject.org/files/ENCFF287DOM/@@download/ENCFF287DOM.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF970DRN bam unfiltered alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 1062789295 ENCODE Processing Pipeline c7d8ed6edc87bc4ac120d41372f90ec5 https://www.encodeproject.org/files/ENCFF970DRN/@@download/ENCFF970DRN.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF160VYC bam unfiltered alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 1193783116 ENCODE Processing Pipeline faf0d56cb09e91de85097ba2a986c1aa https://www.encodeproject.org/files/ENCFF160VYC/@@download/ENCFF160VYC.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF090OZS bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 799264007 ENCODE Processing Pipeline fcdcce95bdb388d29eecd53730dc4c1a https://www.encodeproject.org/files/ENCFF090OZS/@@download/ENCFF090OZS.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF604FDV bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 896015737 ENCODE Processing Pipeline 90ac4307f906cd7895038a40865dd7e3 https://www.encodeproject.org/files/ENCFF604FDV/@@download/ENCFF604FDV.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF126UDE bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 382105302 ENCODE Processing Pipeline b827997367e40e41f456a3564f587972 https://www.encodeproject.org/files/ENCFF126UDE/@@download/ENCFF126UDE.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF398YKS bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 369157395 ENCODE Processing Pipeline 2635ae0be7e53be021dcdf55e01cea19 https://www.encodeproject.org/files/ENCFF398YKS/@@download/ENCFF398YKS.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF693XGU bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 351548770 ENCODE Processing Pipeline 76b7683aefc747e006e1b30a1f847f4d https://www.encodeproject.org/files/ENCFF693XGU/@@download/ENCFF693XGU.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF571UHJ bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 479506383 ENCODE Processing Pipeline 8a25297bb71f458c204176f0cd3e5bba https://www.encodeproject.org/files/ENCFF571UHJ/@@download/ENCFF571UHJ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF518PVA bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 306544838 ENCODE Processing Pipeline 78f2baeaa290a2b0e8c2496d31bb0a14 https://www.encodeproject.org/files/ENCFF518PVA/@@download/ENCFF518PVA.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF176KNA bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 545676684 ENCODE Processing Pipeline 2a7fb8a9637be881ae5037986a11a57e https://www.encodeproject.org/files/ENCFF176KNA/@@download/ENCFF176KNA.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF452VPT bed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 4998506 ENCODE Processing Pipeline cb30aeeb980d960a9a23f5751bc52a72 https://www.encodeproject.org/files/ENCFF452VPT/@@download/ENCFF452VPT.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF179TEC bigBed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF040OPZ 10825071 ENCODE Processing Pipeline 710fb36ddd7355fe8cf95fb40a22f835 https://www.encodeproject.org/files/ENCFF179TEC/@@download/ENCFF179TEC.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF161NMS bigBed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF095TOF 11312117 ENCODE Processing Pipeline 3c0475e551bdaf6cd7be45e4ed1d0de9 https://www.encodeproject.org/files/ENCFF161NMS/@@download/ENCFF161NMS.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF095TOF bed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 5391322 ENCODE Processing Pipeline 5e514aad8fe950ef7f32752b7837de05 https://www.encodeproject.org/files/ENCFF095TOF/@@download/ENCFF095TOF.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF890HAR bigBed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF452VPT 10988866 ENCODE Processing Pipeline b709d32233c902f3b54e1a09755b4a25 https://www.encodeproject.org/files/ENCFF890HAR/@@download/ENCFF890HAR.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF482ZII bigBed narrowPeak conservative idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF917TNQ 1402284 ENCODE Processing Pipeline ae870cc253b05473ddb3233878737774 https://www.encodeproject.org/files/ENCFF482ZII/@@download/ENCFF482ZII.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF040OPZ bed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 4698771 ENCODE Processing Pipeline f9d362830255d489314a68eb94d202ae https://www.encodeproject.org/files/ENCFF040OPZ/@@download/ENCFF040OPZ.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF618DXI bed narrowPeak optimal idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF040OPZ, ENCFF095TOF, ENCFF452VPT, ENCFF547MET 886626 ENCODE Processing Pipeline fd91f0be18f3e41b463bbde7375a0198 https://www.encodeproject.org/files/ENCFF618DXI/@@download/ENCFF618DXI.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF917TNQ bed narrowPeak conservative idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF040OPZ, ENCFF095TOF, ENCFF452VPT, ENCFF547MET 855879 ENCODE Processing Pipeline e9b5bb69c5b76d2336b460f6827783a7 https://www.encodeproject.org/files/ENCFF917TNQ/@@download/ENCFF917TNQ.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF463PEK bigBed narrowPeak optimal idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF618DXI 1441434 ENCODE Processing Pipeline 1de8f643a24cc3901c8f4db3fba11f25 https://www.encodeproject.org/files/ENCFF463PEK/@@download/ENCFF463PEK.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001NQZ bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJI 3024062 Michael Snyder, Stanford 9a0e8292d485a08e9b99928b1ffd0e2f https://www.encodeproject.org/files/ENCFF001NQZ/@@download/ENCFF001NQZ.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NRG bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NRQ 501210840 Michael Snyder, Stanford 23d17c5a47e085aaf9c1f7c62860c523 https://www.encodeproject.org/files/ENCFF001NRG/@@download/ENCFF001NRG.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NRH bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NRO 384521452 Michael Snyder, Stanford 639a6df2764f6fc852f73757b17977db https://www.encodeproject.org/files/ENCFF001NRH/@@download/ENCFF001NRH.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NRI bigWig signal ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRG, ENCFF001NRH 306001220 Michael Snyder, Stanford cd3625141d4deddec58583df543f2008 https://www.encodeproject.org/files/ENCFF001NRI/@@download/ENCFF001NRI.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NRO fastq reads ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 916820643 Michael Snyder, Stanford 58cae160a4926e589dbd9c89a132a8ac https://www.encodeproject.org/files/ENCFF001NRO/@@download/ENCFF001NRO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NRQ fastq reads ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1162255225 Michael Snyder, Stanford 97248a1f5bcc75bc3c0e0d735cffc277 https://www.encodeproject.org/files/ENCFF001NRQ/@@download/ENCFF001NRQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001YJI bed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRG, ENCFF001NRH 1227546 Michael Snyder, Stanford 15c11c5be6b17165d7d72000cec4c90f https://www.encodeproject.org/files/ENCFF001YJI/@@download/ENCFF001YJI.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF280MLO bam unfiltered alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 988112950 ENCODE Processing Pipeline 5ea155371ccf83a08676f0eba30bdfda https://www.encodeproject.org/files/ENCFF280MLO/@@download/ENCFF280MLO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF356ALS bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 523433771 ENCODE Processing Pipeline fc25feda3d87c364c0e19dda4036a045 https://www.encodeproject.org/files/ENCFF356ALS/@@download/ENCFF356ALS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF576RKB bam unfiltered alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 1265946866 ENCODE Processing Pipeline 48c180ca54d99a1406dab0a0925d74df https://www.encodeproject.org/files/ENCFF576RKB/@@download/ENCFF576RKB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF079MWN bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 725071316 ENCODE Processing Pipeline ab1e4725ea22d1e34eb1bac2b14e2501 https://www.encodeproject.org/files/ENCFF079MWN/@@download/ENCFF079MWN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF993KMG bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 320717110 ENCODE Processing Pipeline 8a1f996d094b1b7044b74282cbc69c04 https://www.encodeproject.org/files/ENCFF993KMG/@@download/ENCFF993KMG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF218IPF bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 327320246 ENCODE Processing Pipeline cd9dc30435022d43726be336710d14f1 https://www.encodeproject.org/files/ENCFF218IPF/@@download/ENCFF218IPF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF515BPN bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 457292783 ENCODE Processing Pipeline 51c742c00df3932515c6679a29673994 https://www.encodeproject.org/files/ENCFF515BPN/@@download/ENCFF515BPN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF583EGX bed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 4715374 ENCODE Processing Pipeline ddd97ec989c73c253459d4b0b6ecc8b9 https://www.encodeproject.org/files/ENCFF583EGX/@@download/ENCFF583EGX.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF496YAK bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 231515183 ENCODE Processing Pipeline 8bbe0d0ee4d710a29e22ea56c3fbd979 https://www.encodeproject.org/files/ENCFF496YAK/@@download/ENCFF496YAK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF591OWE bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 272210120 ENCODE Processing Pipeline cdb73f1e1bec071bfe353853af56d5be https://www.encodeproject.org/files/ENCFF591OWE/@@download/ENCFF591OWE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF460LZI bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 313895061 ENCODE Processing Pipeline 00895c902e12679966791f2aa2344375 https://www.encodeproject.org/files/ENCFF460LZI/@@download/ENCFF460LZI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF958LHR bed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 4852558 ENCODE Processing Pipeline fef2493ea2331cba9a6a648c0c476daf https://www.encodeproject.org/files/ENCFF958LHR/@@download/ENCFF958LHR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF955PBH bed narrowPeak conservative idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO, ENCFF547MET, ENCFF583EGX, ENCFF958LHR 637819 ENCODE Processing Pipeline 4e97ec0ed6a9e526c009a1c08124b76f https://www.encodeproject.org/files/ENCFF955PBH/@@download/ENCFF955PBH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF817XFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF955PBH 1139426 ENCODE Processing Pipeline 61f0ad5a29d195c4e59cd4cb05484993 https://www.encodeproject.org/files/ENCFF817XFN/@@download/ENCFF817XFN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF543BMO bed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 4127012 ENCODE Processing Pipeline b22a4bfdfb91f45b33d9033cd4e9f0a5 https://www.encodeproject.org/files/ENCFF543BMO/@@download/ENCFF543BMO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF223ASW bed narrowPeak optimal idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO, ENCFF547MET, ENCFF583EGX, ENCFF958LHR 775076 ENCODE Processing Pipeline 48f656a23d53b1ca1c828da1ffe3a066 https://www.encodeproject.org/files/ENCFF223ASW/@@download/ENCFF223ASW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF304MER bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF958LHR 10734144 ENCODE Processing Pipeline 50a7b815f53a983bad79853d15c7fb1e https://www.encodeproject.org/files/ENCFF304MER/@@download/ENCFF304MER.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF215IWE bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO 8316299 ENCODE Processing Pipeline fced9b83d7b2b2de54535dbfa106ca5d https://www.encodeproject.org/files/ENCFF215IWE/@@download/ENCFF215IWE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF343YJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF223ASW 1327898 ENCODE Processing Pipeline 4c358c1ffc65c5e36d5a63c66c873145 https://www.encodeproject.org/files/ENCFF343YJO/@@download/ENCFF343YJO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF900VFH bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF583EGX 10513833 ENCODE Processing Pipeline d49b00be239e944b64438d86df1c0c59 https://www.encodeproject.org/files/ENCFF900VFH/@@download/ENCFF900VFH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF773SFT fastq reads ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1321666970 Richard Myers, HAIB 7f1c4cccc441abb963b29c1f69601a0c SRA:SRR5111042 https://www.encodeproject.org/files/ENCFF773SFT/@@download/ENCFF773SFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF691VJX/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF414VXY fastq reads ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1275066259 Richard Myers, HAIB 6fea55c06b046aa8b7d2f4319738ef59 SRA:SRR5111041 https://www.encodeproject.org/files/ENCFF414VXY/@@download/ENCFF414VXY.fastq.gz Illumina HiSeq 2000 /files/ENCFF691VJX/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF449TKR bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF414VXY, ENCFF806TVZ 829994867 ENCODE Processing Pipeline e91dfe5e1f51be2104a6df2661535609 https://www.encodeproject.org/files/ENCFF449TKR/@@download/ENCFF449TKR.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF671YYY bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF773SFT, ENCFF806TVZ 864704311 ENCODE Processing Pipeline 34a29f314d778a64e2bfd3c8e354488d https://www.encodeproject.org/files/ENCFF671YYY/@@download/ENCFF671YYY.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF836ILC bam unfiltered alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 1248798984 ENCODE Processing Pipeline ab2edf2fc4c85f5d12c81bf817aa6617 https://www.encodeproject.org/files/ENCFF836ILC/@@download/ENCFF836ILC.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF679LLO bam unfiltered alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 1204916507 ENCODE Processing Pipeline 639be99ab90e9d38c9db4eb89aa4cf95 https://www.encodeproject.org/files/ENCFF679LLO/@@download/ENCFF679LLO.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF464ZPC bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 864620000 ENCODE Processing Pipeline a92e2b5ebdcfcb46e7a947c387c931a8 https://www.encodeproject.org/files/ENCFF464ZPC/@@download/ENCFF464ZPC.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF039PBK bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 829916391 ENCODE Processing Pipeline 3f762d3d24129708c0728da1ca245b69 https://www.encodeproject.org/files/ENCFF039PBK/@@download/ENCFF039PBK.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF473UZT bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 377063707 ENCODE Processing Pipeline 098886ce0455791761af0218e63ae567 https://www.encodeproject.org/files/ENCFF473UZT/@@download/ENCFF473UZT.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF179SMD bed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 5181326 ENCODE Processing Pipeline 1267c50169ee45fea9d6bf90ac74321f https://www.encodeproject.org/files/ENCFF179SMD/@@download/ENCFF179SMD.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF685PLR bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 317301536 ENCODE Processing Pipeline 8afa2b1ef7a5f56ac4b345888e92dae7 https://www.encodeproject.org/files/ENCFF685PLR/@@download/ENCFF685PLR.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF978OVE bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 367319881 ENCODE Processing Pipeline 15c0b09158d7ac86c8fbd37dd5ecd0a0 https://www.encodeproject.org/files/ENCFF978OVE/@@download/ENCFF978OVE.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF203JTB bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 255069612 ENCODE Processing Pipeline 04ddbc12d14abcd4d290e2c31a73a16a https://www.encodeproject.org/files/ENCFF203JTB/@@download/ENCFF203JTB.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF661SPC bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 436793374 ENCODE Processing Pipeline 26023d7747701b12bd84c1a7c4e784cb https://www.encodeproject.org/files/ENCFF661SPC/@@download/ENCFF661SPC.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF132AEN bigBed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF934ACG 10864936 ENCODE Processing Pipeline bdbe49d60873d3fd7a095be105974082 https://www.encodeproject.org/files/ENCFF132AEN/@@download/ENCFF132AEN.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF459NLJ bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 264679390 ENCODE Processing Pipeline 845fa59253d82bdd825890a59e7b2ccd https://www.encodeproject.org/files/ENCFF459NLJ/@@download/ENCFF459NLJ.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF934ACG bed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 5090017 ENCODE Processing Pipeline c56cde087a2d8ab8d6b5c5ea6d1b55fd https://www.encodeproject.org/files/ENCFF934ACG/@@download/ENCFF934ACG.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF445WGT bed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 5756267 ENCODE Processing Pipeline 0699b810072edc8131e34201f84ebc9a https://www.encodeproject.org/files/ENCFF445WGT/@@download/ENCFF445WGT.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF775IPY bigBed narrowPeak conservative idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF843CQM 2216368 ENCODE Processing Pipeline a902de514270438b53001ffd24ae9a15 https://www.encodeproject.org/files/ENCFF775IPY/@@download/ENCFF775IPY.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF110SCV bigBed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF179SMD 10943369 ENCODE Processing Pipeline e0c1a2a5b8ca9f766a3fba5f426e32f7 https://www.encodeproject.org/files/ENCFF110SCV/@@download/ENCFF110SCV.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF843CQM bed narrowPeak conservative idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF179SMD, ENCFF445WGT, ENCFF547MET, ENCFF934ACG 1127701 ENCODE Processing Pipeline 2ac9df70795bc04c653ce8c48d73a060 https://www.encodeproject.org/files/ENCFF843CQM/@@download/ENCFF843CQM.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF074DVX bed narrowPeak optimal idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF179SMD, ENCFF445WGT, ENCFF547MET, ENCFF934ACG 1173213 ENCODE Processing Pipeline c94fd16c74a71bbc5845c38311107108 https://www.encodeproject.org/files/ENCFF074DVX/@@download/ENCFF074DVX.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF809UGV bigBed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF445WGT 11164834 ENCODE Processing Pipeline ed7cb2701e3d5febb407751fd77d644f https://www.encodeproject.org/files/ENCFF809UGV/@@download/ENCFF809UGV.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF787HQO bigBed narrowPeak optimal idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF074DVX 2278621 ENCODE Processing Pipeline 07b2833df3c0e7778f9adef71c61f6f3 https://www.encodeproject.org/files/ENCFF787HQO/@@download/ENCFF787HQO.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity NTR biosample, biological replicates with identical biosample ENCFF001LNI bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LNT 375067465 Bing Ren, UCSD 0589072114913501918356f5b55490f8 https://www.encodeproject.org/files/ENCFF001LNI/@@download/ENCFF001LNI.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LNK bigBed broadPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAO 479362 Bing Ren, UCSD 63720ee09bef38cefb496ed65a10e3c1 https://www.encodeproject.org/files/ENCFF001LNK/@@download/ENCFF001LNK.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LNL bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LNS 376392816 Bing Ren, UCSD e8a4452954df6e5fb34946dd8d36c8eb https://www.encodeproject.org/files/ENCFF001LNL/@@download/ENCFF001LNL.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LNM bigWig signal ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNI, ENCFF001LNL 58594405 Bing Ren, UCSD c611ddf16528e1706fcaaf7fe555895a https://www.encodeproject.org/files/ENCFF001LNM/@@download/ENCFF001LNM.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LNS fastq reads ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 880486987 Bing Ren, UCSD 44dd98606d96b8baf6c672f64df17c97 https://www.encodeproject.org/files/ENCFF001LNS/@@download/ENCFF001LNS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LNT fastq reads ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 870712159 Bing Ren, UCSD 358761a2b5d436ad8f2793879ae933e6 https://www.encodeproject.org/files/ENCFF001LNT/@@download/ENCFF001LNT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001YAO bed broadPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNI, ENCFF001LNL 338933 Bing Ren, UCSD 1ad12ced14c54ca786c243175745ea7d https://www.encodeproject.org/files/ENCFF001YAO/@@download/ENCFF001YAO.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF864IVP bam unfiltered alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 936384002 ENCODE Processing Pipeline 6f77325a8a67518136f68daaa8efaa3b https://www.encodeproject.org/files/ENCFF864IVP/@@download/ENCFF864IVP.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF554XVK bam unfiltered alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 908493499 ENCODE Processing Pipeline f3b42ad9d6e5afa837e29d2be4fab114 https://www.encodeproject.org/files/ENCFF554XVK/@@download/ENCFF554XVK.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF597HPS bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 382783589 ENCODE Processing Pipeline ee7679aba57565384a9287ebcb8e687b https://www.encodeproject.org/files/ENCFF597HPS/@@download/ENCFF597HPS.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF654LDN bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 353968665 ENCODE Processing Pipeline 40a133f777ed535db675c746eddcfcdd https://www.encodeproject.org/files/ENCFF654LDN/@@download/ENCFF654LDN.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF168RMI bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 136308262 ENCODE Processing Pipeline 460c9eeaf62cf77c5a779d39931c0196 https://www.encodeproject.org/files/ENCFF168RMI/@@download/ENCFF168RMI.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF367LMD bed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 2073420 ENCODE Processing Pipeline e26c087a0afaad67ce0f950d21359bfc https://www.encodeproject.org/files/ENCFF367LMD/@@download/ENCFF367LMD.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF967TRS bed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 1691191 ENCODE Processing Pipeline 59f06ef9aa1f9d701fdf508e24767b85 https://www.encodeproject.org/files/ENCFF967TRS/@@download/ENCFF967TRS.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF695XKZ bed narrowPeak conservative idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF367LMD, ENCFF547MET, ENCFF678KWQ, ENCFF967TRS 427494 ENCODE Processing Pipeline bda6dc1e2f0afd65f75f8a97ed5a69c6 https://www.encodeproject.org/files/ENCFF695XKZ/@@download/ENCFF695XKZ.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF678KWQ bed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 2168111 ENCODE Processing Pipeline dd1256d9fd84bd087f77942eb7cf27ff https://www.encodeproject.org/files/ENCFF678KWQ/@@download/ENCFF678KWQ.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF008AYP bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 238227314 ENCODE Processing Pipeline c2c7bf3ab901ca117688a7b20805fed1 https://www.encodeproject.org/files/ENCFF008AYP/@@download/ENCFF008AYP.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF176AHK bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 120813518 ENCODE Processing Pipeline da5032cc03fa2f2ac92d5a92beaa7c42 https://www.encodeproject.org/files/ENCFF176AHK/@@download/ENCFF176AHK.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF870YTE bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 240545943 ENCODE Processing Pipeline 893441dc9d6a74d103bfebeb7578733b https://www.encodeproject.org/files/ENCFF870YTE/@@download/ENCFF870YTE.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF538KBR bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 229026468 ENCODE Processing Pipeline 24bfc3b08a1b4f33b5d9d09745e75db3 https://www.encodeproject.org/files/ENCFF538KBR/@@download/ENCFF538KBR.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF575GVY bigBed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF678KWQ 4690753 ENCODE Processing Pipeline 6a6ffe8c4245a46d22636d192585b8c6 https://www.encodeproject.org/files/ENCFF575GVY/@@download/ENCFF575GVY.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF634XVK bigBed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF367LMD 4331148 ENCODE Processing Pipeline bf3a59d4bac3c75db56a79e7b57e565f https://www.encodeproject.org/files/ENCFF634XVK/@@download/ENCFF634XVK.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF787KIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF695XKZ 854411 ENCODE Processing Pipeline df74c7a41347b87db9c1896ab7e9ef09 https://www.encodeproject.org/files/ENCFF787KIM/@@download/ENCFF787KIM.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF605YVN bed narrowPeak optimal idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF367LMD, ENCFF547MET, ENCFF678KWQ, ENCFF967TRS 488435 ENCODE Processing Pipeline 2425e89fc649dea77d09fe3ed033bd3e https://www.encodeproject.org/files/ENCFF605YVN/@@download/ENCFF605YVN.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF171COP bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 196445285 ENCODE Processing Pipeline 356c1f28182b9612cbac9ef585a3eaaa https://www.encodeproject.org/files/ENCFF171COP/@@download/ENCFF171COP.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF826REH bigBed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF967TRS 3968024 ENCODE Processing Pipeline 6102292b8c43ba0e66d26e064a6b6cb0 https://www.encodeproject.org/files/ENCFF826REH/@@download/ENCFF826REH.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF210RWO bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF605YVN 946650 ENCODE Processing Pipeline ae8b344f6e069b202cb0945655aab06c https://www.encodeproject.org/files/ENCFF210RWO/@@download/ENCFF210RWO.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LHP bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIB 285853487 Bing Ren, UCSD 0b7d4ee465831e5623f9c70f71b95b89 https://www.encodeproject.org/files/ENCFF001LHP/@@download/ENCFF001LHP.bam mm9 released low read length, borderline replicate concordance insufficient read depth ENCFF001LHQ bigBed broadPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001XZZ 209600 Bing Ren, UCSD ba8848859b05a8330d6bcdff3ac4b348 https://www.encodeproject.org/files/ENCFF001LHQ/@@download/ENCFF001LHQ.bigBed mm9 released low read length, borderline replicate concordance insufficient read depth ENCFF001LHR bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LHZ 349207520 Bing Ren, UCSD 43b486694184af679a0f6a31355fe1a3 https://www.encodeproject.org/files/ENCFF001LHR/@@download/ENCFF001LHR.bam mm9 released low read length, borderline replicate concordance insufficient read depth ENCFF001LHS bigWig signal ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHP, ENCFF001LHR 58933309 Bing Ren, UCSD 77251fc365230099cc7419997835015a https://www.encodeproject.org/files/ENCFF001LHS/@@download/ENCFF001LHS.bigWig mm9 released low read length, borderline replicate concordance insufficient read depth ENCFF001LHZ fastq reads ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 338545330 Bing Ren, UCSD c0ecd430586e0d9cced0ff16f723d705 https://www.encodeproject.org/files/ENCFF001LHZ/@@download/ENCFF001LHZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released low read length, borderline replicate concordance insufficient read depth ENCFF001LIB fastq reads ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 798656964 Bing Ren, UCSD c0bcd486e0fa66d7e27754f47495d2c1 https://www.encodeproject.org/files/ENCFF001LIB/@@download/ENCFF001LIB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released low read length, borderline replicate concordance insufficient read depth ENCFF001XZZ bed broadPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHP, ENCFF001LHR 105716 Bing Ren, UCSD 5496eb2b7b0bb33568a7cb293fbe28cd https://www.encodeproject.org/files/ENCFF001XZZ/@@download/ENCFF001XZZ.bed.gz mm9 released low read length, borderline replicate concordance insufficient read depth ENCFF121HGN bam unfiltered alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHZ, ENCFF018NEO 392944117 ENCODE Processing Pipeline 09b1e9a856fff47a5c80a0ff8ceca2e6 https://www.encodeproject.org/files/ENCFF121HGN/@@download/ENCFF121HGN.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF962THR bam unfiltered alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIB, ENCFF018NEO 816972155 ENCODE Processing Pipeline 728b40b9bf86e22814a81de35fbc782a https://www.encodeproject.org/files/ENCFF962THR/@@download/ENCFF962THR.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF148NIG bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHZ, ENCFF018NEO 239460877 ENCODE Processing Pipeline 390d9114197bd8c5a3d3cfc3a85791d3 https://www.encodeproject.org/files/ENCFF148NIG/@@download/ENCFF148NIG.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF341KOD bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIB, ENCFF018NEO 276369068 ENCODE Processing Pipeline cb9699668e7651c07f140f29eec0193c https://www.encodeproject.org/files/ENCFF341KOD/@@download/ENCFF341KOD.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF500JKB bigWig fold change over control ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF341KOD, ENCFF389ARL 111287279 ENCODE Processing Pipeline 4791c5823d7e208c99d5967fa1cff2a5 https://www.encodeproject.org/files/ENCFF500JKB/@@download/ENCFF500JKB.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF550YDF bigWig fold change over control ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF148NIG, ENCFF389ARL 111625718 ENCODE Processing Pipeline 4700e6ced8f7b7c52db081c33be0ab1d https://www.encodeproject.org/files/ENCFF550YDF/@@download/ENCFF550YDF.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF625PME bigWig fold change over control ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF148NIG, ENCFF341KOD, ENCFF389ARL 198647603 ENCODE Processing Pipeline 33ff406c6a071bfcf35983840bfd61a9 https://www.encodeproject.org/files/ENCFF625PME/@@download/ENCFF625PME.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF260NKO bigWig signal p-value ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF341KOD, ENCFF389ARL 221366918 ENCODE Processing Pipeline ec4a944ef930e8d0e436fb9d8bb4a985 https://www.encodeproject.org/files/ENCFF260NKO/@@download/ENCFF260NKO.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF462YFZ bigWig signal p-value ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF148NIG, ENCFF341KOD, ENCFF389ARL 284833342 ENCODE Processing Pipeline 12d690ea630003b462c1e3b594750bdf https://www.encodeproject.org/files/ENCFF462YFZ/@@download/ENCFF462YFZ.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF245CWG bed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF148NIG, ENCFF389ARL 1338099 ENCODE Processing Pipeline ed95e62d1b0843805987b1403cfa1d8d https://www.encodeproject.org/files/ENCFF245CWG/@@download/ENCFF245CWG.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF882ZPE bigWig signal p-value ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF148NIG, ENCFF389ARL 300078593 ENCODE Processing Pipeline f4c174ac8a3cb60a5e9a9c96f583b2cc https://www.encodeproject.org/files/ENCFF882ZPE/@@download/ENCFF882ZPE.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF161DMN bed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF341KOD, ENCFF389ARL 2681240 ENCODE Processing Pipeline 09f8865134b6d07242d7096811eb2886 https://www.encodeproject.org/files/ENCFF161DMN/@@download/ENCFF161DMN.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF084NYP bed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF148NIG, ENCFF341KOD, ENCFF389ARL 4955846 ENCODE Processing Pipeline 225588e4671204393ea4a9057d2651ec https://www.encodeproject.org/files/ENCFF084NYP/@@download/ENCFF084NYP.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF701QVZ bigBed narrowPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF084NYP 10523540 ENCODE Processing Pipeline 9914adfff7574bfb7b911550c0d89bd4 https://www.encodeproject.org/files/ENCFF701QVZ/@@download/ENCFF701QVZ.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF250DWD bigBed narrowPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DMN 6477412 ENCODE Processing Pipeline 7749d577347a0e6c13e3035faf3798f3 https://www.encodeproject.org/files/ENCFF250DWD/@@download/ENCFF250DWD.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF029GRM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF788VGC 742922 ENCODE Processing Pipeline 9f8d26365c09f1b0eaa8630e24994512 https://www.encodeproject.org/files/ENCFF029GRM/@@download/ENCFF029GRM.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF283DIO bigBed narrowPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF245CWG 2838361 ENCODE Processing Pipeline 37351309f1b62fa5eff2f45207643382 https://www.encodeproject.org/files/ENCFF283DIO/@@download/ENCFF283DIO.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF877CUQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF310XZO 652518 ENCODE Processing Pipeline 4b8b9f03451ecfa55a889802efa2fb2d https://www.encodeproject.org/files/ENCFF877CUQ/@@download/ENCFF877CUQ.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF310XZO bed narrowPeak conservative idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF084NYP, ENCFF161DMN, ENCFF245CWG, ENCFF547MET 269783 ENCODE Processing Pipeline 4486a9515328438736f64e9113ad4999 https://www.encodeproject.org/files/ENCFF310XZO/@@download/ENCFF310XZO.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF788VGC bed narrowPeak optimal idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF084NYP, ENCFF161DMN, ENCFF245CWG, ENCFF547MET 325999 ENCODE Processing Pipeline 63a89f00daa1e6e86535addd162cff41 https://www.encodeproject.org/files/ENCFF788VGC/@@download/ENCFF788VGC.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF001MNW bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MOE 1866887794 Ross Hardison, PennState e3553169cfb849ece1cead4962da2eae https://www.encodeproject.org/files/ENCFF001MNW/@@download/ENCFF001MNW.bam mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MNX bigBed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEW 45085 Ross Hardison, PennState 99966135a5d42a222ef819ac616263e7 https://www.encodeproject.org/files/ENCFF001MNX/@@download/ENCFF001MNX.bigBed mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MNY bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MOM 6170103021 Ross Hardison, PennState 8ea9db71f247b72fa9f46efc2d928170 https://www.encodeproject.org/files/ENCFF001MNY/@@download/ENCFF001MNY.bam mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MNZ bigBed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEY 42012 Ross Hardison, PennState daaf3ea2c8b9ea30450a64519488a6e3 https://www.encodeproject.org/files/ENCFF001MNZ/@@download/ENCFF001MNZ.bigBed mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOA bigBed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEZ 48512 Ross Hardison, PennState 7ed6108307750d47c9001c197c492afb https://www.encodeproject.org/files/ENCFF001MOA/@@download/ENCFF001MOA.bigBed mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOB bigWig signal ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2552627448 Ross Hardison, PennState 024bf467aa54974ba5681b3a77ee4657 https://www.encodeproject.org/files/ENCFF001MOB/@@download/ENCFF001MOB.bigWig mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MOC bigWig signal ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 4942453185 Ross Hardison, PennState d4ee235c7a4b67316a5a4dfc1ae128eb https://www.encodeproject.org/files/ENCFF001MOC/@@download/ENCFF001MOC.bigWig mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MOD bigWig signal ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 5522560497 Ross Hardison, PennState 314e8c959d6beb5a6c312439232b425b https://www.encodeproject.org/files/ENCFF001MOD/@@download/ENCFF001MOD.bigWig mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MOE fastq reads ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1462106049 Ross Hardison, PennState 1b6eb374e03692c7d3dd31e4d472727f https://www.encodeproject.org/files/ENCFF001MOE/@@download/ENCFF001MOE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, mixed read lengths, inconsistent control read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001MOM fastq reads ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 48 single-ended 5410047752 Ross Hardison, PennState da25b76b3d6485473a134f5959becbe2 https://www.encodeproject.org/files/ENCFF001MOM/@@download/ENCFF001MOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MPG/ released low read length, mixed read lengths, inconsistent control read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001YEW bed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1570 Ross Hardison, PennState aa63041d295c60462b95ac0a4edbb724 https://www.encodeproject.org/files/ENCFF001YEW/@@download/ENCFF001YEW.bed.gz mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YEY bed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4382 Ross Hardison, PennState 664dde7a080bfc508387c207e53d59ee https://www.encodeproject.org/files/ENCFF001YEY/@@download/ENCFF001YEY.bed.gz mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YEZ bed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2988 Ross Hardison, PennState 5926f716b44a2839feb3966053ad5603 https://www.encodeproject.org/files/ENCFF001YEZ/@@download/ENCFF001YEZ.bed.gz mm9 archived low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF278BZL bam unfiltered alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOE, ENCFF018NEO 1785707033 ENCODE Processing Pipeline 25081b94f9347cbc42b71848a75ba972 https://www.encodeproject.org/files/ENCFF278BZL/@@download/ENCFF278BZL.bam mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF882VKU bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOE, ENCFF018NEO 1243830020 ENCODE Processing Pipeline 769466936a01a64c0358cf6db3dab3db https://www.encodeproject.org/files/ENCFF882VKU/@@download/ENCFF882VKU.bam mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF814FQW bam unfiltered alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOM, ENCFF018NEO 5461425540 ENCODE Processing Pipeline 4848821b2775f4fe689c4209cfb90acf https://www.encodeproject.org/files/ENCFF814FQW/@@download/ENCFF814FQW.bam mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF951IPP bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOM, ENCFF018NEO 3507576585 ENCODE Processing Pipeline 3f7172bd8823d6cf6986e411dee9c1ad https://www.encodeproject.org/files/ENCFF951IPP/@@download/ENCFF951IPP.bam mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF488EVU bigWig signal p-value ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF882VKU, ENCFF984QUA 970091671 ENCODE Processing Pipeline 6774f7948651e66d5ec5e94e71eed1c1 https://www.encodeproject.org/files/ENCFF488EVU/@@download/ENCFF488EVU.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF869JKR bigWig signal p-value ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF951IPP, ENCFF984QUA 1533931844 ENCODE Processing Pipeline 892b18eb32e4351a490fbc11ea4e91a5 https://www.encodeproject.org/files/ENCFF869JKR/@@download/ENCFF869JKR.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF327PYK bigWig signal p-value ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF882VKU, ENCFF951IPP, ENCFF984QUA 1472958978 ENCODE Processing Pipeline c9237d32a6c127daa3bb527cb5a9bcb5 https://www.encodeproject.org/files/ENCFF327PYK/@@download/ENCFF327PYK.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF776XID bigWig fold change over control ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF882VKU, ENCFF984QUA 966768134 ENCODE Processing Pipeline 3084428b29da581745be322169d4d2da https://www.encodeproject.org/files/ENCFF776XID/@@download/ENCFF776XID.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF949KZM bigWig fold change over control ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF951IPP, ENCFF984QUA 1633362248 ENCODE Processing Pipeline b14f7e5e78dc1d63b722c1d26bfbd3b7 https://www.encodeproject.org/files/ENCFF949KZM/@@download/ENCFF949KZM.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF716MDN bed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF951IPP, ENCFF984QUA 6984931 ENCODE Processing Pipeline 218d794ce36f076dd808890d17340d7d https://www.encodeproject.org/files/ENCFF716MDN/@@download/ENCFF716MDN.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF193XWY bed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF882VKU, ENCFF984QUA 6065493 ENCODE Processing Pipeline 57c28888a23c78307e1843cfd045bbd9 https://www.encodeproject.org/files/ENCFF193XWY/@@download/ENCFF193XWY.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF860JAB bigWig fold change over control ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF882VKU, ENCFF951IPP, ENCFF984QUA 1790133498 ENCODE Processing Pipeline f5049576d675004bdc4e908b15eeed0b https://www.encodeproject.org/files/ENCFF860JAB/@@download/ENCFF860JAB.bigWig mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF355HZG bigBed narrowPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF716MDN 11187054 ENCODE Processing Pipeline 570eae413a42c68415a68b4d5cbc1624 https://www.encodeproject.org/files/ENCFF355HZG/@@download/ENCFF355HZG.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF463UEF bigBed narrowPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF327RPY 11129962 ENCODE Processing Pipeline f6e0cb623429ca76e08cb0097bc2576d https://www.encodeproject.org/files/ENCFF463UEF/@@download/ENCFF463UEF.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF237TCV bed narrowPeak optimal idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF193XWY, ENCFF327RPY, ENCFF547MET, ENCFF716MDN 951 ENCODE Processing Pipeline d2d8ad09a8285b91c3b020978fb39c95 https://www.encodeproject.org/files/ENCFF237TCV/@@download/ENCFF237TCV.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF327RPY bed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF882VKU, ENCFF951IPP, ENCFF984QUA 7229653 ENCODE Processing Pipeline 0d35dd044a65f856a6979984055aa9b8 https://www.encodeproject.org/files/ENCFF327RPY/@@download/ENCFF327RPY.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF175YPS bigBed narrowPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF193XWY 11418021 ENCODE Processing Pipeline b95ff3848cbe84c2b281f5f67a8e6c02 https://www.encodeproject.org/files/ENCFF175YPS/@@download/ENCFF175YPS.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF923TCW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF237TCV 35281 ENCODE Processing Pipeline e2e5d1537e35c28af98c83491a67e7d8 https://www.encodeproject.org/files/ENCFF923TCW/@@download/ENCFF923TCW.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF323BOO bed narrowPeak conservative idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF193XWY, ENCFF327RPY, ENCFF547MET, ENCFF716MDN 605 ENCODE Processing Pipeline 9105311203b93f22afbb77612eec6da7 https://www.encodeproject.org/files/ENCFF323BOO/@@download/ENCFF323BOO.bed.gz mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF958QIF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF323BOO 34415 ENCODE Processing Pipeline 79ae1e34a9e4d78b319d1a8dc311563f https://www.encodeproject.org/files/ENCFF958QIF/@@download/ENCFF958QIF.bigBed mm10 released low read length, mixed read lengths, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001LQL bigBed broadPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAX 390596 Bing Ren, UCSD 490bd4c874c6fd1a1ecc4eb0288ad842 https://www.encodeproject.org/files/ENCFF001LQL/@@download/ENCFF001LQL.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LQM bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQU 695114168 Bing Ren, UCSD 99716221ccf18ebdaff804d3eb8b0f28 https://www.encodeproject.org/files/ENCFF001LQM/@@download/ENCFF001LQM.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LQN bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQW 1409643306 Bing Ren, UCSD fa4559c386ca1cf2b6759806fc268f37 https://www.encodeproject.org/files/ENCFF001LQN/@@download/ENCFF001LQN.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LQP bigWig signal ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LQM, ENCFF001LQN 64597442 Bing Ren, UCSD 40cf2bece5fa74c2162527542204e9e6 https://www.encodeproject.org/files/ENCFF001LQP/@@download/ENCFF001LQP.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LQU fastq reads ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 977574900 Bing Ren, UCSD 3d4ccd017c64d2c57bd17942ab017c48 https://www.encodeproject.org/files/ENCFF001LQU/@@download/ENCFF001LQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LQW fastq reads ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1852567088 Bing Ren, UCSD 17d6a24edc41c408b0076f9eac69b20e https://www.encodeproject.org/files/ENCFF001LQW/@@download/ENCFF001LQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001YAX bed broadPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LQM, ENCFF001LQN 280424 Bing Ren, UCSD 8812f0c83a9883710c034b1e4a2f76d3 https://www.encodeproject.org/files/ENCFF001YAX/@@download/ENCFF001YAX.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF925AHK bam unfiltered alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQU, ENCFF018NEO 1043021361 ENCODE Processing Pipeline a7567297eb50d5cd562b01df3d510b5c https://www.encodeproject.org/files/ENCFF925AHK/@@download/ENCFF925AHK.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF857JHL bam unfiltered alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQW, ENCFF018NEO 2062788616 ENCODE Processing Pipeline 9b5c31c560778ccfdde853402176d0df https://www.encodeproject.org/files/ENCFF857JHL/@@download/ENCFF857JHL.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF373MQG bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQU, ENCFF018NEO 543166914 ENCODE Processing Pipeline 67d87bcdc3f8d10a09771a801059a7bc https://www.encodeproject.org/files/ENCFF373MQG/@@download/ENCFF373MQG.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF894XUQ bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQW, ENCFF018NEO 1412738132 ENCODE Processing Pipeline 8accab6420c95f2dbd6a346bcce20a0c https://www.encodeproject.org/files/ENCFF894XUQ/@@download/ENCFF894XUQ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF601NUV bigWig signal p-value ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF242QZL, ENCFF769FTV, ENCFF894XUQ 697286740 ENCODE Processing Pipeline e103d76a6dc61c7b6bf9e57d4839671f https://www.encodeproject.org/files/ENCFF601NUV/@@download/ENCFF601NUV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF316WQV bigWig signal p-value ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF373MQG, ENCFF769FTV 286835357 ENCODE Processing Pipeline ee1cf8b51bfaa6c5e6b9661de1f81eb9 https://www.encodeproject.org/files/ENCFF316WQV/@@download/ENCFF316WQV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF184SYO bigWig signal p-value ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF242QZL, ENCFF373MQG, ENCFF769FTV, ENCFF894XUQ 769938556 ENCODE Processing Pipeline 5eba9a237d9842870c2ed0902b79f084 https://www.encodeproject.org/files/ENCFF184SYO/@@download/ENCFF184SYO.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF656GAL bigWig fold change over control ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF373MQG, ENCFF769FTV 280438118 ENCODE Processing Pipeline c3d27adca5cffe4acaf60c83ccb8e59c https://www.encodeproject.org/files/ENCFF656GAL/@@download/ENCFF656GAL.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF873JPZ bigWig fold change over control ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF242QZL, ENCFF769FTV, ENCFF894XUQ 607642681 ENCODE Processing Pipeline 066240c01d1caf2b3c4c5fa63317f3ba https://www.encodeproject.org/files/ENCFF873JPZ/@@download/ENCFF873JPZ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF820TWT bigWig fold change over control ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF242QZL, ENCFF373MQG, ENCFF769FTV, ENCFF894XUQ 786064135 ENCODE Processing Pipeline 412f2153a62a47cda852aa54ee2595df https://www.encodeproject.org/files/ENCFF820TWT/@@download/ENCFF820TWT.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF687OPD bed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF373MQG, ENCFF769FTV 5790051 ENCODE Processing Pipeline 70031c113d05ac09afa8df87b5f3857e https://www.encodeproject.org/files/ENCFF687OPD/@@download/ENCFF687OPD.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF968EUZ bed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF242QZL, ENCFF769FTV, ENCFF894XUQ 6502712 ENCODE Processing Pipeline 9d9e07412904f34bbd51460e5f9e6cf0 https://www.encodeproject.org/files/ENCFF968EUZ/@@download/ENCFF968EUZ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF402RSB bed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF242QZL, ENCFF373MQG, ENCFF769FTV, ENCFF894XUQ 7022644 ENCODE Processing Pipeline bdc9d613f4f6011678423da0555bec30 https://www.encodeproject.org/files/ENCFF402RSB/@@download/ENCFF402RSB.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF529TNO bigBed narrowPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF687OPD 12888713 ENCODE Processing Pipeline ae8e2bb1fda5a16aa381cfe89d595f12 https://www.encodeproject.org/files/ENCFF529TNO/@@download/ENCFF529TNO.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF918VSQ bed narrowPeak conservative idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF402RSB, ENCFF547MET, ENCFF687OPD, ENCFF968EUZ 227845 ENCODE Processing Pipeline a4425a0de806176fe208f5f13284d0ac https://www.encodeproject.org/files/ENCFF918VSQ/@@download/ENCFF918VSQ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF277DEJ bigBed narrowPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF968EUZ 13094679 ENCODE Processing Pipeline 2a41eca32f485cae9d642d717ee80baf https://www.encodeproject.org/files/ENCFF277DEJ/@@download/ENCFF277DEJ.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF727ZTX bigBed narrowPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF402RSB 12927444 ENCODE Processing Pipeline 87fb78c45deb881d821dd1a3fead5513 https://www.encodeproject.org/files/ENCFF727ZTX/@@download/ENCFF727ZTX.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF853DWK bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF918VSQ 450308 ENCODE Processing Pipeline 8e1ea04b8790fe4df59383940a918afa https://www.encodeproject.org/files/ENCFF853DWK/@@download/ENCFF853DWK.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF474YPG bed narrowPeak optimal idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF402RSB, ENCFF547MET, ENCFF687OPD, ENCFF968EUZ 268169 ENCODE Processing Pipeline ed45219ec5b2e5f0ed7173080aa14ff9 https://www.encodeproject.org/files/ENCFF474YPG/@@download/ENCFF474YPG.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF666OHT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF474YPG 615457 ENCODE Processing Pipeline 46c8daec1aa8edd0e5cba08db58a3165 https://www.encodeproject.org/files/ENCFF666OHT/@@download/ENCFF666OHT.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LHC bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LHO 510852989 Bing Ren, UCSD f475f988145b2f4cadd02da622a7040f https://www.encodeproject.org/files/ENCFF001LHC/@@download/ENCFF001LHC.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LHE bigBed broadPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001XZY 468088 Bing Ren, UCSD d0c5135c37165b66931387ff0d677fd1 https://www.encodeproject.org/files/ENCFF001LHE/@@download/ENCFF001LHE.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LHG bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LHN 904441670 Bing Ren, UCSD 879c8c637c30b8d56cd504ff368e4df5 https://www.encodeproject.org/files/ENCFF001LHG/@@download/ENCFF001LHG.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LHH bigWig signal ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHC, ENCFF001LHG 84447489 Bing Ren, UCSD 71de0ca73c5707e7e2fa93f6e5fd1a7d https://www.encodeproject.org/files/ENCFF001LHH/@@download/ENCFF001LHH.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LHN fastq reads ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 996724043 Bing Ren, UCSD 487aad5c59ead18bcd561780a245dc11 https://www.encodeproject.org/files/ENCFF001LHN/@@download/ENCFF001LHN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LHO fastq reads ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 908087695 Bing Ren, UCSD fc28d07269c86cceea6530810ac41489 https://www.encodeproject.org/files/ENCFF001LHO/@@download/ENCFF001LHO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001XZY bed broadPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHC, ENCFF001LHG 328394 Bing Ren, UCSD 157af29dd3668983bfbbbe9234aaa3e8 https://www.encodeproject.org/files/ENCFF001XZY/@@download/ENCFF001XZY.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF194SKC bam unfiltered alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 1141653183 ENCODE Processing Pipeline 967d0825aee0e4d7a537a32340034e72 https://www.encodeproject.org/files/ENCFF194SKC/@@download/ENCFF194SKC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF782HYA bam unfiltered alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 935745334 ENCODE Processing Pipeline 6de40ee6ad4e55ac21c7dd8ff450b656 https://www.encodeproject.org/files/ENCFF782HYA/@@download/ENCFF782HYA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF667KDK bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 390827538 ENCODE Processing Pipeline 46a09226371fc8b456d154ca69e3ff3d https://www.encodeproject.org/files/ENCFF667KDK/@@download/ENCFF667KDK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF661ZQB bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 662499534 ENCODE Processing Pipeline aef33f2133a7a32cc9c4534f001e2dd8 https://www.encodeproject.org/files/ENCFF661ZQB/@@download/ENCFF661ZQB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF344JKN bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 285836481 ENCODE Processing Pipeline 1dbffd98174a928e9c880f93a92ae9a7 https://www.encodeproject.org/files/ENCFF344JKN/@@download/ENCFF344JKN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF867MOQ bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 424924278 ENCODE Processing Pipeline dd95043693d6a3eb40a93b39e1df4883 https://www.encodeproject.org/files/ENCFF867MOQ/@@download/ENCFF867MOQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF049OXZ bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 317919905 ENCODE Processing Pipeline dfe2a89c98c819da616c10c0b80405b0 https://www.encodeproject.org/files/ENCFF049OXZ/@@download/ENCFF049OXZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF648MAL bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 152640249 ENCODE Processing Pipeline 1a980b9543fde0811ed4214a496e71f8 https://www.encodeproject.org/files/ENCFF648MAL/@@download/ENCFF648MAL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF447NGZ bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 337515657 ENCODE Processing Pipeline 2c5e83a8c3f4a9210b63ed0917855b0a https://www.encodeproject.org/files/ENCFF447NGZ/@@download/ENCFF447NGZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF558UQC bed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 2912033 ENCODE Processing Pipeline 93896b0437578421d1af6130a2a7f990 https://www.encodeproject.org/files/ENCFF558UQC/@@download/ENCFF558UQC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF773UWB bigBed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF197CSD 10628736 ENCODE Processing Pipeline a01976b13022ba2a83a2cbbae4f34e5e https://www.encodeproject.org/files/ENCFF773UWB/@@download/ENCFF773UWB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF216CWE bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 384490107 ENCODE Processing Pipeline 0092316a041078ad5b085ede99162e33 https://www.encodeproject.org/files/ENCFF216CWE/@@download/ENCFF216CWE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF197CSD bed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 4213983 ENCODE Processing Pipeline 3fcf24b2d81019ac33a68dd019ca1cb1 https://www.encodeproject.org/files/ENCFF197CSD/@@download/ENCFF197CSD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF940XRJ bigBed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF863QLD 11280592 ENCODE Processing Pipeline 021cff9d5799129d654a5af2725da387 https://www.encodeproject.org/files/ENCFF940XRJ/@@download/ENCFF940XRJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF863QLD bed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 4761520 ENCODE Processing Pipeline 5ee4ca85e5152f30d510aee06070629a https://www.encodeproject.org/files/ENCFF863QLD/@@download/ENCFF863QLD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF232GTB bed narrowPeak conservative idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF197CSD, ENCFF547MET, ENCFF558UQC, ENCFF863QLD 332525 ENCODE Processing Pipeline 0e3e73e5367d45fbd51427d5fe80dd0d https://www.encodeproject.org/files/ENCFF232GTB/@@download/ENCFF232GTB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF357KNB bed narrowPeak optimal idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF197CSD, ENCFF547MET, ENCFF558UQC, ENCFF863QLD 529140 ENCODE Processing Pipeline 10b28a33ce515cb97751db98d2e24758 https://www.encodeproject.org/files/ENCFF357KNB/@@download/ENCFF357KNB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF957NCK bigBed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF558UQC 6646285 ENCODE Processing Pipeline 6dc610a5ba5cceb6340c7d38b6f30ced https://www.encodeproject.org/files/ENCFF957NCK/@@download/ENCFF957NCK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF404ARG bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF357KNB 976615 ENCODE Processing Pipeline 0b77b577794bef5f38649e09b0d4edd6 https://www.encodeproject.org/files/ENCFF404ARG/@@download/ENCFF404ARG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF679AST bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF232GTB 693032 ENCODE Processing Pipeline cdc58be6d502ef89d89f3fdb30a9e649 https://www.encodeproject.org/files/ENCFF679AST/@@download/ENCFF679AST.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LST bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LTF 281621714 Bing Ren, UCSD b33d542b605c21f22841308ae934f17c https://www.encodeproject.org/files/ENCFF001LST/@@download/ENCFF001LST.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LSW bigBed broadPeak peaks ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBE 633531 Bing Ren, UCSD 55ca3863ecc04b9d7efb2aa7b13643bb https://www.encodeproject.org/files/ENCFF001LSW/@@download/ENCFF001LSW.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LSY bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTG 736800904 Bing Ren, UCSD 027793c56c06df1cfa5c18600263f3ac https://www.encodeproject.org/files/ENCFF001LSY/@@download/ENCFF001LSY.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LTB bigWig signal ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LST, ENCFF001LSY 65249261 Bing Ren, UCSD 1894edf7a0338c1b9b71a6e0b565d334 https://www.encodeproject.org/files/ENCFF001LTB/@@download/ENCFF001LTB.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LTF fastq reads ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 280421271 Bing Ren, UCSD 9b0813bea40144999f4aba6f2f2b10e2 https://www.encodeproject.org/files/ENCFF001LTF/@@download/ENCFF001LTF.fastq.gz Illumina Genome Analyzer II /files/ENCFF786ODW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LTG fastq reads ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 737402777 Bing Ren, UCSD dbf811d844e64ec9d460b0bdaa25abac https://www.encodeproject.org/files/ENCFF001LTG/@@download/ENCFF001LTG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001YBE bed broadPeak peaks ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LST, ENCFF001LSY 497306 Bing Ren, UCSD 98b652fd83d5bd6d58161679842911af https://www.encodeproject.org/files/ENCFF001YBE/@@download/ENCFF001YBE.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF680JXU bam unfiltered alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 774056190 ENCODE Processing Pipeline 2abb7f8da4ef40cea51423c5d4a80848 https://www.encodeproject.org/files/ENCFF680JXU/@@download/ENCFF680JXU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF419YGX bam unfiltered alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 300093533 ENCODE Processing Pipeline 1d9c2d75299399fd760ea74cf2c64676 https://www.encodeproject.org/files/ENCFF419YGX/@@download/ENCFF419YGX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF670HMJ bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 344478412 ENCODE Processing Pipeline 1deb1953f353f9ce994c66c74766293f https://www.encodeproject.org/files/ENCFF670HMJ/@@download/ENCFF670HMJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF359OGF bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 131584552 ENCODE Processing Pipeline 2695302c830392a04ca60085c410d673 https://www.encodeproject.org/files/ENCFF359OGF/@@download/ENCFF359OGF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001NVC bigWig signal ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NUV, ENCFF001NUX 133035255 Michael Snyder, Stanford 940f6159a01ba428063e0b68286a9af2 https://www.encodeproject.org/files/ENCFF001NVC/@@download/ENCFF001NVC.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NUV bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NUY 402278342 Michael Snyder, Stanford f038cb06024c1c7a32af8919677bab1c https://www.encodeproject.org/files/ENCFF001NUV/@@download/ENCFF001NUV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NUW bigBed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJQ 125484 Michael Snyder, Stanford 4b35f8fd79e2ae5bf777691d839569bd https://www.encodeproject.org/files/ENCFF001NUW/@@download/ENCFF001NUW.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NUX bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NVA 380752912 Michael Snyder, Stanford 4ac23b21f4ba6753ae00bd88bd81515c https://www.encodeproject.org/files/ENCFF001NUX/@@download/ENCFF001NUX.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NUY fastq reads ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 721187461 Michael Snyder, Stanford 8e58d34984e462f782f7334eadce110a https://www.encodeproject.org/files/ENCFF001NUY/@@download/ENCFF001NUY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NVA fastq reads ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 747614593 Michael Snyder, Stanford bdb3d4e602ca12892be793f30df605f0 https://www.encodeproject.org/files/ENCFF001NVA/@@download/ENCFF001NVA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YJQ bed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NUV, ENCFF001NUX 28516 Michael Snyder, Stanford c27af31095366fda83e818f7b2d82f20 https://www.encodeproject.org/files/ENCFF001YJQ/@@download/ENCFF001YJQ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF536XZS bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NUY, ENCFF018NEO 558104343 ENCODE Processing Pipeline 2a01744a664a8d90ec6baf5379130353 https://www.encodeproject.org/files/ENCFF536XZS/@@download/ENCFF536XZS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF859PAZ bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NVA, ENCFF018NEO 487219227 ENCODE Processing Pipeline db92754b42ace5ad7077962b9276d5ad https://www.encodeproject.org/files/ENCFF859PAZ/@@download/ENCFF859PAZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF705BAU bam unfiltered alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NVA, ENCFF018NEO 830219682 ENCODE Processing Pipeline 1b472c0a286fd4b3458a45c6fbcdee5e https://www.encodeproject.org/files/ENCFF705BAU/@@download/ENCFF705BAU.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF822OHA bam unfiltered alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NUY, ENCFF018NEO 836007413 ENCODE Processing Pipeline d7ef77d3422c41d1dbf75dbd39ff6c16 https://www.encodeproject.org/files/ENCFF822OHA/@@download/ENCFF822OHA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF337CWB bigWig signal p-value ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF859PAZ 322113871 ENCODE Processing Pipeline 3b005e1723c006ccdc3ad4c742445451 https://www.encodeproject.org/files/ENCFF337CWB/@@download/ENCFF337CWB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF290IMJ bigWig signal p-value ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS, ENCFF859PAZ 432916003 ENCODE Processing Pipeline 8a0312ebf198a818e9e39fc596728b7b https://www.encodeproject.org/files/ENCFF290IMJ/@@download/ENCFF290IMJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF078GZY bigWig signal p-value ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS 367718383 ENCODE Processing Pipeline 98903fa34bee0e468e40496f149a04f7 https://www.encodeproject.org/files/ENCFF078GZY/@@download/ENCFF078GZY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF396BBC bigWig fold change over control ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS 332891496 ENCODE Processing Pipeline 04d8bb10dbbfe4de0456a000c11d4443 https://www.encodeproject.org/files/ENCFF396BBC/@@download/ENCFF396BBC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF015TNW bigWig fold change over control ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF859PAZ 304961223 ENCODE Processing Pipeline cb5ee9ac77b632046b875ce36530568f https://www.encodeproject.org/files/ENCFF015TNW/@@download/ENCFF015TNW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF369XQN bigWig fold change over control ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS, ENCFF859PAZ 513113285 ENCODE Processing Pipeline 5feeb63a9a0fefdd79e0b69829e5cf67 https://www.encodeproject.org/files/ENCFF369XQN/@@download/ENCFF369XQN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF247AEB bed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS 4406357 ENCODE Processing Pipeline b2dbe258ed1efa7029e6d93c67628c12 https://www.encodeproject.org/files/ENCFF247AEB/@@download/ENCFF247AEB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF344XYS bed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF859PAZ 3832278 ENCODE Processing Pipeline 296db0802c84787435d61a484eec6fd9 https://www.encodeproject.org/files/ENCFF344XYS/@@download/ENCFF344XYS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF448JBQ bigBed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF247AEB 10608282 ENCODE Processing Pipeline 228781d5bce750aeb04be3de2376bcf9 https://www.encodeproject.org/files/ENCFF448JBQ/@@download/ENCFF448JBQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF150XOB bed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS, ENCFF859PAZ 4796196 ENCODE Processing Pipeline 0034d460f80b4eb1cc16128ffbc20476 https://www.encodeproject.org/files/ENCFF150XOB/@@download/ENCFF150XOB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF621KYH bigBed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF344XYS 8192086 ENCODE Processing Pipeline f899991ab6400a3773285d081098ba48 https://www.encodeproject.org/files/ENCFF621KYH/@@download/ENCFF621KYH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF452SZA bigBed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF150XOB 11205233 ENCODE Processing Pipeline 28cff93e490e6cdfb12aa70812ef94a0 https://www.encodeproject.org/files/ENCFF452SZA/@@download/ENCFF452SZA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF579VPA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF646SRQ 127565 ENCODE Processing Pipeline 9531a06f4dc6f0c1bea78495ec85f62c https://www.encodeproject.org/files/ENCFF579VPA/@@download/ENCFF579VPA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF646SRQ bed narrowPeak conservative idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF150XOB, ENCFF247AEB, ENCFF344XYS, ENCFF547MET 43621 ENCODE Processing Pipeline 7f76a0e9a2c2d0addcf1503618796488 https://www.encodeproject.org/files/ENCFF646SRQ/@@download/ENCFF646SRQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF006XAF bed narrowPeak optimal idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF150XOB, ENCFF247AEB, ENCFF344XYS, ENCFF547MET 45946 ENCODE Processing Pipeline 795bf3ba1591336cc40547541f118ee2 https://www.encodeproject.org/files/ENCFF006XAF/@@download/ENCFF006XAF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF869PJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF006XAF 131028 ENCODE Processing Pipeline f61ca4a34471ef1e8934ee6926f3f6cd https://www.encodeproject.org/files/ENCFF869PJO/@@download/ENCFF869PJO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OAM bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001OAO 516894301 Michael Snyder, Stanford 66fa12e585f4ff16143b8c08d3eafbd8 https://www.encodeproject.org/files/ENCFF001OAM/@@download/ENCFF001OAM.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001OAN bigBed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YKJ 608006 Michael Snyder, Stanford 2325d5bd2708a0f2dd38a2c744927440 https://www.encodeproject.org/files/ENCFF001OAN/@@download/ENCFF001OAN.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001OAO fastq reads ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1158858570 Michael Snyder, Stanford 706d63c2935991b192dcf5aa4f1caf6e https://www.encodeproject.org/files/ENCFF001OAO/@@download/ENCFF001OAO.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001OAP bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001OAR 451676517 Michael Snyder, Stanford 4e60be3e4dd24549558cc8fcfc5f672f https://www.encodeproject.org/files/ENCFF001OAP/@@download/ENCFF001OAP.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001OAR fastq reads ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 938018403 Michael Snyder, Stanford f0bb1e61477a2fd98ded691b5f331688 https://www.encodeproject.org/files/ENCFF001OAR/@@download/ENCFF001OAR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001OAT bigWig signal ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OAM, ENCFF001OAP 352731656 Michael Snyder, Stanford dc38d9b4abef33b03609fb1020871956 https://www.encodeproject.org/files/ENCFF001OAT/@@download/ENCFF001OAT.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001YKJ bed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OAM, ENCFF001OAP 292678 Michael Snyder, Stanford b2dcafb7a7bdb7de8f10f7f7d9e891fb https://www.encodeproject.org/files/ENCFF001YKJ/@@download/ENCFF001YKJ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF505MIA bam unfiltered alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OAO, ENCFF018NEO 1259139967 ENCODE Processing Pipeline 9656b6fd1b321f7729999205c3da13b9 https://www.encodeproject.org/files/ENCFF505MIA/@@download/ENCFF505MIA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF266GGY bam unfiltered alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OAR, ENCFF018NEO 1039725572 ENCODE Processing Pipeline e9387cbff6e2c3cec8f2cb5f9a9a0b64 https://www.encodeproject.org/files/ENCFF266GGY/@@download/ENCFF266GGY.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF049EYU bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OAR, ENCFF018NEO 663897338 ENCODE Processing Pipeline a7f724793df140aadfeb3e8d98390f55 https://www.encodeproject.org/files/ENCFF049EYU/@@download/ENCFF049EYU.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF629AKI bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OAO, ENCFF018NEO 742191086 ENCODE Processing Pipeline 5e32c0fa016edf03b1c5279df8916aeb https://www.encodeproject.org/files/ENCFF629AKI/@@download/ENCFF629AKI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF049FJS bigWig fold change over control ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF629AKI 315383736 ENCODE Processing Pipeline a209bd189f8b954b9fde9b6672e6c30f https://www.encodeproject.org/files/ENCFF049FJS/@@download/ENCFF049FJS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF239GHK bigWig signal p-value ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF629AKI 294383678 ENCODE Processing Pipeline 6f73546df0d7a5c620e0c88bb4341735 https://www.encodeproject.org/files/ENCFF239GHK/@@download/ENCFF239GHK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF402LML bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF860QLN 115888 ENCODE Processing Pipeline 9102133a7f87ccefa73b867cf41689e0 https://www.encodeproject.org/files/ENCFF402LML/@@download/ENCFF402LML.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF847VTQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF140WUQ, ENCFF274IPR, ENCFF448VYN, ENCFF547MET 79371 ENCODE Processing Pipeline 97de8795100b982fe1acaabf1b74f139 https://www.encodeproject.org/files/ENCFF847VTQ/@@download/ENCFF847VTQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF274IPR bed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF629AKI 82345 ENCODE Processing Pipeline ca12c341b7341d0119fe64e960ab25e8 https://www.encodeproject.org/files/ENCFF274IPR/@@download/ENCFF274IPR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF894ECY bigBed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF274IPR 241302 ENCODE Processing Pipeline 73ba0c42d3e28d3c2131174856891679 https://www.encodeproject.org/files/ENCFF894ECY/@@download/ENCFF894ECY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF348PND bigBed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF140WUQ 10825108 ENCODE Processing Pipeline f85ba618e2d8a4334bfdc68f8d85af6c https://www.encodeproject.org/files/ENCFF348PND/@@download/ENCFF348PND.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF598XNI bigWig signal p-value ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF049EYU, ENCFF171OVT, ENCFF629AKI 295010989 ENCODE Processing Pipeline 7bb37889a3c9a828bdbd28c094bd27c8 https://www.encodeproject.org/files/ENCFF598XNI/@@download/ENCFF598XNI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF860QLN bed narrowPeak conservative idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF140WUQ, ENCFF274IPR, ENCFF448VYN, ENCFF547MET 33870 ENCODE Processing Pipeline 4f206ab25ac89cd266dbeb4620b5b85c https://www.encodeproject.org/files/ENCFF860QLN/@@download/ENCFF860QLN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF252GSD bigWig signal p-value ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF049EYU, ENCFF171OVT 286412763 ENCODE Processing Pipeline b69a535b7418a845f535dc3c778ac104 https://www.encodeproject.org/files/ENCFF252GSD/@@download/ENCFF252GSD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF668OIS bigWig fold change over control ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF049EYU, ENCFF171OVT 294658924 ENCODE Processing Pipeline 7fffd2d0b98f1fa650be6a3910f17ff9 https://www.encodeproject.org/files/ENCFF668OIS/@@download/ENCFF668OIS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF161IED bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF847VTQ 180047 ENCODE Processing Pipeline 41f2f0578ed95840b855263f3565fab2 https://www.encodeproject.org/files/ENCFF161IED/@@download/ENCFF161IED.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF141IPU bigWig fold change over control ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF049EYU, ENCFF171OVT, ENCFF629AKI 509325866 ENCODE Processing Pipeline b380b78e407f0414bd3a1b485fc136a7 https://www.encodeproject.org/files/ENCFF141IPU/@@download/ENCFF141IPU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF448VYN bed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF049EYU, ENCFF171OVT 4171073 ENCODE Processing Pipeline ea601ceee87684cb841b4d82d222608d https://www.encodeproject.org/files/ENCFF448VYN/@@download/ENCFF448VYN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF140WUQ bed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF049EYU, ENCFF171OVT, ENCFF629AKI 4922196 ENCODE Processing Pipeline 6161af0c6d2d646ffebaf352e10f3a87 https://www.encodeproject.org/files/ENCFF140WUQ/@@download/ENCFF140WUQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF919EAE bigBed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF448VYN 10235142 ENCODE Processing Pipeline 334ee6ac96faf0ec100adcd0cc76ef7e https://www.encodeproject.org/files/ENCFF919EAE/@@download/ENCFF919EAE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF302OTZ fastq reads ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 738913403 Michael Snyder, Stanford 2a2f835186cc379faa817dcd5e0e1865 https://www.encodeproject.org/files/ENCFF302OTZ/@@download/ENCFF302OTZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF825QPA fastq reads ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 618967114 Michael Snyder, Stanford c00d819464e6eacb244d08989c29c7ca https://www.encodeproject.org/files/ENCFF825QPA/@@download/ENCFF825QPA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF379OHH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF825QPA 623177547 Michael Snyder, Stanford 96b22d83af44ee2032a1151458749a21 https://www.encodeproject.org/files/ENCFF379OHH/@@download/ENCFF379OHH.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF811MVO bed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF068TCP, ENCFF379OHH 478468 Michael Snyder, Stanford 86913028a40f9e6895153070b30e9c5d https://www.encodeproject.org/files/ENCFF811MVO/@@download/ENCFF811MVO.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF068TCP bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF302OTZ 739519850 Michael Snyder, Stanford 9b710de391dc44dae61c29b3c423e5f0 https://www.encodeproject.org/files/ENCFF068TCP/@@download/ENCFF068TCP.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF815EXJ bigBed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF811MVO 1076835 ENCODE Consortium 15743756e63515a3816fa2b7b79b1b06 https://www.encodeproject.org/files/ENCFF815EXJ/@@download/ENCFF815EXJ.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF066YTZ bam unfiltered alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF825QPA 828598909 ENCODE Processing Pipeline 8e18dd77b1ef4d120d7a14fd5b2e9c74 https://www.encodeproject.org/files/ENCFF066YTZ/@@download/ENCFF066YTZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF274UYC bam unfiltered alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF302OTZ 960890429 ENCODE Processing Pipeline 35ce4715cf40317fc292629e8ae5f2af https://www.encodeproject.org/files/ENCFF274UYC/@@download/ENCFF274UYC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF211JZH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF825QPA 539425575 ENCODE Processing Pipeline e7731ad8e4d741483cfd649c4fa3639b https://www.encodeproject.org/files/ENCFF211JZH/@@download/ENCFF211JZH.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF123LVH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF302OTZ 606561663 ENCODE Processing Pipeline b2cda9b4cd579c9f9ba06048d21af92d https://www.encodeproject.org/files/ENCFF123LVH/@@download/ENCFF123LVH.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF135ZME bigWig signal p-value ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF211JZH, ENCFF339ZWC 237997199 ENCODE Processing Pipeline d8a0d59463c916667aaf070c28fe56a0 https://www.encodeproject.org/files/ENCFF135ZME/@@download/ENCFF135ZME.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF091IDJ bigWig signal p-value ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF123LVH, ENCFF339ZWC 242796218 ENCODE Processing Pipeline a34f688eeeac38b6bc3a0848023d645e https://www.encodeproject.org/files/ENCFF091IDJ/@@download/ENCFF091IDJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF067CSE bigWig fold change over control ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF211JZH, ENCFF339ZWC 228958421 ENCODE Processing Pipeline 854a1893bb30a4cfd7007210e22e815f https://www.encodeproject.org/files/ENCFF067CSE/@@download/ENCFF067CSE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF873ENM bigWig signal p-value ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF123LVH, ENCFF211JZH, ENCFF339ZWC 235227857 ENCODE Processing Pipeline de4670e03258d88489de188a76b64579 https://www.encodeproject.org/files/ENCFF873ENM/@@download/ENCFF873ENM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF718ZJW bigWig fold change over control ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF123LVH, ENCFF339ZWC 254878433 ENCODE Processing Pipeline 8f03f72f5f9883c5f56ca95f7084ba92 https://www.encodeproject.org/files/ENCFF718ZJW/@@download/ENCFF718ZJW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF890ZJF bed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF123LVH, ENCFF211JZH, ENCFF339ZWC 5629718 ENCODE Processing Pipeline 60ffd7e9233be7823a70febcbd5efd81 https://www.encodeproject.org/files/ENCFF890ZJF/@@download/ENCFF890ZJF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF610OEV bed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF123LVH, ENCFF339ZWC 5086052 ENCODE Processing Pipeline 4f90d77e7022e3b531f321421c1cc294 https://www.encodeproject.org/files/ENCFF610OEV/@@download/ENCFF610OEV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF393SFN bed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF211JZH, ENCFF339ZWC 4780787 ENCODE Processing Pipeline 51b7c498307e1a54c067fe751ac9da1d https://www.encodeproject.org/files/ENCFF393SFN/@@download/ENCFF393SFN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF600CWP bigWig fold change over control ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF123LVH, ENCFF211JZH, ENCFF339ZWC 419830492 ENCODE Processing Pipeline 566c4fe920e0d67063600ee39f426a8d https://www.encodeproject.org/files/ENCFF600CWP/@@download/ENCFF600CWP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF765ZTD bigBed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF393SFN 10259128 ENCODE Processing Pipeline cf5dab2c728ccc6793cb57a9435a6f6b https://www.encodeproject.org/files/ENCFF765ZTD/@@download/ENCFF765ZTD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF146HTY bigBed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF610OEV 12647227 ENCODE Processing Pipeline 848c9fec684c4093a1b68b57d007ab1e https://www.encodeproject.org/files/ENCFF146HTY/@@download/ENCFF146HTY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF945FJO bigBed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF890ZJF 12911856 ENCODE Processing Pipeline 927ea82c2b5246fb36be47e2592117a3 https://www.encodeproject.org/files/ENCFF945FJO/@@download/ENCFF945FJO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF893ZYP bed narrowPeak conservative idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF393SFN, ENCFF547MET, ENCFF610OEV, ENCFF890ZJF 495732 ENCODE Processing Pipeline 0dee5019c8ace902bb28123e190385c2 https://www.encodeproject.org/files/ENCFF893ZYP/@@download/ENCFF893ZYP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF382XAS bigBed narrowPeak conservative idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF893ZYP 976459 ENCODE Processing Pipeline 65a3a9a6df72c9f144e24a2ab9c2106b https://www.encodeproject.org/files/ENCFF382XAS/@@download/ENCFF382XAS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF606SGT bigBed narrowPeak optimal idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF683MGY 1019669 ENCODE Processing Pipeline c23c790e21e2fad5e0dda301c7acf320 https://www.encodeproject.org/files/ENCFF606SGT/@@download/ENCFF606SGT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF683MGY bed narrowPeak optimal idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF393SFN, ENCFF547MET, ENCFF610OEV, ENCFF890ZJF 524918 ENCODE Processing Pipeline afd5e5b8f706016c408592beba12e6ab https://www.encodeproject.org/files/ENCFF683MGY/@@download/ENCFF683MGY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF001LSO bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSZ 270875170 Bing Ren, UCSD 184c0008111f1ae4a056cb1c4ecc9225 https://www.encodeproject.org/files/ENCFF001LSO/@@download/ENCFF001LSO.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSP bigBed broadPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBD 327364 Bing Ren, UCSD 6cbd25d9a80d511a0b907efe626823ed https://www.encodeproject.org/files/ENCFF001LSP/@@download/ENCFF001LSP.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSQ bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTA 363271373 Bing Ren, UCSD f7b4bbc0b3334b27630e8d7adc64825f https://www.encodeproject.org/files/ENCFF001LSQ/@@download/ENCFF001LSQ.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSR bigWig signal ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSO, ENCFF001LSQ 45114690 Bing Ren, UCSD ad044da687ac21ab75ce14749ecf5a44 https://www.encodeproject.org/files/ENCFF001LSR/@@download/ENCFF001LSR.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LSZ fastq reads ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 425888815 Bing Ren, UCSD d1b018b757a214337ac4996913b7685a https://www.encodeproject.org/files/ENCFF001LSZ/@@download/ENCFF001LSZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LTA fastq reads ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 520739019 Bing Ren, UCSD 817d7f1cff4252648b207dc136fc92f2 https://www.encodeproject.org/files/ENCFF001LTA/@@download/ENCFF001LTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001YBD bed broadPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSO, ENCFF001LSQ 215964 Bing Ren, UCSD 500f8d677171b9695921713949ba6ff1 https://www.encodeproject.org/files/ENCFF001YBD/@@download/ENCFF001YBD.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF722PAU bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LTA, ENCFF018NEO 281299857 ENCODE Processing Pipeline 72ab40ad0a6bcc0d092fc292e20e8dd0 https://www.encodeproject.org/files/ENCFF722PAU/@@download/ENCFF722PAU.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF089IUJ bam unfiltered alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LTA, ENCFF018NEO 548355484 ENCODE Processing Pipeline ddace29e2afde400aa179bf0ade10de9 https://www.encodeproject.org/files/ENCFF089IUJ/@@download/ENCFF089IUJ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF934FZM bam unfiltered alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSZ, ENCFF018NEO 414601720 ENCODE Processing Pipeline 9a9807371dee738c857ef073bd98adb3 https://www.encodeproject.org/files/ENCFF934FZM/@@download/ENCFF934FZM.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF046UOO bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSZ, ENCFF018NEO 159001883 ENCODE Processing Pipeline 7e74c739453cd06924490c3663dc23a9 https://www.encodeproject.org/files/ENCFF046UOO/@@download/ENCFF046UOO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF844QCZ bigWig signal p-value ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF722PAU 208571343 ENCODE Processing Pipeline 529fa47cc16834f8c029df8f029fc406 https://www.encodeproject.org/files/ENCFF844QCZ/@@download/ENCFF844QCZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF309ODT bigWig signal p-value ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF046UOO, ENCFF283CTW 154530346 ENCODE Processing Pipeline 38a1f2bbc9124297ba9bef4e75cdd5e5 https://www.encodeproject.org/files/ENCFF309ODT/@@download/ENCFF309ODT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF832UWC bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF119XEH 540168 ENCODE Processing Pipeline b61821b99c3d44568a82c55344d03205 https://www.encodeproject.org/files/ENCFF832UWC/@@download/ENCFF832UWC.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF590HPU bigWig signal p-value ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF046UOO, ENCFF283CTW, ENCFF347BCY, ENCFF722PAU 303867753 ENCODE Processing Pipeline 717895ed62bd7372cd1adc81446dd8e3 https://www.encodeproject.org/files/ENCFF590HPU/@@download/ENCFF590HPU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF521RKR bed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF722PAU 4798903 ENCODE Processing Pipeline 61f228433636f7a86e304855989dd132 https://www.encodeproject.org/files/ENCFF521RKR/@@download/ENCFF521RKR.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF436WBE bigBed narrowPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF284NSF 5527885 ENCODE Processing Pipeline 99cf88d54ca8a88f65f77537b1cd81fd https://www.encodeproject.org/files/ENCFF436WBE/@@download/ENCFF436WBE.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF775DJU bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF581ZRT 522606 ENCODE Processing Pipeline 8313f1510ab639de90f2bd3a133991cc https://www.encodeproject.org/files/ENCFF775DJU/@@download/ENCFF775DJU.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF584EVO bigWig fold change over control ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF046UOO, ENCFF283CTW 80003888 ENCODE Processing Pipeline a0877ea66134978e44719dc998aa5aea https://www.encodeproject.org/files/ENCFF584EVO/@@download/ENCFF584EVO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF425CSD bigBed narrowPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF521RKR 12348383 ENCODE Processing Pipeline a81c8d4e997fdedae4425f3081d83433 https://www.encodeproject.org/files/ENCFF425CSD/@@download/ENCFF425CSD.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF194AWF bigBed narrowPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF487HJO 12783264 ENCODE Processing Pipeline 872673e66d62014c930a2595ec3119ca https://www.encodeproject.org/files/ENCFF194AWF/@@download/ENCFF194AWF.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF581ZRT bed narrowPeak conservative idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF284NSF, ENCFF487HJO, ENCFF521RKR, ENCFF547MET 223976 ENCODE Processing Pipeline ac037e6476d51e2b9aa3a3e753516a32 https://www.encodeproject.org/files/ENCFF581ZRT/@@download/ENCFF581ZRT.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF725CUG bigWig fold change over control ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF046UOO, ENCFF283CTW, ENCFF347BCY, ENCFF722PAU 233395797 ENCODE Processing Pipeline 721d4400801c8505beacec56f2b1efce https://www.encodeproject.org/files/ENCFF725CUG/@@download/ENCFF725CUG.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF284NSF bed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF046UOO, ENCFF283CTW 2512779 ENCODE Processing Pipeline f408507fabdef38b206be4486a70145a https://www.encodeproject.org/files/ENCFF284NSF/@@download/ENCFF284NSF.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF682GFJ bigWig fold change over control ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF722PAU 132265589 ENCODE Processing Pipeline 87e812e1e4252d4197082858053842d6 https://www.encodeproject.org/files/ENCFF682GFJ/@@download/ENCFF682GFJ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF487HJO bed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF046UOO, ENCFF283CTW, ENCFF347BCY, ENCFF722PAU 5824948 ENCODE Processing Pipeline 504b4825389ecebda8c09a67e21b4782 https://www.encodeproject.org/files/ENCFF487HJO/@@download/ENCFF487HJO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF119XEH bed narrowPeak optimal idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF284NSF, ENCFF487HJO, ENCFF521RKR, ENCFF547MET 234446 ENCODE Processing Pipeline e7134bd8cf4ac63d6347ffc764c60e1c https://www.encodeproject.org/files/ENCFF119XEH/@@download/ENCFF119XEH.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity extremely low read depth ENCFF001LKI bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKT 374314699 Bing Ren, UCSD fcea5d8d140f7a40e4adc817fc61ef63 https://www.encodeproject.org/files/ENCFF001LKI/@@download/ENCFF001LKI.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LKJ bigBed broadPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAH 660714 Bing Ren, UCSD f991944d14dbb262c94cf610aecd62a7 https://www.encodeproject.org/files/ENCFF001LKJ/@@download/ENCFF001LKJ.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LKK bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LKS 633749326 Bing Ren, UCSD ca87b1fe60f74c60b7a85c859953ad4c https://www.encodeproject.org/files/ENCFF001LKK/@@download/ENCFF001LKK.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LKL bigWig signal ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKI, ENCFF001LKK 51981298 Bing Ren, UCSD ac2c7ef786de215ef20b848db12d3401 https://www.encodeproject.org/files/ENCFF001LKL/@@download/ENCFF001LKL.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LKS fastq reads ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 845503911 Bing Ren, UCSD b7e2fcfb2b2523d3641b75070e736cf8 https://www.encodeproject.org/files/ENCFF001LKS/@@download/ENCFF001LKS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001LKT fastq reads ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 728662005 Bing Ren, UCSD 40dd2bd766b5eeb75df37524dfc50523 https://www.encodeproject.org/files/ENCFF001LKT/@@download/ENCFF001LKT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001YAH bed broadPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKI, ENCFF001LKK 408177 Bing Ren, UCSD de3c90de4c7cf98098fdd3b8a63f1291 https://www.encodeproject.org/files/ENCFF001YAH/@@download/ENCFF001YAH.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF553TDF bam unfiltered alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKS, ENCFF018NEO 910646985 ENCODE Processing Pipeline bc71351e4c0ccc2aa3327fd75bfe3607 https://www.encodeproject.org/files/ENCFF553TDF/@@download/ENCFF553TDF.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF604NSV bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKT, ENCFF018NEO 362456918 ENCODE Processing Pipeline 63a07c288fcde35a7e370989461aa01d https://www.encodeproject.org/files/ENCFF604NSV/@@download/ENCFF604NSV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF659DWI bam unfiltered alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKT, ENCFF018NEO 774035448 ENCODE Processing Pipeline 1b77e21f452e74c146eabd1f3612ad59 https://www.encodeproject.org/files/ENCFF659DWI/@@download/ENCFF659DWI.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF042BFD bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKS, ENCFF018NEO 477222118 ENCODE Processing Pipeline b6725f9b1cecba0a259251280378c3d6 https://www.encodeproject.org/files/ENCFF042BFD/@@download/ENCFF042BFD.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF386MTU bigWig fold change over control ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 177049754 ENCODE Processing Pipeline 69f03c92e9af309120df8ca9b530c71b https://www.encodeproject.org/files/ENCFF386MTU/@@download/ENCFF386MTU.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF466TIE bed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ 3781839 ENCODE Processing Pipeline 5658803dc1c604501067a0f81cc19819 https://www.encodeproject.org/files/ENCFF466TIE/@@download/ENCFF466TIE.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF843QRW bigWig signal p-value ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 282760575 ENCODE Processing Pipeline 45eaf60f3f5614c5ce170e334b8619e0 https://www.encodeproject.org/files/ENCFF843QRW/@@download/ENCFF843QRW.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF966RLY bigWig fold change over control ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ 193901788 ENCODE Processing Pipeline c101aa60c67f79b0ddeb5e328d213274 https://www.encodeproject.org/files/ENCFF966RLY/@@download/ENCFF966RLY.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF868AOT bigWig fold change over control ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 301701171 ENCODE Processing Pipeline 80782c0e926c113696ec0e918536b3d5 https://www.encodeproject.org/files/ENCFF868AOT/@@download/ENCFF868AOT.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF838VJB bed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 4533234 ENCODE Processing Pipeline a3b4c0c97537e6e0358a77472cd9b7fe https://www.encodeproject.org/files/ENCFF838VJB/@@download/ENCFF838VJB.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF355MSF bigBed narrowPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF466TIE 8225946 ENCODE Processing Pipeline 173b66d6605f4b23c12a3c63daf41d72 https://www.encodeproject.org/files/ENCFF355MSF/@@download/ENCFF355MSF.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF034DKV bigWig signal p-value ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ 326505969 ENCODE Processing Pipeline 1c7ccbc710f26487a9fdafd4750d083d https://www.encodeproject.org/files/ENCFF034DKV/@@download/ENCFF034DKV.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF305EHP bigWig signal p-value ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 373078048 ENCODE Processing Pipeline b2c24126495b35151668e5a88e3e34be https://www.encodeproject.org/files/ENCFF305EHP/@@download/ENCFF305EHP.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF931IXU bigBed narrowPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF270RGP 12623382 ENCODE Processing Pipeline 8c2817172093e4daa30b40f2ad584dfd https://www.encodeproject.org/files/ENCFF931IXU/@@download/ENCFF931IXU.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF899ZWB bed narrowPeak conservative idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF270RGP, ENCFF466TIE, ENCFF547MET, ENCFF838VJB 420600 ENCODE Processing Pipeline de788765ad4c0db1bc5854b3b91cea40 https://www.encodeproject.org/files/ENCFF899ZWB/@@download/ENCFF899ZWB.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF752SPM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF454MFZ 938738 ENCODE Processing Pipeline 118c9f79b236c1e44e99fb3f839c1c16 https://www.encodeproject.org/files/ENCFF752SPM/@@download/ENCFF752SPM.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF270RGP bed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 5669327 ENCODE Processing Pipeline 94a33bdbe4e88bfad0c48351a9d9ac57 https://www.encodeproject.org/files/ENCFF270RGP/@@download/ENCFF270RGP.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF907UCH bigBed narrowPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF838VJB 10175700 ENCODE Processing Pipeline ba1150a3c0021724af96fbffce83f23a https://www.encodeproject.org/files/ENCFF907UCH/@@download/ENCFF907UCH.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF925KPA bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF899ZWB 867755 ENCODE Processing Pipeline 59ee0ed596751a6444a22833e4520c8b https://www.encodeproject.org/files/ENCFF925KPA/@@download/ENCFF925KPA.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF454MFZ bed narrowPeak optimal idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF270RGP, ENCFF466TIE, ENCFF547MET, ENCFF838VJB 467428 ENCODE Processing Pipeline 632f1826ff37c9254f1d75dabed59a86 https://www.encodeproject.org/files/ENCFF454MFZ/@@download/ENCFF454MFZ.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001NLI bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NLK 423380759 Michael Snyder, Stanford 34a5709b61b6d1eb132b308384dd3552 https://www.encodeproject.org/files/ENCFF001NLI/@@download/ENCFF001NLI.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLJ bigBed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YIP 414499 Michael Snyder, Stanford 2f40f63440ddb75675f9c989fcfd399b https://www.encodeproject.org/files/ENCFF001NLJ/@@download/ENCFF001NLJ.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLK fastq reads ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1021375159 Michael Snyder, Stanford 348d49e822c6a54a6b3c1bd3700b638a https://www.encodeproject.org/files/ENCFF001NLK/@@download/ENCFF001NLK.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLM fastq reads ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 889330379 Michael Snyder, Stanford 3a304a6402dd1b942b81988544f7bde8 https://www.encodeproject.org/files/ENCFF001NLM/@@download/ENCFF001NLM.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLO bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NLM 346753267 Michael Snyder, Stanford 4f83ddb298ddf2c3841c3710bee5b473 https://www.encodeproject.org/files/ENCFF001NLO/@@download/ENCFF001NLO.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001NLP bigWig signal ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NLI, ENCFF001NLO 126957185 Michael Snyder, Stanford 8e6885b30c5a890db8f800ebbaed353f https://www.encodeproject.org/files/ENCFF001NLP/@@download/ENCFF001NLP.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001YIP bed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NLI, ENCFF001NLO 166563 Michael Snyder, Stanford 93db7637aa311475dee970288f948160 https://www.encodeproject.org/files/ENCFF001YIP/@@download/ENCFF001YIP.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF347UCO bam unfiltered alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NLK, ENCFF018NEO 1023812157 ENCODE Processing Pipeline 04f6c3f324c655c9a197ef1245a6e715 https://www.encodeproject.org/files/ENCFF347UCO/@@download/ENCFF347UCO.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF238JRQ bam unfiltered alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NLM, ENCFF018NEO 895990426 ENCODE Processing Pipeline 76ad50d1b76a237189f354aceaf1aff0 https://www.encodeproject.org/files/ENCFF238JRQ/@@download/ENCFF238JRQ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF206KOY bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NLK, ENCFF018NEO 560173312 ENCODE Processing Pipeline 06d591b56d0b454534d7568dd308ea33 https://www.encodeproject.org/files/ENCFF206KOY/@@download/ENCFF206KOY.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF185QAZ bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NLM, ENCFF018NEO 448496441 ENCODE Processing Pipeline afd49e4e479241ca8855d9c0c667f951 https://www.encodeproject.org/files/ENCFF185QAZ/@@download/ENCFF185QAZ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF214RLH bigWig signal p-value ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF206KOY, ENCFF339ZWC 230951920 ENCODE Processing Pipeline 33227b6a46eb932d66e7584c210e56c2 https://www.encodeproject.org/files/ENCFF214RLH/@@download/ENCFF214RLH.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF774IVV bigWig signal p-value ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF185QAZ, ENCFF339ZWC 209359637 ENCODE Processing Pipeline e43b8b95eaa19936733dc36c669265f5 https://www.encodeproject.org/files/ENCFF774IVV/@@download/ENCFF774IVV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF003ZUU bigWig signal p-value ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF185QAZ, ENCFF206KOY, ENCFF339ZWC 223868466 ENCODE Processing Pipeline 364eaa2c3bf5e0f280d3efbb62351c2f https://www.encodeproject.org/files/ENCFF003ZUU/@@download/ENCFF003ZUU.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF279HMV bigWig fold change over control ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF206KOY, ENCFF339ZWC 235358535 ENCODE Processing Pipeline aa5ff35099fd3d920014e02ae3401578 https://www.encodeproject.org/files/ENCFF279HMV/@@download/ENCFF279HMV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF392HBA bigWig fold change over control ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF185QAZ, ENCFF339ZWC 182661508 ENCODE Processing Pipeline 6643b2f526985065f6d3f91c33823fde https://www.encodeproject.org/files/ENCFF392HBA/@@download/ENCFF392HBA.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF053QBJ bed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF185QAZ, ENCFF339ZWC 4841754 ENCODE Processing Pipeline 73c13c3d8ff0f684e113be2b5dd8ef9b https://www.encodeproject.org/files/ENCFF053QBJ/@@download/ENCFF053QBJ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF449TQX bigBed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF405OWO 12603887 ENCODE Processing Pipeline bbaa230b9ab9dfdbf240cb4c858116a0 https://www.encodeproject.org/files/ENCFF449TQX/@@download/ENCFF449TQX.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF950EEV bigWig fold change over control ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF185QAZ, ENCFF206KOY, ENCFF339ZWC 374477040 ENCODE Processing Pipeline ed150bdc3b61b9863937912819ae28e2 https://www.encodeproject.org/files/ENCFF950EEV/@@download/ENCFF950EEV.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF861WBH bigBed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF053QBJ 12527928 ENCODE Processing Pipeline b2ed988fe610a13f032ebd3d636aa3b4 https://www.encodeproject.org/files/ENCFF861WBH/@@download/ENCFF861WBH.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF966DTT bed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF185QAZ, ENCFF206KOY, ENCFF339ZWC 5626851 ENCODE Processing Pipeline 36a994f61ad9a7bf729d27dc39a02a35 https://www.encodeproject.org/files/ENCFF966DTT/@@download/ENCFF966DTT.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF405OWO bed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF206KOY, ENCFF339ZWC 5020575 ENCODE Processing Pipeline c22950adc96926e896e761c03537fbdf https://www.encodeproject.org/files/ENCFF405OWO/@@download/ENCFF405OWO.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF172NSN bigBed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF966DTT 12730065 ENCODE Processing Pipeline 16a8fa3b7c84ce69b116e8faa7c2ac32 https://www.encodeproject.org/files/ENCFF172NSN/@@download/ENCFF172NSN.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF331ZKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF249SSR 557130 ENCODE Processing Pipeline 0ae0ef02215f2890059c8dd2b5a89aeb https://www.encodeproject.org/files/ENCFF331ZKN/@@download/ENCFF331ZKN.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF449MCJ bed narrowPeak optimal idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF053QBJ, ENCFF405OWO, ENCFF547MET, ENCFF966DTT 229623 ENCODE Processing Pipeline fb23ef72a524a4628a6b0b69a366985d https://www.encodeproject.org/files/ENCFF449MCJ/@@download/ENCFF449MCJ.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF249SSR bed narrowPeak conservative idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF053QBJ, ENCFF405OWO, ENCFF547MET, ENCFF966DTT 228769 ENCODE Processing Pipeline c4a3f3ba6ccac89d78f8c97b68e48415 https://www.encodeproject.org/files/ENCFF249SSR/@@download/ENCFF249SSR.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF136GFP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF449MCJ 560002 ENCODE Processing Pipeline 83257db5553c63f6b71ed25613f98ce6 https://www.encodeproject.org/files/ENCFF136GFP/@@download/ENCFF136GFP.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LKA bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKP 523028282 Bing Ren, UCSD 28c48a669c377a2ed1e47bea1c4c769f https://www.encodeproject.org/files/ENCFF001LKA/@@download/ENCFF001LKA.bam mm9 released low read length insufficient read depth ENCFF001LKB bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LKQ 669812607 Bing Ren, UCSD b56b707888aad50137b5f458d8e59506 https://www.encodeproject.org/files/ENCFF001LKB/@@download/ENCFF001LKB.bam mm9 released low read length insufficient read depth ENCFF001LKC bigBed broadPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAG 472704 Bing Ren, UCSD 479cf06e7267734e186659a504cce366 https://www.encodeproject.org/files/ENCFF001LKC/@@download/ENCFF001LKC.bigBed mm9 released low read length insufficient read depth ENCFF001LKH bigWig signal ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKA, ENCFF001LKB 55099497 Bing Ren, UCSD 6e2abef015d359fe18179505a1c89255 https://www.encodeproject.org/files/ENCFF001LKH/@@download/ENCFF001LKH.bigWig mm9 released low read length insufficient read depth ENCFF001LKP fastq reads ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 770333272 Bing Ren, UCSD a4866a732881075af92fe32429c7da6f https://www.encodeproject.org/files/ENCFF001LKP/@@download/ENCFF001LKP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length insufficient read depth ENCFF001LKQ fastq reads ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 803225213 Bing Ren, UCSD 8eacc5eda2283503d19f23dd3d1e7394 https://www.encodeproject.org/files/ENCFF001LKQ/@@download/ENCFF001LKQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length insufficient read depth ENCFF001YAG bed broadPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKA, ENCFF001LKB 373271 Bing Ren, UCSD be314646d6ff9ca30ae45a666a1ea7f9 https://www.encodeproject.org/files/ENCFF001YAG/@@download/ENCFF001YAG.bed.gz mm9 released low read length insufficient read depth ENCFF270BOY bam unfiltered alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKP, ENCFF018NEO 845018827 ENCODE Processing Pipeline 49befcf6845db99e758082992c70ac6e https://www.encodeproject.org/files/ENCFF270BOY/@@download/ENCFF270BOY.bam mm10 released low read length insufficient read depth ENCFF124FHK bam unfiltered alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKQ, ENCFF018NEO 839540701 ENCODE Processing Pipeline ea188f8516b50a7eb0c0b0adea2bc723 https://www.encodeproject.org/files/ENCFF124FHK/@@download/ENCFF124FHK.bam mm10 released low read length insufficient read depth ENCFF333YHD bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKP, ENCFF018NEO 451660793 ENCODE Processing Pipeline 46ebd0c9194175f50b671618fbe62bce https://www.encodeproject.org/files/ENCFF333YHD/@@download/ENCFF333YHD.bam mm10 released low read length insufficient read depth ENCFF059ZFK bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKQ, ENCFF018NEO 370145426 ENCODE Processing Pipeline 17653b7ab6ec7f44dce53339652d0a73 https://www.encodeproject.org/files/ENCFF059ZFK/@@download/ENCFF059ZFK.bam mm10 released low read length insufficient read depth ENCFF245HNT bigWig signal p-value ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF059ZFK, ENCFF262EEH, ENCFF465PJQ 271963387 ENCODE Processing Pipeline d434d6f254d43adf7eabb714033ad15c https://www.encodeproject.org/files/ENCFF245HNT/@@download/ENCFF245HNT.bigWig mm10 released low read length insufficient read depth ENCFF765TKX bed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 5146143 ENCODE Processing Pipeline fdc744feb7d2c5889dd0c0ffd32262ec https://www.encodeproject.org/files/ENCFF765TKX/@@download/ENCFF765TKX.bed.gz mm10 released low read length insufficient read depth ENCFF892JTT bigWig signal p-value ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF059ZFK, ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 371328286 ENCODE Processing Pipeline 624ba241d569d9eaa0b9ecb7d56b0a97 https://www.encodeproject.org/files/ENCFF892JTT/@@download/ENCFF892JTT.bigWig mm10 released low read length insufficient read depth ENCFF791QTJ bigWig fold change over control ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF059ZFK, ENCFF262EEH, ENCFF465PJQ 181415745 ENCODE Processing Pipeline 25afdec34a7fd9d4c0a48415464b23df https://www.encodeproject.org/files/ENCFF791QTJ/@@download/ENCFF791QTJ.bigWig mm10 released low read length insufficient read depth ENCFF860XCU bigBed narrowPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF851FMZ 12807289 ENCODE Processing Pipeline c7937f595cc5f248f72218448712f8e3 https://www.encodeproject.org/files/ENCFF860XCU/@@download/ENCFF860XCU.bigBed mm10 released low read length insufficient read depth ENCFF851FMZ bed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF059ZFK, ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 6004802 ENCODE Processing Pipeline 6674664cb026ee8ed74f49606493bdaf https://www.encodeproject.org/files/ENCFF851FMZ/@@download/ENCFF851FMZ.bed.gz mm10 released low read length insufficient read depth ENCFF318IYB bed narrowPeak conservative idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF578UCL, ENCFF765TKX, ENCFF851FMZ 558933 ENCODE Processing Pipeline 60cbe399c6f81339f7a5d5f8fb5bdb75 https://www.encodeproject.org/files/ENCFF318IYB/@@download/ENCFF318IYB.bed.gz mm10 released low read length insufficient read depth ENCFF383PSV bed narrowPeak optimal idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF578UCL, ENCFF765TKX, ENCFF851FMZ 603676 ENCODE Processing Pipeline f1fc071be9a60f59977f01dc87253610 https://www.encodeproject.org/files/ENCFF383PSV/@@download/ENCFF383PSV.bed.gz mm10 released low read length insufficient read depth ENCFF852EDW bigWig fold change over control ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF059ZFK, ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 337119764 ENCODE Processing Pipeline 62b3f1723493a1f15c94bae4e68b91d0 https://www.encodeproject.org/files/ENCFF852EDW/@@download/ENCFF852EDW.bigWig mm10 released low read length insufficient read depth ENCFF233JUO bigWig signal p-value ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 283937982 ENCODE Processing Pipeline 5958c6b5daf3b9688abd5aeb0de5ab6b https://www.encodeproject.org/files/ENCFF233JUO/@@download/ENCFF233JUO.bigWig mm10 released low read length insufficient read depth ENCFF722DON bigWig fold change over control ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 225691296 ENCODE Processing Pipeline 8b0e82099f6f4a55237b62a01a65c65b https://www.encodeproject.org/files/ENCFF722DON/@@download/ENCFF722DON.bigWig mm10 released low read length insufficient read depth ENCFF950IOK bigBed narrowPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF765TKX 10618048 ENCODE Processing Pipeline ed61647e6febc63bb613c97832fb813c https://www.encodeproject.org/files/ENCFF950IOK/@@download/ENCFF950IOK.bigBed mm10 released low read length insufficient read depth ENCFF536GLG bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF318IYB 1048033 ENCODE Processing Pipeline fd28be350ba9e98a06996f38118007cb https://www.encodeproject.org/files/ENCFF536GLG/@@download/ENCFF536GLG.bigBed mm10 released low read length insufficient read depth ENCFF578UCL bed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF059ZFK, ENCFF262EEH, ENCFF465PJQ 4632890 ENCODE Processing Pipeline 0342f08583ab209537126f026a8f1210 https://www.encodeproject.org/files/ENCFF578UCL/@@download/ENCFF578UCL.bed.gz mm10 released low read length insufficient read depth ENCFF788YWH bigBed narrowPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF578UCL 10618794 ENCODE Processing Pipeline d1147ff5f528e49ce47379ab4652ebb7 https://www.encodeproject.org/files/ENCFF788YWH/@@download/ENCFF788YWH.bigBed mm10 released low read length insufficient read depth ENCFF675TZC bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF383PSV 1115152 ENCODE Processing Pipeline 1ae540e668158ae7c5b6696a8757981b https://www.encodeproject.org/files/ENCFF675TZC/@@download/ENCFF675TZC.bigBed mm10 released low read length insufficient read depth ENCFF001NOC fastq reads ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 793182833 Michael Snyder, Stanford 95a7ee14869770f5f57c6549e3ccb241 https://www.encodeproject.org/files/ENCFF001NOC/@@download/ENCFF001NOC.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NOB bigBed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIX 550569 Michael Snyder, Stanford b651ab4728e321714511faee5b779d3e https://www.encodeproject.org/files/ENCFF001NOB/@@download/ENCFF001NOB.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NOE bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NOC 379622293 Michael Snyder, Stanford 034c146fb67c9d2f657a0b460a899d4c https://www.encodeproject.org/files/ENCFF001NOE/@@download/ENCFF001NOE.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NOF fastq reads ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1587495011 Michael Snyder, Stanford 22ba6b9467c39be6117b42805a2891ca https://www.encodeproject.org/files/ENCFF001NOF/@@download/ENCFF001NOF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NOH bigWig signal ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOE, ENCFF001NOI 233992794 Michael Snyder, Stanford 60ac80c51e62105e3d9fbc20d2bf01be https://www.encodeproject.org/files/ENCFF001NOH/@@download/ENCFF001NOH.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001NOI bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NOF 681057801 Michael Snyder, Stanford b597c930a7e71b5964a3ecb59a0881ce https://www.encodeproject.org/files/ENCFF001NOI/@@download/ENCFF001NOI.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001YIX bed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOE, ENCFF001NOI 233365 Michael Snyder, Stanford b86e14f95ca15613a23c042b3128b5c0 https://www.encodeproject.org/files/ENCFF001YIX/@@download/ENCFF001YIX.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF635SAN bam unfiltered alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOF, ENCFF018NEO 1707186703 ENCODE Processing Pipeline 7a48a16ab3e506673762b17b25c072c8 https://www.encodeproject.org/files/ENCFF635SAN/@@download/ENCFF635SAN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF361ECJ bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOC, ENCFF018NEO 540591748 ENCODE Processing Pipeline dd491191aaf972da8cb965427c8c1297 https://www.encodeproject.org/files/ENCFF361ECJ/@@download/ENCFF361ECJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF634JSV bam unfiltered alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOC, ENCFF018NEO 882869246 ENCODE Processing Pipeline 93a9231c47d2782f70046b80988289e2 https://www.encodeproject.org/files/ENCFF634JSV/@@download/ENCFF634JSV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF853JQH bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOF, ENCFF018NEO 992373682 ENCODE Processing Pipeline 1116376e83a5920afb778509239059df https://www.encodeproject.org/files/ENCFF853JQH/@@download/ENCFF853JQH.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF088PZP bigWig signal p-value ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF361ECJ, ENCFF966YUS 455521764 ENCODE Processing Pipeline f6a0c7817530c916241de7bed319f5b7 https://www.encodeproject.org/files/ENCFF088PZP/@@download/ENCFF088PZP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF343KSC bigWig signal p-value ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF853JQH, ENCFF966YUS 489568088 ENCODE Processing Pipeline e0954c8a6401850ef8bdd6ee4d76b1c4 https://www.encodeproject.org/files/ENCFF343KSC/@@download/ENCFF343KSC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF831ROG bigWig fold change over control ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF361ECJ, ENCFF966YUS 295446893 ENCODE Processing Pipeline 92e161c14bb29e217b24414a112f83e0 https://www.encodeproject.org/files/ENCFF831ROG/@@download/ENCFF831ROG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF240VTU bigWig signal p-value ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF361ECJ, ENCFF853JQH, ENCFF966YUS 662121533 ENCODE Processing Pipeline 2688a7391c07799e7b7d40440fc48aa6 https://www.encodeproject.org/files/ENCFF240VTU/@@download/ENCFF240VTU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF820EQV bigWig fold change over control ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF853JQH, ENCFF966YUS 491318638 ENCODE Processing Pipeline 2bcf600e6075a5203b381f93c8717665 https://www.encodeproject.org/files/ENCFF820EQV/@@download/ENCFF820EQV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF550KLM bigWig fold change over control ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF361ECJ, ENCFF853JQH, ENCFF966YUS 666446104 ENCODE Processing Pipeline bd4558cda4274dd5dd4b1df4e7080d77 https://www.encodeproject.org/files/ENCFF550KLM/@@download/ENCFF550KLM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF929BUB bed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF361ECJ, ENCFF966YUS 4553168 ENCODE Processing Pipeline 407f6b7cb89b0244f595b3b001a17a2a https://www.encodeproject.org/files/ENCFF929BUB/@@download/ENCFF929BUB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF507SGS bed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF853JQH, ENCFF966YUS 4552386 ENCODE Processing Pipeline e2164f6f60ad9d2946ea736b0780570b https://www.encodeproject.org/files/ENCFF507SGS/@@download/ENCFF507SGS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF502CBA bigBed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF507SGS 11065675 ENCODE Processing Pipeline 32d4290b4fd7197b70af01852e038d2a https://www.encodeproject.org/files/ENCFF502CBA/@@download/ENCFF502CBA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF629JWT bed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF361ECJ, ENCFF853JQH, ENCFF966YUS 5087438 ENCODE Processing Pipeline d0026c4bf11639515c3f526574268f6f https://www.encodeproject.org/files/ENCFF629JWT/@@download/ENCFF629JWT.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF068MMQ bigBed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF929BUB 10798811 ENCODE Processing Pipeline eddfa7428f081c91a0f705b86e0d3c56 https://www.encodeproject.org/files/ENCFF068MMQ/@@download/ENCFF068MMQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF344RHK bigBed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF629JWT 11457391 ENCODE Processing Pipeline a355565cb118b117515b2c993d1f1632 https://www.encodeproject.org/files/ENCFF344RHK/@@download/ENCFF344RHK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF024QSW bed narrowPeak conservative idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF507SGS, ENCFF547MET, ENCFF629JWT, ENCFF929BUB 305744 ENCODE Processing Pipeline b423d9e26877d69ac0c6ea0f02c50448 https://www.encodeproject.org/files/ENCFF024QSW/@@download/ENCFF024QSW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF037HDU bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF024QSW 577484 ENCODE Processing Pipeline e898b4a95df6e4c8435cff2338e7b0f6 https://www.encodeproject.org/files/ENCFF037HDU/@@download/ENCFF037HDU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF377JTE bed narrowPeak optimal idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF507SGS, ENCFF547MET, ENCFF629JWT, ENCFF929BUB 330877 ENCODE Processing Pipeline 883cffa8d63a81203d08d23ba268e5e4 https://www.encodeproject.org/files/ENCFF377JTE/@@download/ENCFF377JTE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF639IFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF377JTE 614526 ENCODE Processing Pipeline 4e5bc8ee40bb438887ef4240b64b31ec https://www.encodeproject.org/files/ENCFF639IFN/@@download/ENCFF639IFN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001LRV bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSK 884604125 Bing Ren, UCSD 6afa217a5b1f59d4fc74c5b7899fff60 https://www.encodeproject.org/files/ENCFF001LRV/@@download/ENCFF001LRV.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LRZ bigBed broadPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBB 441112 Bing Ren, UCSD ca22481bc24fb654a589b1d2fce98cf2 https://www.encodeproject.org/files/ENCFF001LRZ/@@download/ENCFF001LRZ.bigBed mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LSA bigWig signal ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRV, ENCFF001LSB 67574229 Bing Ren, UCSD e924cce0b6291a091cd47c149101c753 https://www.encodeproject.org/files/ENCFF001LSA/@@download/ENCFF001LSA.bigWig mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LSB bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LSN 756669983 Bing Ren, UCSD 7b18b13cc3b36de5be314fd9ff2102d5 https://www.encodeproject.org/files/ENCFF001LSB/@@download/ENCFF001LSB.bam mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LSK fastq reads ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 827841808 Bing Ren, UCSD e508cb94c1508ad0036d8d9767ff4590 https://www.encodeproject.org/files/ENCFF001LSK/@@download/ENCFF001LSK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KXE/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LSN fastq reads ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1108138658 Bing Ren, UCSD 92087c74e50a02f293e09177a1c8c427 https://www.encodeproject.org/files/ENCFF001LSN/@@download/ENCFF001LSN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001YBB bed broadPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRV, ENCFF001LSB 322022 Bing Ren, UCSD 2cecd7f42a51fbe4b105c08a6e1f8c05 https://www.encodeproject.org/files/ENCFF001YBB/@@download/ENCFF001YBB.bed.gz mm9 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF334SVH bam unfiltered alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSK, ENCFF018NEO 925847147 ENCODE Processing Pipeline 9e5cdaaee8b12192b1595a60de486476 https://www.encodeproject.org/files/ENCFF334SVH/@@download/ENCFF334SVH.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF435RFZ bam unfiltered alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSN, ENCFF018NEO 1154374709 ENCODE Processing Pipeline 626c8294c14a372179568878e0d89fa4 https://www.encodeproject.org/files/ENCFF435RFZ/@@download/ENCFF435RFZ.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF998UML bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSK, ENCFF018NEO 560825794 ENCODE Processing Pipeline 20194d266192acaa9963175bd50d390a https://www.encodeproject.org/files/ENCFF998UML/@@download/ENCFF998UML.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF748PAR bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSN, ENCFF018NEO 544126312 ENCODE Processing Pipeline 860d2d16bc7a0defafb5df1bef72e4b9 https://www.encodeproject.org/files/ENCFF748PAR/@@download/ENCFF748PAR.bam mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF781OXC bigBed narrowPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF864LRN 10198427 ENCODE Processing Pipeline 96427bd95eb49ca9a3a1ff15925070ec https://www.encodeproject.org/files/ENCFF781OXC/@@download/ENCFF781OXC.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF721LCP bigWig fold change over control ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC 220228985 ENCODE Processing Pipeline 682d45b075bb88d783c352f6b8b45c9b https://www.encodeproject.org/files/ENCFF721LCP/@@download/ENCFF721LCP.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF390HUU bed narrowPeak conservative idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF198QXS, ENCFF547MET, ENCFF590QKD, ENCFF864LRN 265026 ENCODE Processing Pipeline 098b59cae5f442c597c33d539566a41d https://www.encodeproject.org/files/ENCFF390HUU/@@download/ENCFF390HUU.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF869DEH bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF390HUU 598049 ENCODE Processing Pipeline 25db74823207bb638ef776d4d4b4204a https://www.encodeproject.org/files/ENCFF869DEH/@@download/ENCFF869DEH.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF480JJP bigWig signal p-value ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC, ENCFF998UML 183495391 ENCODE Processing Pipeline d672d6ae72393c369fa1fdc03b19953d https://www.encodeproject.org/files/ENCFF480JJP/@@download/ENCFF480JJP.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF552FRY bigWig fold change over control ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF942MHC, ENCFF998UML 177794767 ENCODE Processing Pipeline d6dfe9ff6e68e4a61aacfc4b04daccaa https://www.encodeproject.org/files/ENCFF552FRY/@@download/ENCFF552FRY.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF817PEL bigWig signal p-value ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF942MHC, ENCFF998UML 194093132 ENCODE Processing Pipeline 472cf3650d2245b07f4d24ae7d1d55aa https://www.encodeproject.org/files/ENCFF817PEL/@@download/ENCFF817PEL.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF430EBI bigWig signal p-value ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC 203546329 ENCODE Processing Pipeline ed0d804aefd36ae35b8bc6e8ed5e515f https://www.encodeproject.org/files/ENCFF430EBI/@@download/ENCFF430EBI.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF864LRN bed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF942MHC, ENCFF998UML 4576056 ENCODE Processing Pipeline 2035902143fb8db20ca86f2ec65afd8c https://www.encodeproject.org/files/ENCFF864LRN/@@download/ENCFF864LRN.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF875SHZ bigBed narrowPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF590QKD 12693267 ENCODE Processing Pipeline 5889c65736ea64bd24d7bd3b9e326c11 https://www.encodeproject.org/files/ENCFF875SHZ/@@download/ENCFF875SHZ.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF936ZRG bigBed narrowPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF198QXS 13007279 ENCODE Processing Pipeline 95ec4eecb98af8142a6d195aa96dcbba https://www.encodeproject.org/files/ENCFF936ZRG/@@download/ENCFF936ZRG.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF198QXS bed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC, ENCFF998UML 5899795 ENCODE Processing Pipeline 9d66f8ccc00e997846ee6627dd9eaf9b https://www.encodeproject.org/files/ENCFF198QXS/@@download/ENCFF198QXS.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF887TLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF903KGH 734326 ENCODE Processing Pipeline 151d0901ca2049f55097087a38d2f27f https://www.encodeproject.org/files/ENCFF887TLF/@@download/ENCFF887TLF.bigBed mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF333YCZ bigWig fold change over control ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC, ENCFF998UML 350193027 ENCODE Processing Pipeline dd22e441edefcafce8b1676c5f20732b https://www.encodeproject.org/files/ENCFF333YCZ/@@download/ENCFF333YCZ.bigWig mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF590QKD bed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC 5118569 ENCODE Processing Pipeline 09f828630608ccd3bbdb7972bd04f485 https://www.encodeproject.org/files/ENCFF590QKD/@@download/ENCFF590QKD.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF903KGH bed narrowPeak optimal idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF198QXS, ENCFF547MET, ENCFF590QKD, ENCFF864LRN 348196 ENCODE Processing Pipeline 510c7f5bf5355ad4ed5e7dda3cca35b5 https://www.encodeproject.org/files/ENCFF903KGH/@@download/ENCFF903KGH.bed.gz mm10 released low read length, low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LFR bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGI 1153612473 Bing Ren, UCSD 19a4854564b4635c461d2cc16ca10647 https://www.encodeproject.org/files/ENCFF001LFR/@@download/ENCFF001LFR.bam mm9 released low read length insufficient read depth ENCFF001LFT bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LGH 647718774 Bing Ren, UCSD 45e9ad14f48a4e3dfb9a2f436dc75020 https://www.encodeproject.org/files/ENCFF001LFT/@@download/ENCFF001LFT.bam mm9 released low read length insufficient read depth ENCFF001LFU bigBed broadPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001XZU 327446 Bing Ren, UCSD 3a48a7020107030b45bad7dc5ad15a9c https://www.encodeproject.org/files/ENCFF001LFU/@@download/ENCFF001LFU.bigBed mm9 released low read length insufficient read depth ENCFF001LFX bigWig signal ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LFR, ENCFF001LFT 65418960 Bing Ren, UCSD 44feda014accb86f7ed7ec4bbcfce12e https://www.encodeproject.org/files/ENCFF001LFX/@@download/ENCFF001LFX.bigWig mm9 released low read length insufficient read depth ENCFF001LGH fastq reads ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 741545851 Bing Ren, UCSD 183aa93675447d7779c373e1da2378c7 https://www.encodeproject.org/files/ENCFF001LGH/@@download/ENCFF001LGH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released low read length insufficient read depth ENCFF001LGI fastq reads ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 1453014793 Bing Ren, UCSD 62dd21da575725327cd70ede798149c9 https://www.encodeproject.org/files/ENCFF001LGI/@@download/ENCFF001LGI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released low read length insufficient read depth ENCFF001XZU bed broadPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LFR, ENCFF001LFT 207159 Bing Ren, UCSD 747b18f3bbdfce90f8810790392ab410 https://www.encodeproject.org/files/ENCFF001XZU/@@download/ENCFF001XZU.bed.gz mm9 released low read length insufficient read depth ENCFF911ZCR bam unfiltered alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 823865506 ENCODE Processing Pipeline cf25cb18a14b34ad12ec6802fd1a8b8b https://www.encodeproject.org/files/ENCFF911ZCR/@@download/ENCFF911ZCR.bam mm10 released low read length insufficient read depth ENCFF891BRQ bam unfiltered alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 1642049188 ENCODE Processing Pipeline 4718b049e13e3bd6c066d8dfa4eaa7f8 https://www.encodeproject.org/files/ENCFF891BRQ/@@download/ENCFF891BRQ.bam mm10 released low read length insufficient read depth ENCFF671WIS bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 400255827 ENCODE Processing Pipeline 00c98166791f20d9cde0244725fec6a4 https://www.encodeproject.org/files/ENCFF671WIS/@@download/ENCFF671WIS.bam mm10 released low read length insufficient read depth ENCFF977LTN bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 976371376 ENCODE Processing Pipeline 87c806fad99da0a5dde553c0806efa8c https://www.encodeproject.org/files/ENCFF977LTN/@@download/ENCFF977LTN.bam mm10 released low read length insufficient read depth ENCFF459NZX bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 363577944 ENCODE Processing Pipeline d0d956307532b52b32b4dcac7b3eb80e https://www.encodeproject.org/files/ENCFF459NZX/@@download/ENCFF459NZX.bigWig mm10 released low read length insufficient read depth ENCFF872MDP bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 353898980 ENCODE Processing Pipeline 037d07b997bb28a9d7a833317abae16d https://www.encodeproject.org/files/ENCFF872MDP/@@download/ENCFF872MDP.bigWig mm10 released low read length insufficient read depth ENCFF900XVJ bed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 2525666 ENCODE Processing Pipeline 3b0f2b2c8d4f9a88abafa9e25d507f8a https://www.encodeproject.org/files/ENCFF900XVJ/@@download/ENCFF900XVJ.bed.gz mm10 released low read length insufficient read depth ENCFF211XET bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 125688667 ENCODE Processing Pipeline bbd03a1418a84503c5f6f84a9b5cd9d6 https://www.encodeproject.org/files/ENCFF211XET/@@download/ENCFF211XET.bigWig mm10 released low read length insufficient read depth ENCFF156BYW bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 448661830 ENCODE Processing Pipeline a9737317a0975431275563231ddbc73c https://www.encodeproject.org/files/ENCFF156BYW/@@download/ENCFF156BYW.bigWig mm10 released low read length insufficient read depth ENCFF846ENI bed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 4558545 ENCODE Processing Pipeline 79c109b69a401b2397c280c9a0c4232a https://www.encodeproject.org/files/ENCFF846ENI/@@download/ENCFF846ENI.bed.gz mm10 released low read length insufficient read depth ENCFF964XDN bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 156411747 ENCODE Processing Pipeline 3b414c61b14bf9670f89b06163917a7c https://www.encodeproject.org/files/ENCFF964XDN/@@download/ENCFF964XDN.bigWig mm10 released low read length insufficient read depth ENCFF708MJD bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 352260374 ENCODE Processing Pipeline 62123e1262392c6287ecad570d7527a4 https://www.encodeproject.org/files/ENCFF708MJD/@@download/ENCFF708MJD.bigWig mm10 released low read length insufficient read depth ENCFF452OAE bigBed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF900XVJ 5373960 ENCODE Processing Pipeline fbb199f9746658569a0d2d83ed99a87e https://www.encodeproject.org/files/ENCFF452OAE/@@download/ENCFF452OAE.bigBed mm10 released low read length insufficient read depth ENCFF938YDD bed narrowPeak conservative idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF774XDZ, ENCFF846ENI, ENCFF900XVJ 403801 ENCODE Processing Pipeline 11735e6d07bde5d9136a8cefc729dae3 https://www.encodeproject.org/files/ENCFF938YDD/@@download/ENCFF938YDD.bed.gz mm10 released low read length insufficient read depth ENCFF929VCS bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF938YDD 772584 ENCODE Processing Pipeline 0395ecc0d165f122db1419f408594ebb https://www.encodeproject.org/files/ENCFF929VCS/@@download/ENCFF929VCS.bigBed mm10 released low read length insufficient read depth ENCFF774XDZ bed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 4969323 ENCODE Processing Pipeline 0d0b75976b8190930d366d7494b4081d https://www.encodeproject.org/files/ENCFF774XDZ/@@download/ENCFF774XDZ.bed.gz mm10 released low read length insufficient read depth ENCFF913KKV bigBed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF774XDZ 11194827 ENCODE Processing Pipeline 2b1cad6cfd64fa229222770ace26bfe0 https://www.encodeproject.org/files/ENCFF913KKV/@@download/ENCFF913KKV.bigBed mm10 released low read length insufficient read depth ENCFF806PDR bed narrowPeak optimal idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF774XDZ, ENCFF846ENI, ENCFF900XVJ 449965 ENCODE Processing Pipeline ea223ed654bbe195a05dedec31ac60cc https://www.encodeproject.org/files/ENCFF806PDR/@@download/ENCFF806PDR.bed.gz mm10 released low read length insufficient read depth ENCFF535NUV bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF806PDR 837851 ENCODE Processing Pipeline 507e685ec82fbfb864d565ad591367b4 https://www.encodeproject.org/files/ENCFF535NUV/@@download/ENCFF535NUV.bigBed mm10 released low read length insufficient read depth ENCFF549UWI bigBed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF846ENI 10720309 ENCODE Processing Pipeline 54c5da06f301f1f768501f6cec7c6b9b https://www.encodeproject.org/files/ENCFF549UWI/@@download/ENCFF549UWI.bigBed mm10 released low read length insufficient read depth ENCFF001LGX bigBed broadPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE ENCFF001XZX 344110 Bing Ren, UCSD 22f89fa4721b138567988313ec4d52b3 https://www.encodeproject.org/files/ENCFF001LGX/@@download/ENCFF001LGX.bigBed mm9 archived low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF001LGY bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LHI 952323923 Bing Ren, UCSD dbd0a80ab54d71eb20205ac9ff36f808 https://www.encodeproject.org/files/ENCFF001LGY/@@download/ENCFF001LGY.bam mm9 archived low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF001LGZ bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LHL 1661864633 Bing Ren, UCSD 03e08a53e4905078e899e212849bf3df https://www.encodeproject.org/files/ENCFF001LGZ/@@download/ENCFF001LGZ.bam mm9 archived low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF001LHA bigWig signal ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 67818976 Bing Ren, UCSD 682d03928b2645be9b248a56c3a0c1d7 https://www.encodeproject.org/files/ENCFF001LHA/@@download/ENCFF001LHA.bigWig mm9 archived low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from ENCFF001LHI fastq reads ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 931311629 Bing Ren, UCSD 2da0411c22b9393055d1d41ffb68de45 https://www.encodeproject.org/files/ENCFF001LHI/@@download/ENCFF001LHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent control read length, borderline replicate concordance ENCFF001LHL fastq reads ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1614279285 Bing Ren, UCSD f439aa5b05e0aca8762219fe1fe1b77b https://www.encodeproject.org/files/ENCFF001LHL/@@download/ENCFF001LHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF001XZX bed broadPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 239102 Bing Ren, UCSD 79ec13c5468c7b41a276538b9cf8ed11 https://www.encodeproject.org/files/ENCFF001XZX/@@download/ENCFF001XZX.bed.gz mm9 archived low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from ENCFF309PSI bam unfiltered alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LHL, ENCFF018NEO 1793005027 ENCODE Processing Pipeline 9bae2125dcc424cc277f2d4c95ad67a3 https://www.encodeproject.org/files/ENCFF309PSI/@@download/ENCFF309PSI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF536DIG bam unfiltered alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LHI, ENCFF018NEO 1032191950 ENCODE Processing Pipeline cf2d868d1b62943b3c8b66441de97e0b https://www.encodeproject.org/files/ENCFF536DIG/@@download/ENCFF536DIG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF114YOO bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LHI, ENCFF018NEO 613018324 ENCODE Processing Pipeline 3cb74e6a5af792806b9bbd11fd8828b5 https://www.encodeproject.org/files/ENCFF114YOO/@@download/ENCFF114YOO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF257JDR bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LHL, ENCFF018NEO 1144350393 ENCODE Processing Pipeline 782de749288fac892aa26cd36ca5e195 https://www.encodeproject.org/files/ENCFF257JDR/@@download/ENCFF257JDR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF257CJH bigWig signal p-value ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF114YOO, ENCFF380RIM, ENCFF436OKP 416718786 ENCODE Processing Pipeline 942d4380522bffcbbec06e7124aa3da9 https://www.encodeproject.org/files/ENCFF257CJH/@@download/ENCFF257CJH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF580WJW bigWig signal p-value ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF114YOO, ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 523224684 ENCODE Processing Pipeline 14daed9cdd4e4c4c6bbfb0cb74cf4e57 https://www.encodeproject.org/files/ENCFF580WJW/@@download/ENCFF580WJW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF105OGD bed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF114YOO, ENCFF380RIM, ENCFF436OKP 4658333 ENCODE Processing Pipeline 0228a70054ec42866a4990039c920e4f https://www.encodeproject.org/files/ENCFF105OGD/@@download/ENCFF105OGD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF593FDX bed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF114YOO, ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 6251360 ENCODE Processing Pipeline a46da241edb4f2dfd7d6bacfa83f836a https://www.encodeproject.org/files/ENCFF593FDX/@@download/ENCFF593FDX.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF250IBP bigWig fold change over control ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF114YOO, ENCFF380RIM, ENCFF436OKP 301257801 ENCODE Processing Pipeline d06e8a5eb2500b3a3921611e02404deb https://www.encodeproject.org/files/ENCFF250IBP/@@download/ENCFF250IBP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF705BHR bed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 5578179 ENCODE Processing Pipeline f99183048abdeab0a6282b443ed4bdd7 https://www.encodeproject.org/files/ENCFF705BHR/@@download/ENCFF705BHR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF884VJT bigBed narrowPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF705BHR 10956363 ENCODE Processing Pipeline 8cabdc71b87a51881786f3b5f0c9f529 https://www.encodeproject.org/files/ENCFF884VJT/@@download/ENCFF884VJT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF641OBW bigBed narrowPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF105OGD 10609903 ENCODE Processing Pipeline a00425b144aa63f5ef0c0febb494ceaa https://www.encodeproject.org/files/ENCFF641OBW/@@download/ENCFF641OBW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF760SNT bigWig signal p-value ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 510144790 ENCODE Processing Pipeline e14938f27288c8937538bd5851768ed4 https://www.encodeproject.org/files/ENCFF760SNT/@@download/ENCFF760SNT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF480ACU bigWig fold change over control ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 451466858 ENCODE Processing Pipeline 2cf726ba3edc5534c5466b286ff4375c https://www.encodeproject.org/files/ENCFF480ACU/@@download/ENCFF480ACU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF575UNY bigWig fold change over control ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF114YOO, ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 616158195 ENCODE Processing Pipeline 4d07ef90b24489d400375e5f3149edcd https://www.encodeproject.org/files/ENCFF575UNY/@@download/ENCFF575UNY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF239DWZ bigBed narrowPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF593FDX 10916865 ENCODE Processing Pipeline 223c5583a9bdc2b0aed211624c48a7d6 https://www.encodeproject.org/files/ENCFF239DWZ/@@download/ENCFF239DWZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF874KZS bed narrowPeak optimal idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF105OGD, ENCFF547MET, ENCFF593FDX, ENCFF705BHR 67370 ENCODE Processing Pipeline 2fb03acd7c9db55b8f7525ceb9ffca4b https://www.encodeproject.org/files/ENCFF874KZS/@@download/ENCFF874KZS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF758SNP bed narrowPeak conservative idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF105OGD, ENCFF547MET, ENCFF593FDX, ENCFF705BHR 64299 ENCODE Processing Pipeline 16367c6d900b881ce76ec2b3ead4e730 https://www.encodeproject.org/files/ENCFF758SNP/@@download/ENCFF758SNP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF975NBR bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF758SNP 154970 ENCODE Processing Pipeline 04539a72b7ca6de2b8ef9a4604a05750 https://www.encodeproject.org/files/ENCFF975NBR/@@download/ENCFF975NBR.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF337PGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF874KZS 159116 ENCODE Processing Pipeline 8a481769d58d30f2516eb5c408f333f5 https://www.encodeproject.org/files/ENCFF337PGT/@@download/ENCFF337PGT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance ENCFF320KGQ fastq reads ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1074085655 Richard Myers, HAIB 1e743e6524539c8817bb146ada8c2a98 SRA:SRR5111179 https://www.encodeproject.org/files/ENCFF320KGQ/@@download/ENCFF320KGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF787LKE/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF024MXS fastq reads ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1407393091 Richard Myers, HAIB 0fd358519919412a579bfc33a07c063e SRA:SRR5111178 https://www.encodeproject.org/files/ENCFF024MXS/@@download/ENCFF024MXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF787LKE/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF670KVQ bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF320KGQ, ENCFF806TVZ 861215974 ENCODE Processing Pipeline 5aae8b0c47cc727a4fcb7c5fb75c94bd https://www.encodeproject.org/files/ENCFF670KVQ/@@download/ENCFF670KVQ.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF567NZA bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF024MXS, ENCFF806TVZ 1106855829 ENCODE Processing Pipeline 10bf525a791724e1a9e951c130c5019d https://www.encodeproject.org/files/ENCFF567NZA/@@download/ENCFF567NZA.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF880IOE bam unfiltered alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1475148937 ENCODE Processing Pipeline f73c770a24afa036c8b43690d3758fde https://www.encodeproject.org/files/ENCFF880IOE/@@download/ENCFF880IOE.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF682ZRK bam unfiltered alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 1133298867 ENCODE Processing Pipeline b2703240814894c4ab033995f4ff030d https://www.encodeproject.org/files/ENCFF682ZRK/@@download/ENCFF682ZRK.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF669TDH bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 861135818 ENCODE Processing Pipeline 06492bff37c8cc8b15dafefc8d0d556b https://www.encodeproject.org/files/ENCFF669TDH/@@download/ENCFF669TDH.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF748CWC bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1106721174 ENCODE Processing Pipeline 46516b80c0e373adce07483fda8b1f8c https://www.encodeproject.org/files/ENCFF748CWC/@@download/ENCFF748CWC.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF145CPH bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 320059809 ENCODE Processing Pipeline 92aaebe184a2d6753872e1dc66434be7 https://www.encodeproject.org/files/ENCFF145CPH/@@download/ENCFF145CPH.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF665MXC bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 318040832 ENCODE Processing Pipeline 26198951d656988797b2f1253c9cc25a https://www.encodeproject.org/files/ENCFF665MXC/@@download/ENCFF665MXC.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF036ACY bed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 5264286 ENCODE Processing Pipeline 602519cd7874f8d4abbfbe628a067f61 https://www.encodeproject.org/files/ENCFF036ACY/@@download/ENCFF036ACY.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF640IKM bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 308663630 ENCODE Processing Pipeline caf30eebdb1df44671eaf3539e6406ec https://www.encodeproject.org/files/ENCFF640IKM/@@download/ENCFF640IKM.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF273HAY bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 285327551 ENCODE Processing Pipeline 457b072b628ec8d2b909bb7550794602 https://www.encodeproject.org/files/ENCFF273HAY/@@download/ENCFF273HAY.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF677WOX bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 385336833 ENCODE Processing Pipeline 2660f8b15a242c0c83a4b63995f7f06e https://www.encodeproject.org/files/ENCFF677WOX/@@download/ENCFF677WOX.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF636SDF bed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 5135103 ENCODE Processing Pipeline bc7543272dc050c215c13591edec0bfc https://www.encodeproject.org/files/ENCFF636SDF/@@download/ENCFF636SDF.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF251FHP bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 569653823 ENCODE Processing Pipeline 0753352294f2fe7f79ec6444c73f082c https://www.encodeproject.org/files/ENCFF251FHP/@@download/ENCFF251FHP.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF242NJN bed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 4891991 ENCODE Processing Pipeline 9d8ec6beac5b14cc2b3196d75aa8b69b https://www.encodeproject.org/files/ENCFF242NJN/@@download/ENCFF242NJN.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF045EUI bigBed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF242NJN 10831588 ENCODE Processing Pipeline 7be662de11b29d1ab9ab040ea94abc3b https://www.encodeproject.org/files/ENCFF045EUI/@@download/ENCFF045EUI.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF260XLJ bigBed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF036ACY 11025982 ENCODE Processing Pipeline 7d19c63da459aa40802057adb8982efd https://www.encodeproject.org/files/ENCFF260XLJ/@@download/ENCFF260XLJ.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF268HZV bed narrowPeak conservative idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF036ACY, ENCFF242NJN, ENCFF547MET, ENCFF636SDF 964419 ENCODE Processing Pipeline d26c774b305c957972ed94cf1ba7c0b1 https://www.encodeproject.org/files/ENCFF268HZV/@@download/ENCFF268HZV.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF731MTR bigBed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF636SDF 9688369 ENCODE Processing Pipeline 0fc7fe8285cf7740de5b26e1ec7f8d6b https://www.encodeproject.org/files/ENCFF731MTR/@@download/ENCFF731MTR.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF852CPY bigBed narrowPeak conservative idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF268HZV 1946346 ENCODE Processing Pipeline ffcfd6cf34a402ae43c736446eb8f7d0 https://www.encodeproject.org/files/ENCFF852CPY/@@download/ENCFF852CPY.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF308FHB bed narrowPeak optimal idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF036ACY, ENCFF242NJN, ENCFF547MET, ENCFF636SDF 1008807 ENCODE Processing Pipeline 18c6f76162003817c8615d42b2228fbe https://www.encodeproject.org/files/ENCFF308FHB/@@download/ENCFF308FHB.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF868NVS bigBed narrowPeak optimal idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF308FHB 2011236 ENCODE Processing Pipeline 046173a88a9a3e5b331df3829732cc6c https://www.encodeproject.org/files/ENCFF868NVS/@@download/ENCFF868NVS.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001NJA bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NJE 453933185 Michael Snyder, Stanford d76e76640164a22f4aeec1e76e1c815b https://www.encodeproject.org/files/ENCFF001NJA/@@download/ENCFF001NJA.bam mm9 released low read length, low read depth ENCFF001NJB bigBed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIG 1054002 Michael Snyder, Stanford 436cfd8a4325177bce8019bd00ff0e0e https://www.encodeproject.org/files/ENCFF001NJB/@@download/ENCFF001NJB.bigBed mm9 released low read length, low read depth ENCFF001NJC bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NJG 423220263 Michael Snyder, Stanford 5eba895f635ab04d96e75ecb671edd58 https://www.encodeproject.org/files/ENCFF001NJC/@@download/ENCFF001NJC.bam mm9 released low read length, low read depth ENCFF001NJE fastq reads ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 884769813 Michael Snyder, Stanford 48ffacbf3eabf41a5e245f70ad680215 https://www.encodeproject.org/files/ENCFF001NJE/@@download/ENCFF001NJE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001NJG fastq reads ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 834214375 Michael Snyder, Stanford d46c6270ab6b8ca1b7a5a9ae3a760f6c https://www.encodeproject.org/files/ENCFF001NJG/@@download/ENCFF001NJG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth ENCFF001NJI bigWig signal ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJA, ENCFF001NJC 335882901 Michael Snyder, Stanford 8746777158b111bd66b2c9ece8c287ab https://www.encodeproject.org/files/ENCFF001NJI/@@download/ENCFF001NJI.bigWig mm9 released low read length, low read depth ENCFF001YIG bed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJA, ENCFF001NJC 415807 Michael Snyder, Stanford ab4eb2af283a1792d09af4449be00956 https://www.encodeproject.org/files/ENCFF001YIG/@@download/ENCFF001YIG.bed.gz mm9 released low read length, low read depth ENCFF365UBS bam unfiltered alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJE, ENCFF018NEO 984365746 ENCODE Processing Pipeline 4ea3d98f595b30bd70ed72cb292ee9e9 https://www.encodeproject.org/files/ENCFF365UBS/@@download/ENCFF365UBS.bam mm10 released low read length, low read depth ENCFF034IRP bam unfiltered alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJG, ENCFF018NEO 927550946 ENCODE Processing Pipeline c7387203f50685ccec54d1e41190a41b https://www.encodeproject.org/files/ENCFF034IRP/@@download/ENCFF034IRP.bam mm10 released low read length, low read depth ENCFF202TYU bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJG, ENCFF018NEO 630006638 ENCODE Processing Pipeline 59fea24ecf173545cad05e19d4a614f3 https://www.encodeproject.org/files/ENCFF202TYU/@@download/ENCFF202TYU.bam mm10 released low read length, low read depth ENCFF174MFL bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJE, ENCFF018NEO 685199691 ENCODE Processing Pipeline a9c0deaa5880b710483fc38dd018c7c1 https://www.encodeproject.org/files/ENCFF174MFL/@@download/ENCFF174MFL.bam mm10 released low read length, low read depth ENCFF313IVE bigWig signal p-value ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF174MFL, ENCFF339ZWC 228844211 ENCODE Processing Pipeline 82a9e36257a0392e369e2fceab853ef0 https://www.encodeproject.org/files/ENCFF313IVE/@@download/ENCFF313IVE.bigWig mm10 released low read length, low read depth ENCFF191SOA bigWig signal p-value ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF202TYU, ENCFF339ZWC 230390915 ENCODE Processing Pipeline 9957e7fac5b1e34b2e610d7aa7a7d3cc https://www.encodeproject.org/files/ENCFF191SOA/@@download/ENCFF191SOA.bigWig mm10 released low read length, low read depth ENCFF274UMU bigWig fold change over control ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF174MFL, ENCFF339ZWC 275375837 ENCODE Processing Pipeline fa0e3ad011c763d509c2125b80ee3dad https://www.encodeproject.org/files/ENCFF274UMU/@@download/ENCFF274UMU.bigWig mm10 released low read length, low read depth ENCFF805NUN bigWig signal p-value ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF174MFL, ENCFF202TYU, ENCFF339ZWC 205493342 ENCODE Processing Pipeline b3b8ea36e74e0b6b3aab8069c91c8d5b https://www.encodeproject.org/files/ENCFF805NUN/@@download/ENCFF805NUN.bigWig mm10 released low read length, low read depth ENCFF715NQF bigWig fold change over control ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF202TYU, ENCFF339ZWC 261189217 ENCODE Processing Pipeline 7cc62e807e67fd0ac238f6f525a25f2d https://www.encodeproject.org/files/ENCFF715NQF/@@download/ENCFF715NQF.bigWig mm10 released low read length, low read depth ENCFF850JWX bed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF174MFL, ENCFF339ZWC 5011809 ENCODE Processing Pipeline 3ad4aa021d3f8d25de00fa6fa27c3949 https://www.encodeproject.org/files/ENCFF850JWX/@@download/ENCFF850JWX.bed.gz mm10 released low read length, low read depth ENCFF507OCS bed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF174MFL, ENCFF202TYU, ENCFF339ZWC 5653467 ENCODE Processing Pipeline 6d3e84d244c610272384c63aee0d23df https://www.encodeproject.org/files/ENCFF507OCS/@@download/ENCFF507OCS.bed.gz mm10 released low read length, low read depth ENCFF775LKP bigWig fold change over control ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF174MFL, ENCFF202TYU, ENCFF339ZWC 460088093 ENCODE Processing Pipeline dc0e50db05c803860a1cada02bf2dc6f https://www.encodeproject.org/files/ENCFF775LKP/@@download/ENCFF775LKP.bigWig mm10 released low read length, low read depth ENCFF915TKM bed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF202TYU, ENCFF339ZWC 4887758 ENCODE Processing Pipeline 66b9857514f55657888914e48a6c132d https://www.encodeproject.org/files/ENCFF915TKM/@@download/ENCFF915TKM.bed.gz mm10 released low read length, low read depth ENCFF707CGG bigBed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF915TKM 10439814 ENCODE Processing Pipeline 17dd3383c77e9e4765ec7952c591e964 https://www.encodeproject.org/files/ENCFF707CGG/@@download/ENCFF707CGG.bigBed mm10 released low read length, low read depth ENCFF653CHL bigBed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF850JWX 12722857 ENCODE Processing Pipeline 4decf1cbb9d572d51b97c1efe710340c https://www.encodeproject.org/files/ENCFF653CHL/@@download/ENCFF653CHL.bigBed mm10 released low read length, low read depth ENCFF459OJI bed narrowPeak optimal idr thresholded peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF507OCS, ENCFF547MET, ENCFF850JWX, ENCFF915TKM 357561 ENCODE Processing Pipeline fa24b929d1a786ccbdf404690caad384 https://www.encodeproject.org/files/ENCFF459OJI/@@download/ENCFF459OJI.bed.gz mm10 released low read length, low read depth ENCFF655RTJ bigBed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF507OCS 12945251 ENCODE Processing Pipeline 26b9b4896edaa69de1c30cb37593f01f https://www.encodeproject.org/files/ENCFF655RTJ/@@download/ENCFF655RTJ.bigBed mm10 released low read length, low read depth ENCFF104SDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF459OJI 832135 ENCODE Processing Pipeline 2dc962405a4ddc9fdd40f94e9713473b https://www.encodeproject.org/files/ENCFF104SDA/@@download/ENCFF104SDA.bigBed mm10 released low read length, low read depth ENCFF042TOB fastq reads ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1299857200 Richard Myers, HAIB a45959827f92b32f32c35f0de994e2e9 SRA:SRR5112068 https://www.encodeproject.org/files/ENCFF042TOB/@@download/ENCFF042TOB.fastq.gz Illumina HiSeq 2000 /files/ENCFF798MRO/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF299GTA fastq reads ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 982913959 Richard Myers, HAIB 5a1cc3646d8534b236e53acafb03dfde SRA:SRR5112069 https://www.encodeproject.org/files/ENCFF299GTA/@@download/ENCFF299GTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF314WCC/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF951HWD bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF299GTA 802123234 ENCODE Processing Pipeline 0f641534e8c230c05c6ef7a72527df05 https://www.encodeproject.org/files/ENCFF951HWD/@@download/ENCFF951HWD.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF701RFU bam unfiltered alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF042TOB 1407395795 ENCODE Processing Pipeline 45cb5e123000675304e9b54d3def1084 https://www.encodeproject.org/files/ENCFF701RFU/@@download/ENCFF701RFU.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF945QTD bam unfiltered alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF299GTA 1084718341 ENCODE Processing Pipeline 5c35f6624b21a3bd4395379d894a66c7 https://www.encodeproject.org/files/ENCFF945QTD/@@download/ENCFF945QTD.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF298QFB bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF042TOB 1008468872 ENCODE Processing Pipeline 043847caf9a1174e107b33b9f3b8afdf https://www.encodeproject.org/files/ENCFF298QFB/@@download/ENCFF298QFB.bam mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF419MOZ bigWig signal p-value ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ 576823022 ENCODE Processing Pipeline 58fa1c72f2386095a64a24d29ca7307c https://www.encodeproject.org/files/ENCFF419MOZ/@@download/ENCFF419MOZ.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF971WWG bigWig signal p-value ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF554RMZ, ENCFF951HWD 452936680 ENCODE Processing Pipeline 9aa4cd4f14e650bbc7333d963bc16b1b https://www.encodeproject.org/files/ENCFF971WWG/@@download/ENCFF971WWG.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF259OPA bigWig signal p-value ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ, ENCFF951HWD 797513999 ENCODE Processing Pipeline fdc8665dd678d42b074960d3333d14b6 https://www.encodeproject.org/files/ENCFF259OPA/@@download/ENCFF259OPA.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF492FYK bigWig fold change over control ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF554RMZ, ENCFF951HWD 408720921 ENCODE Processing Pipeline e55bbdd25d4ee139f554c2e37b2fac28 https://www.encodeproject.org/files/ENCFF492FYK/@@download/ENCFF492FYK.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF563DIX bed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ 6210782 ENCODE Processing Pipeline 654303876aa405dddc9f473aa1359aca https://www.encodeproject.org/files/ENCFF563DIX/@@download/ENCFF563DIX.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF771SCO bed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ, ENCFF951HWD 6703209 ENCODE Processing Pipeline bc507990ad9d2002c4ca6f2db26560e6 https://www.encodeproject.org/files/ENCFF771SCO/@@download/ENCFF771SCO.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF588WUZ bigWig fold change over control ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ 577217845 ENCODE Processing Pipeline 2aed24895e7586aaf9e1ded78eb4e7f1 https://www.encodeproject.org/files/ENCFF588WUZ/@@download/ENCFF588WUZ.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF041DVE bigBed narrowPeak peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF771SCO 13353058 ENCODE Processing Pipeline e3667496268d004c629ac6edd7c98260 https://www.encodeproject.org/files/ENCFF041DVE/@@download/ENCFF041DVE.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF499JRK bed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF554RMZ, ENCFF951HWD 5421510 ENCODE Processing Pipeline 16709785b46f6172a6f853e5fc5e1156 https://www.encodeproject.org/files/ENCFF499JRK/@@download/ENCFF499JRK.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF338GTZ bigWig fold change over control ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ, ENCFF951HWD 851171952 ENCODE Processing Pipeline 98fd057805cf46af525a62eeff062573 https://www.encodeproject.org/files/ENCFF338GTZ/@@download/ENCFF338GTZ.bigWig mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF089WCL bigBed narrowPeak peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF563DIX 13324707 ENCODE Processing Pipeline 0dc0455854be8596eb8d72295602aec8 https://www.encodeproject.org/files/ENCFF089WCL/@@download/ENCFF089WCL.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF312COK bigBed narrowPeak peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF499JRK 13241120 ENCODE Processing Pipeline 8749de4fe3b71152d70e58d5f21d419a https://www.encodeproject.org/files/ENCFF312COK/@@download/ENCFF312COK.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF625YHS bed narrowPeak conservative idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF499JRK, ENCFF547MET, ENCFF563DIX, ENCFF771SCO 290180 ENCODE Processing Pipeline c01e8afa0b1270305106568dda0b7ac8 https://www.encodeproject.org/files/ENCFF625YHS/@@download/ENCFF625YHS.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF751ELG bigBed narrowPeak conservative idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF625YHS 587847 ENCODE Processing Pipeline 53997012c3400fe63d99f9fbeafdcd83 https://www.encodeproject.org/files/ENCFF751ELG/@@download/ENCFF751ELG.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF320ZSC bed narrowPeak optimal idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF499JRK, ENCFF547MET, ENCFF563DIX, ENCFF771SCO 320977 ENCODE Processing Pipeline 0f513be9893c8de8f73b61ec1d824f37 https://www.encodeproject.org/files/ENCFF320ZSC/@@download/ENCFF320ZSC.bed.gz mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF645JCX bigBed narrowPeak optimal idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF320ZSC 635216 ENCODE Processing Pipeline b86c59bec3f607c13ae169414df540f5 https://www.encodeproject.org/files/ENCFF645JCX/@@download/ENCFF645JCX.bigBed mm10 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF001LPC bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPR 2045869124 Bing Ren, UCSD 8d89b215c58910af8fbfef861cca760e https://www.encodeproject.org/files/ENCFF001LPC/@@download/ENCFF001LPC.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001LPD bigBed broadPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAT 312183 Bing Ren, UCSD 349a17f74f73e11af3af8be36c54f251 https://www.encodeproject.org/files/ENCFF001LPD/@@download/ENCFF001LPD.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001LPF bigWig signal ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPC, ENCFF001LPG 63780380 Bing Ren, UCSD 54158dcb7a1d521905000ba266fdba7d https://www.encodeproject.org/files/ENCFF001LPF/@@download/ENCFF001LPF.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001LPG bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPN 1650043139 Bing Ren, UCSD 452cbbe8d1f5a7218591bb0694c9dbe4 https://www.encodeproject.org/files/ENCFF001LPG/@@download/ENCFF001LPG.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001LPN fastq reads ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1770770669 Bing Ren, UCSD e90e9e4a761b33e80d57885159d92fe0 https://www.encodeproject.org/files/ENCFF001LPN/@@download/ENCFF001LPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001LPR fastq reads ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 2228558413 Bing Ren, UCSD 7f389b33cd3086d7ed3872cc70101686 https://www.encodeproject.org/files/ENCFF001LPR/@@download/ENCFF001LPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001YAT bed broadPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPC, ENCFF001LPG 201407 Bing Ren, UCSD dfbeaeb7fcef4137087c7820c1e466a7 https://www.encodeproject.org/files/ENCFF001YAT/@@download/ENCFF001YAT.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF367BFL bam unfiltered alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPN, ENCFF018NEO 1684722730 ENCODE Processing Pipeline f0dcd98efe6664eec6650d1f212f8bec https://www.encodeproject.org/files/ENCFF367BFL/@@download/ENCFF367BFL.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF079BHN bam unfiltered alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPR, ENCFF018NEO 2069223041 ENCODE Processing Pipeline 8c2bfbd7d930defce86c2e2a4b2e659e https://www.encodeproject.org/files/ENCFF079BHN/@@download/ENCFF079BHN.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF265GQV bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPN, ENCFF018NEO 315183523 ENCODE Processing Pipeline 6d8270688bf2441c23374d824d88410d https://www.encodeproject.org/files/ENCFF265GQV/@@download/ENCFF265GQV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF824OPU bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPR, ENCFF018NEO 292966100 ENCODE Processing Pipeline 86340943f67e7c298b28e687e12496cb https://www.encodeproject.org/files/ENCFF824OPU/@@download/ENCFF824OPU.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF478IAL bigWig signal p-value ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 196116639 ENCODE Processing Pipeline e333949b166f45266a10050b8ac733ca https://www.encodeproject.org/files/ENCFF478IAL/@@download/ENCFF478IAL.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF153FEI bigWig signal p-value ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF265GQV, ENCFF780TFB 144729732 ENCODE Processing Pipeline a81ffdc0a48dc202bd478474427623e1 https://www.encodeproject.org/files/ENCFF153FEI/@@download/ENCFF153FEI.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF183BFJ bigWig signal p-value ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF265GQV, ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 237142003 ENCODE Processing Pipeline 47b44966a4642948e480befcbfe48327 https://www.encodeproject.org/files/ENCFF183BFJ/@@download/ENCFF183BFJ.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF218UAZ bigWig fold change over control ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF265GQV, ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 261111332 ENCODE Processing Pipeline 1ec8a1f318873e4fc2eaaad851c9728d https://www.encodeproject.org/files/ENCFF218UAZ/@@download/ENCFF218UAZ.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF538WYG bigBed narrowPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF007TXO 9769150 ENCODE Processing Pipeline bf250b750d2903ad782f37414fdd3b0f https://www.encodeproject.org/files/ENCFF538WYG/@@download/ENCFF538WYG.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF039DWK bed narrowPeak optimal idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF007TXO, ENCFF388WCL, ENCFF547MET, ENCFF941FIA 301620 ENCODE Processing Pipeline 0e2cb01687976da10bfa79b0b3f2fc35 https://www.encodeproject.org/files/ENCFF039DWK/@@download/ENCFF039DWK.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF251PXX bigWig fold change over control ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF265GQV, ENCFF780TFB 131883856 ENCODE Processing Pipeline a66b63114fadf6551cd47082350ecdad https://www.encodeproject.org/files/ENCFF251PXX/@@download/ENCFF251PXX.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF320NQV bigBed narrowPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF388WCL 11152521 ENCODE Processing Pipeline aa05fbcc99e52193eb59b23d88e000b6 https://www.encodeproject.org/files/ENCFF320NQV/@@download/ENCFF320NQV.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF757NKX bigBed narrowPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF941FIA 12775787 ENCODE Processing Pipeline 2b17f60aa776c05c3d758354ffd5af1f https://www.encodeproject.org/files/ENCFF757NKX/@@download/ENCFF757NKX.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF599FOL bigWig fold change over control ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 151543211 ENCODE Processing Pipeline 09e25248241d43953dceeb2c5e2121d7 https://www.encodeproject.org/files/ENCFF599FOL/@@download/ENCFF599FOL.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF007TXO bed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF265GQV, ENCFF780TFB 4220812 ENCODE Processing Pipeline 2ef8feb56a11097bd2b11f016b65277e https://www.encodeproject.org/files/ENCFF007TXO/@@download/ENCFF007TXO.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF941FIA bed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF265GQV, ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 5772863 ENCODE Processing Pipeline d52585eab873a383eed08c1203c51380 https://www.encodeproject.org/files/ENCFF941FIA/@@download/ENCFF941FIA.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF909JGW bed narrowPeak conservative idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF007TXO, ENCFF388WCL, ENCFF547MET, ENCFF941FIA 287591 ENCODE Processing Pipeline d052e4bb5b95fc8f62f9ee1282c1e8c2 https://www.encodeproject.org/files/ENCFF909JGW/@@download/ENCFF909JGW.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF077RTD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF909JGW 726202 ENCODE Processing Pipeline 7c95e0e8840f85f8e3d5454b23f6a2f1 https://www.encodeproject.org/files/ENCFF077RTD/@@download/ENCFF077RTD.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF614PAZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF039DWK 752485 ENCODE Processing Pipeline ec5dc61abd9cf5183a48648f98b4c053 https://www.encodeproject.org/files/ENCFF614PAZ/@@download/ENCFF614PAZ.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF388WCL bed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 4627030 ENCODE Processing Pipeline 9d93c9f3cef2428dd3badf1b8c8c3948 https://www.encodeproject.org/files/ENCFF388WCL/@@download/ENCFF388WCL.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, poor library complexity ENCFF001NIH bigBed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YID 1558980 Michael Snyder, Stanford f3e0297a882be96dd23d5fcb4c66c955 https://www.encodeproject.org/files/ENCFF001NIH/@@download/ENCFF001NIH.bigBed mm9 released low read length ENCFF001NII bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NJD 462164655 Michael Snyder, Stanford f9ede47d9acda6f5c896d398e10163cd https://www.encodeproject.org/files/ENCFF001NII/@@download/ENCFF001NII.bam mm9 released low read length ENCFF001NIJ bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NIZ 540191490 Michael Snyder, Stanford e39e45cff731d17df82ac700932bdeac https://www.encodeproject.org/files/ENCFF001NIJ/@@download/ENCFF001NIJ.bam mm9 released low read length ENCFF001NIK bigWig signal ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NII, ENCFF001NIJ 375727662 Michael Snyder, Stanford 562b6ebd3049c65483939a8adb7dded6 https://www.encodeproject.org/files/ENCFF001NIK/@@download/ENCFF001NIK.bigWig mm9 released low read length ENCFF001NIZ fastq reads ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1080831141 Michael Snyder, Stanford ca7c170fba23a32445ce86d1ae6abc75 https://www.encodeproject.org/files/ENCFF001NIZ/@@download/ENCFF001NIZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length ENCFF001NJD fastq reads ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1543164986 Michael Snyder, Stanford a4c2352361c67e5c5360977efbc2bd56 https://www.encodeproject.org/files/ENCFF001NJD/@@download/ENCFF001NJD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length ENCFF001YID bed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NII, ENCFF001NIJ 639901 Michael Snyder, Stanford 4885ce2e1949fdc180db3e35f4f63bcf https://www.encodeproject.org/files/ENCFF001YID/@@download/ENCFF001YID.bed.gz mm9 released low read length ENCFF322BDJ bam unfiltered alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJD, ENCFF018NEO 1784972204 ENCODE Processing Pipeline 690d9ffa8821af5b873a81b7b5d05838 https://www.encodeproject.org/files/ENCFF322BDJ/@@download/ENCFF322BDJ.bam mm10 released low read length ENCFF505CTW bam unfiltered alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIZ, ENCFF018NEO 1281061048 ENCODE Processing Pipeline 4fc792ae2ef89b49c3484fdce4f2eb71 https://www.encodeproject.org/files/ENCFF505CTW/@@download/ENCFF505CTW.bam mm10 released low read length ENCFF371ZUN bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJD, ENCFF018NEO 1164189550 ENCODE Processing Pipeline ae5d1b8a2fb2e0f55cd7755d82cd60fd https://www.encodeproject.org/files/ENCFF371ZUN/@@download/ENCFF371ZUN.bam mm10 released low read length ENCFF459CWX bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIZ, ENCFF018NEO 892949903 ENCODE Processing Pipeline fa836d267ad4d73feb8309d0ad79438e https://www.encodeproject.org/files/ENCFF459CWX/@@download/ENCFF459CWX.bam mm10 released low read length ENCFF976JML bigWig signal p-value ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF371ZUN 225203197 ENCODE Processing Pipeline 2fc78c986ff50970d018db42056b38d4 https://www.encodeproject.org/files/ENCFF976JML/@@download/ENCFF976JML.bigWig mm10 released low read length ENCFF090UQR bigWig signal p-value ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF371ZUN, ENCFF459CWX 219730592 ENCODE Processing Pipeline 0498bae0f83224342dd586a8f65f7728 https://www.encodeproject.org/files/ENCFF090UQR/@@download/ENCFF090UQR.bigWig mm10 released low read length ENCFF690JIX bigWig signal p-value ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF459CWX 216496223 ENCODE Processing Pipeline 7db25df448c85bf1b978bb5bf64d32a2 https://www.encodeproject.org/files/ENCFF690JIX/@@download/ENCFF690JIX.bigWig mm10 released low read length ENCFF089GDK bigWig fold change over control ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF371ZUN 401353070 ENCODE Processing Pipeline 622e42b47cbdfe6286d5e82c092edce2 https://www.encodeproject.org/files/ENCFF089GDK/@@download/ENCFF089GDK.bigWig mm10 released low read length ENCFF252PZQ bigWig fold change over control ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF459CWX 341096295 ENCODE Processing Pipeline 69cc3945c6d7193ccf3f1a377be239d7 https://www.encodeproject.org/files/ENCFF252PZQ/@@download/ENCFF252PZQ.bigWig mm10 released low read length ENCFF291HYO bigWig fold change over control ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF371ZUN, ENCFF459CWX 648435994 ENCODE Processing Pipeline 9c1ef1b81fbd510bd94731ad1ebf9a05 https://www.encodeproject.org/files/ENCFF291HYO/@@download/ENCFF291HYO.bigWig mm10 released low read length ENCFF802FDG bed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF371ZUN 5571226 ENCODE Processing Pipeline 2eda0b4c3999d3cd263340721b101c16 https://www.encodeproject.org/files/ENCFF802FDG/@@download/ENCFF802FDG.bed.gz mm10 released low read length ENCFF291AVC bed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF459CWX 5514492 ENCODE Processing Pipeline fbe396d9a6ddfe0cbe8f6739f6b26baa https://www.encodeproject.org/files/ENCFF291AVC/@@download/ENCFF291AVC.bed.gz mm10 released low read length ENCFF834RWN bigBed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF802FDG 12905986 ENCODE Processing Pipeline cfb2ec9c1e2c9c6f8f06991e35aa313d https://www.encodeproject.org/files/ENCFF834RWN/@@download/ENCFF834RWN.bigBed mm10 released low read length ENCFF331PXR bed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF371ZUN, ENCFF459CWX 6168633 ENCODE Processing Pipeline 97cc26a4eb3d003b6917ac525ca673d6 https://www.encodeproject.org/files/ENCFF331PXR/@@download/ENCFF331PXR.bed.gz mm10 released low read length ENCFF450BJH bigBed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF291AVC 12905927 ENCODE Processing Pipeline d0086c764987cd1136a72379d009c4e8 https://www.encodeproject.org/files/ENCFF450BJH/@@download/ENCFF450BJH.bigBed mm10 released low read length ENCFF380YCS bigBed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF331PXR 12870801 ENCODE Processing Pipeline 376b06ef50508ecc69344cf28d4cadc0 https://www.encodeproject.org/files/ENCFF380YCS/@@download/ENCFF380YCS.bigBed mm10 released low read length ENCFF684GLM bed narrowPeak conservative idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF291AVC, ENCFF331PXR, ENCFF547MET, ENCFF802FDG 546850 ENCODE Processing Pipeline e40b21861c50927434a9cff8b43e7848 https://www.encodeproject.org/files/ENCFF684GLM/@@download/ENCFF684GLM.bed.gz mm10 released low read length ENCFF033QFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF684GLM 1174933 ENCODE Processing Pipeline a77759cbe2ae833e1854a403d9f4afed https://www.encodeproject.org/files/ENCFF033QFW/@@download/ENCFF033QFW.bigBed mm10 released low read length ENCFF228CPY bed narrowPeak optimal idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF291AVC, ENCFF331PXR, ENCFF547MET, ENCFF802FDG 561836 ENCODE Processing Pipeline ddfb2d963406a72df84e7e836049202f https://www.encodeproject.org/files/ENCFF228CPY/@@download/ENCFF228CPY.bed.gz mm10 released low read length ENCFF843QVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF228CPY 1202230 ENCODE Processing Pipeline ca1e0836f307d6e3255ec571f1dafc77 https://www.encodeproject.org/files/ENCFF843QVM/@@download/ENCFF843QVM.bigBed mm10 released low read length ENCFF880XUQ fastq reads ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 775223496 Michael Snyder, Stanford 8bd913addcb569e114dfeff805d5e49f https://www.encodeproject.org/files/ENCFF880XUQ/@@download/ENCFF880XUQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF432YTR fastq reads ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 802732122 Michael Snyder, Stanford c2ea64b7a23d2d25fab9e701764853ba https://www.encodeproject.org/files/ENCFF432YTR/@@download/ENCFF432YTR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF230ACF bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF880XUQ 715120655 Michael Snyder, Stanford 21b1af58bc30e0586c9b25700725e311 https://www.encodeproject.org/files/ENCFF230ACF/@@download/ENCFF230ACF.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF042EWQ bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF432YTR 771746957 Michael Snyder, Stanford 66062b7fb25a7f58dee82d823678080e https://www.encodeproject.org/files/ENCFF042EWQ/@@download/ENCFF042EWQ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF739EJW bed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF042EWQ, ENCFF230ACF 657259 Michael Snyder, Stanford df8eeb90d4aa2f3c816e28627c31d790 https://www.encodeproject.org/files/ENCFF739EJW/@@download/ENCFF739EJW.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF931NAC bigBed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF739EJW 1422446 ENCODE Consortium 4dae1255b28aab81e4d09bf023864a95 https://www.encodeproject.org/files/ENCFF931NAC/@@download/ENCFF931NAC.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF357XKZ bam unfiltered alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF880XUQ 997649986 ENCODE Processing Pipeline a8240389ddee9921de4c2f7e51b83ad0 https://www.encodeproject.org/files/ENCFF357XKZ/@@download/ENCFF357XKZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF840KKY bam unfiltered alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF432YTR 1061964191 ENCODE Processing Pipeline e84131ef5c126d66cd9d4fca45ca322c https://www.encodeproject.org/files/ENCFF840KKY/@@download/ENCFF840KKY.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF881FSZ bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF432YTR 661282685 ENCODE Processing Pipeline 1269770bf0dc7c37d89fdfc73e2b7116 https://www.encodeproject.org/files/ENCFF881FSZ/@@download/ENCFF881FSZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF352KWE bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF880XUQ 496561585 ENCODE Processing Pipeline c759df7ff642b0907834e58a76474926 https://www.encodeproject.org/files/ENCFF352KWE/@@download/ENCFF352KWE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF232FKR bigWig fold change over control ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF352KWE 233240676 ENCODE Processing Pipeline 5dece6c98b3eb1a95d8e72a958bcbdaa https://www.encodeproject.org/files/ENCFF232FKR/@@download/ENCFF232FKR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF267GRE bigWig signal p-value ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF352KWE 255837762 ENCODE Processing Pipeline 926a63cf3d2181454b80fd5fc4c819c1 https://www.encodeproject.org/files/ENCFF267GRE/@@download/ENCFF267GRE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF474MDF bigWig signal p-value ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF352KWE, ENCFF881FSZ 309835357 ENCODE Processing Pipeline 05dea9c6d6784051fb8f7192ea9e7b82 https://www.encodeproject.org/files/ENCFF474MDF/@@download/ENCFF474MDF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF110YJQ bigWig fold change over control ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF881FSZ 297875008 ENCODE Processing Pipeline 629d13bce7834d684ee381de29071f70 https://www.encodeproject.org/files/ENCFF110YJQ/@@download/ENCFF110YJQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF770ZYG bigBed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF705OQG 10450113 ENCODE Processing Pipeline 5ed39e847e0c43d52fbde65ec1436100 https://www.encodeproject.org/files/ENCFF770ZYG/@@download/ENCFF770ZYG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF285UPG bigWig signal p-value ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF881FSZ 323255137 ENCODE Processing Pipeline 82ba7f744222aa1042252a0919a3644e https://www.encodeproject.org/files/ENCFF285UPG/@@download/ENCFF285UPG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF061ZVH bigBed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF881QFU 10444544 ENCODE Processing Pipeline 385fd2b45531ab4b20721d7a6c269c54 https://www.encodeproject.org/files/ENCFF061ZVH/@@download/ENCFF061ZVH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF703UMY bigBed narrowPeak conservative idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF444MFD 1178202 ENCODE Processing Pipeline b9861be19c793190575d26c9d7c30572 https://www.encodeproject.org/files/ENCFF703UMY/@@download/ENCFF703UMY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF894YTN bigWig fold change over control ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF352KWE, ENCFF881FSZ 428222762 ENCODE Processing Pipeline c610114bb3126828f7084f76046f2fbf https://www.encodeproject.org/files/ENCFF894YTN/@@download/ENCFF894YTN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF551TDS bed narrowPeak optimal idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF547MET, ENCFF619BMP, ENCFF705OQG, ENCFF881QFU 684063 ENCODE Processing Pipeline 2ab1c017e0ed3cf2f7be3af7f0515869 https://www.encodeproject.org/files/ENCFF551TDS/@@download/ENCFF551TDS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF705OQG bed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF881FSZ 4943242 ENCODE Processing Pipeline fe3327d04929b1d2d5f3cc3c77042182 https://www.encodeproject.org/files/ENCFF705OQG/@@download/ENCFF705OQG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF444MFD bed narrowPeak conservative idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF547MET, ENCFF619BMP, ENCFF705OQG, ENCFF881QFU 622866 ENCODE Processing Pipeline 4c365d99cf84c2d44f4c72875d8da603 https://www.encodeproject.org/files/ENCFF444MFD/@@download/ENCFF444MFD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF619BMP bed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF352KWE, ENCFF881FSZ 5668888 ENCODE Processing Pipeline 74d0527c3ed36ed0b51a94106af5232d https://www.encodeproject.org/files/ENCFF619BMP/@@download/ENCFF619BMP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF901QFM bigBed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF619BMP 13125735 ENCODE Processing Pipeline 762e6d21111a70a5deedd4d842c30ee1 https://www.encodeproject.org/files/ENCFF901QFM/@@download/ENCFF901QFM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF881QFU bed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF352KWE 4953688 ENCODE Processing Pipeline df1d3222bcef013be580716b074e20e1 https://www.encodeproject.org/files/ENCFF881QFU/@@download/ENCFF881QFU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF259KAA bigBed narrowPeak optimal idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF551TDS 1273668 ENCODE Processing Pipeline b675be225fa7ad41594a91afa52ef269 https://www.encodeproject.org/files/ENCFF259KAA/@@download/ENCFF259KAA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF001NVD bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NVG 446121362 Michael Snyder, Stanford ef0f2855cabb4134046abc43155c67cb https://www.encodeproject.org/files/ENCFF001NVD/@@download/ENCFF001NVD.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001NVF bigBed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJR 516360 Michael Snyder, Stanford 5390cf67e8f30bbbbaf135b6a55f3410 https://www.encodeproject.org/files/ENCFF001NVF/@@download/ENCFF001NVF.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001NVG fastq reads ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 931761169 Michael Snyder, Stanford b0c29d913d0edb92ae228b7efeeaafb7 https://www.encodeproject.org/files/ENCFF001NVG/@@download/ENCFF001NVG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001NVI fastq reads ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1226745149 Michael Snyder, Stanford d75ce2802a781b3a30a1d7ec7515c88d https://www.encodeproject.org/files/ENCFF001NVI/@@download/ENCFF001NVI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001NVK bigWig signal ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVD, ENCFF001NVL 357521366 Michael Snyder, Stanford 72195666654cd14db871cc9916a9e5ad https://www.encodeproject.org/files/ENCFF001NVK/@@download/ENCFF001NVK.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001NVL bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NVI 538324827 Michael Snyder, Stanford 3726ace3bf98c2ad89f94474377eeac5 https://www.encodeproject.org/files/ENCFF001NVL/@@download/ENCFF001NVL.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001YJR bed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVD, ENCFF001NVL 237157 Michael Snyder, Stanford fbdd027866ab243773f528c116541fd5 https://www.encodeproject.org/files/ENCFF001YJR/@@download/ENCFF001YJR.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF360HMS bam unfiltered alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVI, ENCFF018NEO 1316865239 ENCODE Processing Pipeline db04732259a9bd96ae7f1dcb3bec910d https://www.encodeproject.org/files/ENCFF360HMS/@@download/ENCFF360HMS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF754YCA bam unfiltered alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVG, ENCFF018NEO 1033658445 ENCODE Processing Pipeline 8bb0b81a3d030adf101ac8ce4783154a https://www.encodeproject.org/files/ENCFF754YCA/@@download/ENCFF754YCA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF918MLI bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVI, ENCFF018NEO 774266929 ENCODE Processing Pipeline 663d15eaf247b3aa9c5f666dd0aa2ca3 https://www.encodeproject.org/files/ENCFF918MLI/@@download/ENCFF918MLI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF713QES bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVG, ENCFF018NEO 629207786 ENCODE Processing Pipeline abc63885441e89d6fba8d29a843d3a6f https://www.encodeproject.org/files/ENCFF713QES/@@download/ENCFF713QES.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF323OXU bigWig fold change over control ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF713QES 285245486 ENCODE Processing Pipeline 5d881e3401ddcc5153a6636ac1ee75f4 https://www.encodeproject.org/files/ENCFF323OXU/@@download/ENCFF323OXU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF527FDF bigBed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF512TDJ 10690710 ENCODE Processing Pipeline d34c024e80b1b40a47e5c2c403a1a4fa https://www.encodeproject.org/files/ENCFF527FDF/@@download/ENCFF527FDF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF031DDU bed narrowPeak optimal idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF506MCL, ENCFF512TDJ, ENCFF547MET, ENCFF579OLU 165979 ENCODE Processing Pipeline 3adb68a32b8636e7e784f238306daffd https://www.encodeproject.org/files/ENCFF031DDU/@@download/ENCFF031DDU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF811AKX bigBed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF579OLU 1729192 ENCODE Processing Pipeline c6069fae4abf8399b9764dcee79d5eb3 https://www.encodeproject.org/files/ENCFF811AKX/@@download/ENCFF811AKX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF128HOB bigBed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF506MCL 12985997 ENCODE Processing Pipeline 4e7d83bb8077f930b24c352b4d0daa11 https://www.encodeproject.org/files/ENCFF128HOB/@@download/ENCFF128HOB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF525IWQ bigWig signal p-value ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF918MLI 312106239 ENCODE Processing Pipeline 1983bc81ebb5dd625161ae051e4bbe0b https://www.encodeproject.org/files/ENCFF525IWQ/@@download/ENCFF525IWQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF506MCL bed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF713QES, ENCFF918MLI 5489004 ENCODE Processing Pipeline 326f9675c373f1e2999c8fabafaba5a9 https://www.encodeproject.org/files/ENCFF506MCL/@@download/ENCFF506MCL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF032YUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF031DDU 345148 ENCODE Processing Pipeline f51cc8e2857462eeb94bdea7598f243f https://www.encodeproject.org/files/ENCFF032YUJ/@@download/ENCFF032YUJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF685JDR bigWig signal p-value ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF713QES, ENCFF918MLI 310047718 ENCODE Processing Pipeline 2ae319c4ab3b1eb6a53bafcaac4b68d3 https://www.encodeproject.org/files/ENCFF685JDR/@@download/ENCFF685JDR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF516ABO bigWig fold change over control ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF713QES, ENCFF918MLI 528164654 ENCODE Processing Pipeline 6018bef48c349b1ce2cc705fb90de469 https://www.encodeproject.org/files/ENCFF516ABO/@@download/ENCFF516ABO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF512TDJ bed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF713QES 4850684 ENCODE Processing Pipeline 22aab2a7a2572e89f98c1d013eabd1df https://www.encodeproject.org/files/ENCFF512TDJ/@@download/ENCFF512TDJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF579OLU bed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF918MLI 863101 ENCODE Processing Pipeline 036396551a1579056098073ca712d75f https://www.encodeproject.org/files/ENCFF579OLU/@@download/ENCFF579OLU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF289AOM bed narrowPeak conservative idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF506MCL, ENCFF512TDJ, ENCFF547MET, ENCFF579OLU 105485 ENCODE Processing Pipeline 687902728becc9d7760e862a5edd6f39 https://www.encodeproject.org/files/ENCFF289AOM/@@download/ENCFF289AOM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF080RWB bigWig fold change over control ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF918MLI 338680060 ENCODE Processing Pipeline 4f084013beb5ea171c66f1592eeb858c https://www.encodeproject.org/files/ENCFF080RWB/@@download/ENCFF080RWB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF373QZP bigWig signal p-value ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF713QES 280058396 ENCODE Processing Pipeline e6ede33b0584c432f2b5d25baf6db348 https://www.encodeproject.org/files/ENCFF373QZP/@@download/ENCFF373QZP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF197NKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF289AOM 254223 ENCODE Processing Pipeline c52e7226f8a593cd0bd84826cffc4e8a https://www.encodeproject.org/files/ENCFF197NKJ/@@download/ENCFF197NKJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001NWO bigBed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJW 93717 Michael Snyder, Stanford 3b26c362cabca4a7f56e9b845e825d08 https://www.encodeproject.org/files/ENCFF001NWO/@@download/ENCFF001NWO.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NWP fastq reads ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 959806526 Michael Snyder, Stanford 535fa6b9be802725d921f58c1edbb009 https://www.encodeproject.org/files/ENCFF001NWP/@@download/ENCFF001NWP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NWR fastq reads ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 955206279 Michael Snyder, Stanford 1cf41c7f7a56a7ba9e4e4de85f9e321a https://www.encodeproject.org/files/ENCFF001NWR/@@download/ENCFF001NWR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NWT bigWig signal ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NWU, ENCFF001NWV 389989258 Michael Snyder, Stanford 2ce58491664333789c0ad9312c40c526 https://www.encodeproject.org/files/ENCFF001NWT/@@download/ENCFF001NWT.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NWU bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NWP 428677321 Michael Snyder, Stanford 79fdc0bcf1daa7a0155c7915e5a959ba https://www.encodeproject.org/files/ENCFF001NWU/@@download/ENCFF001NWU.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NWV bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NWR 456867234 Michael Snyder, Stanford cb06d885fe047c638b8acbbfe6127855 https://www.encodeproject.org/files/ENCFF001NWV/@@download/ENCFF001NWV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001YJW bed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NWU, ENCFF001NWV 19852 Michael Snyder, Stanford 197cb0b06fb0d8510fd3aba905d221c9 https://www.encodeproject.org/files/ENCFF001YJW/@@download/ENCFF001YJW.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF435JHB bam unfiltered alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NWR, ENCFF018NEO 1024510201 ENCODE Processing Pipeline 23dfded5ab222f02ce5df2a7bfcb015a https://www.encodeproject.org/files/ENCFF435JHB/@@download/ENCFF435JHB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF496QBC bam unfiltered alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NWP, ENCFF018NEO 1008593175 ENCODE Processing Pipeline e0a11ff66a2726387405e0beeee0840d https://www.encodeproject.org/files/ENCFF496QBC/@@download/ENCFF496QBC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF142TWS bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NWR, ENCFF018NEO 587664771 ENCODE Processing Pipeline b00357078102d3a0f9dec73bcc32a2f1 https://www.encodeproject.org/files/ENCFF142TWS/@@download/ENCFF142TWS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF538JPD bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NWP, ENCFF018NEO 521375721 ENCODE Processing Pipeline 8562f0075ca06766370a2ece9bf64388 https://www.encodeproject.org/files/ENCFF538JPD/@@download/ENCFF538JPD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF732PWT bigWig signal p-value ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF538JPD 254129409 ENCODE Processing Pipeline 378585d5d9c3cba33b5c2940bdfd512e https://www.encodeproject.org/files/ENCFF732PWT/@@download/ENCFF732PWT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF707YXY bigWig signal p-value ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF142TWS, ENCFF171OVT 253085377 ENCODE Processing Pipeline 1fbbab3a683d62be21d00f68a9e9f56a https://www.encodeproject.org/files/ENCFF707YXY/@@download/ENCFF707YXY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF104SUM bigWig fold change over control ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF142TWS, ENCFF171OVT, ENCFF538JPD 452598702 ENCODE Processing Pipeline de42716b4d0768a2692ceb8d8b7beb72 https://www.encodeproject.org/files/ENCFF104SUM/@@download/ENCFF104SUM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF216NAK bigWig fold change over control ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF142TWS, ENCFF171OVT 272351035 ENCODE Processing Pipeline d07ae7b26742da6b262d2937142d42de https://www.encodeproject.org/files/ENCFF216NAK/@@download/ENCFF216NAK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF101AMR bed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF142TWS, ENCFF171OVT, ENCFF538JPD 5199213 ENCODE Processing Pipeline 40785a7e00433c015ba1a5414eb98539 https://www.encodeproject.org/files/ENCFF101AMR/@@download/ENCFF101AMR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF312YJJ bigWig fold change over control ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF538JPD 244930465 ENCODE Processing Pipeline 5f8c55f733b829ce8c78eb465aff5438 https://www.encodeproject.org/files/ENCFF312YJJ/@@download/ENCFF312YJJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF178VLJ bigBed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF378SRR 10122055 ENCODE Processing Pipeline e2ae0bc24eef55062840971e2c7bf525 https://www.encodeproject.org/files/ENCFF178VLJ/@@download/ENCFF178VLJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF300NOO bigWig signal p-value ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF142TWS, ENCFF171OVT, ENCFF538JPD 345322475 ENCODE Processing Pipeline f934e3bd0e3597c4ab6cf45fced8fbbc https://www.encodeproject.org/files/ENCFF300NOO/@@download/ENCFF300NOO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF890BUV bed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF142TWS, ENCFF171OVT 4773158 ENCODE Processing Pipeline 597e9d5a6196b9054e9c076e1ef297ca https://www.encodeproject.org/files/ENCFF890BUV/@@download/ENCFF890BUV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF378SRR bed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF538JPD 4179005 ENCODE Processing Pipeline 8baba3e0aca4e79f92f15db32170ce05 https://www.encodeproject.org/files/ENCFF378SRR/@@download/ENCFF378SRR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF651NXT bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF016CZR 127065 ENCODE Processing Pipeline 0b97bf3ed35276913f6a095d01302d5c https://www.encodeproject.org/files/ENCFF651NXT/@@download/ENCFF651NXT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF716FDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF627TGO 172342 ENCODE Processing Pipeline b4c0f18114231f194d0291d9b4527192 https://www.encodeproject.org/files/ENCFF716FDQ/@@download/ENCFF716FDQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF803INS bigBed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF890BUV 10641930 ENCODE Processing Pipeline 19363ab72c54c0b0c8fc6e2dae4cfdb1 https://www.encodeproject.org/files/ENCFF803INS/@@download/ENCFF803INS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF016CZR bed narrowPeak conservative idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF101AMR, ENCFF378SRR, ENCFF547MET, ENCFF890BUV 46083 ENCODE Processing Pipeline ec7bb0b437025130354af26f8a480e76 https://www.encodeproject.org/files/ENCFF016CZR/@@download/ENCFF016CZR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF881FXP bigBed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF101AMR 10745253 ENCODE Processing Pipeline d2f91d6a3c2a5d8e7736cd0222cef292 https://www.encodeproject.org/files/ENCFF881FXP/@@download/ENCFF881FXP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF627TGO bed narrowPeak optimal idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF101AMR, ENCFF378SRR, ENCFF547MET, ENCFF890BUV 58993 ENCODE Processing Pipeline 1647fb66fc3e5d064d9fa0407b687ebf https://www.encodeproject.org/files/ENCFF627TGO/@@download/ENCFF627TGO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF287QGR bed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF737GDS, ENCFF836OSL 731883 Michael Snyder, Stanford bcc69cf1c54e5ee0f38eb823f4fb86ed https://www.encodeproject.org/files/ENCFF287QGR/@@download/ENCFF287QGR.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF929ZQW fastq reads ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 796430566 Michael Snyder, Stanford 677ef1046fabe4bef30235ce73d8c480 https://www.encodeproject.org/files/ENCFF929ZQW/@@download/ENCFF929ZQW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF190NEX fastq reads ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 777982600 Michael Snyder, Stanford 6ad306f5a7e001cd287712bdf6290d2e https://www.encodeproject.org/files/ENCFF190NEX/@@download/ENCFF190NEX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF836OSL bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF929ZQW 821391521 Michael Snyder, Stanford 8aa32fdc1d53af34e0099ebe182095c1 https://www.encodeproject.org/files/ENCFF836OSL/@@download/ENCFF836OSL.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF737GDS bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF190NEX 815942780 Michael Snyder, Stanford d7c0a1454fa02495d7f66ca7ba9bd244 https://www.encodeproject.org/files/ENCFF737GDS/@@download/ENCFF737GDS.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF148ECK bigBed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF287QGR 1489047 ENCODE Consortium 5ec43953e3d321be5d238394d5562a72 https://www.encodeproject.org/files/ENCFF148ECK/@@download/ENCFF148ECK.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF363AEZ bam unfiltered alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF929ZQW 1065576922 ENCODE Processing Pipeline 9964e4cfbb448bb77f9a18e8d3f7a960 https://www.encodeproject.org/files/ENCFF363AEZ/@@download/ENCFF363AEZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF517ZZX bam unfiltered alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF190NEX 1032491677 ENCODE Processing Pipeline 89928e49f439276b949851af752599a1 https://www.encodeproject.org/files/ENCFF517ZZX/@@download/ENCFF517ZZX.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF695ZHK bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF190NEX 699176703 ENCODE Processing Pipeline 42fea946b293c9f6bca976352a6e186e https://www.encodeproject.org/files/ENCFF695ZHK/@@download/ENCFF695ZHK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF195QUA bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF929ZQW 701248210 ENCODE Processing Pipeline e061e491fdbd1b822db7816d0992a937 https://www.encodeproject.org/files/ENCFF195QUA/@@download/ENCFF195QUA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF904QII bigWig signal p-value ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF195QUA, ENCFF339ZWC 239402999 ENCODE Processing Pipeline 796ec56cbdb6f1e2df52a635d3994a00 https://www.encodeproject.org/files/ENCFF904QII/@@download/ENCFF904QII.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF290EBM bigWig signal p-value ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF695ZHK 237917758 ENCODE Processing Pipeline 4dce75f326bd8c0f1b5b1904a2c38174 https://www.encodeproject.org/files/ENCFF290EBM/@@download/ENCFF290EBM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF395UQO bigWig signal p-value ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF195QUA, ENCFF339ZWC, ENCFF695ZHK 221032985 ENCODE Processing Pipeline 78c52d696158aec86705a0b7b07cc6df https://www.encodeproject.org/files/ENCFF395UQO/@@download/ENCFF395UQO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF305ZMC bigWig fold change over control ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF195QUA, ENCFF339ZWC 286878602 ENCODE Processing Pipeline 6dd4d0c64c0e73cbf39b4655dc4185bf https://www.encodeproject.org/files/ENCFF305ZMC/@@download/ENCFF305ZMC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF113RHY bigWig fold change over control ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF195QUA, ENCFF339ZWC, ENCFF695ZHK 479908868 ENCODE Processing Pipeline 27da7cc29c300f110d13a6a0c0a75674 https://www.encodeproject.org/files/ENCFF113RHY/@@download/ENCFF113RHY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF698XTO bigWig fold change over control ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF695ZHK 278147675 ENCODE Processing Pipeline fcad732bae0e60020392708ec39ab314 https://www.encodeproject.org/files/ENCFF698XTO/@@download/ENCFF698XTO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF291UJL bed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF195QUA, ENCFF339ZWC 4062221 ENCODE Processing Pipeline 8f77bfc3088005266284a7028c5a605e https://www.encodeproject.org/files/ENCFF291UJL/@@download/ENCFF291UJL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF841NPW bigBed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF291UJL 9441384 ENCODE Processing Pipeline 02b8bd743515c65128c45d149e86250c https://www.encodeproject.org/files/ENCFF841NPW/@@download/ENCFF841NPW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF856YRM bed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF195QUA, ENCFF339ZWC, ENCFF695ZHK 6120857 ENCODE Processing Pipeline 5b971644f1825b7c49f52c7a65a7ff71 https://www.encodeproject.org/files/ENCFF856YRM/@@download/ENCFF856YRM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF946OOG bed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF695ZHK 5456791 ENCODE Processing Pipeline e328c6ee77fb5dc4607c62a546760427 https://www.encodeproject.org/files/ENCFF946OOG/@@download/ENCFF946OOG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF469JYB bigBed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF946OOG 12614908 ENCODE Processing Pipeline 6a337767854b2bacd5cb641e3a5aff12 https://www.encodeproject.org/files/ENCFF469JYB/@@download/ENCFF469JYB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF756IPH bed narrowPeak conservative idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF291UJL, ENCFF547MET, ENCFF856YRM, ENCFF946OOG 648289 ENCODE Processing Pipeline 4c0690c307da97b82ace4829d6f4240c https://www.encodeproject.org/files/ENCFF756IPH/@@download/ENCFF756IPH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF067HTB bigBed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF856YRM 13004600 ENCODE Processing Pipeline 295621903a89935915a4e30698bd049a https://www.encodeproject.org/files/ENCFF067HTB/@@download/ENCFF067HTB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF610VQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF756IPH 1192130 ENCODE Processing Pipeline 86792ba6a96f4f31f196f06926681da5 https://www.encodeproject.org/files/ENCFF610VQZ/@@download/ENCFF610VQZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF554BKP bed narrowPeak optimal idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF291UJL, ENCFF547MET, ENCFF856YRM, ENCFF946OOG 791132 ENCODE Processing Pipeline 895d8851b97a3a9fe6b8eb4cdf45e543 https://www.encodeproject.org/files/ENCFF554BKP/@@download/ENCFF554BKP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF824UBX bigBed narrowPeak optimal idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF554BKP 1397533 ENCODE Processing Pipeline 899099bf2a133ed77ce663530865db08 https://www.encodeproject.org/files/ENCFF824UBX/@@download/ENCFF824UBX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF464DYI fastq reads ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 924778484 Richard Myers, HAIB 11c2a22b1dbdc7db05f4c2c7b993ffb4 SRA:SRR5111671 https://www.encodeproject.org/files/ENCFF464DYI/@@download/ENCFF464DYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF637HTW/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF310VOQ fastq reads ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 934347819 Richard Myers, HAIB 7f34d08dad0c3949dbb84ab77a7c94e8 SRA:SRR5111672 https://www.encodeproject.org/files/ENCFF310VOQ/@@download/ENCFF310VOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF637HTW/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF231XEH bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF310VOQ, ENCFF806TVZ 747118869 ENCODE Processing Pipeline 628105979ab056eb37deb82343fc7842 https://www.encodeproject.org/files/ENCFF231XEH/@@download/ENCFF231XEH.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF009SLP bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF464DYI, ENCFF806TVZ 776631933 ENCODE Processing Pipeline 996f40fdae42e330378968244606353e https://www.encodeproject.org/files/ENCFF009SLP/@@download/ENCFF009SLP.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF121FBT bam unfiltered alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 1010363083 ENCODE Processing Pipeline 218ea7ba6c9da442a0591cb36afd65f8 https://www.encodeproject.org/files/ENCFF121FBT/@@download/ENCFF121FBT.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF223FXW bam unfiltered alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 972622758 ENCODE Processing Pipeline 3a051a1881f98f672ca6854f78e9bf35 https://www.encodeproject.org/files/ENCFF223FXW/@@download/ENCFF223FXW.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF390ZQV bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 747012839 ENCODE Processing Pipeline 281880213c6a21380a29653b3ddb1c64 https://www.encodeproject.org/files/ENCFF390ZQV/@@download/ENCFF390ZQV.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF371TUB bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 776530302 ENCODE Processing Pipeline e448db6f7692c2f59352bfe6b409de7d https://www.encodeproject.org/files/ENCFF371TUB/@@download/ENCFF371TUB.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF246CLY bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 435464375 ENCODE Processing Pipeline 09f2cca20ede02726a5447a94de5f73b https://www.encodeproject.org/files/ENCFF246CLY/@@download/ENCFF246CLY.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF004PFD bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 302506590 ENCODE Processing Pipeline e96538a3aba7c55b8159eca4aff98a13 https://www.encodeproject.org/files/ENCFF004PFD/@@download/ENCFF004PFD.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF909WHG bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 373929495 ENCODE Processing Pipeline c37d54b77efe691f9281599e8bef69af https://www.encodeproject.org/files/ENCFF909WHG/@@download/ENCFF909WHG.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF800FPD bed narrowPeak conservative idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF107KOO, ENCFF139WDG, ENCFF157SGS, ENCFF547MET 681407 ENCODE Processing Pipeline fe83782b854704968300729e7ce4975b https://www.encodeproject.org/files/ENCFF800FPD/@@download/ENCFF800FPD.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF688LXO bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 289794129 ENCODE Processing Pipeline 36fd7b913a1f6975f3ea9c62d6e6b3ad https://www.encodeproject.org/files/ENCFF688LXO/@@download/ENCFF688LXO.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF863XWX bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 334967890 ENCODE Processing Pipeline 723d1b450fa277a17a6aee05a44e4193 https://www.encodeproject.org/files/ENCFF863XWX/@@download/ENCFF863XWX.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF278NWO bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 566460049 ENCODE Processing Pipeline ec0bdc7302f696cda20e0cc943b2e0b6 https://www.encodeproject.org/files/ENCFF278NWO/@@download/ENCFF278NWO.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF139WDG bed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 4861337 ENCODE Processing Pipeline fdf7deb32c29f1937f2c63c4f9e3f610 https://www.encodeproject.org/files/ENCFF139WDG/@@download/ENCFF139WDG.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF077HAE bigBed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF107KOO 10488661 ENCODE Processing Pipeline 446eae02586de6df31ec9324406f7780 https://www.encodeproject.org/files/ENCFF077HAE/@@download/ENCFF077HAE.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF990RYP bigBed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF157SGS 10492235 ENCODE Processing Pipeline 1f8700ed7ef8b54b5d6e8fb123c77b44 https://www.encodeproject.org/files/ENCFF990RYP/@@download/ENCFF990RYP.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF107KOO bed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 4284889 ENCODE Processing Pipeline 9b64f8f77e282e0519322ff63dd53280 https://www.encodeproject.org/files/ENCFF107KOO/@@download/ENCFF107KOO.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF157SGS bed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 4281727 ENCODE Processing Pipeline 5ea938a65587b3c5fa9bc3fce9d09a0c https://www.encodeproject.org/files/ENCFF157SGS/@@download/ENCFF157SGS.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF711THP bigBed narrowPeak conservative idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF800FPD 1185425 ENCODE Processing Pipeline ae53f66b3120ed38e1a304c0f26f56b6 https://www.encodeproject.org/files/ENCFF711THP/@@download/ENCFF711THP.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF409RRE bed narrowPeak optimal idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF107KOO, ENCFF139WDG, ENCFF157SGS, ENCFF547MET 703430 ENCODE Processing Pipeline 44f9968428b833e87a382501c377e2d1 https://www.encodeproject.org/files/ENCFF409RRE/@@download/ENCFF409RRE.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF130OOT bigBed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF139WDG 11211134 ENCODE Processing Pipeline 7d80496b4413ac8aa63b5b007bcff311 https://www.encodeproject.org/files/ENCFF130OOT/@@download/ENCFF130OOT.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF568MTS bigBed narrowPeak optimal idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF409RRE 1215311 ENCODE Processing Pipeline cb9f0a3d36a4c88e8a847edfb7484169 https://www.encodeproject.org/files/ENCFF568MTS/@@download/ENCFF568MTS.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001LGM bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LGV 1023167542 Bing Ren, UCSD d51ce14d9677cc677dc6f3404fb1bb86 https://www.encodeproject.org/files/ENCFF001LGM/@@download/ENCFF001LGM.bam mm9 archived low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LGN bigBed broadPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE ENCFF001XZW 406381 Bing Ren, UCSD 6b0a739ead4ca6e53b8e217e9ec944d7 https://www.encodeproject.org/files/ENCFF001LGN/@@download/ENCFF001LGN.bigBed mm9 archived low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LGO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LGW 1266030345 Bing Ren, UCSD d8d8d2c9a00c50eebf557a49290d4067 https://www.encodeproject.org/files/ENCFF001LGO/@@download/ENCFF001LGO.bam mm9 archived low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LGP bigWig signal ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 54643169 Bing Ren, UCSD aa10b7d2c1b4723d28edcd5b9dc02230 https://www.encodeproject.org/files/ENCFF001LGP/@@download/ENCFF001LGP.bigWig mm9 archived low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from ENCFF001LGV fastq reads ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 1013826871 Bing Ren, UCSD bcd517a44116067870cd1a8db2fb3970 https://www.encodeproject.org/files/ENCFF001LGV/@@download/ENCFF001LGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent control read length, moderate library complexity ENCFF001LGW fastq reads ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1252220304 Bing Ren, UCSD 12469c44c8aef2fbd876da70ba51a920 https://www.encodeproject.org/files/ENCFF001LGW/@@download/ENCFF001LGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XZW bed broadPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 296521 Bing Ren, UCSD a6701521e61b87e519e1d8cb2879d890 https://www.encodeproject.org/files/ENCFF001XZW/@@download/ENCFF001XZW.bed.gz mm9 archived low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from ENCFF781WHH bam unfiltered alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 1104255517 ENCODE Processing Pipeline f1a82886c2ddf3b8f96041b8cb4d4269 https://www.encodeproject.org/files/ENCFF781WHH/@@download/ENCFF781WHH.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF904VPD bam unfiltered alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 1365078868 ENCODE Processing Pipeline 2f436354e9a6cd4b0fcbd08b71c6c24e https://www.encodeproject.org/files/ENCFF904VPD/@@download/ENCFF904VPD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF337AUO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 608960718 ENCODE Processing Pipeline 572c3324b3d5a68fdd22a2ac432539a2 https://www.encodeproject.org/files/ENCFF337AUO/@@download/ENCFF337AUO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF321PYA bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 780037647 ENCODE Processing Pipeline b21167a2bd0b966d80efefefbdcc0435 https://www.encodeproject.org/files/ENCFF321PYA/@@download/ENCFF321PYA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF239VRO bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 315567943 ENCODE Processing Pipeline e898383318ef5cca5848ab7ccef490cc https://www.encodeproject.org/files/ENCFF239VRO/@@download/ENCFF239VRO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF415USY bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 410805300 ENCODE Processing Pipeline 8f48995ac4cdc55c76ea8354267d5c38 https://www.encodeproject.org/files/ENCFF415USY/@@download/ENCFF415USY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF991NSC bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 370449873 ENCODE Processing Pipeline 3c1495a66767e0003793efb4ba3034dc https://www.encodeproject.org/files/ENCFF991NSC/@@download/ENCFF991NSC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF826OQW bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 533510023 ENCODE Processing Pipeline 3f4060d45255de89e3d2d66ad6786766 https://www.encodeproject.org/files/ENCFF826OQW/@@download/ENCFF826OQW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF891XCC bigBed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF738VPY 12884930 ENCODE Processing Pipeline 2b9228e7c2229628781d870d2d88778c https://www.encodeproject.org/files/ENCFF891XCC/@@download/ENCFF891XCC.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF671ONB bigBed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF755GYG 12953935 ENCODE Processing Pipeline a2890513b371a543d16c591fa2548bac https://www.encodeproject.org/files/ENCFF671ONB/@@download/ENCFF671ONB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF978OGN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF524HSW 573443 ENCODE Processing Pipeline 18bcc4ae81445632510812656fb02c5d https://www.encodeproject.org/files/ENCFF978OGN/@@download/ENCFF978OGN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF360AUF bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 303408409 ENCODE Processing Pipeline 51d083b1faa7de8a397e63c4f86899ba https://www.encodeproject.org/files/ENCFF360AUF/@@download/ENCFF360AUF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF738VPY bed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 5460339 ENCODE Processing Pipeline 618427c867fe7ba134b2523dbf0bb70d https://www.encodeproject.org/files/ENCFF738VPY/@@download/ENCFF738VPY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF330SNH bed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 5914290 ENCODE Processing Pipeline 5f3179662d4458b2f588dff5642afaf6 https://www.encodeproject.org/files/ENCFF330SNH/@@download/ENCFF330SNH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF755GYG bed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 6641531 ENCODE Processing Pipeline 6501dc71e28009867c5ed0feeb8b4145 https://www.encodeproject.org/files/ENCFF755GYG/@@download/ENCFF755GYG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF524HSW bed narrowPeak conservative idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF330SNH, ENCFF547MET, ENCFF738VPY, ENCFF755GYG 323808 ENCODE Processing Pipeline 1e9481f2b2d05054d9afdc5fc5ff9d8f https://www.encodeproject.org/files/ENCFF524HSW/@@download/ENCFF524HSW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF253NHY bed narrowPeak optimal idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF330SNH, ENCFF547MET, ENCFF738VPY, ENCFF755GYG 343598 ENCODE Processing Pipeline d60a0cbb723d353c09886c8e13308594 https://www.encodeproject.org/files/ENCFF253NHY/@@download/ENCFF253NHY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF836NHA bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 517418211 ENCODE Processing Pipeline 712085e87bdb23727e48c9d4101256f3 https://www.encodeproject.org/files/ENCFF836NHA/@@download/ENCFF836NHA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF078SFE bigBed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF330SNH 12925356 ENCODE Processing Pipeline 96773668eefffb1c4483bc6fca3e692c https://www.encodeproject.org/files/ENCFF078SFE/@@download/ENCFF078SFE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF080WDI bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF253NHY 599106 ENCODE Processing Pipeline 748a6c5ca01003ee1f96dad5b622f247 https://www.encodeproject.org/files/ENCFF080WDI/@@download/ENCFF080WDI.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LKM bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKY 349941465 Bing Ren, UCSD c1927aa703895c6619ca26a730eaffca https://www.encodeproject.org/files/ENCFF001LKM/@@download/ENCFF001LKM.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKN bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLE 645891722 Bing Ren, UCSD 00a2ee9167921689ea9d56f9bf8b1bb6 https://www.encodeproject.org/files/ENCFF001LKN/@@download/ENCFF001LKN.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKO bigBed broadPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAI 918749 Bing Ren, UCSD 964c3c8f0d1b3c888a6b9c4033ebac73 https://www.encodeproject.org/files/ENCFF001LKO/@@download/ENCFF001LKO.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKR bigWig signal ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKM, ENCFF001LKN 46909819 Bing Ren, UCSD dbbe30ad122a818b301eebd7edc1f452 https://www.encodeproject.org/files/ENCFF001LKR/@@download/ENCFF001LKR.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKY fastq reads ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 33 single-ended 681016013 Bing Ren, UCSD 2780f6fda36487aa0346e577ded037c3 https://www.encodeproject.org/files/ENCFF001LKY/@@download/ENCFF001LKY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKE/ released mild to moderate bottlenecking, mixed read lengths, inconsistent control read length, low read length, low read depth, moderate library complexity insufficient read depth, insufficient read length ENCFF001LLE fastq reads ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 787401900 Bing Ren, UCSD 31830bc0a816bba4b559f047f8207dfc https://www.encodeproject.org/files/ENCFF001LLE/@@download/ENCFF001LLE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF001YAI bed broadPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKM, ENCFF001LKN 589029 Bing Ren, UCSD e90ca04036424133c8ade4741a5e9b54 https://www.encodeproject.org/files/ENCFF001YAI/@@download/ENCFF001YAI.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF488MEI bam unfiltered alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 822804368 ENCODE Processing Pipeline b9dadc392ddbc5a70bdda7ecfe1a6b69 https://www.encodeproject.org/files/ENCFF488MEI/@@download/ENCFF488MEI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF897RYO bam unfiltered alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 742297582 ENCODE Processing Pipeline b290b04c7471fa0af9dae88058dcf75d https://www.encodeproject.org/files/ENCFF897RYO/@@download/ENCFF897RYO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF265AMZ bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 332320622 ENCODE Processing Pipeline 573fbb302715f284b0e2d4c90d6dbf0f https://www.encodeproject.org/files/ENCFF265AMZ/@@download/ENCFF265AMZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF147QPL bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 463563626 ENCODE Processing Pipeline 046232a0d2bb8b0ec357f41292d6ed1b https://www.encodeproject.org/files/ENCFF147QPL/@@download/ENCFF147QPL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF237XJD bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 305387202 ENCODE Processing Pipeline f14a3cff2b0f579a1337b328a1f6c458 https://www.encodeproject.org/files/ENCFF237XJD/@@download/ENCFF237XJD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF571CYW bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 309059831 ENCODE Processing Pipeline 0ee7e8101253f3d4cf7946535d03c100 https://www.encodeproject.org/files/ENCFF571CYW/@@download/ENCFF571CYW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF594EHQ bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 357709128 ENCODE Processing Pipeline 4a0fe10a4a2daa9631df2cbfa37f2e1d https://www.encodeproject.org/files/ENCFF594EHQ/@@download/ENCFF594EHQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF821ICZ bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 158633568 ENCODE Processing Pipeline 8267f2556b744cda1e176762ebc17cf2 https://www.encodeproject.org/files/ENCFF821ICZ/@@download/ENCFF821ICZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF420ODU bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 199127750 ENCODE Processing Pipeline ffce56162a7df89beb3b717fe72e2895 https://www.encodeproject.org/files/ENCFF420ODU/@@download/ENCFF420ODU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF147CTE bigBed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF258WBW 10962749 ENCODE Processing Pipeline 691a5662409e1f8360f5505128c7a580 https://www.encodeproject.org/files/ENCFF147CTE/@@download/ENCFF147CTE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF601AJL bed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 2412924 ENCODE Processing Pipeline fc9ffa51e188fb3b29a5c04ebe810bc8 https://www.encodeproject.org/files/ENCFF601AJL/@@download/ENCFF601AJL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF164ZFD bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 299092611 ENCODE Processing Pipeline d478cedd0ff94a0b1de2e5626bc3368b https://www.encodeproject.org/files/ENCFF164ZFD/@@download/ENCFF164ZFD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF523FYC bed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 3684197 ENCODE Processing Pipeline 0e2bd34bc23be09a7e83cfe9036dac48 https://www.encodeproject.org/files/ENCFF523FYC/@@download/ENCFF523FYC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF311HPG bed narrowPeak optimal idr thresholded peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF258WBW, ENCFF523FYC, ENCFF547MET, ENCFF601AJL 606640 ENCODE Processing Pipeline e69e7c9495ae7b1486a52239b52c3afb https://www.encodeproject.org/files/ENCFF311HPG/@@download/ENCFF311HPG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF946DCA bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF311HPG 1124752 ENCODE Processing Pipeline b4175532568a28000c4a555e4b03e3dc https://www.encodeproject.org/files/ENCFF946DCA/@@download/ENCFF946DCA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF258WBW bed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 4998506 ENCODE Processing Pipeline 3c86a12c855637771baf4d56d3515b22 https://www.encodeproject.org/files/ENCFF258WBW/@@download/ENCFF258WBW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF081LJA bigBed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF601AJL 5771973 ENCODE Processing Pipeline cb0cef1ccfe42403896b72210ffaeb91 https://www.encodeproject.org/files/ENCFF081LJA/@@download/ENCFF081LJA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF106JNO bigBed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF523FYC 8397724 ENCODE Processing Pipeline fac62a83c59b48d1dc93eaeaa7fcfcfe https://www.encodeproject.org/files/ENCFF106JNO/@@download/ENCFF106JNO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, moderate library complexity insufficient read depth, insufficient read length ENCFF001MRE bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MRN 703317298 Ross Hardison, PennState 7c3767a82699dc32136171179c48805a https://www.encodeproject.org/files/ENCFF001MRE/@@download/ENCFF001MRE.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MRF bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MRQ 579888089 Ross Hardison, PennState b8648516ae1667a01c8ab1d4886816fd https://www.encodeproject.org/files/ENCFF001MRF/@@download/ENCFF001MRF.bam mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MRG bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFP 1027733 Ross Hardison, PennState 43e9beafcf19bbc8998afbf914f73588 https://www.encodeproject.org/files/ENCFF001MRG/@@download/ENCFF001MRG.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MRJ bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFQ 696699 Ross Hardison, PennState 50c018b4c1394f44a3a16b12b0f5ebf3 https://www.encodeproject.org/files/ENCFF001MRJ/@@download/ENCFF001MRJ.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MRK bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFR 1024374 Ross Hardison, PennState 6330780e9323b10947190609c879bf5b https://www.encodeproject.org/files/ENCFF001MRK/@@download/ENCFF001MRK.bigBed mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MRL bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2182561507 Ross Hardison, PennState 5dfe95b0176ad68802482fb4973e2294 https://www.encodeproject.org/files/ENCFF001MRL/@@download/ENCFF001MRL.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MRM bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1971273654 Ross Hardison, PennState 54326e55de39c443436dc469f2db85fb https://www.encodeproject.org/files/ENCFF001MRM/@@download/ENCFF001MRM.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MRN fastq reads ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 551834958 Ross Hardison, PennState 270a7ff3d4c265fbf436b644ebd66b3b https://www.encodeproject.org/files/ENCFF001MRN/@@download/ENCFF001MRN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MRO bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 3361135014 Ross Hardison, PennState d288601f84500ad7faf78c87828f92c8 https://www.encodeproject.org/files/ENCFF001MRO/@@download/ENCFF001MRO.bigWig mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MRQ fastq reads ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 453798372 Ross Hardison, PennState 4c8898b087a582a4a43399e43b4e1c3f https://www.encodeproject.org/files/ENCFF001MRQ/@@download/ENCFF001MRQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, low read depth, mixed read lengths, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001YFP bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 528780 Ross Hardison, PennState eceb7b84d7a1435cdd675ca27969dd4e https://www.encodeproject.org/files/ENCFF001YFP/@@download/ENCFF001YFP.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFQ bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 438465 Ross Hardison, PennState c7037bca8f00efff65b4b64a4d5cd0e1 https://www.encodeproject.org/files/ENCFF001YFQ/@@download/ENCFF001YFQ.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFR bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 503668 Ross Hardison, PennState b7fce43e7cafd07c2003a7df9097bf12 https://www.encodeproject.org/files/ENCFF001YFR/@@download/ENCFF001YFR.bed.gz mm9 archived low read length, low read depth, mixed read lengths, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF920RHB bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 382537031 ENCODE Processing Pipeline 6fb949942f1610e0fabcdd606b43b7d9 https://www.encodeproject.org/files/ENCFF920RHB/@@download/ENCFF920RHB.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF903WXR bam unfiltered alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 741103513 ENCODE Processing Pipeline 8e703dc273268fe15adbc30303abb352 https://www.encodeproject.org/files/ENCFF903WXR/@@download/ENCFF903WXR.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF440GRL bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 531488649 ENCODE Processing Pipeline 85c27eb8bb732b45034cc2635b40c9e6 https://www.encodeproject.org/files/ENCFF440GRL/@@download/ENCFF440GRL.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF422FFH bam unfiltered alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 560260032 ENCODE Processing Pipeline b75766941fa3faae638d138eda3d084c https://www.encodeproject.org/files/ENCFF422FFH/@@download/ENCFF422FFH.bam mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF505YBK bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 797875156 ENCODE Processing Pipeline f855ac0f8a444d35bb90b62537cf1eca https://www.encodeproject.org/files/ENCFF505YBK/@@download/ENCFF505YBK.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF452USO bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 800855498 ENCODE Processing Pipeline f4c070c1a3d0cf8fa43b9e0b9082a80a https://www.encodeproject.org/files/ENCFF452USO/@@download/ENCFF452USO.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF057EEV bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 935330337 ENCODE Processing Pipeline fcce04023c4a853953e37e96562fe179 https://www.encodeproject.org/files/ENCFF057EEV/@@download/ENCFF057EEV.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF288VZZ bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 460756741 ENCODE Processing Pipeline 520d3a1403102210b999ed9ca1e77fe7 https://www.encodeproject.org/files/ENCFF288VZZ/@@download/ENCFF288VZZ.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF547IZY bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 507042614 ENCODE Processing Pipeline f5d99a0ec18cfc15fe1364437c634e43 https://www.encodeproject.org/files/ENCFF547IZY/@@download/ENCFF547IZY.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF816XFR bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 799047029 ENCODE Processing Pipeline 4d2a43968e8d44f3bb77f4b9af7cdc12 https://www.encodeproject.org/files/ENCFF816XFR/@@download/ENCFF816XFR.bigWig mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF456FUK bed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 4210378 ENCODE Processing Pipeline eced858a9974eaf3342122c853996553 https://www.encodeproject.org/files/ENCFF456FUK/@@download/ENCFF456FUK.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF163MHO bed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 6021055 ENCODE Processing Pipeline c20f8935cd81a478eb9604735b6898c6 https://www.encodeproject.org/files/ENCFF163MHO/@@download/ENCFF163MHO.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF491MYA bigBed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF638XCM 10627635 ENCODE Processing Pipeline db4e57bdd7257869c890df89894fbae9 https://www.encodeproject.org/files/ENCFF491MYA/@@download/ENCFF491MYA.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF392XQY bigBed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF163MHO 11340398 ENCODE Processing Pipeline 7337573571ec421ab9d54d4750fad834 https://www.encodeproject.org/files/ENCFF392XQY/@@download/ENCFF392XQY.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF638XCM bed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 5229595 ENCODE Processing Pipeline 7dcfe2bb1e2d1172d38273bdbf07b11d https://www.encodeproject.org/files/ENCFF638XCM/@@download/ENCFF638XCM.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF929RJU bed narrowPeak optimal idr thresholded peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF163MHO, ENCFF456FUK, ENCFF547MET, ENCFF638XCM 461703 ENCODE Processing Pipeline d668027fd0716f46246446025db4c677 https://www.encodeproject.org/files/ENCFF929RJU/@@download/ENCFF929RJU.bed.gz mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF980API bigBed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF456FUK 8923739 ENCODE Processing Pipeline d58074427735ba9048d4a355a27b04f1 https://www.encodeproject.org/files/ENCFF980API/@@download/ENCFF980API.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF003MBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF929RJU 837163 ENCODE Processing Pipeline a3a8e2770ed14c2b2d16be7fbe94882b https://www.encodeproject.org/files/ENCFF003MBJ/@@download/ENCFF003MBJ.bigBed mm10 released low read length, low read depth, mixed read lengths, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001LNZ bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOK 565056127 Bing Ren, UCSD 11590909d37bc04e7d10f3ac35a07545 https://www.encodeproject.org/files/ENCFF001LNZ/@@download/ENCFF001LNZ.bam mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LOA bigBed broadPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAQ 909952 Bing Ren, UCSD fc925ec66dbbfef804d8fde8053bd395 https://www.encodeproject.org/files/ENCFF001LOA/@@download/ENCFF001LOA.bigBed mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LOB bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOI 561608618 Bing Ren, UCSD b9e5c8f63ea7b618e632b60984a2be3d https://www.encodeproject.org/files/ENCFF001LOB/@@download/ENCFF001LOB.bam mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LOD bigWig signal ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNZ, ENCFF001LOB 59512875 Bing Ren, UCSD d5d814db5fdea317e9ff40f270ba122b https://www.encodeproject.org/files/ENCFF001LOD/@@download/ENCFF001LOD.bigWig mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LOI fastq reads ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 649652575 Bing Ren, UCSD cb88968f80b51bba208252174b3b589e https://www.encodeproject.org/files/ENCFF001LOI/@@download/ENCFF001LOI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPS/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001LOK fastq reads ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 905969306 Bing Ren, UCSD 34e72055a6a1a355cad06ab2d83480b7 https://www.encodeproject.org/files/ENCFF001LOK/@@download/ENCFF001LOK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPR/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001YAQ bed broadPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNZ, ENCFF001LOB 551538 Bing Ren, UCSD 4dac8569e3d3ebb4e19f36ab633d10dc https://www.encodeproject.org/files/ENCFF001YAQ/@@download/ENCFF001YAQ.bed.gz mm9 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF142CEK bam unfiltered alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 707035481 ENCODE Processing Pipeline 0783a344e320c60d367ad5ceed01dedc https://www.encodeproject.org/files/ENCFF142CEK/@@download/ENCFF142CEK.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF564ZUE bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 250447605 ENCODE Processing Pipeline d36a0e2f8a43c21b3fd3ff706d871243 https://www.encodeproject.org/files/ENCFF564ZUE/@@download/ENCFF564ZUE.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF766YMS bam unfiltered alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 928976207 ENCODE Processing Pipeline fe8c2545a5c3848464a6745f6ca644ea https://www.encodeproject.org/files/ENCFF766YMS/@@download/ENCFF766YMS.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF464NFI bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 267730430 ENCODE Processing Pipeline c0854275972f38d9223651eb1abe5fa7 https://www.encodeproject.org/files/ENCFF464NFI/@@download/ENCFF464NFI.bam mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF894SWO bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 278513438 ENCODE Processing Pipeline feb45c62e63aa32260eeeeb2f0137dca https://www.encodeproject.org/files/ENCFF894SWO/@@download/ENCFF894SWO.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF700VXC bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 284687072 ENCODE Processing Pipeline 8928c9db676472006c23e2fa966223ca https://www.encodeproject.org/files/ENCFF700VXC/@@download/ENCFF700VXC.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF843IPI bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 480252840 ENCODE Processing Pipeline 3792f8964fb5677fc69eb2f28ca3c373 https://www.encodeproject.org/files/ENCFF843IPI/@@download/ENCFF843IPI.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF728YFM bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 107190297 ENCODE Processing Pipeline 79f0aaf0225d124397ebcb4a2753efbc https://www.encodeproject.org/files/ENCFF728YFM/@@download/ENCFF728YFM.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF929APL bed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 1781061 ENCODE Processing Pipeline 1732037d3ed7ba99200276248d57486a https://www.encodeproject.org/files/ENCFF929APL/@@download/ENCFF929APL.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF507FHH bed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 4624462 ENCODE Processing Pipeline c284a35dbfc8f1a27f6aebf609441a9e https://www.encodeproject.org/files/ENCFF507FHH/@@download/ENCFF507FHH.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF959ZMQ bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 118504034 ENCODE Processing Pipeline 610618a010540066f8d1ccdd5ce553da https://www.encodeproject.org/files/ENCFF959ZMQ/@@download/ENCFF959ZMQ.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF508GAH bed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 2628091 ENCODE Processing Pipeline 588dcae8b8a099763bc52c5f7fde1d56 https://www.encodeproject.org/files/ENCFF508GAH/@@download/ENCFF508GAH.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF432JCZ bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 269976331 ENCODE Processing Pipeline eaa3153f733ccaf34e23b8f96f0841ef https://www.encodeproject.org/files/ENCFF432JCZ/@@download/ENCFF432JCZ.bigWig mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF819GAZ bigBed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF929APL 3870246 ENCODE Processing Pipeline 6c42293308705144b0100ee599cff8aa https://www.encodeproject.org/files/ENCFF819GAZ/@@download/ENCFF819GAZ.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF989CFR bigBed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH 11201788 ENCODE Processing Pipeline e330bc04da602025caf2736646013971 https://www.encodeproject.org/files/ENCFF989CFR/@@download/ENCFF989CFR.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF551CDR bigBed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF508GAH 5773014 ENCODE Processing Pipeline fcac4664542d2c59865fe372d15207f1 https://www.encodeproject.org/files/ENCFF551CDR/@@download/ENCFF551CDR.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF549BWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF940SWY 472750 ENCODE Processing Pipeline a895b765542d5740e8d728714620ccf4 https://www.encodeproject.org/files/ENCFF549BWV/@@download/ENCFF549BWV.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF100YLI bed narrowPeak optimal idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH, ENCFF508GAH, ENCFF547MET, ENCFF929APL 345379 ENCODE Processing Pipeline 20bcde137a04241c61036572d6657bf7 https://www.encodeproject.org/files/ENCFF100YLI/@@download/ENCFF100YLI.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF551CRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF100YLI 580367 ENCODE Processing Pipeline f7face1856a342cabe651dd90b2c0e87 https://www.encodeproject.org/files/ENCFF551CRD/@@download/ENCFF551CRD.bigBed mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF940SWY bed narrowPeak conservative idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH, ENCFF508GAH, ENCFF547MET, ENCFF929APL 263244 ENCODE Processing Pipeline 42888e9ad50c71031e414167a80f9724 https://www.encodeproject.org/files/ENCFF940SWY/@@download/ENCFF940SWY.bed.gz mm10 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001NRR bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NRT 464642969 Michael Snyder, Stanford 6ccc7e6106f11b29bcb7c1f393af63f5 https://www.encodeproject.org/files/ENCFF001NRR/@@download/ENCFF001NRR.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NRS bigBed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJK 824729 Michael Snyder, Stanford e2d8e55c135738157eeea1af2c0cabe6 https://www.encodeproject.org/files/ENCFF001NRS/@@download/ENCFF001NRS.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NRT fastq reads ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1140546705 Michael Snyder, Stanford 85ad30a02746948a0411a69228db9823 https://www.encodeproject.org/files/ENCFF001NRT/@@download/ENCFF001NRT.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NRV bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NRW 389225184 Michael Snyder, Stanford 76786356b9fc1846478ddba38c6b4bb6 https://www.encodeproject.org/files/ENCFF001NRV/@@download/ENCFF001NRV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NRW fastq reads ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 807877562 Michael Snyder, Stanford 1c41df0cebeb2296bccf6e5c6570207d https://www.encodeproject.org/files/ENCFF001NRW/@@download/ENCFF001NRW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NRY bigWig signal ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRR, ENCFF001NRV 204427535 Michael Snyder, Stanford 532b987a3012e39597b84360c2de4bf7 https://www.encodeproject.org/files/ENCFF001NRY/@@download/ENCFF001NRY.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001YJK bed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRR, ENCFF001NRV 323794 Michael Snyder, Stanford fd99789777a4f4a5ff8cff48b95c2d39 https://www.encodeproject.org/files/ENCFF001YJK/@@download/ENCFF001YJK.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF596VCN bam unfiltered alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NRW, ENCFF018NEO 855968200 ENCODE Processing Pipeline fea111b8b743146f673964de826e1593 https://www.encodeproject.org/files/ENCFF596VCN/@@download/ENCFF596VCN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF840FLV bam unfiltered alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NRT, ENCFF018NEO 1188295263 ENCODE Processing Pipeline 6be7a7f75ffb442a04eee53655bdd00c https://www.encodeproject.org/files/ENCFF840FLV/@@download/ENCFF840FLV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF239NFK bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NRW, ENCFF018NEO 555939549 ENCODE Processing Pipeline 8af9e7bb063d487bba993ebf75ee0fd4 https://www.encodeproject.org/files/ENCFF239NFK/@@download/ENCFF239NFK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF127ZPW bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NRT, ENCFF018NEO 626469364 ENCODE Processing Pipeline 457d60da20e2e91ad91639f1dc0a146b https://www.encodeproject.org/files/ENCFF127ZPW/@@download/ENCFF127ZPW.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF281XVX bed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127ZPW, ENCFF171OVT, ENCFF239NFK 5876129 ENCODE Processing Pipeline 23df01810ee04e8619139b985a0f29fa https://www.encodeproject.org/files/ENCFF281XVX/@@download/ENCFF281XVX.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF357YLS bigWig signal p-value ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF127ZPW, ENCFF171OVT 278339590 ENCODE Processing Pipeline 9baf4df3fd68b5ce08dcd69596229e6c https://www.encodeproject.org/files/ENCFF357YLS/@@download/ENCFF357YLS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF203TPL bigBed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF446YOW 10613443 ENCODE Processing Pipeline a234b1cca385659d5078525f3ad97f63 https://www.encodeproject.org/files/ENCFF203TPL/@@download/ENCFF203TPL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF758ELY bigWig signal p-value ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF239NFK 272939163 ENCODE Processing Pipeline b83b1d3f2148038adf7cf7f1fa4b91f4 https://www.encodeproject.org/files/ENCFF758ELY/@@download/ENCFF758ELY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF439KTC bigWig signal p-value ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127ZPW, ENCFF171OVT, ENCFF239NFK 309522751 ENCODE Processing Pipeline b3ac12881ccf4e6603981d0d63c35353 https://www.encodeproject.org/files/ENCFF439KTC/@@download/ENCFF439KTC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF580LGN bigWig fold change over control ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF127ZPW, ENCFF171OVT 269240649 ENCODE Processing Pipeline 000e14781ae4c59288fc18f9f5074a00 https://www.encodeproject.org/files/ENCFF580LGN/@@download/ENCFF580LGN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF507TVF bigWig fold change over control ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF239NFK 260349243 ENCODE Processing Pipeline 52246e8e04f1d04db37b183fe456bbbc https://www.encodeproject.org/files/ENCFF507TVF/@@download/ENCFF507TVF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF760BIB bigWig fold change over control ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127ZPW, ENCFF171OVT, ENCFF239NFK 430215358 ENCODE Processing Pipeline 08d55c9255121c43bcbfbfd6b3de5b7d https://www.encodeproject.org/files/ENCFF760BIB/@@download/ENCFF760BIB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF446YOW bed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF127ZPW, ENCFF171OVT 5121407 ENCODE Processing Pipeline 7b2078cb40c9a5233b31cdbeea64b27f https://www.encodeproject.org/files/ENCFF446YOW/@@download/ENCFF446YOW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF827MBR bed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF239NFK 5346849 ENCODE Processing Pipeline 714d7e52925d0891879a8eb1211c793d https://www.encodeproject.org/files/ENCFF827MBR/@@download/ENCFF827MBR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF291AZL bigBed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF827MBR 12634067 ENCODE Processing Pipeline 7445fa5d32fc46e642b94327bc28658a https://www.encodeproject.org/files/ENCFF291AZL/@@download/ENCFF291AZL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF947DWW bed narrowPeak conservative idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF281XVX, ENCFF446YOW, ENCFF547MET, ENCFF827MBR 661016 ENCODE Processing Pipeline ab3edde354bbcc83f2f9ca9124565892 https://www.encodeproject.org/files/ENCFF947DWW/@@download/ENCFF947DWW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF054PAU bed narrowPeak optimal idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF281XVX, ENCFF446YOW, ENCFF547MET, ENCFF827MBR 736214 ENCODE Processing Pipeline e3802873a4c17c362ce5ea734845d1f1 https://www.encodeproject.org/files/ENCFF054PAU/@@download/ENCFF054PAU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF704ZPN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF947DWW 1206264 ENCODE Processing Pipeline 9ba2f1930a1617752faff25c556597d5 https://www.encodeproject.org/files/ENCFF704ZPN/@@download/ENCFF704ZPN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF022BJK bigBed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF281XVX 13090627 ENCODE Processing Pipeline 0aaefbfd3890c136a8895bc415970eea https://www.encodeproject.org/files/ENCFF022BJK/@@download/ENCFF022BJK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF841BJW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF054PAU 1591337 ENCODE Processing Pipeline a523f22e3900fee7f78ab802bead8b99 https://www.encodeproject.org/files/ENCFF841BJW/@@download/ENCFF841BJW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms biological replicates with identical biosample ENCFF001NMV bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NMY 434867737 Michael Snyder, Stanford b4257095f00b3fef29c15a05874d10b5 https://www.encodeproject.org/files/ENCFF001NMV/@@download/ENCFF001NMV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NMW bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NNA 499685986 Michael Snyder, Stanford 39c004380f40f9931a236af0d0c4422b https://www.encodeproject.org/files/ENCFF001NMW/@@download/ENCFF001NMW.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NMX bigBed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIU 614405 Michael Snyder, Stanford 960fefaaf7c96e49889f23f2e6a2e088 https://www.encodeproject.org/files/ENCFF001NMX/@@download/ENCFF001NMX.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NMY fastq reads ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 789170204 Michael Snyder, Stanford 6474968bb588670c94c5f0113a446b58 https://www.encodeproject.org/files/ENCFF001NMY/@@download/ENCFF001NMY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NNA fastq reads ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1053191117 Michael Snyder, Stanford f79ffa893be8f82d5bda0ab080e71c98 https://www.encodeproject.org/files/ENCFF001NNA/@@download/ENCFF001NNA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NNC bigWig signal ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMV, ENCFF001NMW 155057190 Michael Snyder, Stanford bab74e7933a4050bdf367070816ea3e1 https://www.encodeproject.org/files/ENCFF001NNC/@@download/ENCFF001NNC.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001YIU bed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMV, ENCFF001NMW 223563 Michael Snyder, Stanford 80bce0fc5fc62c99185ea6f929ba62a4 https://www.encodeproject.org/files/ENCFF001YIU/@@download/ENCFF001YIU.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF212IDJ bam unfiltered alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNA, ENCFF018NEO 1113627334 ENCODE Processing Pipeline 3f49fd361432e0363d36c9d55a6d9dd0 https://www.encodeproject.org/files/ENCFF212IDJ/@@download/ENCFF212IDJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF465BKE bam unfiltered alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMY, ENCFF018NEO 862217209 ENCODE Processing Pipeline 2838d72ea8bffd0b52e0db063f50d890 https://www.encodeproject.org/files/ENCFF465BKE/@@download/ENCFF465BKE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF434UMB bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMY, ENCFF018NEO 578305981 ENCODE Processing Pipeline 9a1ee1dce97f6ce5a9cfb63a4794099d https://www.encodeproject.org/files/ENCFF434UMB/@@download/ENCFF434UMB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF346RIK bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNA, ENCFF018NEO 675903221 ENCODE Processing Pipeline 826ee8b8ac6f5809558a9fe7edc18ef3 https://www.encodeproject.org/files/ENCFF346RIK/@@download/ENCFF346RIK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF404VOT bigWig signal p-value ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF434UMB 236356901 ENCODE Processing Pipeline 50cc99870fc514e615843e8f81ca36bb https://www.encodeproject.org/files/ENCFF404VOT/@@download/ENCFF404VOT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF860ULT bigWig fold change over control ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF346RIK 265596823 ENCODE Processing Pipeline 4ae23db74e4a6f97dd66b06403255524 https://www.encodeproject.org/files/ENCFF860ULT/@@download/ENCFF860ULT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF122IIZ bigWig signal p-value ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF346RIK 231437466 ENCODE Processing Pipeline 95ec0796f9e3f31911f3413a0a3e7989 https://www.encodeproject.org/files/ENCFF122IIZ/@@download/ENCFF122IIZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF348JOY bigWig signal p-value ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF346RIK, ENCFF434UMB 205757614 ENCODE Processing Pipeline 6735df58d63df2c628e4242cace81c02 https://www.encodeproject.org/files/ENCFF348JOY/@@download/ENCFF348JOY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF087DLY bigWig fold change over control ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF434UMB 253071733 ENCODE Processing Pipeline e8086ceb4cec4e845ebb9d6ef301b879 https://www.encodeproject.org/files/ENCFF087DLY/@@download/ENCFF087DLY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF133UFU bigWig fold change over control ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF346RIK, ENCFF434UMB 456654191 ENCODE Processing Pipeline 0e6ba9a0282ec94662366edf70b9788b https://www.encodeproject.org/files/ENCFF133UFU/@@download/ENCFF133UFU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF636ZRW bed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF434UMB 5030095 ENCODE Processing Pipeline 2c902b4b7eca81f431ade627d18ff88a https://www.encodeproject.org/files/ENCFF636ZRW/@@download/ENCFF636ZRW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF931CZF bed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF346RIK 5257817 ENCODE Processing Pipeline c16c54e86899f065decd63330c01e561 https://www.encodeproject.org/files/ENCFF931CZF/@@download/ENCFF931CZF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF860QAI bed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF346RIK, ENCFF434UMB 5846332 ENCODE Processing Pipeline b282b9d437e8220651f473da85d790e6 https://www.encodeproject.org/files/ENCFF860QAI/@@download/ENCFF860QAI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF155VQX bigBed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF636ZRW 12641533 ENCODE Processing Pipeline 5d59013616879b3b448e02db41ab71a0 https://www.encodeproject.org/files/ENCFF155VQX/@@download/ENCFF155VQX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF286RTG bigBed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF931CZF 12724099 ENCODE Processing Pipeline 51ea2c9ba2a91fc9f099b36ea86e633e https://www.encodeproject.org/files/ENCFF286RTG/@@download/ENCFF286RTG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF735JUB bed narrowPeak conservative idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF636ZRW, ENCFF860QAI, ENCFF931CZF 316889 ENCODE Processing Pipeline 9cd7e75b2bab6faf21de63621c91b3c5 https://www.encodeproject.org/files/ENCFF735JUB/@@download/ENCFF735JUB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF182KFL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF735JUB 714671 ENCODE Processing Pipeline bb32cb89d94cd6aae38436347c83b8bc https://www.encodeproject.org/files/ENCFF182KFL/@@download/ENCFF182KFL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF332AWP bigBed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF860QAI 12716126 ENCODE Processing Pipeline 29677b82bef8099fe4b8421bea1cfeb7 https://www.encodeproject.org/files/ENCFF332AWP/@@download/ENCFF332AWP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF184NQJ bed narrowPeak optimal idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF636ZRW, ENCFF860QAI, ENCFF931CZF 324673 ENCODE Processing Pipeline de8404d8fe9504773c93c66f6f2cebe0 https://www.encodeproject.org/files/ENCFF184NQJ/@@download/ENCFF184NQJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF243MKI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF184NQJ 727636 ENCODE Processing Pipeline 0cfbbcdf97c068e6080c3017d5f072e0 https://www.encodeproject.org/files/ENCFF243MKI/@@download/ENCFF243MKI.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF654AKM fastq reads ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 666784504 Michael Snyder, Stanford 071078533b597fe19dde57d894eefe5d https://www.encodeproject.org/files/ENCFF654AKM/@@download/ENCFF654AKM.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF982TNR bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF125CLY 663735865 Michael Snyder, Stanford 125c75e7753062e3c0b9d0d4414f6fc1 https://www.encodeproject.org/files/ENCFF982TNR/@@download/ENCFF982TNR.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF996YQZ bed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF251NRS, ENCFF982TNR 275556 Michael Snyder, Stanford db911ded34d545de34bc48d4b3351d2e https://www.encodeproject.org/files/ENCFF996YQZ/@@download/ENCFF996YQZ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF125CLY fastq reads ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 625024634 Michael Snyder, Stanford 4196967234d2ae7911797d9ca50fcd08 https://www.encodeproject.org/files/ENCFF125CLY/@@download/ENCFF125CLY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF251NRS bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF654AKM 665994673 Michael Snyder, Stanford 05852df717b63ad0a79627a4b70a3521 https://www.encodeproject.org/files/ENCFF251NRS/@@download/ENCFF251NRS.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF138CKI bigBed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF996YQZ 601962 ENCODE Consortium b737c9b5922b7af8a156978329b5e553 https://www.encodeproject.org/files/ENCFF138CKI/@@download/ENCFF138CKI.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF481LSJ bam unfiltered alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF125CLY 872468446 ENCODE Processing Pipeline 758cb5f5e011640359ba4cc4966a3a56 https://www.encodeproject.org/files/ENCFF481LSJ/@@download/ENCFF481LSJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF204JXN bam unfiltered alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF654AKM 891547128 ENCODE Processing Pipeline a29f873f5ab3b4ad9de83162c0805000 https://www.encodeproject.org/files/ENCFF204JXN/@@download/ENCFF204JXN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF484OES bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF125CLY 580227677 ENCODE Processing Pipeline 70e35cd4eaa9e8b1a2f424d2f9f7759e https://www.encodeproject.org/files/ENCFF484OES/@@download/ENCFF484OES.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF316WLC bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF654AKM 564131551 ENCODE Processing Pipeline 0d5d6c081424c2ee5be2cf41cb19ce5f https://www.encodeproject.org/files/ENCFF316WLC/@@download/ENCFF316WLC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF791SCN bigWig signal p-value ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF484OES 238802280 ENCODE Processing Pipeline 5a8370b27109d56da5153e5aee1bce2f https://www.encodeproject.org/files/ENCFF791SCN/@@download/ENCFF791SCN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF220KUW bigWig signal p-value ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF316WLC, ENCFF339ZWC 237532165 ENCODE Processing Pipeline 446f332aad3c529984e4db4bc2ddc37e https://www.encodeproject.org/files/ENCFF220KUW/@@download/ENCFF220KUW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF847ESC bigWig signal p-value ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316WLC, ENCFF339ZWC, ENCFF484OES 235197853 ENCODE Processing Pipeline ffa2251f63fa89b5688dac9e707c97fb https://www.encodeproject.org/files/ENCFF847ESC/@@download/ENCFF847ESC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF379PYM bigWig fold change over control ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF484OES 256262195 ENCODE Processing Pipeline 90a2c351abdd995f05e0a7f152047737 https://www.encodeproject.org/files/ENCFF379PYM/@@download/ENCFF379PYM.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF784SHD bigWig fold change over control ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF316WLC, ENCFF339ZWC 246084702 ENCODE Processing Pipeline bcadb3270d33e2c5ca4b6e10cd0ca91e https://www.encodeproject.org/files/ENCFF784SHD/@@download/ENCFF784SHD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF285ZBQ bed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF316WLC, ENCFF339ZWC 962184 ENCODE Processing Pipeline 0181078431f81c7cab56e991b583e14b https://www.encodeproject.org/files/ENCFF285ZBQ/@@download/ENCFF285ZBQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF994TGI bed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316WLC, ENCFF339ZWC, ENCFF484OES 4901275 ENCODE Processing Pipeline 9efc7e206eebb8608fc952e96689f4ac https://www.encodeproject.org/files/ENCFF994TGI/@@download/ENCFF994TGI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF904GMZ bigBed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF301YAS 1345951 ENCODE Processing Pipeline 5ce895f659333f9402299b4186f63857 https://www.encodeproject.org/files/ENCFF904GMZ/@@download/ENCFF904GMZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF022MWL bigBed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF285ZBQ 2084368 ENCODE Processing Pipeline 1f50f0dc830597d6eafaf667d8900993 https://www.encodeproject.org/files/ENCFF022MWL/@@download/ENCFF022MWL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF193AYX bigWig fold change over control ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316WLC, ENCFF339ZWC, ENCFF484OES 431781946 ENCODE Processing Pipeline 8c996ecfc57261e237d6c8c114f4e8e6 https://www.encodeproject.org/files/ENCFF193AYX/@@download/ENCFF193AYX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF301YAS bed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF484OES 588331 ENCODE Processing Pipeline 4019844e54ecf4b2a81d0bbc2b511ea0 https://www.encodeproject.org/files/ENCFF301YAS/@@download/ENCFF301YAS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF196BKU bigBed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF994TGI 10625070 ENCODE Processing Pipeline 8ef6fbf076b8a7f1780658b55af6f248 https://www.encodeproject.org/files/ENCFF196BKU/@@download/ENCFF196BKU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF529JOF bigBed narrowPeak conservative idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF758VCU 261656 ENCODE Processing Pipeline 5b0426fd5493210e534dd7c37207106f https://www.encodeproject.org/files/ENCFF529JOF/@@download/ENCFF529JOF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF758VCU bed narrowPeak conservative idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF285ZBQ, ENCFF301YAS, ENCFF547MET, ENCFF994TGI 133894 ENCODE Processing Pipeline 7faa68957af7a16c0e91665b3a5d38a4 https://www.encodeproject.org/files/ENCFF758VCU/@@download/ENCFF758VCU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF976EGR bigBed narrowPeak optimal idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF353DJA 343654 ENCODE Processing Pipeline e930efe4a389f3ca5c097c6bfbdd663b https://www.encodeproject.org/files/ENCFF976EGR/@@download/ENCFF976EGR.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF353DJA bed narrowPeak optimal idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF285ZBQ, ENCFF301YAS, ENCFF547MET, ENCFF994TGI 146661 ENCODE Processing Pipeline a6e07c6f4faf7b8e3a9d8c28972946c7 https://www.encodeproject.org/files/ENCFF353DJA/@@download/ENCFF353DJA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF001NHF bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NHI 537002367 Michael Snyder, Stanford fd3e0f95ee0d0504c3a6ca9d81503983 https://www.encodeproject.org/files/ENCFF001NHF/@@download/ENCFF001NHF.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NHG bigBed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIA 767082 Michael Snyder, Stanford 0884d4eede6d9e98c3187117d5f28909 https://www.encodeproject.org/files/ENCFF001NHG/@@download/ENCFF001NHG.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NHH bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NHK 527852059 Michael Snyder, Stanford 2e79f064ea40379344db0f602d15b067 https://www.encodeproject.org/files/ENCFF001NHH/@@download/ENCFF001NHH.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NHI fastq reads ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 1053336778 Michael Snyder, Stanford 3863d0399302d94f8d2c9619d7fe6891 https://www.encodeproject.org/files/ENCFF001NHI/@@download/ENCFF001NHI.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NHK fastq reads ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1052341181 Michael Snyder, Stanford 38f155522e83813bd635214cd1c2d0b8 https://www.encodeproject.org/files/ENCFF001NHK/@@download/ENCFF001NHK.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NHN bigWig signal ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NHF, ENCFF001NHH 224465008 Michael Snyder, Stanford 54d05de3ed3176dc831ecd936c218d6f https://www.encodeproject.org/files/ENCFF001NHN/@@download/ENCFF001NHN.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001YIA bed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NHF, ENCFF001NHH 297641 Michael Snyder, Stanford 61d1b42f3075c6fb23566f01642cc6ad https://www.encodeproject.org/files/ENCFF001YIA/@@download/ENCFF001YIA.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF993WLO bam unfiltered alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHK, ENCFF018NEO 1106589761 ENCODE Processing Pipeline db4d81899ac507a3d9c63b4147718e67 https://www.encodeproject.org/files/ENCFF993WLO/@@download/ENCFF993WLO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF149RJR bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHK, ENCFF018NEO 733180981 ENCODE Processing Pipeline c1c2bde27e1aabac1bf232c5368f927a https://www.encodeproject.org/files/ENCFF149RJR/@@download/ENCFF149RJR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF110TNT bam unfiltered alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NHI, ENCFF018NEO 1097543956 ENCODE Processing Pipeline f1c5b9a2d6f476d03edc53ff99a1fc70 https://www.encodeproject.org/files/ENCFF110TNT/@@download/ENCFF110TNT.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF770XWC bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NHI, ENCFF018NEO 725490839 ENCODE Processing Pipeline 17b6d1456ba76173f77936e8d66b8805 https://www.encodeproject.org/files/ENCFF770XWC/@@download/ENCFF770XWC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF812PZT bigWig signal p-value ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF149RJR, ENCFF339ZWC 237884107 ENCODE Processing Pipeline 8d0ee30d3c2522dc80672e86579e95fe https://www.encodeproject.org/files/ENCFF812PZT/@@download/ENCFF812PZT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF104CZP bigWig signal p-value ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF770XWC 239144636 ENCODE Processing Pipeline 2e1116fe474dec7baa6603a7353af211 https://www.encodeproject.org/files/ENCFF104CZP/@@download/ENCFF104CZP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF578ROY bigWig signal p-value ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF149RJR, ENCFF339ZWC, ENCFF770XWC 222850652 ENCODE Processing Pipeline d3d271afa023d2b73381e6825773fe54 https://www.encodeproject.org/files/ENCFF578ROY/@@download/ENCFF578ROY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF446RRZ bigWig fold change over control ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF770XWC 298954886 ENCODE Processing Pipeline 1417bba49228d8a09643b217dcc84e20 https://www.encodeproject.org/files/ENCFF446RRZ/@@download/ENCFF446RRZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF253RRP bigWig fold change over control ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF149RJR, ENCFF339ZWC 286161740 ENCODE Processing Pipeline 29faa482185b9ce235d38ff30800ebd2 https://www.encodeproject.org/files/ENCFF253RRP/@@download/ENCFF253RRP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF984NJU bed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF149RJR, ENCFF339ZWC 4288212 ENCODE Processing Pipeline 368d71205f05d8058bb9b63f87f9ef22 https://www.encodeproject.org/files/ENCFF984NJU/@@download/ENCFF984NJU.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF388WVI bed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF770XWC 5362530 ENCODE Processing Pipeline a1104738b9ef965f052823f4355523d6 https://www.encodeproject.org/files/ENCFF388WVI/@@download/ENCFF388WVI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF781WYP bigWig fold change over control ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF149RJR, ENCFF339ZWC, ENCFF770XWC 503055799 ENCODE Processing Pipeline c78d3d6b8a977b2492bcea21a590758a https://www.encodeproject.org/files/ENCFF781WYP/@@download/ENCFF781WYP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF205TLF bigBed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF388WVI 12854896 ENCODE Processing Pipeline 450198b3c89973ad58733fd89f290c45 https://www.encodeproject.org/files/ENCFF205TLF/@@download/ENCFF205TLF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF710VPX bed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF149RJR, ENCFF339ZWC, ENCFF770XWC 6008726 ENCODE Processing Pipeline ab362a76dd5ab456ad54c0f621f58371 https://www.encodeproject.org/files/ENCFF710VPX/@@download/ENCFF710VPX.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF195FEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF072JMS 817321 ENCODE Processing Pipeline 752e7ba096be847354a8c436f38e7f70 https://www.encodeproject.org/files/ENCFF195FEB/@@download/ENCFF195FEB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF434CIF bigBed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF984NJU 10142313 ENCODE Processing Pipeline 3c38213e4697ac5b8ecd4472632c2995 https://www.encodeproject.org/files/ENCFF434CIF/@@download/ENCFF434CIF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF072JMS bed narrowPeak optimal idr thresholded peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF388WVI, ENCFF547MET, ENCFF710VPX, ENCFF984NJU 401037 ENCODE Processing Pipeline a49088963d6e8e4c4e243c445c63e8fc https://www.encodeproject.org/files/ENCFF072JMS/@@download/ENCFF072JMS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF441EKK bigBed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF710VPX 12932322 ENCODE Processing Pipeline fe82285b5a72aba2d44947aaaa261c61 https://www.encodeproject.org/files/ENCFF441EKK/@@download/ENCFF441EKK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001NGB bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NGE 405620721 Michael Snyder, Stanford 011f2fc5cef25e4d3f41d5e9a1973e2d https://www.encodeproject.org/files/ENCFF001NGB/@@download/ENCFF001NGB.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGD bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHW 3884553 Michael Snyder, Stanford d2041b4278f93aa1b0d9d1ecfcb6ad62 https://www.encodeproject.org/files/ENCFF001NGD/@@download/ENCFF001NGD.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGE fastq reads ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 804002258 Michael Snyder, Stanford 272ab82012b2eb959a176cfce71c108d https://www.encodeproject.org/files/ENCFF001NGE/@@download/ENCFF001NGE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGG fastq reads ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 858847445 Michael Snyder, Stanford d35ff42974e72d764fc99ccf2755359e https://www.encodeproject.org/files/ENCFF001NGG/@@download/ENCFF001NGG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGI bigWig signal ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGB, ENCFF001NGJ 303666172 Michael Snyder, Stanford bccc5b2f53b7022bf9e3b85fd85b135b https://www.encodeproject.org/files/ENCFF001NGI/@@download/ENCFF001NGI.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NGJ bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NGG 412790445 Michael Snyder, Stanford 82a6a5667f1f4aebce1a248dcf935b52 https://www.encodeproject.org/files/ENCFF001NGJ/@@download/ENCFF001NGJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001YHW bed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGB, ENCFF001NGJ 1538306 Michael Snyder, Stanford 0fd36ea125257b6e698325d97cb3e2e1 https://www.encodeproject.org/files/ENCFF001YHW/@@download/ENCFF001YHW.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF286DUD bam unfiltered alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 836449151 ENCODE Processing Pipeline 2e25339ab90ad1e2949b0a6afcaa037a https://www.encodeproject.org/files/ENCFF286DUD/@@download/ENCFF286DUD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF292PNZ bam unfiltered alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 870081064 ENCODE Processing Pipeline 4e4ee63d6041c48664ec88590d5e913a https://www.encodeproject.org/files/ENCFF292PNZ/@@download/ENCFF292PNZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF131PLT bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 562408943 ENCODE Processing Pipeline dbd4fedfe0f411370eede0734eae9e51 https://www.encodeproject.org/files/ENCFF131PLT/@@download/ENCFF131PLT.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF449KFK bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 565439135 ENCODE Processing Pipeline 7c11067724dcab9ca6209c59cae0ac52 https://www.encodeproject.org/files/ENCFF449KFK/@@download/ENCFF449KFK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF189YQN bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 231337681 ENCODE Processing Pipeline ed3164d5970faac679961e66ac0fa19d https://www.encodeproject.org/files/ENCFF189YQN/@@download/ENCFF189YQN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF456ZQW bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 232144935 ENCODE Processing Pipeline 3f24ce3f641b27fb8686f5b6f739afb1 https://www.encodeproject.org/files/ENCFF456ZQW/@@download/ENCFF456ZQW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF696AUE bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 215391653 ENCODE Processing Pipeline 670b46875facc1d6477b5883a113e1dd https://www.encodeproject.org/files/ENCFF696AUE/@@download/ENCFF696AUE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF641JPY bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 240285666 ENCODE Processing Pipeline a6cd0070734d27c2923e7d44b7939bf5 https://www.encodeproject.org/files/ENCFF641JPY/@@download/ENCFF641JPY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF504YYO bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 237586020 ENCODE Processing Pipeline 2b180adb4bf324bb43df0a249ebddad8 https://www.encodeproject.org/files/ENCFF504YYO/@@download/ENCFF504YYO.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF021GBR bed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 3001862 ENCODE Processing Pipeline bfbe6cd57cd7f2924b1db8657a77e831 https://www.encodeproject.org/files/ENCFF021GBR/@@download/ENCFF021GBR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF025UEN bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 406550892 ENCODE Processing Pipeline 22c79636d1422b70effc0084a724c17a https://www.encodeproject.org/files/ENCFF025UEN/@@download/ENCFF025UEN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF892SBI bed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 4650878 ENCODE Processing Pipeline 30bfb8a28dc5b4b72832c74c09ea15aa https://www.encodeproject.org/files/ENCFF892SBI/@@download/ENCFF892SBI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF720ZXB bed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 4675280 ENCODE Processing Pipeline 1ebcc4d2149810c9bf57d2c44a1fc569 https://www.encodeproject.org/files/ENCFF720ZXB/@@download/ENCFF720ZXB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF860CJT bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF892SBI 10403895 ENCODE Processing Pipeline 19673f9c8465418ca6ca29d68eb29fe8 https://www.encodeproject.org/files/ENCFF860CJT/@@download/ENCFF860CJT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF408BFU bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF720ZXB 10489720 ENCODE Processing Pipeline 33e1ac5b76742399f37d6e6273307656 https://www.encodeproject.org/files/ENCFF408BFU/@@download/ENCFF408BFU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF242HXC bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR 5940737 ENCODE Processing Pipeline 3a28cae7ac8907e3a5cecfd09ae80dcf https://www.encodeproject.org/files/ENCFF242HXC/@@download/ENCFF242HXC.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF504KIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF612IQZ 2031741 ENCODE Processing Pipeline 17f3d7401153b03af2d2692bde6bf73d https://www.encodeproject.org/files/ENCFF504KIJ/@@download/ENCFF504KIJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF739OMJ bed narrowPeak optimal idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR, ENCFF547MET, ENCFF720ZXB, ENCFF892SBI 1030359 ENCODE Processing Pipeline e9525ea80812e160b7f33e45dfeed555 https://www.encodeproject.org/files/ENCFF739OMJ/@@download/ENCFF739OMJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF612IQZ bed narrowPeak conservative idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR, ENCFF547MET, ENCFF720ZXB, ENCFF892SBI 994390 ENCODE Processing Pipeline de6877ce8114d7870c1fc44f643329f5 https://www.encodeproject.org/files/ENCFF612IQZ/@@download/ENCFF612IQZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF461IQT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF739OMJ 2086109 ENCODE Processing Pipeline 5442bbab2b38cc2a43e34e555267263a https://www.encodeproject.org/files/ENCFF461IQT/@@download/ENCFF461IQT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NPP bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NQA 377750269 Michael Snyder, Stanford cec02462d29c06d5160267338df28852 https://www.encodeproject.org/files/ENCFF001NPP/@@download/ENCFF001NPP.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NPQ bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NQG 397872977 Michael Snyder, Stanford c3a899de1d8fbac48b8e2512f1c0b533 https://www.encodeproject.org/files/ENCFF001NPQ/@@download/ENCFF001NPQ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NPR bigBed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YJD 282244 Michael Snyder, Stanford 9136a70c3b62c906ae8bb4edc9088a20 https://www.encodeproject.org/files/ENCFF001NPR/@@download/ENCFF001NPR.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NPV bigWig signal ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NPP, ENCFF001NPQ 303056755 Michael Snyder, Stanford 536aa065f5a4549235e2d810e36a043c https://www.encodeproject.org/files/ENCFF001NPV/@@download/ENCFF001NPV.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NQA fastq reads ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 716368501 Michael Snyder, Stanford 64976867f5b72a18ed1c682f95d2f190 https://www.encodeproject.org/files/ENCFF001NQA/@@download/ENCFF001NQA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NQG fastq reads ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 829109806 Michael Snyder, Stanford 69f482d3dcce968145159c3aeaf8440e https://www.encodeproject.org/files/ENCFF001NQG/@@download/ENCFF001NQG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001YJD bed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NPP, ENCFF001NPQ 95151 Michael Snyder, Stanford a72483bf362751017e68218b43f78c59 https://www.encodeproject.org/files/ENCFF001YJD/@@download/ENCFF001YJD.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF955BOV bam unfiltered alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NQG, ENCFF018NEO 984891697 ENCODE Processing Pipeline 9e9626ef2e0ce5a9e678fd69c15cca47 https://www.encodeproject.org/files/ENCFF955BOV/@@download/ENCFF955BOV.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF973GHE bam unfiltered alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NQA, ENCFF018NEO 864327112 ENCODE Processing Pipeline f4fb5f34716a74709f56e4e60bed82ca https://www.encodeproject.org/files/ENCFF973GHE/@@download/ENCFF973GHE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF724HAL bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NQG, ENCFF018NEO 582059911 ENCODE Processing Pipeline 93f6e20ba4bc06b5964cbe2e00735f8f https://www.encodeproject.org/files/ENCFF724HAL/@@download/ENCFF724HAL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF329AUN bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NQA, ENCFF018NEO 551292962 ENCODE Processing Pipeline 0b70041bc9599b608f822fa56de8e527 https://www.encodeproject.org/files/ENCFF329AUN/@@download/ENCFF329AUN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF247HCR bigWig signal p-value ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF329AUN 326769090 ENCODE Processing Pipeline a9312962ba4a6cb01e363b87902b2fa3 https://www.encodeproject.org/files/ENCFF247HCR/@@download/ENCFF247HCR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF174KEE bigWig signal p-value ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF724HAL 279865090 ENCODE Processing Pipeline 5497ceb56d81ec7591a85385f8a67acb https://www.encodeproject.org/files/ENCFF174KEE/@@download/ENCFF174KEE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF428NKW bigWig fold change over control ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF329AUN, ENCFF724HAL 448437046 ENCODE Processing Pipeline 5e28497fab05ba6d19ab095896d9cc4c https://www.encodeproject.org/files/ENCFF428NKW/@@download/ENCFF428NKW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF401WSP bigWig signal p-value ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF329AUN, ENCFF724HAL 313198601 ENCODE Processing Pipeline 02779c488c3c535909062b1466b4c2cc https://www.encodeproject.org/files/ENCFF401WSP/@@download/ENCFF401WSP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF592DMT bigWig fold change over control ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF724HAL 272097858 ENCODE Processing Pipeline af51cd31a28f11e8badce460f1a9ac92 https://www.encodeproject.org/files/ENCFF592DMT/@@download/ENCFF592DMT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF841UND bed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF329AUN, ENCFF724HAL 5359366 ENCODE Processing Pipeline af4045a4f9e21d314e9095f7ef2efa21 https://www.encodeproject.org/files/ENCFF841UND/@@download/ENCFF841UND.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF918HQN bigWig fold change over control ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF329AUN 260677592 ENCODE Processing Pipeline 3f96b50473f226387784149a428db586 https://www.encodeproject.org/files/ENCFF918HQN/@@download/ENCFF918HQN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF075ENR bed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF724HAL 4792342 ENCODE Processing Pipeline cfae6eb1db2948045cda2cbb74388606 https://www.encodeproject.org/files/ENCFF075ENR/@@download/ENCFF075ENR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF984VHT bigBed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF841UND 10809346 ENCODE Processing Pipeline ede7b02fabd1069c704f0e1b2b92cfc5 https://www.encodeproject.org/files/ENCFF984VHT/@@download/ENCFF984VHT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF345FTL bed narrowPeak optimal idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF075ENR, ENCFF547MET, ENCFF610JIV, ENCFF841UND 191722 ENCODE Processing Pipeline cf2b0536f1f8f619441e10fb32511465 https://www.encodeproject.org/files/ENCFF345FTL/@@download/ENCFF345FTL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF610JIV bed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF329AUN 4778385 ENCODE Processing Pipeline ef18598a1dec3d3b96094a2cdf946743 https://www.encodeproject.org/files/ENCFF610JIV/@@download/ENCFF610JIV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF561IFL bigBed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF610JIV 10678901 ENCODE Processing Pipeline 0008c88042187975ac515152ab340561 https://www.encodeproject.org/files/ENCFF561IFL/@@download/ENCFF561IFL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF627NXI bigBed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF075ENR 10631673 ENCODE Processing Pipeline 9ff9546438a95326fec8a01cc2128b4c https://www.encodeproject.org/files/ENCFF627NXI/@@download/ENCFF627NXI.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF316XIC bed narrowPeak conservative idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF075ENR, ENCFF547MET, ENCFF610JIV, ENCFF841UND 183421 ENCODE Processing Pipeline 5392277a9dca17d8168856bdd157829c https://www.encodeproject.org/files/ENCFF316XIC/@@download/ENCFF316XIC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF409WMK bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF316XIC 367002 ENCODE Processing Pipeline 100ad6a9086d36e364b4f62b01d98284 https://www.encodeproject.org/files/ENCFF409WMK/@@download/ENCFF409WMK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF618CQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF345FTL 379262 ENCODE Processing Pipeline d8b730fd0a27eca0afc086862744f8f8 https://www.encodeproject.org/files/ENCFF618CQV/@@download/ENCFF618CQV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NXG bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NYE 436876510 Michael Snyder, Stanford 95ad1e6ba491ec0ee72628fdd1992101 https://www.encodeproject.org/files/ENCFF001NXG/@@download/ENCFF001NXG.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NXK bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NYA 488414444 Michael Snyder, Stanford 51d32fa33a7f37d4e180d3dc20715f84 https://www.encodeproject.org/files/ENCFF001NXK/@@download/ENCFF001NXK.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NXL bigWig signal ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NXG, ENCFF001NXK 349821225 Michael Snyder, Stanford 46e9dc00c5351985523fbf3b1df0503d https://www.encodeproject.org/files/ENCFF001NXL/@@download/ENCFF001NXL.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NYA fastq reads ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 968478204 Michael Snyder, Stanford 7840bcc97bc1c553da07d0d5d58daf59 https://www.encodeproject.org/files/ENCFF001NYA/@@download/ENCFF001NYA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001NYE fastq reads ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 1652369687 Michael Snyder, Stanford e0b40aba30f2ac2010d4aa9ceaae744b https://www.encodeproject.org/files/ENCFF001NYE/@@download/ENCFF001NYE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF798RJI bed narrowPeak peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NXG, ENCFF001NXK 510074 ENCODE Consortium 81a120a7d5aba04e40d33f0b004a58d2 https://www.encodeproject.org/files/ENCFF798RJI/@@download/ENCFF798RJI.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF633GUP bam unfiltered alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NYA, ENCFF018NEO 1143749151 ENCODE Processing Pipeline 5e415bd466706830564f72082d7477f3 https://www.encodeproject.org/files/ENCFF633GUP/@@download/ENCFF633GUP.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF391ZKT bam unfiltered alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NYE, ENCFF018NEO 1894292859 ENCODE Processing Pipeline 9083a5d499cd1f4b1fe5aa074cf7e0dc https://www.encodeproject.org/files/ENCFF391ZKT/@@download/ENCFF391ZKT.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF052YOZ bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NYA, ENCFF018NEO 743891732 ENCODE Processing Pipeline 40fc1e0dcdbef80a72eceff5e43d617a https://www.encodeproject.org/files/ENCFF052YOZ/@@download/ENCFF052YOZ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF689KZB bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NYE, ENCFF018NEO 1181345622 ENCODE Processing Pipeline dd4dd81cad60f7ea5c86d10ad81370cc https://www.encodeproject.org/files/ENCFF689KZB/@@download/ENCFF689KZB.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF373ILW bigWig signal p-value ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF052YOZ, ENCFF171OVT, ENCFF689KZB 281474599 ENCODE Processing Pipeline e6fd480e66c7f9d36d71c7e95ea63795 https://www.encodeproject.org/files/ENCFF373ILW/@@download/ENCFF373ILW.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF478KOH bigWig fold change over control ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF689KZB 422584276 ENCODE Processing Pipeline e5246f6087f9a0f657c95087fedc2554 https://www.encodeproject.org/files/ENCFF478KOH/@@download/ENCFF478KOH.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF188EKK bigWig signal p-value ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF689KZB 306489096 ENCODE Processing Pipeline 98a119daac99b189aa388031eb08d91b https://www.encodeproject.org/files/ENCFF188EKK/@@download/ENCFF188EKK.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF904NKT bigWig fold change over control ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF052YOZ, ENCFF171OVT 322156644 ENCODE Processing Pipeline 6a85d53a8ac34529f32c913ca096fafe https://www.encodeproject.org/files/ENCFF904NKT/@@download/ENCFF904NKT.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF941FDR bed narrowPeak optimal idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF352UNG, ENCFF547MET, ENCFF582KWA, ENCFF665HJW 647297 ENCODE Processing Pipeline 8f2410cfb9221aeb53f8f5757315afbd https://www.encodeproject.org/files/ENCFF941FDR/@@download/ENCFF941FDR.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF836PLO bigWig signal p-value ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF052YOZ, ENCFF171OVT 301468768 ENCODE Processing Pipeline 53b11111c99f6e395299ee1e697a3336 https://www.encodeproject.org/files/ENCFF836PLO/@@download/ENCFF836PLO.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF325EHX bigWig fold change over control ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF052YOZ, ENCFF171OVT, ENCFF689KZB 624509006 ENCODE Processing Pipeline c7ab0ffc0fbe0e98b894234063d2b081 https://www.encodeproject.org/files/ENCFF325EHX/@@download/ENCFF325EHX.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF582KWA bed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF052YOZ, ENCFF171OVT 5438654 ENCODE Processing Pipeline efa8c6f989db89a5dd1b6d2bc6b18b75 https://www.encodeproject.org/files/ENCFF582KWA/@@download/ENCFF582KWA.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF665HJW bed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF689KZB 5936543 ENCODE Processing Pipeline ebaab6f4acaa1e2e949d82e7f54f35c1 https://www.encodeproject.org/files/ENCFF665HJW/@@download/ENCFF665HJW.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF258RTG bigBed narrowPeak peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF582KWA 12772057 ENCODE Processing Pipeline f2de37d6affa7bad535dae695e54bcbb https://www.encodeproject.org/files/ENCFF258RTG/@@download/ENCFF258RTG.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF858ODF bigBed narrowPeak peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF665HJW 13037049 ENCODE Processing Pipeline f5a7bc57130548e31e3b4149c569a38f https://www.encodeproject.org/files/ENCFF858ODF/@@download/ENCFF858ODF.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF533IYF bigBed narrowPeak peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF352UNG 13064236 ENCODE Processing Pipeline 3ce79dcac07f2af2bcfac0fb80f70f64 https://www.encodeproject.org/files/ENCFF533IYF/@@download/ENCFF533IYF.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF167JOI bed narrowPeak conservative idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF352UNG, ENCFF547MET, ENCFF582KWA, ENCFF665HJW 606296 ENCODE Processing Pipeline 636254116ace41107993078b8c49cca6 https://www.encodeproject.org/files/ENCFF167JOI/@@download/ENCFF167JOI.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF807CHY bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF941FDR 1154778 ENCODE Processing Pipeline 0e6691f9fdce3133b0e69e5adc8d88a1 https://www.encodeproject.org/files/ENCFF807CHY/@@download/ENCFF807CHY.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF352UNG bed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF052YOZ, ENCFF171OVT, ENCFF689KZB 6478886 ENCODE Processing Pipeline 623cfadda313b7837f36a93ea35a9245 https://www.encodeproject.org/files/ENCFF352UNG/@@download/ENCFF352UNG.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF998OXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF167JOI 1098187 ENCODE Processing Pipeline 803408fa969c4b23ca8f4dece5d75726 https://www.encodeproject.org/files/ENCFF998OXZ/@@download/ENCFF998OXZ.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001NFS bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NFV 490068584 Michael Snyder, Stanford f36552af2f3326a09b63b8b02c391c90 https://www.encodeproject.org/files/ENCFF001NFS/@@download/ENCFF001NFS.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001NFU bigBed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YHV 925489 Michael Snyder, Stanford b31ed42d6a1993997da6233415173e1e https://www.encodeproject.org/files/ENCFF001NFU/@@download/ENCFF001NFU.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001NFV fastq reads ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 922302704 Michael Snyder, Stanford 2a124aca27e619a187404707ed92bb80 https://www.encodeproject.org/files/ENCFF001NFV/@@download/ENCFF001NFV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001NFX fastq reads ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1231369423 Michael Snyder, Stanford 7f3be493716f27ba97d767dfdbaa0e74 https://www.encodeproject.org/files/ENCFF001NFX/@@download/ENCFF001NFX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001NFZ bigWig signal ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NFS, ENCFF001NGA 367992395 Michael Snyder, Stanford 36bc6d8834eed47cb42f06cc3cfa893f https://www.encodeproject.org/files/ENCFF001NFZ/@@download/ENCFF001NFZ.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001NGA bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NFX 599883459 Michael Snyder, Stanford 43ff0358c85450383cd2938ffa1bb543 https://www.encodeproject.org/files/ENCFF001NGA/@@download/ENCFF001NGA.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001YHV bed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NFS, ENCFF001NGA 435791 Michael Snyder, Stanford f77d02c1aab88e3494ca7c27ecd5ac5b https://www.encodeproject.org/files/ENCFF001YHV/@@download/ENCFF001YHV.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF942TRM bam unfiltered alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NFV, ENCFF018NEO 1006078940 ENCODE Processing Pipeline ce00ca89ca1c7de59afbdb339ff19c98 https://www.encodeproject.org/files/ENCFF942TRM/@@download/ENCFF942TRM.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF639IMI bam unfiltered alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NFX, ENCFF018NEO 1330389773 ENCODE Processing Pipeline dfd1ef3728775349356ae31d42b25fbf https://www.encodeproject.org/files/ENCFF639IMI/@@download/ENCFF639IMI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF852WML bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NFV, ENCFF018NEO 665237378 ENCODE Processing Pipeline dab97deefdab40c36c7016aca145672e https://www.encodeproject.org/files/ENCFF852WML/@@download/ENCFF852WML.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF803ESS bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NFX, ENCFF018NEO 859759657 ENCODE Processing Pipeline 491c7a6e3187808d0f25965e4e99cfc2 https://www.encodeproject.org/files/ENCFF803ESS/@@download/ENCFF803ESS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF580FCF bigWig signal p-value ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF852WML 232273005 ENCODE Processing Pipeline abb776fef3c61fd8a62b9d186e8b8b69 https://www.encodeproject.org/files/ENCFF580FCF/@@download/ENCFF580FCF.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF811RYH bigWig signal p-value ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF803ESS 215207142 ENCODE Processing Pipeline e6fee6391b49597941ec1f043cde70ea https://www.encodeproject.org/files/ENCFF811RYH/@@download/ENCFF811RYH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF368SFE bigWig fold change over control ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF852WML 278744779 ENCODE Processing Pipeline 76e87a99bf34ce4171b49a5720c0bce9 https://www.encodeproject.org/files/ENCFF368SFE/@@download/ENCFF368SFE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF191PQC bigWig signal p-value ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF803ESS, ENCFF852WML 222242221 ENCODE Processing Pipeline f2a45582ea421d85d855dbf4600d868f https://www.encodeproject.org/files/ENCFF191PQC/@@download/ENCFF191PQC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF739TFD bigWig fold change over control ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF803ESS 340225012 ENCODE Processing Pipeline b3c6b43376d51e284e602d3809e499c7 https://www.encodeproject.org/files/ENCFF739TFD/@@download/ENCFF739TFD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF982BHY bed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF852WML 5004826 ENCODE Processing Pipeline 36d176606ef6918775132fd90207f372 https://www.encodeproject.org/files/ENCFF982BHY/@@download/ENCFF982BHY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF210EXT bigWig fold change over control ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF803ESS, ENCFF852WML 528116488 ENCODE Processing Pipeline 3458c114ca094072e9f60dc304d486e2 https://www.encodeproject.org/files/ENCFF210EXT/@@download/ENCFF210EXT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF015NGN bed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF803ESS, ENCFF852WML 5778208 ENCODE Processing Pipeline 3383160453ed884573861773b12b0a74 https://www.encodeproject.org/files/ENCFF015NGN/@@download/ENCFF015NGN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF125MUD bed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF803ESS 5101910 ENCODE Processing Pipeline f9976f7c60612e5a93dd2d8fd6275348 https://www.encodeproject.org/files/ENCFF125MUD/@@download/ENCFF125MUD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF768BYN bigBed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF982BHY 12607889 ENCODE Processing Pipeline 66ce93a6ae8d8c877e19b6744b4e9859 https://www.encodeproject.org/files/ENCFF768BYN/@@download/ENCFF768BYN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF348FRF bigBed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF125MUD 12769342 ENCODE Processing Pipeline b043cdf7866bd3024e0855821cbdd6ed https://www.encodeproject.org/files/ENCFF348FRF/@@download/ENCFF348FRF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF057KEC bigBed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF015NGN 12811121 ENCODE Processing Pipeline b7698ba1dc9ff543a26feb458fd559f8 https://www.encodeproject.org/files/ENCFF057KEC/@@download/ENCFF057KEC.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF737UCD bed narrowPeak optimal idr thresholded peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF015NGN, ENCFF125MUD, ENCFF547MET, ENCFF982BHY 245870 ENCODE Processing Pipeline be36fb4686aa2c84539dd2fcc5ba6964 https://www.encodeproject.org/files/ENCFF737UCD/@@download/ENCFF737UCD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF780VDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF737UCD 508330 ENCODE Processing Pipeline 39b327410f83f3958777437bd07a86ec https://www.encodeproject.org/files/ENCFF780VDR/@@download/ENCFF780VDR.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF001NGK bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NHQ 304937143 Michael Snyder, Stanford 87927857c063c3f752e9a2ea90a638df https://www.encodeproject.org/files/ENCFF001NGK/@@download/ENCFF001NGK.bam mm9 released low read length, low read depth insufficient replicate concordance ENCFF001NGL bigBed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHX 230357 Michael Snyder, Stanford ab7f8bb219bbaab9632e656b1dbdb602 https://www.encodeproject.org/files/ENCFF001NGL/@@download/ENCFF001NGL.bigBed mm9 released low read length, low read depth insufficient replicate concordance ENCFF001NGM bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NHM 227558602 Michael Snyder, Stanford 07cde03ffd439e15cd565067660eba73 https://www.encodeproject.org/files/ENCFF001NGM/@@download/ENCFF001NGM.bam mm9 released low read length, low read depth insufficient replicate concordance ENCFF001NGN bigWig signal ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGK, ENCFF001NGM 238887123 Michael Snyder, Stanford 6bbfda2667038a8af8478322ac0224ff https://www.encodeproject.org/files/ENCFF001NGN/@@download/ENCFF001NGN.bigWig mm9 released low read length, low read depth insufficient replicate concordance ENCFF001NHM fastq reads ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 876700294 Michael Snyder, Stanford a93447b896a8ccf35f75010b2e382cf8 https://www.encodeproject.org/files/ENCFF001NHM/@@download/ENCFF001NHM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth insufficient replicate concordance ENCFF001NHQ fastq reads ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1137497571 Michael Snyder, Stanford 75a37eed97475482f310dcb11483a96d https://www.encodeproject.org/files/ENCFF001NHQ/@@download/ENCFF001NHQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth insufficient replicate concordance ENCFF001YHX bed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGK, ENCFF001NGM 69771 Michael Snyder, Stanford 131691f25548935225f203364af59ac2 https://www.encodeproject.org/files/ENCFF001YHX/@@download/ENCFF001YHX.bed.gz mm9 released low read length, low read depth insufficient replicate concordance ENCFF440AZX bam unfiltered alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NHM, ENCFF018NEO 996523832 ENCODE Processing Pipeline 48599d514982e5a994b7cda231aa486f https://www.encodeproject.org/files/ENCFF440AZX/@@download/ENCFF440AZX.bam mm10 released low read length, low read depth insufficient replicate concordance ENCFF226AEO bam unfiltered alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NHQ, ENCFF018NEO 1284584654 ENCODE Processing Pipeline becb37e7b21ecc625bfb6e1e10029326 https://www.encodeproject.org/files/ENCFF226AEO/@@download/ENCFF226AEO.bam mm10 released low read length, low read depth insufficient replicate concordance ENCFF313WTS bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NHM, ENCFF018NEO 545405032 ENCODE Processing Pipeline 7028bc3ea4ddbb1877e69e54743170be https://www.encodeproject.org/files/ENCFF313WTS/@@download/ENCFF313WTS.bam mm10 released low read length, low read depth insufficient replicate concordance ENCFF328JKM bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NHQ, ENCFF018NEO 650937340 ENCODE Processing Pipeline 87c542ece54f9c525e8d3ef88564f6c4 https://www.encodeproject.org/files/ENCFF328JKM/@@download/ENCFF328JKM.bam mm10 released low read length, low read depth insufficient replicate concordance ENCFF507NQA bigWig signal p-value ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF328JKM, ENCFF339ZWC 239010458 ENCODE Processing Pipeline b86088c4dbffdbe68742231c2e4b045c https://www.encodeproject.org/files/ENCFF507NQA/@@download/ENCFF507NQA.bigWig mm10 released low read length, low read depth insufficient replicate concordance ENCFF750OIA bigWig signal p-value ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF313WTS, ENCFF328JKM, ENCFF339ZWC 233514532 ENCODE Processing Pipeline 37536152c2e1b7daea65d6fa531f1160 https://www.encodeproject.org/files/ENCFF750OIA/@@download/ENCFF750OIA.bigWig mm10 released low read length, low read depth insufficient replicate concordance ENCFF643MFI bigWig signal p-value ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF313WTS, ENCFF339ZWC 218893712 ENCODE Processing Pipeline b1108b23028efd3cf96033ceb5203289 https://www.encodeproject.org/files/ENCFF643MFI/@@download/ENCFF643MFI.bigWig mm10 released low read length, low read depth insufficient replicate concordance ENCFF381BWQ bigWig fold change over control ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF328JKM, ENCFF339ZWC 237956023 ENCODE Processing Pipeline ef95150abb2e7a010c1144644bf78a5b https://www.encodeproject.org/files/ENCFF381BWQ/@@download/ENCFF381BWQ.bigWig mm10 released low read length, low read depth insufficient replicate concordance ENCFF753FNM bigWig fold change over control ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF313WTS, ENCFF339ZWC 198628488 ENCODE Processing Pipeline 40a5fe5233accb85451828f4300dd4a4 https://www.encodeproject.org/files/ENCFF753FNM/@@download/ENCFF753FNM.bigWig mm10 released low read length, low read depth insufficient replicate concordance ENCFF162FEM bigWig fold change over control ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF313WTS, ENCFF328JKM, ENCFF339ZWC 380205351 ENCODE Processing Pipeline 4c415958bd520f7dc3b9fc30e61461bc https://www.encodeproject.org/files/ENCFF162FEM/@@download/ENCFF162FEM.bigWig mm10 released low read length, low read depth insufficient replicate concordance ENCFF099HHW bed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF328JKM, ENCFF339ZWC 101505 ENCODE Processing Pipeline eaec7817c60b6464615b4ae0dea163ce https://www.encodeproject.org/files/ENCFF099HHW/@@download/ENCFF099HHW.bed.gz mm10 released low read length, low read depth insufficient replicate concordance ENCFF346XAW bigBed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF099HHW 298671 ENCODE Processing Pipeline eb133265ba2fa693417fcc3e6c9727fd https://www.encodeproject.org/files/ENCFF346XAW/@@download/ENCFF346XAW.bigBed mm10 released low read length, low read depth insufficient replicate concordance ENCFF632ZQE bed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF313WTS, ENCFF339ZWC 4491592 ENCODE Processing Pipeline 4a5bcd6fd00c977911dfc2ff8fcc9d28 https://www.encodeproject.org/files/ENCFF632ZQE/@@download/ENCFF632ZQE.bed.gz mm10 released low read length, low read depth insufficient replicate concordance ENCFF211VZG bed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF313WTS, ENCFF328JKM, ENCFF339ZWC 4878071 ENCODE Processing Pipeline dc5979a804655ca7769ef48ad8314aec https://www.encodeproject.org/files/ENCFF211VZG/@@download/ENCFF211VZG.bed.gz mm10 released low read length, low read depth insufficient replicate concordance ENCFF029WYQ bigBed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF632ZQE 10093053 ENCODE Processing Pipeline fac77aebb445634a7d89ce65795163b8 https://www.encodeproject.org/files/ENCFF029WYQ/@@download/ENCFF029WYQ.bigBed mm10 released low read length, low read depth insufficient replicate concordance ENCFF486IVR bed narrowPeak optimal idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF099HHW, ENCFF211VZG, ENCFF547MET, ENCFF632ZQE 120469 ENCODE Processing Pipeline 8686434c9474ab0865f3270ca2e2c2b5 https://www.encodeproject.org/files/ENCFF486IVR/@@download/ENCFF486IVR.bed.gz mm10 released low read length, low read depth insufficient replicate concordance ENCFF420NNT bigBed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF211VZG 10637981 ENCODE Processing Pipeline c450c55cf444f03b70b6b821c38835c1 https://www.encodeproject.org/files/ENCFF420NNT/@@download/ENCFF420NNT.bigBed mm10 released low read length, low read depth insufficient replicate concordance ENCFF889SKV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF768LHT 84709 ENCODE Processing Pipeline c33019b6b16bbb756ac4c347852f28fe https://www.encodeproject.org/files/ENCFF889SKV/@@download/ENCFF889SKV.bigBed mm10 released low read length, low read depth insufficient replicate concordance ENCFF768LHT bed narrowPeak conservative idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF099HHW, ENCFF211VZG, ENCFF547MET, ENCFF632ZQE 18365 ENCODE Processing Pipeline cd42623923c039238be7b6d1de2bea7c https://www.encodeproject.org/files/ENCFF768LHT/@@download/ENCFF768LHT.bed.gz mm10 released low read length, low read depth insufficient replicate concordance ENCFF828TJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF486IVR 265860 ENCODE Processing Pipeline ee39fc8eb621872e1bd0a95cdf3d195a https://www.encodeproject.org/files/ENCFF828TJS/@@download/ENCFF828TJS.bigBed mm10 released low read length, low read depth insufficient replicate concordance ENCFF001OAU bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001OAX 451999632 Michael Snyder, Stanford fc42c30bfe30cec414b43ebcc438e5d7 https://www.encodeproject.org/files/ENCFF001OAU/@@download/ENCFF001OAU.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OAV bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OAZ 510893993 Michael Snyder, Stanford c7d2a13d98c2dcdc1fc80a77c34c5277 https://www.encodeproject.org/files/ENCFF001OAV/@@download/ENCFF001OAV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OAW bigBed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKL 581219 Michael Snyder, Stanford 5e0e5348258da4a5f67d0d7968262a53 https://www.encodeproject.org/files/ENCFF001OAW/@@download/ENCFF001OAW.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OAX fastq reads ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 922940872 Michael Snyder, Stanford 86e1b41f014b98b182e03c430bf545ac https://www.encodeproject.org/files/ENCFF001OAX/@@download/ENCFF001OAX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OAZ fastq reads ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 985534876 Michael Snyder, Stanford b76237984bfd5538c066998590046e0d https://www.encodeproject.org/files/ENCFF001OAZ/@@download/ENCFF001OAZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBB bigWig signal ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OAU, ENCFF001OAV 425753413 Michael Snyder, Stanford 3d21b093060924b124eba88c022baece https://www.encodeproject.org/files/ENCFF001OBB/@@download/ENCFF001OBB.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YKL bed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OAU, ENCFF001OAV 252446 Michael Snyder, Stanford d1d0b98bff251b9788a500a048162d85 https://www.encodeproject.org/files/ENCFF001YKL/@@download/ENCFF001YKL.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF260VDK bam unfiltered alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OAX, ENCFF018NEO 1001992051 ENCODE Processing Pipeline 296dd60c6ba50c82ff8f4c3b0ddbc551 https://www.encodeproject.org/files/ENCFF260VDK/@@download/ENCFF260VDK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF968XRQ bam unfiltered alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAZ, ENCFF018NEO 1081843815 ENCODE Processing Pipeline c9012282aaae3e915b4ce8b022a00e81 https://www.encodeproject.org/files/ENCFF968XRQ/@@download/ENCFF968XRQ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF145YHD bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAZ, ENCFF018NEO 691803605 ENCODE Processing Pipeline d5967270938634d2c43b9e70780fb8b6 https://www.encodeproject.org/files/ENCFF145YHD/@@download/ENCFF145YHD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF945QLN bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OAX, ENCFF018NEO 604631045 ENCODE Processing Pipeline 4de3b81ce969c0711f5644ab890f7bb2 https://www.encodeproject.org/files/ENCFF945QLN/@@download/ENCFF945QLN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF658EZY bigWig signal p-value ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF145YHD, ENCFF171OVT, ENCFF945QLN 315590185 ENCODE Processing Pipeline 2aa016f905d020fa7529538f2afcd88d https://www.encodeproject.org/files/ENCFF658EZY/@@download/ENCFF658EZY.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF273QJV bed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF145YHD, ENCFF171OVT, ENCFF945QLN 5025264 ENCODE Processing Pipeline fd632230a95dcfe7373307784779b4cc https://www.encodeproject.org/files/ENCFF273QJV/@@download/ENCFF273QJV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF656ZJV bigWig signal p-value ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF945QLN 300982711 ENCODE Processing Pipeline 7d9134e3721f32aa4c6da0014c95edf7 https://www.encodeproject.org/files/ENCFF656ZJV/@@download/ENCFF656ZJV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF308QHU bigWig signal p-value ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF145YHD, ENCFF171OVT 331632326 ENCODE Processing Pipeline 6eb5abe2670f74e919c43044830bf79a https://www.encodeproject.org/files/ENCFF308QHU/@@download/ENCFF308QHU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF715AQW bed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF145YHD, ENCFF171OVT 4450417 ENCODE Processing Pipeline b05ec5cc9c892c00755e3cc79c123620 https://www.encodeproject.org/files/ENCFF715AQW/@@download/ENCFF715AQW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF856TOM bigBed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF715AQW 10412539 ENCODE Processing Pipeline f3d2829dcee51d370a270272a515ad3b https://www.encodeproject.org/files/ENCFF856TOM/@@download/ENCFF856TOM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF235YHK bed narrowPeak optimal idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF273QJV, ENCFF547MET, ENCFF628USD, ENCFF715AQW 385653 ENCODE Processing Pipeline 7680aaf37ea7486439262f5660a821a3 https://www.encodeproject.org/files/ENCFF235YHK/@@download/ENCFF235YHK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF417EAD bigWig fold change over control ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF145YHD, ENCFF171OVT, ENCFF945QLN 510071222 ENCODE Processing Pipeline 96b2b25a4ff6048f6169d7640d6ca4e7 https://www.encodeproject.org/files/ENCFF417EAD/@@download/ENCFF417EAD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF981FOC bed narrowPeak conservative idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF273QJV, ENCFF547MET, ENCFF628USD, ENCFF715AQW 379249 ENCODE Processing Pipeline a1e93f9dadb62c1641f549677382ca99 https://www.encodeproject.org/files/ENCFF981FOC/@@download/ENCFF981FOC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF015AVF bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF981FOC 682541 ENCODE Processing Pipeline d4fb09193d5f749ffc7a7e1774b33ee4 https://www.encodeproject.org/files/ENCFF015AVF/@@download/ENCFF015AVF.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF780NMA bigWig fold change over control ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF945QLN 272891961 ENCODE Processing Pipeline 1f3a04f8346e506853182e5941f5adc3 https://www.encodeproject.org/files/ENCFF780NMA/@@download/ENCFF780NMA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF353DTE bigBed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF273QJV 10849277 ENCODE Processing Pipeline 3c3486000327a3d5ce989954a6f1d483 https://www.encodeproject.org/files/ENCFF353DTE/@@download/ENCFF353DTE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF137VTC bigWig fold change over control ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF145YHD, ENCFF171OVT 316536015 ENCODE Processing Pipeline 346e0954b8de6374b938a89ab8fecd5e https://www.encodeproject.org/files/ENCFF137VTC/@@download/ENCFF137VTC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF628USD bed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF945QLN 4276867 ENCODE Processing Pipeline 364a8e0ad48fe081a942e427149f21ca https://www.encodeproject.org/files/ENCFF628USD/@@download/ENCFF628USD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF976EUP bigBed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF628USD 10148256 ENCODE Processing Pipeline 4a172d58696079225c49602ce1ff9927 https://www.encodeproject.org/files/ENCFF976EUP/@@download/ENCFF976EUP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF721OLH bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF235YHK 692306 ENCODE Processing Pipeline 4ac2d4faa25df648bd8d9a20ab9e8854 https://www.encodeproject.org/files/ENCFF721OLH/@@download/ENCFF721OLH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NEN bigBed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHQ 2381252 Michael Snyder, Stanford 45e39895daafcd789a622a01e15ca007 https://www.encodeproject.org/files/ENCFF001NEN/@@download/ENCFF001NEN.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001NEO fastq reads ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 988831705 Michael Snyder, Stanford 9d40dd4db8c3a312691a1d26a5226d29 https://www.encodeproject.org/files/ENCFF001NEO/@@download/ENCFF001NEO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001NEQ fastq reads ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1300337811 Michael Snyder, Stanford 63c971b703b9f2b0870a2cd01fa85063 https://www.encodeproject.org/files/ENCFF001NEQ/@@download/ENCFF001NEQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001NES bigWig signal ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NET, ENCFF001NEU 373926097 Michael Snyder, Stanford 3018877a2b9e1fa8440afd8e14c329e9 https://www.encodeproject.org/files/ENCFF001NES/@@download/ENCFF001NES.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001NET bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NEO 521690159 Michael Snyder, Stanford c57929ee0a29efb08f47443a1899579d https://www.encodeproject.org/files/ENCFF001NET/@@download/ENCFF001NET.bam mm9 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001NEU bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NEQ 596235428 Michael Snyder, Stanford 0762f2993b0e5c794499aa9ff616865d https://www.encodeproject.org/files/ENCFF001NEU/@@download/ENCFF001NEU.bam mm9 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001YHQ bed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NET, ENCFF001NEU 1028121 Michael Snyder, Stanford 4e1fd93b70bb35c7ca9e554fc7082e7c https://www.encodeproject.org/files/ENCFF001YHQ/@@download/ENCFF001YHQ.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF933NFU bam unfiltered alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NEO, ENCFF018NEO 1074560094 ENCODE Processing Pipeline ebf66bac902e5a07f81caba3ae493886 https://www.encodeproject.org/files/ENCFF933NFU/@@download/ENCFF933NFU.bam mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF834CYL bam unfiltered alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NEQ, ENCFF018NEO 1379000019 ENCODE Processing Pipeline 0c3e80a5d594bb34d3a17df4c1e543c2 https://www.encodeproject.org/files/ENCFF834CYL/@@download/ENCFF834CYL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF487MBJ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NEQ, ENCFF018NEO 944782207 ENCODE Processing Pipeline 6dbe349c984318d4c8ac029d746dd73a https://www.encodeproject.org/files/ENCFF487MBJ/@@download/ENCFF487MBJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF650EPZ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NEO, ENCFF018NEO 737187547 ENCODE Processing Pipeline cacacbdafbd2c36836cb2194c2d2196e https://www.encodeproject.org/files/ENCFF650EPZ/@@download/ENCFF650EPZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF286WBV bigWig signal p-value ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF650EPZ 241722847 ENCODE Processing Pipeline 8d116857c30ad5bd8da7c3a598668563 https://www.encodeproject.org/files/ENCFF286WBV/@@download/ENCFF286WBV.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF866TNK bigWig signal p-value ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF487MBJ 224782959 ENCODE Processing Pipeline 432d9ff5c018903602d6ad605a442516 https://www.encodeproject.org/files/ENCFF866TNK/@@download/ENCFF866TNK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF353KBR bigWig signal p-value ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF487MBJ, ENCFF650EPZ 211735954 ENCODE Processing Pipeline 8677ed0169cfef84ad1f37b16c1c505d https://www.encodeproject.org/files/ENCFF353KBR/@@download/ENCFF353KBR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF033VZG bigWig fold change over control ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF650EPZ 291764734 ENCODE Processing Pipeline ff4d76dc49e7f5632508aaac887350af https://www.encodeproject.org/files/ENCFF033VZG/@@download/ENCFF033VZG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF948UKQ bigWig fold change over control ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF487MBJ 353365051 ENCODE Processing Pipeline d0dbe67acbc0591edf23c3495d2967af https://www.encodeproject.org/files/ENCFF948UKQ/@@download/ENCFF948UKQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF647KNH bed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF650EPZ 4557130 ENCODE Processing Pipeline 322cbdce88cfa45b1a4f45959934da19 https://www.encodeproject.org/files/ENCFF647KNH/@@download/ENCFF647KNH.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF065TVE bed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF487MBJ, ENCFF650EPZ 6039030 ENCODE Processing Pipeline b808590b517f94b590c006f58a9d3418 https://www.encodeproject.org/files/ENCFF065TVE/@@download/ENCFF065TVE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF351GDC bigBed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF647KNH 10605279 ENCODE Processing Pipeline 43838ef6312b23cf6bd5abf099e956f2 https://www.encodeproject.org/files/ENCFF351GDC/@@download/ENCFF351GDC.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF668KLU bigWig fold change over control ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF487MBJ, ENCFF650EPZ 552160371 ENCODE Processing Pipeline 69f3ea7aef036c79d810ad58d43d6bf6 https://www.encodeproject.org/files/ENCFF668KLU/@@download/ENCFF668KLU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF918DGZ bed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF487MBJ 2785093 ENCODE Processing Pipeline d47c850c1addc7a8a6354edd7133580c https://www.encodeproject.org/files/ENCFF918DGZ/@@download/ENCFF918DGZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF811RHL bed narrowPeak conservative idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065TVE, ENCFF547MET, ENCFF647KNH, ENCFF918DGZ 628220 ENCODE Processing Pipeline 0ebc407632b2925ffcdd38d70baaf402 https://www.encodeproject.org/files/ENCFF811RHL/@@download/ENCFF811RHL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF176KHM bigBed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065TVE 13094033 ENCODE Processing Pipeline fd2abf07eca47f1a4b83adbe50acadb7 https://www.encodeproject.org/files/ENCFF176KHM/@@download/ENCFF176KHM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF645WRI bed narrowPeak optimal idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065TVE, ENCFF547MET, ENCFF647KNH, ENCFF918DGZ 822744 ENCODE Processing Pipeline 868982edc07ebcd6523a7f5f84f1b431 https://www.encodeproject.org/files/ENCFF645WRI/@@download/ENCFF645WRI.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF741TSH bigBed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF918DGZ 5941771 ENCODE Processing Pipeline ec6469fd2cb9512a59335fb76bc0b003 https://www.encodeproject.org/files/ENCFF741TSH/@@download/ENCFF741TSH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF532OQP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF645WRI 1468308 ENCODE Processing Pipeline 6ebb2e3d60699d39cb65b05c58d20433 https://www.encodeproject.org/files/ENCFF532OQP/@@download/ENCFF532OQP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF491UHV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF811RHL 1188681 ENCODE Processing Pipeline 3b1ef754141a3136044808a63b8f212d https://www.encodeproject.org/files/ENCFF491UHV/@@download/ENCFF491UHV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF001NEV bigBed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YHR 340471 Michael Snyder, Stanford e32db2daae7e7d3efe63e7380e98f8c4 https://www.encodeproject.org/files/ENCFF001NEV/@@download/ENCFF001NEV.bigBed mm9 released low read length, low read depth, inconsistent platforms ENCFF001NEW fastq reads ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 982781920 Michael Snyder, Stanford 471b11377370328fa8611fcb4eb7267d https://www.encodeproject.org/files/ENCFF001NEW/@@download/ENCFF001NEW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms ENCFF001NEY fastq reads ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 838855592 Michael Snyder, Stanford 8d045b4d6f721da922941f106dd97aaa https://www.encodeproject.org/files/ENCFF001NEY/@@download/ENCFF001NEY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, low read depth, inconsistent platforms ENCFF001NFA bigWig signal ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NFB, ENCFF001NFC 213869973 Michael Snyder, Stanford a18cc3aa24b01c5f177d828ff46054a7 https://www.encodeproject.org/files/ENCFF001NFA/@@download/ENCFF001NFA.bigWig mm9 released low read length, low read depth, inconsistent platforms ENCFF001NFB bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NEW 480692338 Michael Snyder, Stanford 00ad03ab6b8af4ee91a9a620db4b824a https://www.encodeproject.org/files/ENCFF001NFB/@@download/ENCFF001NFB.bam mm9 released low read length, low read depth, inconsistent platforms ENCFF001NFC bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NEY 449982888 Michael Snyder, Stanford b2b67a0fe1452691292f89e4187895c0 https://www.encodeproject.org/files/ENCFF001NFC/@@download/ENCFF001NFC.bam mm9 released low read length, low read depth, inconsistent platforms ENCFF001YHR bed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NFB, ENCFF001NFC 117604 Michael Snyder, Stanford 0fc258b57e3d4c56baec6c221ea6a2a7 https://www.encodeproject.org/files/ENCFF001YHR/@@download/ENCFF001YHR.bed.gz mm9 released low read length, low read depth, inconsistent platforms ENCFF340ZIU bam unfiltered alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NEW, ENCFF018NEO 1063286485 ENCODE Processing Pipeline 29ced180670bfe0b271e73ae3c1e3c48 https://www.encodeproject.org/files/ENCFF340ZIU/@@download/ENCFF340ZIU.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF555MXH bam unfiltered alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NEY, ENCFF018NEO 910914465 ENCODE Processing Pipeline 245a1972d76200c9f416c7164653a850 https://www.encodeproject.org/files/ENCFF555MXH/@@download/ENCFF555MXH.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF702BLC bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NEW, ENCFF018NEO 713227360 ENCODE Processing Pipeline dbd2c5609d047e8c1a2429babd3712fe https://www.encodeproject.org/files/ENCFF702BLC/@@download/ENCFF702BLC.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF413NFE bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NEY, ENCFF018NEO 623110394 ENCODE Processing Pipeline 0b393f3741b720708e4efa8a02967e1a https://www.encodeproject.org/files/ENCFF413NFE/@@download/ENCFF413NFE.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF137CEW bigWig signal p-value ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF702BLC 235357446 ENCODE Processing Pipeline ab37e55ec4b8b39fd8f39a9e56439686 https://www.encodeproject.org/files/ENCFF137CEW/@@download/ENCFF137CEW.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF519DKI bigWig signal p-value ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF413NFE 227231578 ENCODE Processing Pipeline d70a48dd8e2cb5f8cc3c23ad2191aa3e https://www.encodeproject.org/files/ENCFF519DKI/@@download/ENCFF519DKI.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF350SJN bigWig signal p-value ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF413NFE, ENCFF702BLC 216753119 ENCODE Processing Pipeline 21b36f6fbfacf86d08f6c261d930413e https://www.encodeproject.org/files/ENCFF350SJN/@@download/ENCFF350SJN.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF002VGD bigWig fold change over control ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF702BLC 292810537 ENCODE Processing Pipeline aea99e2697c5e936b2346521ee03713c https://www.encodeproject.org/files/ENCFF002VGD/@@download/ENCFF002VGD.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF501EDN bigWig fold change over control ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF413NFE 254747777 ENCODE Processing Pipeline 87aa03d9fc45b5131ba21385e8716bf0 https://www.encodeproject.org/files/ENCFF501EDN/@@download/ENCFF501EDN.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF217FQC bigWig fold change over control ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF413NFE, ENCFF702BLC 483920574 ENCODE Processing Pipeline 8cd7eca1a646df6582173184d408c9d4 https://www.encodeproject.org/files/ENCFF217FQC/@@download/ENCFF217FQC.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF750VUM bed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF413NFE 5678630 ENCODE Processing Pipeline 404237e0571fe95d2f9eccc2da42ebfd https://www.encodeproject.org/files/ENCFF750VUM/@@download/ENCFF750VUM.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF513MBD bed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF702BLC 5976060 ENCODE Processing Pipeline 06d9dd090e781aa4382133a3cbb9e532 https://www.encodeproject.org/files/ENCFF513MBD/@@download/ENCFF513MBD.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF295RUE bigBed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF513MBD 12710166 ENCODE Processing Pipeline 518e7bcd9aea54ebea986199b6126e81 https://www.encodeproject.org/files/ENCFF295RUE/@@download/ENCFF295RUE.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF063TGF bed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF413NFE, ENCFF702BLC 6567801 ENCODE Processing Pipeline 21453d7883046bec519bffc681002efd https://www.encodeproject.org/files/ENCFF063TGF/@@download/ENCFF063TGF.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF887ILM bigBed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF750VUM 12706186 ENCODE Processing Pipeline 8fa5350e6a1ea0227e315456f69868a8 https://www.encodeproject.org/files/ENCFF887ILM/@@download/ENCFF887ILM.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF296GPB bigBed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF063TGF 12603237 ENCODE Processing Pipeline d99be38e744a2a849a572ff2aa16ed7c https://www.encodeproject.org/files/ENCFF296GPB/@@download/ENCFF296GPB.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF811JIG bed narrowPeak conservative idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF063TGF, ENCFF513MBD, ENCFF547MET, ENCFF750VUM 314267 ENCODE Processing Pipeline bf19d7968758e776d1d6dd4747f7efd4 https://www.encodeproject.org/files/ENCFF811JIG/@@download/ENCFF811JIG.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF696PFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF811JIG 776110 ENCODE Processing Pipeline a36f0c12390e08afb948f86ec415fdee https://www.encodeproject.org/files/ENCFF696PFW/@@download/ENCFF696PFW.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF265CAB bed narrowPeak optimal idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF063TGF, ENCFF513MBD, ENCFF547MET, ENCFF750VUM 331303 ENCODE Processing Pipeline 8a8ad31a532c1f2279298bd5459a50a9 https://www.encodeproject.org/files/ENCFF265CAB/@@download/ENCFF265CAB.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF625BRI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF265CAB 813580 ENCODE Processing Pipeline ef1bfb255c605888cadbb29d27cf0f9b https://www.encodeproject.org/files/ENCFF625BRI/@@download/ENCFF625BRI.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF996MWJ fastq reads ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 591216480 Michael Snyder, Stanford 3987c43c487558b8920afee429b62517 https://www.encodeproject.org/files/ENCFF996MWJ/@@download/ENCFF996MWJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF907HUT bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF996MWJ 540844272 Michael Snyder, Stanford fd6570e31b799f7666da97f155a102ab https://www.encodeproject.org/files/ENCFF907HUT/@@download/ENCFF907HUT.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF286XMC bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF550MZG 853756212 Michael Snyder, Stanford 15fe55a6f5bdef7143d2c23ffd5816be https://www.encodeproject.org/files/ENCFF286XMC/@@download/ENCFF286XMC.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF316CSW bed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF286XMC, ENCFF907HUT 336665 Michael Snyder, Stanford 2043b4b88323b148c288ac0aca3df2ec https://www.encodeproject.org/files/ENCFF316CSW/@@download/ENCFF316CSW.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF550MZG fastq reads ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 854969794 Michael Snyder, Stanford d464f0e8c09eb281eb356342fcb29920 https://www.encodeproject.org/files/ENCFF550MZG/@@download/ENCFF550MZG.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF447VDV bigBed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316CSW 710343 ENCODE Consortium c762a64107f47f28eac4bb7385e8c02c https://www.encodeproject.org/files/ENCFF447VDV/@@download/ENCFF447VDV.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF336SLK bam unfiltered alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF996MWJ 763616821 ENCODE Processing Pipeline 4984397f1bec64cbd7b7ccabffab2e13 https://www.encodeproject.org/files/ENCFF336SLK/@@download/ENCFF336SLK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF225ILC bam unfiltered alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF550MZG 1167711935 ENCODE Processing Pipeline cd130a80805e4668c1eddb66ba188106 https://www.encodeproject.org/files/ENCFF225ILC/@@download/ENCFF225ILC.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF928UQF bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF996MWJ 394816691 ENCODE Processing Pipeline 29ec02c9c3704d56c043b35a490ba696 https://www.encodeproject.org/files/ENCFF928UQF/@@download/ENCFF928UQF.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF572FAR bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF550MZG 662970548 ENCODE Processing Pipeline 41118fc6c594c3cdfb4b1fc7805ae14f https://www.encodeproject.org/files/ENCFF572FAR/@@download/ENCFF572FAR.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF569LXK bed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF572FAR, ENCFF928UQF 2910114 ENCODE Processing Pipeline 4daffb7bc1a10c2eb6e4f9e25b4edc20 https://www.encodeproject.org/files/ENCFF569LXK/@@download/ENCFF569LXK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF487MRD bigWig signal p-value ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF572FAR 281959646 ENCODE Processing Pipeline cbaee38a78cdb9bb656333afb140fd1a https://www.encodeproject.org/files/ENCFF487MRD/@@download/ENCFF487MRD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF562POX bigWig fold change over control ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF928UQF 200478623 ENCODE Processing Pipeline 752b34de15fc3ea5151ce196087c3d91 https://www.encodeproject.org/files/ENCFF562POX/@@download/ENCFF562POX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF546TIA bigWig fold change over control ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF572FAR 276198047 ENCODE Processing Pipeline 320d53cbacf3cd7cbc4ebef53062e218 https://www.encodeproject.org/files/ENCFF546TIA/@@download/ENCFF546TIA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF156OSF bed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF928UQF 4567246 ENCODE Processing Pipeline e7fed781c7c9bebe61090b8452e36d4e https://www.encodeproject.org/files/ENCFF156OSF/@@download/ENCFF156OSF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF313EEA bigBed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF364BAN 10676208 ENCODE Processing Pipeline f0a7af45e0d6c718bd6c1a30ee4ba75b https://www.encodeproject.org/files/ENCFF313EEA/@@download/ENCFF313EEA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF611EIH bigWig signal p-value ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF572FAR, ENCFF928UQF 301693538 ENCODE Processing Pipeline 10b217faa784ea8a2ddc50b0b05f1ad7 https://www.encodeproject.org/files/ENCFF611EIH/@@download/ENCFF611EIH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF364BAN bed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF572FAR 4897484 ENCODE Processing Pipeline 6aae20c7b5f8694200fefa6915e9591c https://www.encodeproject.org/files/ENCFF364BAN/@@download/ENCFF364BAN.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF772EUC bed narrowPeak conservative idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF156OSF, ENCFF364BAN, ENCFF547MET, ENCFF569LXK 287140 ENCODE Processing Pipeline 21f6208ad1ec0da967b77475b5b9f0f0 https://www.encodeproject.org/files/ENCFF772EUC/@@download/ENCFF772EUC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF305UAP bigWig signal p-value ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF928UQF 242151149 ENCODE Processing Pipeline 011b2c3ff8c7ec357312126a976b72de https://www.encodeproject.org/files/ENCFF305UAP/@@download/ENCFF305UAP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF377WET bigWig fold change over control ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF572FAR, ENCFF928UQF 397517224 ENCODE Processing Pipeline 0e67dcbf5431731e7c0f5750944ac577 https://www.encodeproject.org/files/ENCFF377WET/@@download/ENCFF377WET.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF211XRB bigBed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF569LXK 6636616 ENCODE Processing Pipeline 19a96f0ae200c40e548be9ed6101aaea https://www.encodeproject.org/files/ENCFF211XRB/@@download/ENCFF211XRB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF184NNZ bigBed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF156OSF 10210451 ENCODE Processing Pipeline 28bc99a47a651b00081b8e91e32bc532 https://www.encodeproject.org/files/ENCFF184NNZ/@@download/ENCFF184NNZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF987ZSZ bed narrowPeak optimal idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF156OSF, ENCFF364BAN, ENCFF547MET, ENCFF569LXK 324326 ENCODE Processing Pipeline a48391f80ec9ed24eb322566535fedab https://www.encodeproject.org/files/ENCFF987ZSZ/@@download/ENCFF987ZSZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF960GZI bigBed narrowPeak conservative idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF772EUC 546612 ENCODE Processing Pipeline 86913c26c3adc244a9ff169aeda1532c https://www.encodeproject.org/files/ENCFF960GZI/@@download/ENCFF960GZI.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF176FJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF987ZSZ 599475 ENCODE Processing Pipeline 26b2789586d11eca16daa7f5b2005678 https://www.encodeproject.org/files/ENCFF176FJQ/@@download/ENCFF176FJQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms experiment not submitted to GEO, biological replicates with identical biosample ENCFF001NYB bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NYM 454765050 Michael Snyder, Stanford 77761fb4390780d01bae3e7fe30eb80a https://www.encodeproject.org/files/ENCFF001NYB/@@download/ENCFF001NYB.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NYC bigBed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKB 813765 Michael Snyder, Stanford aa956714063938cdba0b8a492b3df101 https://www.encodeproject.org/files/ENCFF001NYC/@@download/ENCFF001NYC.bigBed mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NYD bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NYQ 497166887 Michael Snyder, Stanford aae0c46c9d2da70689935a98b778365d https://www.encodeproject.org/files/ENCFF001NYD/@@download/ENCFF001NYD.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NYG bigWig signal ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYB, ENCFF001NYD 340216529 Michael Snyder, Stanford 514be36d09b1bac1f1faf22e8c7ab46b https://www.encodeproject.org/files/ENCFF001NYG/@@download/ENCFF001NYG.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NYM fastq reads ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 869695303 Michael Snyder, Stanford 4f84eda57d556e64db566a5afaf98e97 https://www.encodeproject.org/files/ENCFF001NYM/@@download/ENCFF001NYM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001NYQ fastq reads ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 969057436 Michael Snyder, Stanford 76c15821a69d07fd9835b05603498917 https://www.encodeproject.org/files/ENCFF001NYQ/@@download/ENCFF001NYQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth biological replicates with identical biosample ENCFF001YKB bed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYB, ENCFF001NYD 337689 Michael Snyder, Stanford 7a24fd77bec2b89b94fadd2c1d3ea810 https://www.encodeproject.org/files/ENCFF001YKB/@@download/ENCFF001YKB.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF812JVB bam unfiltered alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYQ, ENCFF018NEO 1112545065 ENCODE Processing Pipeline 9bb41770334e75bf12e96db3abd1a90d https://www.encodeproject.org/files/ENCFF812JVB/@@download/ENCFF812JVB.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF906LVL bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYQ, ENCFF018NEO 801826294 ENCODE Processing Pipeline a47fda7bd69d364dc655bfd785738738 https://www.encodeproject.org/files/ENCFF906LVL/@@download/ENCFF906LVL.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF764ZGJ bam unfiltered alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYM, ENCFF018NEO 1000505676 ENCODE Processing Pipeline 96ed6daaec0c1fbf46f2f59ae2544fe1 https://www.encodeproject.org/files/ENCFF764ZGJ/@@download/ENCFF764ZGJ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF956XJP bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYM, ENCFF018NEO 729332962 ENCODE Processing Pipeline 0541210e16251f367d3cc52573fd3afd https://www.encodeproject.org/files/ENCFF956XJP/@@download/ENCFF956XJP.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF996CJF bigBed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF541QIH 11465987 ENCODE Processing Pipeline 870551d5d5fc3b476ac5f83d3b3f7d5b https://www.encodeproject.org/files/ENCFF996CJF/@@download/ENCFF996CJF.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF645BFP bigWig signal p-value ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF956XJP 324481150 ENCODE Processing Pipeline e7806f45af6147839a9727a9f11c9bff https://www.encodeproject.org/files/ENCFF645BFP/@@download/ENCFF645BFP.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF193ZKP bed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF956XJP 7242329 ENCODE Processing Pipeline 398f65c7a0da69afec7f94e6170e3a15 https://www.encodeproject.org/files/ENCFF193ZKP/@@download/ENCFF193ZKP.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF015EOB bed narrowPeak conservative idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF193ZKP, ENCFF212LAR, ENCFF541QIH, ENCFF547MET 340996 ENCODE Processing Pipeline 05e213ce35dedbf7695f881c97d5e65c https://www.encodeproject.org/files/ENCFF015EOB/@@download/ENCFF015EOB.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF130HOV bigWig signal p-value ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF906LVL 325652158 ENCODE Processing Pipeline 7ed31f0c17358192f98835205ca13852 https://www.encodeproject.org/files/ENCFF130HOV/@@download/ENCFF130HOV.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF587NFU bigWig fold change over control ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF906LVL, ENCFF956XJP 501626569 ENCODE Processing Pipeline cfa85ae048863c3b9c259888c540c6b9 https://www.encodeproject.org/files/ENCFF587NFU/@@download/ENCFF587NFU.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF801VPE bigBed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF193ZKP 11049384 ENCODE Processing Pipeline 22c3937f16c91b25b56cd340a39866d8 https://www.encodeproject.org/files/ENCFF801VPE/@@download/ENCFF801VPE.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF568LBX bigBed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF212LAR 11249188 ENCODE Processing Pipeline ebbccbd6dd86ba5a8cdc4b3f3c58105b https://www.encodeproject.org/files/ENCFF568LBX/@@download/ENCFF568LBX.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF074BXT bigWig signal p-value ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF906LVL, ENCFF956XJP 313190240 ENCODE Processing Pipeline 42b88f373f5c5fdbc282fc28ccdae876 https://www.encodeproject.org/files/ENCFF074BXT/@@download/ENCFF074BXT.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF331MUQ bigWig fold change over control ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF906LVL 309590854 ENCODE Processing Pipeline 84fcb565320d36f48b3e798ae411bf8b https://www.encodeproject.org/files/ENCFF331MUQ/@@download/ENCFF331MUQ.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF691LQN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015EOB 894832 ENCODE Processing Pipeline 0a5bee1a83e62f4b69d2da4d6968b05c https://www.encodeproject.org/files/ENCFF691LQN/@@download/ENCFF691LQN.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF950CJS bed narrowPeak optimal idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF193ZKP, ENCFF212LAR, ENCFF541QIH, ENCFF547MET 382232 ENCODE Processing Pipeline 4365e229fa9904fa8d0b9c6812ea275c https://www.encodeproject.org/files/ENCFF950CJS/@@download/ENCFF950CJS.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF239XXP bigWig fold change over control ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF956XJP 281252529 ENCODE Processing Pipeline b86f110f1470b57b796e198ed491fcfe https://www.encodeproject.org/files/ENCFF239XXP/@@download/ENCFF239XXP.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF541QIH bed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF906LVL 7156628 ENCODE Processing Pipeline 31a924bde9dc83272575d65d60bbca85 https://www.encodeproject.org/files/ENCFF541QIH/@@download/ENCFF541QIH.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF212LAR bed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF906LVL, ENCFF956XJP 7293824 ENCODE Processing Pipeline ccf118321468dfd990d7c7d5bd31e856 https://www.encodeproject.org/files/ENCFF212LAR/@@download/ENCFF212LAR.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF122TYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF950CJS 981270 ENCODE Processing Pipeline d7124d48a428c3c6397b54a6e9384888 https://www.encodeproject.org/files/ENCFF122TYQ/@@download/ENCFF122TYQ.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001NWX bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NXH 438907422 Michael Snyder, Stanford 808ed36eb0c7be2f3ecf9ec6895f9e65 https://www.encodeproject.org/files/ENCFF001NWX/@@download/ENCFF001NWX.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NWZ bigBed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJY 1351713 Michael Snyder, Stanford 36f3f93e0f524af8fef1c9f75bda0d92 https://www.encodeproject.org/files/ENCFF001NWZ/@@download/ENCFF001NWZ.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NXC bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NXM 508667156 Michael Snyder, Stanford cb7bcb9294a20c8f7ddce95d79cce434 https://www.encodeproject.org/files/ENCFF001NXC/@@download/ENCFF001NXC.bam mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NXF bigWig signal ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWX, ENCFF001NXC 348529907 Michael Snyder, Stanford 8e7d0dd97c1ff66e2420613346e2b474 https://www.encodeproject.org/files/ENCFF001NXF/@@download/ENCFF001NXF.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NXH fastq reads ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 858689441 Michael Snyder, Stanford 385d7609c8d1d408b527788dd1923f63 https://www.encodeproject.org/files/ENCFF001NXH/@@download/ENCFF001NXH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NXM fastq reads ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1063047092 Michael Snyder, Stanford 194e6ba808b821b58a733bf1919b6bff https://www.encodeproject.org/files/ENCFF001NXM/@@download/ENCFF001NXM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001YJY bed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWX, ENCFF001NXC 564681 Michael Snyder, Stanford 7310e08cff2d19e3881a8413463c9b9c https://www.encodeproject.org/files/ENCFF001YJY/@@download/ENCFF001YJY.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF062DXL bam unfiltered alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NXM, ENCFF018NEO 1214724652 ENCODE Processing Pipeline f3dfcfb20548c56557971fc8dab38afc https://www.encodeproject.org/files/ENCFF062DXL/@@download/ENCFF062DXL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF574JIG bam unfiltered alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NXH, ENCFF018NEO 1015604756 ENCODE Processing Pipeline 3d6f3dd47c4b08c0784d06ab751a182d https://www.encodeproject.org/files/ENCFF574JIG/@@download/ENCFF574JIG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF519PSU bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NXH, ENCFF018NEO 664293173 ENCODE Processing Pipeline a8835cbd7ee728bf48c5a1a6577973cd https://www.encodeproject.org/files/ENCFF519PSU/@@download/ENCFF519PSU.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF786RTQ bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NXM, ENCFF018NEO 772677950 ENCODE Processing Pipeline 36232cfe11097e844d76e0eb563c7bc8 https://www.encodeproject.org/files/ENCFF786RTQ/@@download/ENCFF786RTQ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF391BRG bigWig signal p-value ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF519PSU, ENCFF786RTQ 287249889 ENCODE Processing Pipeline 44b6197b3e31ea53c09652dd89ffcf3b https://www.encodeproject.org/files/ENCFF391BRG/@@download/ENCFF391BRG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF246EZG bed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF519PSU, ENCFF786RTQ 6185724 ENCODE Processing Pipeline 6931119bed865f096a1e9523571a6ce7 https://www.encodeproject.org/files/ENCFF246EZG/@@download/ENCFF246EZG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF663WMT bigWig fold change over control ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF786RTQ 321880450 ENCODE Processing Pipeline 547d6f34e9e70237a14553ef02f6338d https://www.encodeproject.org/files/ENCFF663WMT/@@download/ENCFF663WMT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF168AXR bigWig signal p-value ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF519PSU 287776415 ENCODE Processing Pipeline 161f925be96451bfff96269c1def9771 https://www.encodeproject.org/files/ENCFF168AXR/@@download/ENCFF168AXR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF350HYX bigWig fold change over control ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF519PSU 289823736 ENCODE Processing Pipeline a1895631d927fd3121619421d33e6085 https://www.encodeproject.org/files/ENCFF350HYX/@@download/ENCFF350HYX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF266YOT bigWig fold change over control ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF519PSU, ENCFF786RTQ 520110606 ENCODE Processing Pipeline fd3bc9a1edfd4ed34e629d005b5a31a1 https://www.encodeproject.org/files/ENCFF266YOT/@@download/ENCFF266YOT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF515QSC bigWig signal p-value ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF786RTQ 297790068 ENCODE Processing Pipeline fddf16967164c2990545c4a2cee6f79b https://www.encodeproject.org/files/ENCFF515QSC/@@download/ENCFF515QSC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF359VYL bed narrowPeak conservative idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF246EZG, ENCFF304STF, ENCFF472IDT, ENCFF547MET 692140 ENCODE Processing Pipeline 9f906764d62ad579e019c3990aa0853e https://www.encodeproject.org/files/ENCFF359VYL/@@download/ENCFF359VYL.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF700YID bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF359VYL 1295622 ENCODE Processing Pipeline f5aa8181fccbcf29ac2b0e77584a3f1d https://www.encodeproject.org/files/ENCFF700YID/@@download/ENCFF700YID.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF304STF bed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF519PSU 5308863 ENCODE Processing Pipeline 83cf9079db570070a3917ae273311240 https://www.encodeproject.org/files/ENCFF304STF/@@download/ENCFF304STF.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF472IDT bed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF786RTQ 5449832 ENCODE Processing Pipeline 4ff026b5ea2688ed3883f9278053bafa https://www.encodeproject.org/files/ENCFF472IDT/@@download/ENCFF472IDT.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF314GDU bigBed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF304STF 12809034 ENCODE Processing Pipeline 499b64ac6b3ac530587868d242a816d2 https://www.encodeproject.org/files/ENCFF314GDU/@@download/ENCFF314GDU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF666ZLX bigBed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF472IDT 12868691 ENCODE Processing Pipeline c7ec8fc94539d34f7b3666e237a9bd2c https://www.encodeproject.org/files/ENCFF666ZLX/@@download/ENCFF666ZLX.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF227EPU bigBed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF246EZG 13221850 ENCODE Processing Pipeline 957f7f5d69d1e6251738afe31bb98488 https://www.encodeproject.org/files/ENCFF227EPU/@@download/ENCFF227EPU.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF375GXQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF246EZG, ENCFF304STF, ENCFF472IDT, ENCFF547MET 768067 ENCODE Processing Pipeline 9ba1154a14e969ac2d6f2c90cf2a5013 https://www.encodeproject.org/files/ENCFF375GXQ/@@download/ENCFF375GXQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF057AZA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF375GXQ 1407097 ENCODE Processing Pipeline aa0b27f3e456a8b7b934ac1f027289f1 https://www.encodeproject.org/files/ENCFF057AZA/@@download/ENCFF057AZA.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001NPX bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NQP 288590652 Michael Snyder, Stanford 5a0ddb376a99c9fc72c054adb25268b0 https://www.encodeproject.org/files/ENCFF001NPX/@@download/ENCFF001NPX.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NPY bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NQQ 295544615 Michael Snyder, Stanford 63bdae29367f9c40ae8c48300aab94d5 https://www.encodeproject.org/files/ENCFF001NPY/@@download/ENCFF001NPY.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NPZ bigBed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJE 438950 Michael Snyder, Stanford 51267977e2d87cef034e4e72482c94a7 https://www.encodeproject.org/files/ENCFF001NPZ/@@download/ENCFF001NPZ.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NQB bigWig signal ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPX, ENCFF001NPY 244000867 Michael Snyder, Stanford ab42c556cf689c0ef471d19086b9cba8 https://www.encodeproject.org/files/ENCFF001NQB/@@download/ENCFF001NQB.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NQP fastq reads ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1005318875 Michael Snyder, Stanford 03a3d5e2998fde6495967e9e7b800c38 https://www.encodeproject.org/files/ENCFF001NQP/@@download/ENCFF001NQP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001NQQ fastq reads ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1107674500 Michael Snyder, Stanford 2500b9ce365596e7a8f4c32ef609594a https://www.encodeproject.org/files/ENCFF001NQQ/@@download/ENCFF001NQQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001YJE bed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPX, ENCFF001NPY 148006 Michael Snyder, Stanford d44b93b7085fb025d2eba5e00bb51743 https://www.encodeproject.org/files/ENCFF001YJE/@@download/ENCFF001YJE.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF049TYL bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NQQ, ENCFF018NEO 654147597 ENCODE Processing Pipeline eccd2ee851894adc26cda5975b3f2f39 https://www.encodeproject.org/files/ENCFF049TYL/@@download/ENCFF049TYL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF462QQJ bam unfiltered alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NQQ, ENCFF018NEO 1243721865 ENCODE Processing Pipeline 4e2548ff518550abb416420c77a94f26 https://www.encodeproject.org/files/ENCFF462QQJ/@@download/ENCFF462QQJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF869RHU bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NQP, ENCFF018NEO 522033050 ENCODE Processing Pipeline 4b3c60033a201b96a3d22898cfc652f1 https://www.encodeproject.org/files/ENCFF869RHU/@@download/ENCFF869RHU.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF176BCF bam unfiltered alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NQP, ENCFF018NEO 1110335569 ENCODE Processing Pipeline 9821e3199ea5b61836ab83b6e6a652c5 https://www.encodeproject.org/files/ENCFF176BCF/@@download/ENCFF176BCF.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF606UFT bigWig signal p-value ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF049TYL, ENCFF171OVT 227112606 ENCODE Processing Pipeline 035f21153fc1c0631f46ad6701fac704 https://www.encodeproject.org/files/ENCFF606UFT/@@download/ENCFF606UFT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF484PGX bigWig signal p-value ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF869RHU 219641491 ENCODE Processing Pipeline 819477cbf601b2ba59c67b3c0b6aa485 https://www.encodeproject.org/files/ENCFF484PGX/@@download/ENCFF484PGX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF363WUG bed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF869RHU 5329985 ENCODE Processing Pipeline b046f970c3e60e5dd352904d445eea0f https://www.encodeproject.org/files/ENCFF363WUG/@@download/ENCFF363WUG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF514BIL bigWig fold change over control ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF869RHU 213264790 ENCODE Processing Pipeline 1ed51b235d647d6c18f213f1badaba0e https://www.encodeproject.org/files/ENCFF514BIL/@@download/ENCFF514BIL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF388ZJX bigWig fold change over control ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF049TYL, ENCFF171OVT 251501356 ENCODE Processing Pipeline 4df158f084e431a12128396ac24e3224 https://www.encodeproject.org/files/ENCFF388ZJX/@@download/ENCFF388ZJX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF112ZPS bigBed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF363WUG 12652229 ENCODE Processing Pipeline c36e30031609b79a4836e5d8f11a9619 https://www.encodeproject.org/files/ENCFF112ZPS/@@download/ENCFF112ZPS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF573INC bed narrowPeak optimal idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF139JHS, ENCFF363WUG, ENCFF509VJZ, ENCFF547MET 521274 ENCODE Processing Pipeline 4dbf87184df644fcaccf4598ad735e97 https://www.encodeproject.org/files/ENCFF573INC/@@download/ENCFF573INC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF139JHS bed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF049TYL, ENCFF171OVT 5545218 ENCODE Processing Pipeline bf3fb15a0139dae82162fc7c22232e84 https://www.encodeproject.org/files/ENCFF139JHS/@@download/ENCFF139JHS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF403CFT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF591LSO 1077988 ENCODE Processing Pipeline 31fa502cdfa90b55640fb821ed1d6d66 https://www.encodeproject.org/files/ENCFF403CFT/@@download/ENCFF403CFT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF698GQB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF573INC 1106819 ENCODE Processing Pipeline bb362825b8c7e01c0a09e56550e21410 https://www.encodeproject.org/files/ENCFF698GQB/@@download/ENCFF698GQB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF867KLT bigWig signal p-value ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF049TYL, ENCFF171OVT, ENCFF869RHU 308052205 ENCODE Processing Pipeline e9c79adca9df0504164a9e99f93d0054 https://www.encodeproject.org/files/ENCFF867KLT/@@download/ENCFF867KLT.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF509VJZ bed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF049TYL, ENCFF171OVT, ENCFF869RHU 6094140 ENCODE Processing Pipeline db858b1846f1b0a3eb79b2f5c96c2e8f https://www.encodeproject.org/files/ENCFF509VJZ/@@download/ENCFF509VJZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF998KIS bigWig fold change over control ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF049TYL, ENCFF171OVT, ENCFF869RHU 387662016 ENCODE Processing Pipeline d0bd1d1e5e044aa1c371ea4e3792a6ec https://www.encodeproject.org/files/ENCFF998KIS/@@download/ENCFF998KIS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF410DMO bigBed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF139JHS 12788193 ENCODE Processing Pipeline 4aba957ab20833e14936bb7f7b849db0 https://www.encodeproject.org/files/ENCFF410DMO/@@download/ENCFF410DMO.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF183XKE bigBed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF509VJZ 12899122 ENCODE Processing Pipeline 507e87b1ecefec77b06bbf19c84b6df6 https://www.encodeproject.org/files/ENCFF183XKE/@@download/ENCFF183XKE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF591LSO bed narrowPeak conservative idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF139JHS, ENCFF363WUG, ENCFF509VJZ, ENCFF547MET 505961 ENCODE Processing Pipeline 1e6dfccb384482e03a97e0779db4ca4d https://www.encodeproject.org/files/ENCFF591LSO/@@download/ENCFF591LSO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001MLC bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MLF 712711351 Ross Hardison, PennState 754bc2adc51fec6a7228d683c8f6cfbe https://www.encodeproject.org/files/ENCFF001MLC/@@download/ENCFF001MLC.bam mm9 archived low read length, low read depth, inconsistent platforms ENCFF001MLD bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MLG 950918917 Ross Hardison, PennState a61dddd59b2e8daa7f7b160c492bb689 https://www.encodeproject.org/files/ENCFF001MLD/@@download/ENCFF001MLD.bam mm9 archived low read length, low read depth, inconsistent platforms ENCFF001MLE bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEH 718435 Ross Hardison, PennState acb6168aeb3e491d98925cc5d2c8e2fe https://www.encodeproject.org/files/ENCFF001MLE/@@download/ENCFF001MLE.bigBed mm9 archived low read length, low read depth, inconsistent platforms ENCFF001MLF fastq reads ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 607480699 Ross Hardison, PennState 13cb55536563e2f404ef8356ca31096c https://www.encodeproject.org/files/ENCFF001MLF/@@download/ENCFF001MLF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLS/ released low read length, low read depth, inconsistent platforms ENCFF001MLG fastq reads ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 806190305 Ross Hardison, PennState cb106f71623b64b241c3bf8647d34d52 https://www.encodeproject.org/files/ENCFF001MLG/@@download/ENCFF001MLG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLY/ released low read length, low read depth, inconsistent control read length, inconsistent platforms ENCFF001MLH bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEI 529031 Ross Hardison, PennState 2a0c6497186dcc759975019f4d95010d https://www.encodeproject.org/files/ENCFF001MLH/@@download/ENCFF001MLH.bigBed mm9 archived low read length, low read depth, inconsistent platforms ENCFF001MLI bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEJ 622530 Ross Hardison, PennState f28a4f157e773ceb1ddcbe0f6fa359f5 https://www.encodeproject.org/files/ENCFF001MLI/@@download/ENCFF001MLI.bigBed mm9 archived low read length, low read depth, inconsistent platforms ENCFF001MLJ bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2734187727 Ross Hardison, PennState 677d897c5951a513e79af200b3c4dbb9 https://www.encodeproject.org/files/ENCFF001MLJ/@@download/ENCFF001MLJ.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing derived_from ENCFF001MLL bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3350621395 Ross Hardison, PennState af9c3b2482eee936cb314cf7ff0317ac https://www.encodeproject.org/files/ENCFF001MLL/@@download/ENCFF001MLL.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing derived_from ENCFF001MLN bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 4168038529 Ross Hardison, PennState f8ab794394be26e8a5a6c8ef656110d4 https://www.encodeproject.org/files/ENCFF001MLN/@@download/ENCFF001MLN.bigWig mm9 archived low read length, low read depth, inconsistent platforms missing derived_from ENCFF001YEH bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 459472 Ross Hardison, PennState b660915c9181423a917523b5b503bbb7 https://www.encodeproject.org/files/ENCFF001YEH/@@download/ENCFF001YEH.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing derived_from ENCFF001YEI bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 325034 Ross Hardison, PennState 507e3ea67e41cf2f31f49dd86dc33fd6 https://www.encodeproject.org/files/ENCFF001YEI/@@download/ENCFF001YEI.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing derived_from ENCFF001YEJ bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 368527 Ross Hardison, PennState e9256686dfab3c9b4969b2969c866915 https://www.encodeproject.org/files/ENCFF001YEJ/@@download/ENCFF001YEJ.bed.gz mm9 archived low read length, low read depth, inconsistent platforms missing derived_from ENCFF572OOM bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 721210553 ENCODE Processing Pipeline 48caea704afd9d07d65699d70cfa16b7 https://www.encodeproject.org/files/ENCFF572OOM/@@download/ENCFF572OOM.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF647VRB bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 542081189 ENCODE Processing Pipeline 1b563fa83cf177b0aa0cb86f4fa85be1 https://www.encodeproject.org/files/ENCFF647VRB/@@download/ENCFF647VRB.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF868BBI bam unfiltered alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 751673017 ENCODE Processing Pipeline e639111bf5ba4d6317c5d7658e0248db https://www.encodeproject.org/files/ENCFF868BBI/@@download/ENCFF868BBI.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF263RYZ bam unfiltered alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 1019973809 ENCODE Processing Pipeline 9af021216b044a93dc01897a553ed6d2 https://www.encodeproject.org/files/ENCFF263RYZ/@@download/ENCFF263RYZ.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF631JAQ bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 691366940 ENCODE Processing Pipeline 6d283ba4053718b61fa7c810d9092c9f https://www.encodeproject.org/files/ENCFF631JAQ/@@download/ENCFF631JAQ.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF995TTU bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 819207950 ENCODE Processing Pipeline d7b1d9c8cfaf4e50e15003b675c43066 https://www.encodeproject.org/files/ENCFF995TTU/@@download/ENCFF995TTU.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF923OBH bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 881440500 ENCODE Processing Pipeline 0b146a2cc2ce851e216837971301cb95 https://www.encodeproject.org/files/ENCFF923OBH/@@download/ENCFF923OBH.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF980OLE bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 692018007 ENCODE Processing Pipeline 41ce349593596cca71049029dd73bf42 https://www.encodeproject.org/files/ENCFF980OLE/@@download/ENCFF980OLE.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF504OHG bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 508922016 ENCODE Processing Pipeline 6fd180e72114944b71776f7449bcdc69 https://www.encodeproject.org/files/ENCFF504OHG/@@download/ENCFF504OHG.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF844EOO bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 914199303 ENCODE Processing Pipeline 28df81cd95383ff7b16f6fa38c5e51c0 https://www.encodeproject.org/files/ENCFF844EOO/@@download/ENCFF844EOO.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF173SFG bed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 5985352 ENCODE Processing Pipeline 36ab5b133fba34e67401c4c1017148e1 https://www.encodeproject.org/files/ENCFF173SFG/@@download/ENCFF173SFG.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF800OVO bigBed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF210RNE 13641968 ENCODE Processing Pipeline efd69a49353d077ae78d26d3ed1c77ff https://www.encodeproject.org/files/ENCFF800OVO/@@download/ENCFF800OVO.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF844FUF bed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 5709286 ENCODE Processing Pipeline 052d661edef6cfcab1526bd751eab798 https://www.encodeproject.org/files/ENCFF844FUF/@@download/ENCFF844FUF.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF743VIT bed narrowPeak conservative idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF173SFG, ENCFF210RNE, ENCFF547MET, ENCFF844FUF 431875 ENCODE Processing Pipeline 6963d12936de0a9d174aee666c5ed791 https://www.encodeproject.org/files/ENCFF743VIT/@@download/ENCFF743VIT.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF112IBI bed narrowPeak optimal idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF173SFG, ENCFF210RNE, ENCFF547MET, ENCFF844FUF 433324 ENCODE Processing Pipeline c6fb1e9f83feb30317b951668b09b110 https://www.encodeproject.org/files/ENCFF112IBI/@@download/ENCFF112IBI.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF685XHR bigBed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF173SFG 13267694 ENCODE Processing Pipeline 57f3a60b2184cf28fdf7b260b171abd4 https://www.encodeproject.org/files/ENCFF685XHR/@@download/ENCFF685XHR.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF984EPF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF112IBI 772031 ENCODE Processing Pipeline efabaf3bf3c980cdc9cb445f91d22171 https://www.encodeproject.org/files/ENCFF984EPF/@@download/ENCFF984EPF.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF210RNE bed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 6483099 ENCODE Processing Pipeline 8cf802e0d685ac8710d3af9a7fa54a7d https://www.encodeproject.org/files/ENCFF210RNE/@@download/ENCFF210RNE.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF455CGR bigBed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF844FUF 11336528 ENCODE Processing Pipeline 301177ff56aca04c4acd1b681556c172 https://www.encodeproject.org/files/ENCFF455CGR/@@download/ENCFF455CGR.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF615ZDE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF743VIT 768536 ENCODE Processing Pipeline c8011e9ecdc6247d6751a8285f11c02e https://www.encodeproject.org/files/ENCFF615ZDE/@@download/ENCFF615ZDE.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF001NOZ bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NPB 356696417 Michael Snyder, Stanford ed92eef6030b264fb99df9d766711c36 https://www.encodeproject.org/files/ENCFF001NOZ/@@download/ENCFF001NOZ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NPA bigBed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJA 104783 Michael Snyder, Stanford 464c95f204c398835ddefe4424664355 https://www.encodeproject.org/files/ENCFF001NPA/@@download/ENCFF001NPA.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NPB fastq reads ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 764843245 Michael Snyder, Stanford 902e7f1b9aea32b694d088e304ffbbe4 https://www.encodeproject.org/files/ENCFF001NPB/@@download/ENCFF001NPB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NPD fastq reads ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 888145478 Michael Snyder, Stanford e1040dcdbdd306a5be3c414bd9de63e9 https://www.encodeproject.org/files/ENCFF001NPD/@@download/ENCFF001NPD.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NPF bigWig signal ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOZ, ENCFF001NPG 137712215 Michael Snyder, Stanford ebccbc22596cd74ef212a8db00ee335c https://www.encodeproject.org/files/ENCFF001NPF/@@download/ENCFF001NPF.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NPG bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NPD 442106882 Michael Snyder, Stanford 18f8a9c7618f2dd91790b33fe99ff668 https://www.encodeproject.org/files/ENCFF001NPG/@@download/ENCFF001NPG.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YJA bed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOZ, ENCFF001NPG 17168 Michael Snyder, Stanford bafc4389231ea3d1e2879eb648f34dc5 https://www.encodeproject.org/files/ENCFF001YJA/@@download/ENCFF001YJA.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF092SQN bam unfiltered alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NPB, ENCFF018NEO 830442862 ENCODE Processing Pipeline ec40f543294de993445374a6b7b2590b https://www.encodeproject.org/files/ENCFF092SQN/@@download/ENCFF092SQN.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF801BQB bam unfiltered alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NPD, ENCFF018NEO 952084117 ENCODE Processing Pipeline a8f05f8a63cf7014fcb074476bb7f7cc https://www.encodeproject.org/files/ENCFF801BQB/@@download/ENCFF801BQB.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF788RAA bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NPB, ENCFF018NEO 503106824 ENCODE Processing Pipeline 9aba8664ae071273f4cb4f7f4b771c94 https://www.encodeproject.org/files/ENCFF788RAA/@@download/ENCFF788RAA.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF084ZDT bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NPD, ENCFF018NEO 590045056 ENCODE Processing Pipeline 12775a58f71c6b87ae9048364d93d03a https://www.encodeproject.org/files/ENCFF084ZDT/@@download/ENCFF084ZDT.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF479UDZ bigWig signal p-value ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF084ZDT, ENCFF171OVT 338348371 ENCODE Processing Pipeline ee1d4ebf21afbae071e629d1333a5792 https://www.encodeproject.org/files/ENCFF479UDZ/@@download/ENCFF479UDZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF498FCD bigWig fold change over control ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF084ZDT, ENCFF171OVT, ENCFF788RAA 437015423 ENCODE Processing Pipeline adad23d9c6f2a2210587cf1eafeb4ea1 https://www.encodeproject.org/files/ENCFF498FCD/@@download/ENCFF498FCD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF195SXV bed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF084ZDT, ENCFF171OVT 5732018 ENCODE Processing Pipeline 8df2416e07ec4f8e982e226f7b2a5511 https://www.encodeproject.org/files/ENCFF195SXV/@@download/ENCFF195SXV.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF609MSQ bigBed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF195SXV 12738180 ENCODE Processing Pipeline 6507a6797f4aeff1a352c094c9a8a747 https://www.encodeproject.org/files/ENCFF609MSQ/@@download/ENCFF609MSQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF573ZVG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF637JIJ 611861 ENCODE Processing Pipeline d3819960813246ecbe48aef280b8ecdd https://www.encodeproject.org/files/ENCFF573ZVG/@@download/ENCFF573ZVG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF675RRX bigWig signal p-value ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF788RAA 291567338 ENCODE Processing Pipeline 3856ea6ee9aad9c7f357957fe885739e https://www.encodeproject.org/files/ENCFF675RRX/@@download/ENCFF675RRX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF477YIX bigWig fold change over control ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF788RAA 246816103 ENCODE Processing Pipeline c070806b4fa69d8114f3c46e52da2de7 https://www.encodeproject.org/files/ENCFF477YIX/@@download/ENCFF477YIX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF699TBC bed narrowPeak conservative idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF133DYG, ENCFF195SXV, ENCFF263TBO, ENCFF547MET 226229 ENCODE Processing Pipeline 75afe455a0b2e0ca47d8249d0eab2177 https://www.encodeproject.org/files/ENCFF699TBC/@@download/ENCFF699TBC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF536GMW bigWig fold change over control ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF084ZDT, ENCFF171OVT 271550262 ENCODE Processing Pipeline 0b1091a80a74e01e01515ebf2c379129 https://www.encodeproject.org/files/ENCFF536GMW/@@download/ENCFF536GMW.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF251KUC bigBed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF133DYG 12655701 ENCODE Processing Pipeline e899f32f9e9ac67bae1e6336d833ae6c https://www.encodeproject.org/files/ENCFF251KUC/@@download/ENCFF251KUC.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF938EWD bigWig signal p-value ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF084ZDT, ENCFF171OVT, ENCFF788RAA 310282877 ENCODE Processing Pipeline a807b735b87b80fa61cda0df7d1863d6 https://www.encodeproject.org/files/ENCFF938EWD/@@download/ENCFF938EWD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF263TBO bed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF788RAA 5956559 ENCODE Processing Pipeline b9b9574f4404e22c67237e3abba7f07e https://www.encodeproject.org/files/ENCFF263TBO/@@download/ENCFF263TBO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF133DYG bed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF084ZDT, ENCFF171OVT, ENCFF788RAA 6589913 ENCODE Processing Pipeline 266bf1f4c23c82c5459199e235dc69f1 https://www.encodeproject.org/files/ENCFF133DYG/@@download/ENCFF133DYG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF731LNT bigBed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF263TBO 12545701 ENCODE Processing Pipeline d0eb492cec75885c1138e2edf3b96552 https://www.encodeproject.org/files/ENCFF731LNT/@@download/ENCFF731LNT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF184KFH bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF699TBC 595351 ENCODE Processing Pipeline 67e4aea48d3f0456b86fb371dc0adbe3 https://www.encodeproject.org/files/ENCFF184KFH/@@download/ENCFF184KFH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF637JIJ bed narrowPeak optimal idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF133DYG, ENCFF195SXV, ENCFF263TBO, ENCFF547MET 233724 ENCODE Processing Pipeline 8546e40e938b6db51319cb4b7f2dcbc3 https://www.encodeproject.org/files/ENCFF637JIJ/@@download/ENCFF637JIJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBM bigBed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKM 1139812 Michael Snyder, Stanford 468e3c48ab50640d2eaab90129b15058 https://www.encodeproject.org/files/ENCFF001OBM/@@download/ENCFF001OBM.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBN fastq reads ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 953129401 Michael Snyder, Stanford d699cf94e6f73821a224315e846bffa4 https://www.encodeproject.org/files/ENCFF001OBN/@@download/ENCFF001OBN.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBP fastq reads ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 882995364 Michael Snyder, Stanford f139950cc385e8ac957c82cbd2b98b55 https://www.encodeproject.org/files/ENCFF001OBP/@@download/ENCFF001OBP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBR bigWig signal ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OBS, ENCFF001OBT 207783644 Michael Snyder, Stanford d3ffd7948b84632c66be161f52f30eb2 https://www.encodeproject.org/files/ENCFF001OBR/@@download/ENCFF001OBR.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBS bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001OBN 468251501 Michael Snyder, Stanford ad1beaeb8e135f3d9cb4a5366a938930 https://www.encodeproject.org/files/ENCFF001OBS/@@download/ENCFF001OBS.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001OBT bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OBP 458215389 Michael Snyder, Stanford 43ce19d656142e430edcd649dd9f1c26 https://www.encodeproject.org/files/ENCFF001OBT/@@download/ENCFF001OBT.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YKM bed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OBS, ENCFF001OBT 426643 Michael Snyder, Stanford 4f9f7a8f8bb921c36e2e1e77362cf7b4 https://www.encodeproject.org/files/ENCFF001YKM/@@download/ENCFF001YKM.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF676TTL bam unfiltered alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBN, ENCFF018NEO 1037766703 ENCODE Processing Pipeline 79ef38453c70753e4a139da68bd02293 https://www.encodeproject.org/files/ENCFF676TTL/@@download/ENCFF676TTL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF842CYQ bam unfiltered alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBP, ENCFF018NEO 952900844 ENCODE Processing Pipeline ce3cfe4fe8ebf5db6dab2bbc3a2ac5bc https://www.encodeproject.org/files/ENCFF842CYQ/@@download/ENCFF842CYQ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF504VVD bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBN, ENCFF018NEO 615637478 ENCODE Processing Pipeline 2decde58005fe65dc00f7181ffd512b7 https://www.encodeproject.org/files/ENCFF504VVD/@@download/ENCFF504VVD.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF730KCK bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBP, ENCFF018NEO 611197160 ENCODE Processing Pipeline 7325815783e39cead9dedee37db26270 https://www.encodeproject.org/files/ENCFF730KCK/@@download/ENCFF730KCK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF271LKG bigWig signal p-value ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF504VVD, ENCFF730KCK 281738528 ENCODE Processing Pipeline a534da7c8002df96ffbf8057ee4b6c23 https://www.encodeproject.org/files/ENCFF271LKG/@@download/ENCFF271LKG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF838GQM bigBed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF439TXC 12960082 ENCODE Processing Pipeline edaa6c68209e112b3f7ea13ff3ddf219 https://www.encodeproject.org/files/ENCFF838GQM/@@download/ENCFF838GQM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF746YDQ bigWig signal p-value ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF504VVD 321392468 ENCODE Processing Pipeline 5620bc1daf754ff0232dfb731e99c246 https://www.encodeproject.org/files/ENCFF746YDQ/@@download/ENCFF746YDQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF802TPK bigWig signal p-value ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF730KCK 288615679 ENCODE Processing Pipeline 1e54fe74030cc07af339190911c9591c https://www.encodeproject.org/files/ENCFF802TPK/@@download/ENCFF802TPK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF631AJE bigWig fold change over control ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF504VVD 281436860 ENCODE Processing Pipeline b243cd0624f9ec306ba8d2b760a84c13 https://www.encodeproject.org/files/ENCFF631AJE/@@download/ENCFF631AJE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF769TLU bigWig fold change over control ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF730KCK 277161395 ENCODE Processing Pipeline 4689938aec6508d535e4e0c2a99bd299 https://www.encodeproject.org/files/ENCFF769TLU/@@download/ENCFF769TLU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF807HIG bigWig fold change over control ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF504VVD, ENCFF730KCK 456641858 ENCODE Processing Pipeline a12c96cc77ff5031805995826aa44e4e https://www.encodeproject.org/files/ENCFF807HIG/@@download/ENCFF807HIG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF257UCC bed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF504VVD 5462700 ENCODE Processing Pipeline 62d1c0ce8f9fc84e45a3ab7d49fb4a75 https://www.encodeproject.org/files/ENCFF257UCC/@@download/ENCFF257UCC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF439TXC bed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF730KCK 5782903 ENCODE Processing Pipeline ad881290137b43b5fc44cce636e35811 https://www.encodeproject.org/files/ENCFF439TXC/@@download/ENCFF439TXC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF511FHB bigBed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF257UCC 12905596 ENCODE Processing Pipeline bfd650bc5c56f3f1af0485fbd90a0b9d https://www.encodeproject.org/files/ENCFF511FHB/@@download/ENCFF511FHB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF013WGP bigBed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF665RZK 13160288 ENCODE Processing Pipeline cb1ee3abf57f0215a2fc1b06cb564cc8 https://www.encodeproject.org/files/ENCFF013WGP/@@download/ENCFF013WGP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF665RZK bed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF504VVD, ENCFF730KCK 6384529 ENCODE Processing Pipeline 4d3cd1470767a80c86947907179db1e8 https://www.encodeproject.org/files/ENCFF665RZK/@@download/ENCFF665RZK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF325FTB bed narrowPeak conservative idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF257UCC, ENCFF439TXC, ENCFF547MET, ENCFF665RZK 604105 ENCODE Processing Pipeline a93df1cee4b15aa2f25684521a7a3db1 https://www.encodeproject.org/files/ENCFF325FTB/@@download/ENCFF325FTB.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF140PVT bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325FTB 1157073 ENCODE Processing Pipeline 4c8894f785cb64700d609bf853ba30bc https://www.encodeproject.org/files/ENCFF140PVT/@@download/ENCFF140PVT.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF611SZM bed narrowPeak optimal idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF257UCC, ENCFF439TXC, ENCFF547MET, ENCFF665RZK 605216 ENCODE Processing Pipeline 04885dbeb322e6acf18ef60d9e78a068 https://www.encodeproject.org/files/ENCFF611SZM/@@download/ENCFF611SZM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF978QUP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF611SZM 1157291 ENCODE Processing Pipeline 4477b72af09ee85aa62422986b0dbaef https://www.encodeproject.org/files/ENCFF978QUP/@@download/ENCFF978QUP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001NOJ bigBed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIY 1105679 Michael Snyder, Stanford 88e711da07224b5eac076d2953ac5743 https://www.encodeproject.org/files/ENCFF001NOJ/@@download/ENCFF001NOJ.bigBed mm9 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001NOK fastq reads ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 756106339 Michael Snyder, Stanford 2c1160b93363252494e830a43d75a2c8 https://www.encodeproject.org/files/ENCFF001NOK/@@download/ENCFF001NOK.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001NOL bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NOK 362997849 Michael Snyder, Stanford fe951813248a3d224f86dafbc18adf26 https://www.encodeproject.org/files/ENCFF001NOL/@@download/ENCFF001NOL.bam mm9 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001NON fastq reads ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1423653479 Michael Snyder, Stanford 9723a6dd2f002b60b5f96be9341ca2b8 https://www.encodeproject.org/files/ENCFF001NON/@@download/ENCFF001NON.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001NOO bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NON 415145074 Michael Snyder, Stanford 0eb0ea3224e8e4a5a02424a80ed64a96 https://www.encodeproject.org/files/ENCFF001NOO/@@download/ENCFF001NOO.bam mm9 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001NOQ bigWig signal ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOL, ENCFF001NOO 133726605 Michael Snyder, Stanford 56eece557e0b75fbc8b6e7839c3597e7 https://www.encodeproject.org/files/ENCFF001NOQ/@@download/ENCFF001NOQ.bigWig mm9 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001YIY bed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOL, ENCFF001NOO 459375 Michael Snyder, Stanford 2bd4b919b30e0feb593af9eb2698834f https://www.encodeproject.org/files/ENCFF001YIY/@@download/ENCFF001YIY.bed.gz mm9 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF070AAM bam unfiltered alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOK, ENCFF018NEO 838988558 ENCODE Processing Pipeline 665b6464c507f67a7cee85b860c45977 https://www.encodeproject.org/files/ENCFF070AAM/@@download/ENCFF070AAM.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF220KIF bam unfiltered alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NON, ENCFF018NEO 1468446867 ENCODE Processing Pipeline 06ab976ba26422ca51c41caed9d477e0 https://www.encodeproject.org/files/ENCFF220KIF/@@download/ENCFF220KIF.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF203OQV bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NON, ENCFF018NEO 660029638 ENCODE Processing Pipeline 914816e14beddad500d2962e04271c98 https://www.encodeproject.org/files/ENCFF203OQV/@@download/ENCFF203OQV.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF530IHQ bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOK, ENCFF018NEO 515801628 ENCODE Processing Pipeline cbbe46b5624d785e233e85d14c0f8290 https://www.encodeproject.org/files/ENCFF530IHQ/@@download/ENCFF530IHQ.bam mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF966JZI bigWig signal p-value ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF203OQV, ENCFF966YUS 411395826 ENCODE Processing Pipeline c2566f7c6f95476dde635487747fec70 https://www.encodeproject.org/files/ENCFF966JZI/@@download/ENCFF966JZI.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF223JDA bigWig signal p-value ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF530IHQ, ENCFF966YUS 388126880 ENCODE Processing Pipeline 826b312ca65f48b5343c88313d3a5aa5 https://www.encodeproject.org/files/ENCFF223JDA/@@download/ENCFF223JDA.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF622XJI bigWig signal p-value ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF203OQV, ENCFF530IHQ, ENCFF966YUS 470841559 ENCODE Processing Pipeline 1c6dc675f3ab06537e45cdc08161a2b2 https://www.encodeproject.org/files/ENCFF622XJI/@@download/ENCFF622XJI.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF865CED bigWig fold change over control ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF530IHQ, ENCFF966YUS 292613779 ENCODE Processing Pipeline f0891de4971c5044511210ab2f22d6bf https://www.encodeproject.org/files/ENCFF865CED/@@download/ENCFF865CED.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF705NWZ bigWig fold change over control ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF203OQV, ENCFF966YUS 333089475 ENCODE Processing Pipeline 713a2cfcea35cb767b0ce2b0664f0c81 https://www.encodeproject.org/files/ENCFF705NWZ/@@download/ENCFF705NWZ.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF643WMY bigWig fold change over control ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF203OQV, ENCFF530IHQ, ENCFF966YUS 500488112 ENCODE Processing Pipeline 7d9526ebc02054af44eeb7e1e382cb14 https://www.encodeproject.org/files/ENCFF643WMY/@@download/ENCFF643WMY.bigWig mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF338BOV bed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF530IHQ, ENCFF966YUS 5317047 ENCODE Processing Pipeline b4ab721e7117c4011d84345050f47a33 https://www.encodeproject.org/files/ENCFF338BOV/@@download/ENCFF338BOV.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF488MCL bigBed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF338BOV 13240798 ENCODE Processing Pipeline 6ed8646bb52198b5aed6cbf78907dcc1 https://www.encodeproject.org/files/ENCFF488MCL/@@download/ENCFF488MCL.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF869DLF bed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF203OQV, ENCFF966YUS 5250036 ENCODE Processing Pipeline fcd5150c368f1641d5a652d7f301d735 https://www.encodeproject.org/files/ENCFF869DLF/@@download/ENCFF869DLF.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF456SWU bed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF203OQV, ENCFF530IHQ, ENCFF966YUS 6100853 ENCODE Processing Pipeline a64f428a552680ef7ca0a77a524dc404 https://www.encodeproject.org/files/ENCFF456SWU/@@download/ENCFF456SWU.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF715TCK bigBed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF869DLF 11048459 ENCODE Processing Pipeline 795dfb61c4dcf0bcf708e0d762008047 https://www.encodeproject.org/files/ENCFF715TCK/@@download/ENCFF715TCK.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF679DTU bigBed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456SWU 13511342 ENCODE Processing Pipeline b5e0b8ad333130d81fc9938e1daa90f5 https://www.encodeproject.org/files/ENCFF679DTU/@@download/ENCFF679DTU.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF960DFA bed narrowPeak conservative idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF338BOV, ENCFF456SWU, ENCFF547MET, ENCFF869DLF 402653 ENCODE Processing Pipeline ff3c208fff26d996b02d612786285fd1 https://www.encodeproject.org/files/ENCFF960DFA/@@download/ENCFF960DFA.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF992UWP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF960DFA 726722 ENCODE Processing Pipeline dc5f29095b12a05b65a7661212a613a0 https://www.encodeproject.org/files/ENCFF992UWP/@@download/ENCFF992UWP.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF255MHA bed narrowPeak optimal idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF338BOV, ENCFF456SWU, ENCFF547MET, ENCFF869DLF 419921 ENCODE Processing Pipeline 5134699728e120b67018ddd72f2ad547 https://www.encodeproject.org/files/ENCFF255MHA/@@download/ENCFF255MHA.bed.gz mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF358QMX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF255MHA 750894 ENCODE Processing Pipeline 543210c0c3acb79ed9f1a3379e79c4e2 https://www.encodeproject.org/files/ENCFF358QMX/@@download/ENCFF358QMX.bigBed mm10 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF938GAS fastq reads ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1869515221 Richard Myers, HAIB 4c697252bab23245ab23f30cfbf01518 SRA:SRR5112038 https://www.encodeproject.org/files/ENCFF938GAS/@@download/ENCFF938GAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF747FRP/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF548JVO fastq reads ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 1093521687 Richard Myers, HAIB 8b49d49f43d8bebb16ed38b91459a1a7 SRA:SRR5112039 https://www.encodeproject.org/files/ENCFF548JVO/@@download/ENCFF548JVO.fastq.gz Illumina HiSeq 2000 /files/ENCFF747FRP/ released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF407JXH bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF548JVO, ENCFF806TVZ 835576488 ENCODE Processing Pipeline c0c7c54a35bb0233a834b65dbdab72c7 https://www.encodeproject.org/files/ENCFF407JXH/@@download/ENCFF407JXH.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF625NKF bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF806TVZ, ENCFF938GAS 1264034379 ENCODE Processing Pipeline 396512a3d1faad77b4f8c51423ddc5e7 https://www.encodeproject.org/files/ENCFF625NKF/@@download/ENCFF625NKF.bam mm10-minimal archived low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF961HJP bam unfiltered alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF938GAS 1947255656 ENCODE Processing Pipeline 0588e504a3f62aa92be52b8fc76d7fca https://www.encodeproject.org/files/ENCFF961HJP/@@download/ENCFF961HJP.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF360FFU bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548JVO 835431405 ENCODE Processing Pipeline 1e724e319d509081e6a1af03cc92de0e https://www.encodeproject.org/files/ENCFF360FFU/@@download/ENCFF360FFU.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF730OUV bam unfiltered alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548JVO 1195297404 ENCODE Processing Pipeline e0827406de3c964c0a731660166fbbdd https://www.encodeproject.org/files/ENCFF730OUV/@@download/ENCFF730OUV.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF541LRE bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF938GAS 1263858982 ENCODE Processing Pipeline 456dba2a36b15d845363c2522d0c85fb https://www.encodeproject.org/files/ENCFF541LRE/@@download/ENCFF541LRE.bam mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF432BKJ bigWig fold change over control ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF541LRE, ENCFF814DMW 522687284 ENCODE Processing Pipeline 8f9dce34fab7bc24a19042810ffc6c89 https://www.encodeproject.org/files/ENCFF432BKJ/@@download/ENCFF432BKJ.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF787PJB bigWig signal p-value ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF360FFU, ENCFF814DMW 416732946 ENCODE Processing Pipeline 5e08d25310f9498c57f764e5a6ded355 https://www.encodeproject.org/files/ENCFF787PJB/@@download/ENCFF787PJB.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF692BEK bigWig signal p-value ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF541LRE, ENCFF814DMW 525790728 ENCODE Processing Pipeline c03288ddd6f354c2c8ac193b0fe961b3 https://www.encodeproject.org/files/ENCFF692BEK/@@download/ENCFF692BEK.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF433IFE bigWig signal p-value ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF360FFU, ENCFF541LRE, ENCFF814DMW 579530895 ENCODE Processing Pipeline 5e23d285990117c66e4f40f563b8f60a https://www.encodeproject.org/files/ENCFF433IFE/@@download/ENCFF433IFE.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF816UKB bigWig fold change over control ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF360FFU, ENCFF814DMW 380318550 ENCODE Processing Pipeline f86a32d4d2f6a4ce1895945dbbb008ce https://www.encodeproject.org/files/ENCFF816UKB/@@download/ENCFF816UKB.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF619GPG bed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF360FFU, ENCFF541LRE, ENCFF814DMW 6130557 ENCODE Processing Pipeline 94e9cb15223788bbf7b93f235985ce2f https://www.encodeproject.org/files/ENCFF619GPG/@@download/ENCFF619GPG.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF251ZXL bigWig fold change over control ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF360FFU, ENCFF541LRE, ENCFF814DMW 742689251 ENCODE Processing Pipeline 88d93812b60ae6e0cd1f8f6890658e25 https://www.encodeproject.org/files/ENCFF251ZXL/@@download/ENCFF251ZXL.bigWig mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF875LZX bed narrowPeak optimal idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF098DOF, ENCFF534RWN, ENCFF547MET, ENCFF619GPG 475161 ENCODE Processing Pipeline aab17bd690e9f6da9619fdce6330b377 https://www.encodeproject.org/files/ENCFF875LZX/@@download/ENCFF875LZX.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF083OYG bigBed narrowPeak optimal idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF875LZX 923823 ENCODE Processing Pipeline d95f6ee43469eadc7409829f18896177 https://www.encodeproject.org/files/ENCFF083OYG/@@download/ENCFF083OYG.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF098DOF bed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF360FFU, ENCFF814DMW 5045806 ENCODE Processing Pipeline e71b51acbfe92fa26f7759f0445306c8 https://www.encodeproject.org/files/ENCFF098DOF/@@download/ENCFF098DOF.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF506TVW bigBed narrowPeak peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF534RWN 13466281 ENCODE Processing Pipeline 213ff81dd1c0afda586043032b342c50 https://www.encodeproject.org/files/ENCFF506TVW/@@download/ENCFF506TVW.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF453RFJ bigBed narrowPeak peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF098DOF 11029870 ENCODE Processing Pipeline c3d42d61027544c53e106cc88a1c5cea https://www.encodeproject.org/files/ENCFF453RFJ/@@download/ENCFF453RFJ.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF534RWN bed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF541LRE, ENCFF814DMW 5707820 ENCODE Processing Pipeline 4083ba1313b4afb1cd3de65242aadeef https://www.encodeproject.org/files/ENCFF534RWN/@@download/ENCFF534RWN.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF303YGS bigBed narrowPeak conservative idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF999KRJ 839668 ENCODE Processing Pipeline ae0c44d79a86e4a7242d8f98ec0759f9 https://www.encodeproject.org/files/ENCFF303YGS/@@download/ENCFF303YGS.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF497OSW bigBed narrowPeak peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF619GPG 13540188 ENCODE Processing Pipeline 34c20618f56b7db53ea74be30dd4c69b https://www.encodeproject.org/files/ENCFF497OSW/@@download/ENCFF497OSW.bigBed mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF999KRJ bed narrowPeak conservative idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF098DOF, ENCFF534RWN, ENCFF547MET, ENCFF619GPG 419678 ENCODE Processing Pipeline cb88b8902ae67a117c3a1080b2201bff https://www.encodeproject.org/files/ENCFF999KRJ/@@download/ENCFF999KRJ.bed.gz mm10 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF671VKD fastq reads ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 1200033178 Richard Myers, HAIB 24fd908cdf923a562145a19996f09203 SRA:SRR5111591 https://www.encodeproject.org/files/ENCFF671VKD/@@download/ENCFF671VKD.fastq.gz Illumina HiSeq 2000 /files/ENCFF172HFY/ released antibody characterized with exemption biological replicates with identical biosample ENCFF682HTS fastq reads ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1094098855 Richard Myers, HAIB 75a7dc10b54e80bb12b6cfe54656c72b SRA:SRR5111590 https://www.encodeproject.org/files/ENCFF682HTS/@@download/ENCFF682HTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF329PLP/ released antibody characterized with exemption biological replicates with identical biosample ENCFF562ESN bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF671VKD, ENCFF806TVZ 1000695237 ENCODE Processing Pipeline d279288f7f4b37aad3052b623321ff7b https://www.encodeproject.org/files/ENCFF562ESN/@@download/ENCFF562ESN.bam mm10-minimal archived antibody characterized with exemption biological replicates with identical biosample ENCFF645XHV bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF682HTS, ENCFF806TVZ 913030596 ENCODE Processing Pipeline 00efa81f30cca3d7497d73dbc3a362bf https://www.encodeproject.org/files/ENCFF645XHV/@@download/ENCFF645XHV.bam mm10-minimal archived antibody characterized with exemption biological replicates with identical biosample ENCFF157PZF bam unfiltered alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF671VKD 1329016858 ENCODE Processing Pipeline de4f8fed1b6c8ff2dbb3119b9fd1c7a0 https://www.encodeproject.org/files/ENCFF157PZF/@@download/ENCFF157PZF.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF960WVG bam unfiltered alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF682HTS 1212914464 ENCODE Processing Pipeline 3d0baf4619cf8ac640d7a1266e7218ff https://www.encodeproject.org/files/ENCFF960WVG/@@download/ENCFF960WVG.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF555JZF bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF682HTS 912899218 ENCODE Processing Pipeline df09e1404dd1ce3a4c0b40dbd7a5778c https://www.encodeproject.org/files/ENCFF555JZF/@@download/ENCFF555JZF.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF117NUU bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF671VKD 1000565370 ENCODE Processing Pipeline 75f917563cd9668f886f79fd94372d67 https://www.encodeproject.org/files/ENCFF117NUU/@@download/ENCFF117NUU.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF367QRS bigWig signal p-value ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF132KBH, ENCFF555JZF 459290049 ENCODE Processing Pipeline 04a456ceeea7988395cbeca6d09ced63 https://www.encodeproject.org/files/ENCFF367QRS/@@download/ENCFF367QRS.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF224EQW bigWig signal p-value ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF117NUU, ENCFF132KBH, ENCFF604KPS 638325637 ENCODE Processing Pipeline 43127cdec1a617a34ee320d79e970612 https://www.encodeproject.org/files/ENCFF224EQW/@@download/ENCFF224EQW.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF749SKR bigWig fold change over control ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF132KBH, ENCFF555JZF 446628985 ENCODE Processing Pipeline 1f1118b1e7c35e822f6031d7228704b9 https://www.encodeproject.org/files/ENCFF749SKR/@@download/ENCFF749SKR.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF132XVI bigWig fold change over control ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF117NUU, ENCFF132KBH, ENCFF604KPS 618160330 ENCODE Processing Pipeline db65e9a993dc688bbbfca26a85ff4500 https://www.encodeproject.org/files/ENCFF132XVI/@@download/ENCFF132XVI.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF625DQU bigWig signal p-value ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF117NUU, ENCFF132KBH, ENCFF555JZF, ENCFF604KPS 626739413 ENCODE Processing Pipeline 67cb96dca907a9b021a2d56973baa7a8 https://www.encodeproject.org/files/ENCFF625DQU/@@download/ENCFF625DQU.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF665UTM bigWig fold change over control ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF117NUU, ENCFF132KBH, ENCFF555JZF, ENCFF604KPS 866060314 ENCODE Processing Pipeline 38ff60b1687be9e44daaa3140f02446b https://www.encodeproject.org/files/ENCFF665UTM/@@download/ENCFF665UTM.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF487STG bed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF132KBH, ENCFF555JZF 5885251 ENCODE Processing Pipeline ba1cfbd4776880d28287e30471f3b084 https://www.encodeproject.org/files/ENCFF487STG/@@download/ENCFF487STG.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF477NPU bed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF117NUU, ENCFF132KBH, ENCFF604KPS 6308990 ENCODE Processing Pipeline 217089477c7b47ea32df185d967e16ca https://www.encodeproject.org/files/ENCFF477NPU/@@download/ENCFF477NPU.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF425IFM bigBed narrowPeak peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF487STG 13336343 ENCODE Processing Pipeline f704a94030db399d42c3d3578bf79c69 https://www.encodeproject.org/files/ENCFF425IFM/@@download/ENCFF425IFM.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF687GFY bed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF117NUU, ENCFF132KBH, ENCFF555JZF, ENCFF604KPS 7059194 ENCODE Processing Pipeline 9c64091e5425d06f02ac68b0f7a42cdc https://www.encodeproject.org/files/ENCFF687GFY/@@download/ENCFF687GFY.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF009IYR bigBed narrowPeak peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF477NPU 13229745 ENCODE Processing Pipeline 042953e55f4f13bb375f9df3d8cc0656 https://www.encodeproject.org/files/ENCFF009IYR/@@download/ENCFF009IYR.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF117KAN bigBed narrowPeak peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF687GFY 13351431 ENCODE Processing Pipeline 7e145b26cfae52b51e8cbff4df20a7dd https://www.encodeproject.org/files/ENCFF117KAN/@@download/ENCFF117KAN.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF831IWD bed narrowPeak conservative idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF477NPU, ENCFF487STG, ENCFF547MET, ENCFF687GFY 133729 ENCODE Processing Pipeline 25e30b9624462be3f0a8f5f7135a3966 https://www.encodeproject.org/files/ENCFF831IWD/@@download/ENCFF831IWD.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF120DVW bigBed narrowPeak optimal idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF132DDY 351628 ENCODE Processing Pipeline 3ab198cbfcbf3da3cf4a7e755900f53a https://www.encodeproject.org/files/ENCFF120DVW/@@download/ENCFF120DVW.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF132DDY bed narrowPeak optimal idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF477NPU, ENCFF487STG, ENCFF547MET, ENCFF687GFY 147487 ENCODE Processing Pipeline b37b7917a9265733283388c8502c8b01 https://www.encodeproject.org/files/ENCFF132DDY/@@download/ENCFF132DDY.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF564QTS bigBed narrowPeak conservative idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF831IWD 328559 ENCODE Processing Pipeline d02c8da32a261eb93d0caab0a1032113 https://www.encodeproject.org/files/ENCFF564QTS/@@download/ENCFF564QTS.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF229RMI fastq reads ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1176592691 Richard Myers, HAIB aa66cc22ac82d161ed420256e9db1eb6 SRA:SRR5112437 https://www.encodeproject.org/files/ENCFF229RMI/@@download/ENCFF229RMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF299JNL/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF978BAW fastq reads ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1113492994 Richard Myers, HAIB 749b740df71ae9787b8a95ef33638c2c SRA:SRR5112438 https://www.encodeproject.org/files/ENCFF978BAW/@@download/ENCFF978BAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF299JNL/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF870EFC bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF806TVZ, ENCFF978BAW 768264889 ENCODE Processing Pipeline 5ec8db8b6350bb71100a2c4151e17579 https://www.encodeproject.org/files/ENCFF870EFC/@@download/ENCFF870EFC.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF065XOC bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF229RMI, ENCFF806TVZ 808081021 ENCODE Processing Pipeline 61240bd50f9a6b8e196518e8a9fefc5f https://www.encodeproject.org/files/ENCFF065XOC/@@download/ENCFF065XOC.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF470MBB bam unfiltered alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 1158726795 ENCODE Processing Pipeline 8370b642e4d1dab7b5a43d3d4b5d6845 https://www.encodeproject.org/files/ENCFF470MBB/@@download/ENCFF470MBB.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF111WBO bam unfiltered alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 1096755931 ENCODE Processing Pipeline 0566c8b88a062c25822bd3ec48268666 https://www.encodeproject.org/files/ENCFF111WBO/@@download/ENCFF111WBO.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF081EGW bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 768147722 ENCODE Processing Pipeline 0439c0b05160aadeab7171194be651a1 https://www.encodeproject.org/files/ENCFF081EGW/@@download/ENCFF081EGW.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF627DYN bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 807967242 ENCODE Processing Pipeline 0712832e76da92124e3c872cf04e5a7c https://www.encodeproject.org/files/ENCFF627DYN/@@download/ENCFF627DYN.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF909EDQ bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 348474525 ENCODE Processing Pipeline 6ef3466012d368e859cdd11b51592786 https://www.encodeproject.org/files/ENCFF909EDQ/@@download/ENCFF909EDQ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF698RNZ bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 293850585 ENCODE Processing Pipeline db428b72f0e471e9b3914790382f00cc https://www.encodeproject.org/files/ENCFF698RNZ/@@download/ENCFF698RNZ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF671TIQ bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 268709895 ENCODE Processing Pipeline bd58b41fafa94621197c012f7ad025a1 https://www.encodeproject.org/files/ENCFF671TIQ/@@download/ENCFF671TIQ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF310FWM bed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 5230046 ENCODE Processing Pipeline ef19176ec04005c6f5d5a52bc65c5ec8 https://www.encodeproject.org/files/ENCFF310FWM/@@download/ENCFF310FWM.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF722SID bigBed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF310FWM 11292007 ENCODE Processing Pipeline 27489b2e39ac7f65b0e94ca150151273 https://www.encodeproject.org/files/ENCFF722SID/@@download/ENCFF722SID.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF702PWG bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 257796471 ENCODE Processing Pipeline 8cf1905d69e533b7f962ae9c2c490701 https://www.encodeproject.org/files/ENCFF702PWG/@@download/ENCFF702PWG.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF906LQJ bigBed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF708ZJC 10706230 ENCODE Processing Pipeline 95693478e1763183e213f2c3e5464520 https://www.encodeproject.org/files/ENCFF906LQJ/@@download/ENCFF906LQJ.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF260DWI bed narrowPeak conservative idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF057OUB, ENCFF310FWM, ENCFF547MET, ENCFF708ZJC 874858 ENCODE Processing Pipeline af638558ba9633c7dfadd2bc4ae7eb4e https://www.encodeproject.org/files/ENCFF260DWI/@@download/ENCFF260DWI.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF112EXI bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 418293386 ENCODE Processing Pipeline 55955345a7c4cbb79cdb5d8dc54674e3 https://www.encodeproject.org/files/ENCFF112EXI/@@download/ENCFF112EXI.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF186QKQ bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 448261025 ENCODE Processing Pipeline 2c4d426932e116cbc27296d9077d9478 https://www.encodeproject.org/files/ENCFF186QKQ/@@download/ENCFF186QKQ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF708ZJC bed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 4558568 ENCODE Processing Pipeline 2b0556392c3dcce1cf7408946f2cedb2 https://www.encodeproject.org/files/ENCFF708ZJC/@@download/ENCFF708ZJC.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF057OUB bed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 4593408 ENCODE Processing Pipeline a92c2e3cfd6e9983f5b5308d4fd504ce https://www.encodeproject.org/files/ENCFF057OUB/@@download/ENCFF057OUB.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF027XBS bigBed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF057OUB 10765643 ENCODE Processing Pipeline ba2c00cf7fe30bf8c568bda4cc826d68 https://www.encodeproject.org/files/ENCFF027XBS/@@download/ENCFF027XBS.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF362ESI bigBed narrowPeak optimal idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF048VNT 1464730 ENCODE Processing Pipeline 18cbe340792503fce1d836d3d235ebba https://www.encodeproject.org/files/ENCFF362ESI/@@download/ENCFF362ESI.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF048VNT bed narrowPeak optimal idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF057OUB, ENCFF310FWM, ENCFF547MET, ENCFF708ZJC 912745 ENCODE Processing Pipeline a469d67bd20bc36a1ede7f44f7a05567 https://www.encodeproject.org/files/ENCFF048VNT/@@download/ENCFF048VNT.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF042YPB bigBed narrowPeak conservative idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF260DWI 1415854 ENCODE Processing Pipeline 7d19c41449942b7a1788aa0c3e45ff8e https://www.encodeproject.org/files/ENCFF042YPB/@@download/ENCFF042YPB.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001NLD bigBed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIO 966293 Michael Snyder, Stanford 1989f8ea5538fabd79bf799aa46dda9a https://www.encodeproject.org/files/ENCFF001NLD/@@download/ENCFF001NLD.bigBed mm9 released low read length, low read depth ENCFF001NLE bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NLV 238063379 Michael Snyder, Stanford 1f33102573e9032c9ab6c17457e25463 https://www.encodeproject.org/files/ENCFF001NLE/@@download/ENCFF001NLE.bam mm9 released low read length, low read depth ENCFF001NLF bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NLX 218729201 Michael Snyder, Stanford 593d0a0c1be47abb5cabf3ca122b857a https://www.encodeproject.org/files/ENCFF001NLF/@@download/ENCFF001NLF.bam mm9 released low read length, low read depth ENCFF001NLG bigWig signal ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLE, ENCFF001NLF 212902878 Michael Snyder, Stanford 126090635ddfdc4100f1a7e9a6812fe3 https://www.encodeproject.org/files/ENCFF001NLG/@@download/ENCFF001NLG.bigWig mm9 released low read length, low read depth ENCFF001NLV fastq reads ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 911002490 Michael Snyder, Stanford 371e8f7219f38236fef86f25caa494d4 https://www.encodeproject.org/files/ENCFF001NLV/@@download/ENCFF001NLV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, low read depth ENCFF001NLX fastq reads ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 889716228 Michael Snyder, Stanford 17b1fadacffa05627612b33aa1a25391 https://www.encodeproject.org/files/ENCFF001NLX/@@download/ENCFF001NLX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, low read depth ENCFF001YIO bed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLE, ENCFF001NLF 376246 Michael Snyder, Stanford 5324416eaa9fdde3a11aac161d0186cc https://www.encodeproject.org/files/ENCFF001YIO/@@download/ENCFF001YIO.bed.gz mm9 released low read length, low read depth ENCFF871UGK bam unfiltered alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLX, ENCFF018NEO 984041686 ENCODE Processing Pipeline dffa1051177746bba801d109d786d8d0 https://www.encodeproject.org/files/ENCFF871UGK/@@download/ENCFF871UGK.bam mm10 released low read length, low read depth ENCFF710MHB bam unfiltered alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLV, ENCFF018NEO 1012994423 ENCODE Processing Pipeline 0d6ddb101dcbc078d386f6d17e47abca https://www.encodeproject.org/files/ENCFF710MHB/@@download/ENCFF710MHB.bam mm10 released low read length, low read depth ENCFF483OCA bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLX, ENCFF018NEO 491617440 ENCODE Processing Pipeline e16a61f83024852e70e71d7907c1a5a4 https://www.encodeproject.org/files/ENCFF483OCA/@@download/ENCFF483OCA.bam mm10 released low read length, low read depth ENCFF539ZGP bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLV, ENCFF018NEO 516170173 ENCODE Processing Pipeline 03477dc8b3bd720654a63c7d8aedd892 https://www.encodeproject.org/files/ENCFF539ZGP/@@download/ENCFF539ZGP.bam mm10 released low read length, low read depth ENCFF172SYN bigWig signal p-value ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF539ZGP 267531623 ENCODE Processing Pipeline 41b688506c615695a422d08798e8382d https://www.encodeproject.org/files/ENCFF172SYN/@@download/ENCFF172SYN.bigWig mm10 released low read length, low read depth ENCFF281ICM bigWig signal p-value ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF483OCA, ENCFF528WZN 273435153 ENCODE Processing Pipeline 6c99b3991b2590d0931027b869e39d7f https://www.encodeproject.org/files/ENCFF281ICM/@@download/ENCFF281ICM.bigWig mm10 released low read length, low read depth ENCFF950WZW bigWig signal p-value ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF483OCA, ENCFF528WZN, ENCFF539ZGP 361528842 ENCODE Processing Pipeline 5b41ab85a32c9f9e352e0aab769fabef https://www.encodeproject.org/files/ENCFF950WZW/@@download/ENCFF950WZW.bigWig mm10 released low read length, low read depth ENCFF301KFO bigWig fold change over control ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF539ZGP 225230901 ENCODE Processing Pipeline 79e7ac28b45ba8aae5a710e206e1feb5 https://www.encodeproject.org/files/ENCFF301KFO/@@download/ENCFF301KFO.bigWig mm10 released low read length, low read depth ENCFF497BSD bigWig fold change over control ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF483OCA, ENCFF528WZN 220626485 ENCODE Processing Pipeline db7ac9c4f4fa6ea9a63d146d068f17a1 https://www.encodeproject.org/files/ENCFF497BSD/@@download/ENCFF497BSD.bigWig mm10 released low read length, low read depth ENCFF111ZPI bigWig fold change over control ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF483OCA, ENCFF528WZN, ENCFF539ZGP 375855331 ENCODE Processing Pipeline 69a7d7f3b3753fc9db9b97d3c71b7f2a https://www.encodeproject.org/files/ENCFF111ZPI/@@download/ENCFF111ZPI.bigWig mm10 released low read length, low read depth ENCFF944CTC bed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF539ZGP 4849164 ENCODE Processing Pipeline 7a9f395dc43e22d36d941789094931f5 https://www.encodeproject.org/files/ENCFF944CTC/@@download/ENCFF944CTC.bed.gz mm10 released low read length, low read depth ENCFF037DYV bed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF483OCA, ENCFF528WZN 4850290 ENCODE Processing Pipeline 0fc93091567e22c2667f1df078ca8037 https://www.encodeproject.org/files/ENCFF037DYV/@@download/ENCFF037DYV.bed.gz mm10 released low read length, low read depth ENCFF818JAH bigBed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF944CTC 10544305 ENCODE Processing Pipeline a7d30ce70c9a8f405bc2a3690e2c871f https://www.encodeproject.org/files/ENCFF818JAH/@@download/ENCFF818JAH.bigBed mm10 released low read length, low read depth ENCFF480KIU bed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF483OCA, ENCFF528WZN, ENCFF539ZGP 5363859 ENCODE Processing Pipeline 174608f2c2b33152357a4564278e820a https://www.encodeproject.org/files/ENCFF480KIU/@@download/ENCFF480KIU.bed.gz mm10 released low read length, low read depth ENCFF483CLR bigBed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF037DYV 10462641 ENCODE Processing Pipeline 147e4a49256de3326e53018064083253 https://www.encodeproject.org/files/ENCFF483CLR/@@download/ENCFF483CLR.bigBed mm10 released low read length, low read depth ENCFF257AVB bed narrowPeak conservative idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF037DYV, ENCFF480KIU, ENCFF547MET, ENCFF944CTC 399082 ENCODE Processing Pipeline e37c41c3664a89f7b1640078080f43bc https://www.encodeproject.org/files/ENCFF257AVB/@@download/ENCFF257AVB.bed.gz mm10 released low read length, low read depth ENCFF526IME bigBed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF480KIU 13035048 ENCODE Processing Pipeline 994c132902f03fc503dc91be7c1f2583 https://www.encodeproject.org/files/ENCFF526IME/@@download/ENCFF526IME.bigBed mm10 released low read length, low read depth ENCFF245RMR bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF257AVB 793801 ENCODE Processing Pipeline fbfb43e2118cee17e4f7d9dd2d037042 https://www.encodeproject.org/files/ENCFF245RMR/@@download/ENCFF245RMR.bigBed mm10 released low read length, low read depth ENCFF965MMO bed narrowPeak optimal idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF037DYV, ENCFF480KIU, ENCFF547MET, ENCFF944CTC 414158 ENCODE Processing Pipeline f6eb7b5bd474f94cde2c65c4b5ca49f0 https://www.encodeproject.org/files/ENCFF965MMO/@@download/ENCFF965MMO.bed.gz mm10 released low read length, low read depth ENCFF225BEL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF965MMO 816267 ENCODE Processing Pipeline 50f67a5693435fd4cc707bda3a4d7752 https://www.encodeproject.org/files/ENCFF225BEL/@@download/ENCFF225BEL.bigBed mm10 released low read length, low read depth ENCFF538QDO fastq reads ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1221837046 Richard Myers, HAIB f1d4eaf0677dcf81cdfac526e10db8dc SRA:SRR5111961 https://www.encodeproject.org/files/ENCFF538QDO/@@download/ENCFF538QDO.fastq.gz Illumina HiSeq 2000 /files/ENCFF184PEP/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF712ARW fastq reads ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1068880582 Richard Myers, HAIB ba2d0bdce5ab479324301da227ab8e76 SRA:SRR5111960 https://www.encodeproject.org/files/ENCFF712ARW/@@download/ENCFF712ARW.fastq.gz Illumina HiSeq 2000 /files/ENCFF184PEP/ released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF251BAO bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF712ARW, ENCFF806TVZ 827138671 ENCODE Processing Pipeline aa48a9e02319815fba762d8d3d2a7d91 https://www.encodeproject.org/files/ENCFF251BAO/@@download/ENCFF251BAO.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF485SVS bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF538QDO, ENCFF806TVZ 933051317 ENCODE Processing Pipeline eb6cbc055aca8200b47cff2592eedb82 https://www.encodeproject.org/files/ENCFF485SVS/@@download/ENCFF485SVS.bam mm10-minimal archived low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF348JLT bam unfiltered alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 1082674981 ENCODE Processing Pipeline af42db1e6b64a70d1e2f357280167537 https://www.encodeproject.org/files/ENCFF348JLT/@@download/ENCFF348JLT.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF643YLR bam unfiltered alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 1229898234 ENCODE Processing Pipeline e07a2e164a8d9d7caa092399a15e73af https://www.encodeproject.org/files/ENCFF643YLR/@@download/ENCFF643YLR.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF624WZX bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 827048225 ENCODE Processing Pipeline 4984abc24d5bbb7abbc426b59c8aa4b5 https://www.encodeproject.org/files/ENCFF624WZX/@@download/ENCFF624WZX.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF049QHC bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 932950273 ENCODE Processing Pipeline 58bf61d6d3703e7ac42ee16f63afb549 https://www.encodeproject.org/files/ENCFF049QHC/@@download/ENCFF049QHC.bam mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF966STN bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 313041507 ENCODE Processing Pipeline fca8ddf716c6342f216d198a0b0c0029 https://www.encodeproject.org/files/ENCFF966STN/@@download/ENCFF966STN.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF594EQD bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 300878538 ENCODE Processing Pipeline 2261356b222422e93a11556498a4affb https://www.encodeproject.org/files/ENCFF594EQD/@@download/ENCFF594EQD.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF323HFE bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 347013431 ENCODE Processing Pipeline 47075111948a064cf7bee6eac82ed186 https://www.encodeproject.org/files/ENCFF323HFE/@@download/ENCFF323HFE.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF504WKO bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 255742046 ENCODE Processing Pipeline c49507ebade6408a7da530ebd7b865b5 https://www.encodeproject.org/files/ENCFF504WKO/@@download/ENCFF504WKO.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF045CCN bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 289463101 ENCODE Processing Pipeline e67eb75db6ff075d1900f10c465c552a https://www.encodeproject.org/files/ENCFF045CCN/@@download/ENCFF045CCN.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF291KIP bigBed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF857UVO 10531855 ENCODE Processing Pipeline f430169be3c72eba84d1762038566050 https://www.encodeproject.org/files/ENCFF291KIP/@@download/ENCFF291KIP.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF580LNR bed narrowPeak optimal idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF547MET, ENCFF720THG, ENCFF779QUY, ENCFF857UVO 894734 ENCODE Processing Pipeline 64bff7c334186c4ebe0fabf64abaf7d2 https://www.encodeproject.org/files/ENCFF580LNR/@@download/ENCFF580LNR.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF779QUY bed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 5589204 ENCODE Processing Pipeline aaf78d15e7219a802b8716701ecf6632 https://www.encodeproject.org/files/ENCFF779QUY/@@download/ENCFF779QUY.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF495KVA bigBed narrowPeak conservative idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF354TDS 1403537 ENCODE Processing Pipeline 826dd1931ac7d611c37e81d77ceecef7 https://www.encodeproject.org/files/ENCFF495KVA/@@download/ENCFF495KVA.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF857UVO bed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 4574680 ENCODE Processing Pipeline a4451cef81223dd21996d113f3ce6452 https://www.encodeproject.org/files/ENCFF857UVO/@@download/ENCFF857UVO.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF500SSQ bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 469213712 ENCODE Processing Pipeline d9838d670905ead714ed6bf719f898bc https://www.encodeproject.org/files/ENCFF500SSQ/@@download/ENCFF500SSQ.bigWig mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF720THG bed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 4970259 ENCODE Processing Pipeline 6bc30ede0e6cba95a1e81c78df7f4df7 https://www.encodeproject.org/files/ENCFF720THG/@@download/ENCFF720THG.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF627ZBY bigBed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF720THG 10834297 ENCODE Processing Pipeline 7fcc4aefdac571f9c0c235716478b3a8 https://www.encodeproject.org/files/ENCFF627ZBY/@@download/ENCFF627ZBY.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF858LGA bigBed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF779QUY 11181818 ENCODE Processing Pipeline 34faa343b9120b8e3bcf5d3177808868 https://www.encodeproject.org/files/ENCFF858LGA/@@download/ENCFF858LGA.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF923TYN bigBed narrowPeak optimal idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF580LNR 1436057 ENCODE Processing Pipeline 1e0d7d7a809922bdab8b26f54b103795 https://www.encodeproject.org/files/ENCFF923TYN/@@download/ENCFF923TYN.bigBed mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF354TDS bed narrowPeak conservative idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF547MET, ENCFF720THG, ENCFF779QUY, ENCFF857UVO 867864 ENCODE Processing Pipeline 3e5ce794a910ead95ee9159a9d7049c9 https://www.encodeproject.org/files/ENCFF354TDS/@@download/ENCFF354TDS.bed.gz mm10 released low read depth, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF001NZA bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NZD 515715187 Michael Snyder, Stanford 41b606d68db24ecf16b04cb798c77ef2 https://www.encodeproject.org/files/ENCFF001NZA/@@download/ENCFF001NZA.bam mm9 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001NZB bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NZF 590095268 Michael Snyder, Stanford fb171ad70ff61306716fc4f27fd29c09 https://www.encodeproject.org/files/ENCFF001NZB/@@download/ENCFF001NZB.bam mm9 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001NZC bigBed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YKE 709228 Michael Snyder, Stanford a192a0abbae905f193702c2fac5b2b02 https://www.encodeproject.org/files/ENCFF001NZC/@@download/ENCFF001NZC.bigBed mm9 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001NZD fastq reads ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1161825548 Michael Snyder, Stanford f844cadbcc81f97e4d8edb4ef1565a60 https://www.encodeproject.org/files/ENCFF001NZD/@@download/ENCFF001NZD.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001NZF fastq reads ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1249507627 Michael Snyder, Stanford ce14824798f3af559c6f76f53166ae0e https://www.encodeproject.org/files/ENCFF001NZF/@@download/ENCFF001NZF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001NZH bigWig signal ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NZA, ENCFF001NZB 391427449 Michael Snyder, Stanford 759dfb609b904d513b653d306c8d84b8 https://www.encodeproject.org/files/ENCFF001NZH/@@download/ENCFF001NZH.bigWig mm9 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001YKE bed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NZA, ENCFF001NZB 313083 Michael Snyder, Stanford eeba1f068aa6d0596cdb59e55320fbdc https://www.encodeproject.org/files/ENCFF001YKE/@@download/ENCFF001YKE.bed.gz mm9 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF302NWK bam unfiltered alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NZF, ENCFF018NEO 1323920210 ENCODE Processing Pipeline 6cfd4ed3d0be51f4a22dd3b2b2132a2f https://www.encodeproject.org/files/ENCFF302NWK/@@download/ENCFF302NWK.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF574RHH bam unfiltered alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NZD, ENCFF018NEO 1268384945 ENCODE Processing Pipeline 3f7b1f984dcc9441738cdd96fde5256d https://www.encodeproject.org/files/ENCFF574RHH/@@download/ENCFF574RHH.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF541FCH bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NZF, ENCFF018NEO 925763687 ENCODE Processing Pipeline 76101cdd976df7bb157d79b5e682f31c https://www.encodeproject.org/files/ENCFF541FCH/@@download/ENCFF541FCH.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF379DPO bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NZD, ENCFF018NEO 885383515 ENCODE Processing Pipeline 54a24c03ea292907db72a3ef2643bb29 https://www.encodeproject.org/files/ENCFF379DPO/@@download/ENCFF379DPO.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF383WXN bigWig signal p-value ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF541FCH 291260793 ENCODE Processing Pipeline ca035279b3e068b07b6a11cee6610743 https://www.encodeproject.org/files/ENCFF383WXN/@@download/ENCFF383WXN.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF297ZST bigWig fold change over control ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF379DPO, ENCFF541FCH 574731901 ENCODE Processing Pipeline 7c32800e316524df652bc5a2016e3e8f https://www.encodeproject.org/files/ENCFF297ZST/@@download/ENCFF297ZST.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF335JBI bed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF379DPO 5855088 ENCODE Processing Pipeline d030269d1f627f5869e2908106d3097a https://www.encodeproject.org/files/ENCFF335JBI/@@download/ENCFF335JBI.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF468PLO bed narrowPeak optimal idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF335JBI, ENCFF547MET, ENCFF566TGG, ENCFF780EPD 916833 ENCODE Processing Pipeline 466cad4e469c800c404aa6d99fe6a11d https://www.encodeproject.org/files/ENCFF468PLO/@@download/ENCFF468PLO.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF818JZI bigWig signal p-value ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF379DPO 291615071 ENCODE Processing Pipeline bb83886a1c8f3276740af65562df82f6 https://www.encodeproject.org/files/ENCFF818JZI/@@download/ENCFF818JZI.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF566TGG bed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF541FCH 6409905 ENCODE Processing Pipeline 0b87129a548630e8a736020a93c808fd https://www.encodeproject.org/files/ENCFF566TGG/@@download/ENCFF566TGG.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF895XED bigBed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF780EPD 12693604 ENCODE Processing Pipeline 202eacef62ba3cfdc23e993437231d4d https://www.encodeproject.org/files/ENCFF895XED/@@download/ENCFF895XED.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF813RDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF468PLO 1733115 ENCODE Processing Pipeline af96c26143155c43e37ca137ba6b393f https://www.encodeproject.org/files/ENCFF813RDM/@@download/ENCFF813RDM.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF978XXC bigWig fold change over control ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF379DPO 321345569 ENCODE Processing Pipeline 5fdbd76e17dadf89241cce3e9b6e3eec https://www.encodeproject.org/files/ENCFF978XXC/@@download/ENCFF978XXC.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF147CQP bigWig fold change over control ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF541FCH 356926534 ENCODE Processing Pipeline 022fbf9fea6a01d683f4dd60571fb4c5 https://www.encodeproject.org/files/ENCFF147CQP/@@download/ENCFF147CQP.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF780EPD bed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF379DPO, ENCFF541FCH 6723675 ENCODE Processing Pipeline 2e9fed484b29697b7fa55e08947c3512 https://www.encodeproject.org/files/ENCFF780EPD/@@download/ENCFF780EPD.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF883MPI bed narrowPeak conservative idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF335JBI, ENCFF547MET, ENCFF566TGG, ENCFF780EPD 859567 ENCODE Processing Pipeline 4a1b74f5703be2b0bb5a616294557739 https://www.encodeproject.org/files/ENCFF883MPI/@@download/ENCFF883MPI.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF052CNA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF883MPI 1646503 ENCODE Processing Pipeline 3b1715eceafa963656baacd546145a05 https://www.encodeproject.org/files/ENCFF052CNA/@@download/ENCFF052CNA.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF025VSJ bigWig signal p-value ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF379DPO, ENCFF541FCH 296193302 ENCODE Processing Pipeline e4ca9217f7beaa2a95e634f1eb34b54f https://www.encodeproject.org/files/ENCFF025VSJ/@@download/ENCFF025VSJ.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF298ODC bigBed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF335JBI 12795406 ENCODE Processing Pipeline 3141867f1a1047729f64338e55e3c20e https://www.encodeproject.org/files/ENCFF298ODC/@@download/ENCFF298ODC.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF257MML bigBed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF566TGG 12561559 ENCODE Processing Pipeline a4955e8f19822362cae392c334d18e44 https://www.encodeproject.org/files/ENCFF257MML/@@download/ENCFF257MML.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001NIV bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NJR 484699354 Michael Snyder, Stanford 65af3b7c77f755acb12a588bdfe6c657 https://www.encodeproject.org/files/ENCFF001NIV/@@download/ENCFF001NIV.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NIW bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NJU 522273308 Michael Snyder, Stanford db9c466ebc0d956a32ebe5b862d3bf18 https://www.encodeproject.org/files/ENCFF001NIW/@@download/ENCFF001NIW.bam mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NIX bigBed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIF 1135730 Michael Snyder, Stanford 8e2235b645baec2f4c906a6fc95d4ca0 https://www.encodeproject.org/files/ENCFF001NIX/@@download/ENCFF001NIX.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NIY bigWig signal ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NIV, ENCFF001NIW 346573751 Michael Snyder, Stanford bb2e2d5afdc3b6f889ea0a9abe83b298 https://www.encodeproject.org/files/ENCFF001NIY/@@download/ENCFF001NIY.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF001NJR fastq reads ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 916929123 Michael Snyder, Stanford ba0583a44ecc855561a5cbfa5b05b976 https://www.encodeproject.org/files/ENCFF001NJR/@@download/ENCFF001NJR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001NJU fastq reads ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1025607393 Michael Snyder, Stanford 6fa596c4a79f72dce31c82f2569d4c8b https://www.encodeproject.org/files/ENCFF001NJU/@@download/ENCFF001NJU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, low read depth, mild to moderate bottlenecking ENCFF001YIF bed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NIV, ENCFF001NIW 507189 Michael Snyder, Stanford 155616eca79faf21680243cc1f9fe7f3 https://www.encodeproject.org/files/ENCFF001YIF/@@download/ENCFF001YIF.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking ENCFF447EFQ bam unfiltered alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJR, ENCFF018NEO 1069686742 ENCODE Processing Pipeline c8cae4f498dfcf214add44d2a09f1169 https://www.encodeproject.org/files/ENCFF447EFQ/@@download/ENCFF447EFQ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF129QDM bam unfiltered alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJU, ENCFF018NEO 1172013878 ENCODE Processing Pipeline b913a4c98dc433b540ee179c27d2b7c5 https://www.encodeproject.org/files/ENCFF129QDM/@@download/ENCFF129QDM.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF927UUZ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJU, ENCFF018NEO 754294637 ENCODE Processing Pipeline c14a9d5f0e4b62be5177749d8da5736a https://www.encodeproject.org/files/ENCFF927UUZ/@@download/ENCFF927UUZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF316DIJ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJR, ENCFF018NEO 698509644 ENCODE Processing Pipeline 5dd6c6f86d1527d5248128e8b9fe185c https://www.encodeproject.org/files/ENCFF316DIJ/@@download/ENCFF316DIJ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF862DUC bigWig signal p-value ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF316DIJ, ENCFF339ZWC 236709668 ENCODE Processing Pipeline 7ab460cc2492276cbe7411e9ac95bfa0 https://www.encodeproject.org/files/ENCFF862DUC/@@download/ENCFF862DUC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF007WOA bigWig signal p-value ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF927UUZ 239116108 ENCODE Processing Pipeline 43c3867ee3c8ce81a09da21cdfa44d15 https://www.encodeproject.org/files/ENCFF007WOA/@@download/ENCFF007WOA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF360AAK bigWig fold change over control ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF927UUZ 301768694 ENCODE Processing Pipeline b5cd256b814c2f8a2f709e2fd45ef516 https://www.encodeproject.org/files/ENCFF360AAK/@@download/ENCFF360AAK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF942CER bigWig signal p-value ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF316DIJ, ENCFF339ZWC, ENCFF927UUZ 217762040 ENCODE Processing Pipeline 6d08e3697f7c26d7653b161cff495451 https://www.encodeproject.org/files/ENCFF942CER/@@download/ENCFF942CER.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF945VVN bigWig fold change over control ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF316DIJ, ENCFF339ZWC 291907219 ENCODE Processing Pipeline dcdad968fc677f2d1f7753ae016bdf0d https://www.encodeproject.org/files/ENCFF945VVN/@@download/ENCFF945VVN.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF724BKJ bigWig fold change over control ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF316DIJ, ENCFF339ZWC, ENCFF927UUZ 505432312 ENCODE Processing Pipeline ab72bd7465fa1fbe8b02ea8dbd72b2f2 https://www.encodeproject.org/files/ENCFF724BKJ/@@download/ENCFF724BKJ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF411DQD bed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF927UUZ 5750896 ENCODE Processing Pipeline d5e4e591712238f025bd57162e3f49f6 https://www.encodeproject.org/files/ENCFF411DQD/@@download/ENCFF411DQD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF933KUS bed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF316DIJ, ENCFF339ZWC 5498401 ENCODE Processing Pipeline 5863fa03ecd0a6d44fec16a4c4cd20d6 https://www.encodeproject.org/files/ENCFF933KUS/@@download/ENCFF933KUS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF542YQE bigBed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF774NDZ 12738963 ENCODE Processing Pipeline 6e88ae0f0dea35e37b640f6ed86a57f8 https://www.encodeproject.org/files/ENCFF542YQE/@@download/ENCFF542YQE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF774NDZ bed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF316DIJ, ENCFF339ZWC, ENCFF927UUZ 6184623 ENCODE Processing Pipeline 8fa02155d2feed48679ec47e1170c661 https://www.encodeproject.org/files/ENCFF774NDZ/@@download/ENCFF774NDZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF583DTV bigBed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF933KUS 12802874 ENCODE Processing Pipeline dab46fcaef668ed61f98e96f599f45ab https://www.encodeproject.org/files/ENCFF583DTV/@@download/ENCFF583DTV.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF651YGM bigBed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF411DQD 12824844 ENCODE Processing Pipeline ca2458a854750555dd573a6533b77652 https://www.encodeproject.org/files/ENCFF651YGM/@@download/ENCFF651YGM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF677GTK bed narrowPeak conservative idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF411DQD, ENCFF547MET, ENCFF774NDZ, ENCFF933KUS 549529 ENCODE Processing Pipeline 02ed60bd82a89f751ae2ecf6f7ff5f55 https://www.encodeproject.org/files/ENCFF677GTK/@@download/ENCFF677GTK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF487TBQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF677GTK 1340618 ENCODE Processing Pipeline 82c6484e39ccbfd3acd01c10804b4662 https://www.encodeproject.org/files/ENCFF487TBQ/@@download/ENCFF487TBQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF597MNA bed narrowPeak optimal idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF411DQD, ENCFF547MET, ENCFF774NDZ, ENCFF933KUS 607171 ENCODE Processing Pipeline eff9a7917a097096c3868fb1ba776295 https://www.encodeproject.org/files/ENCFF597MNA/@@download/ENCFF597MNA.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF618AOC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF597MNA 1452590 ENCODE Processing Pipeline 9cbf43bfe04aaa1cdc992feeda6b83bc https://www.encodeproject.org/files/ENCFF618AOC/@@download/ENCFF618AOC.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking ENCFF001LMM bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LMX 571365700 Bing Ren, UCSD 3201f50c481ef41d5cd2a95b775dfc9b https://www.encodeproject.org/files/ENCFF001LMM/@@download/ENCFF001LMM.bam mm9 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001LMN bigBed broadPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAM 705546 Bing Ren, UCSD 5fa8663c9f8f690c142bbeea88906aa7 https://www.encodeproject.org/files/ENCFF001LMN/@@download/ENCFF001LMN.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001LMO bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LMV 755964667 Bing Ren, UCSD bca9d37eeb16806ba14be507d7b0cb60 https://www.encodeproject.org/files/ENCFF001LMO/@@download/ENCFF001LMO.bam mm9 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001LMQ bigWig signal ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LMM, ENCFF001LMO 77491367 Bing Ren, UCSD 2ba36ec3997ea404d2ef4713ad9ab58f https://www.encodeproject.org/files/ENCFF001LMQ/@@download/ENCFF001LMQ.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001LMV fastq reads ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 873415933 Bing Ren, UCSD 97c751e2bffc3ab4e4321282863e9c86 https://www.encodeproject.org/files/ENCFF001LMV/@@download/ENCFF001LMV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001LMX fastq reads ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 831603429 Bing Ren, UCSD 2997f0b24bdcac54ec02ac864f1d8f4b https://www.encodeproject.org/files/ENCFF001LMX/@@download/ENCFF001LMX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001YAM bed broadPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LMM, ENCFF001LMO 424207 Bing Ren, UCSD 67077251a4a8d3a6601eccce4cb8b7f9 https://www.encodeproject.org/files/ENCFF001YAM/@@download/ENCFF001YAM.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF709TQG bam unfiltered alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 962568989 ENCODE Processing Pipeline ea930540fcb70a48728f6c1b5b765010 https://www.encodeproject.org/files/ENCFF709TQG/@@download/ENCFF709TQG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF516FZI bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 519238766 ENCODE Processing Pipeline 6142c7e75e870d7c8f68d406e5c6fbfa https://www.encodeproject.org/files/ENCFF516FZI/@@download/ENCFF516FZI.bam mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF769ZWZ bam unfiltered alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 880291142 ENCODE Processing Pipeline 34d6cf667dc8130b1d13d93a104b084d https://www.encodeproject.org/files/ENCFF769ZWZ/@@download/ENCFF769ZWZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF617FBG bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 433686094 ENCODE Processing Pipeline ab27875b64bf10edf2aebdfc822a2b66 https://www.encodeproject.org/files/ENCFF617FBG/@@download/ENCFF617FBG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF919KIP bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 417643502 ENCODE Processing Pipeline 107ad2035b3d7d77c5dd94b0df3554c5 https://www.encodeproject.org/files/ENCFF919KIP/@@download/ENCFF919KIP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF604HCZ bigBed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF930JOQ 8632065 ENCODE Processing Pipeline 1c5f5039590431448430f661868882c7 https://www.encodeproject.org/files/ENCFF604HCZ/@@download/ENCFF604HCZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF691VDG bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 438964300 ENCODE Processing Pipeline 576a99e3953a2881125d250a978a8c97 https://www.encodeproject.org/files/ENCFF691VDG/@@download/ENCFF691VDG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF930JOQ bed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 4175721 ENCODE Processing Pipeline 776eb10ff945264f38022f5733e44cd3 https://www.encodeproject.org/files/ENCFF930JOQ/@@download/ENCFF930JOQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF963BTQ bigBed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF676VZW 8645123 ENCODE Processing Pipeline 0e27f44dc45c97ba16b8eab94b1c93ab https://www.encodeproject.org/files/ENCFF963BTQ/@@download/ENCFF963BTQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF985NMC bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 330319926 ENCODE Processing Pipeline 4e52cefd81243c624cdbfd294863fb8e https://www.encodeproject.org/files/ENCFF985NMC/@@download/ENCFF985NMC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF586SMQ bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 201367104 ENCODE Processing Pipeline 8cd78ef49da61b6d97f8d9abb9e150f6 https://www.encodeproject.org/files/ENCFF586SMQ/@@download/ENCFF586SMQ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF439CKG bed narrowPeak conservative idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ, ENCFF547MET, ENCFF676VZW, ENCFF930JOQ 550888 ENCODE Processing Pipeline f89de744846a4bbc435b3ccd9b0d5551 https://www.encodeproject.org/files/ENCFF439CKG/@@download/ENCFF439CKG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF314XOM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF542WEE 1089230 ENCODE Processing Pipeline 6311bf3ac61b45f05ea014533c0c98e1 https://www.encodeproject.org/files/ENCFF314XOM/@@download/ENCFF314XOM.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF425YHR bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 308926252 ENCODE Processing Pipeline 4d3effb0a6d502d1879e4f9d3465529e https://www.encodeproject.org/files/ENCFF425YHR/@@download/ENCFF425YHR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF389SUI bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 281004834 ENCODE Processing Pipeline c29f225fbeb4fbf6dc3d47c1f4a79cee https://www.encodeproject.org/files/ENCFF389SUI/@@download/ENCFF389SUI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF676VZW bed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 3639685 ENCODE Processing Pipeline 7039ae0225ecc6fa15b7f61e6fce102a https://www.encodeproject.org/files/ENCFF676VZW/@@download/ENCFF676VZW.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF371UBQ bed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 2288101 ENCODE Processing Pipeline 1c62ed001e0aec3127dcbbc802135bfd https://www.encodeproject.org/files/ENCFF371UBQ/@@download/ENCFF371UBQ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF321JGY bigBed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ 4954799 ENCODE Processing Pipeline 02713df264aedd83a8256068a4898ee6 https://www.encodeproject.org/files/ENCFF321JGY/@@download/ENCFF321JGY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF651GYW bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF439CKG 1031122 ENCODE Processing Pipeline 616859b4230e57fc18168c6f9a7a02db https://www.encodeproject.org/files/ENCFF651GYW/@@download/ENCFF651GYW.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF542WEE bed narrowPeak optimal idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ, ENCFF547MET, ENCFF676VZW, ENCFF930JOQ 592190 ENCODE Processing Pipeline 485442bbbd097f4298f1472654f4e7f6 https://www.encodeproject.org/files/ENCFF542WEE/@@download/ENCFF542WEE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking insufficient read depth ENCFF001LNB bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LNH 202628935 Bing Ren, UCSD 7e9cbb6c4535d7218edcd3364c88d7a9 https://www.encodeproject.org/files/ENCFF001LNB/@@download/ENCFF001LNB.bam mm9 released low read length insufficient read depth extremely low read depth ENCFF001LNC bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LNR 563617934 Bing Ren, UCSD 41e07dd014e18e22840e5f54c0f5d0aa https://www.encodeproject.org/files/ENCFF001LNC/@@download/ENCFF001LNC.bam mm9 released low read length insufficient read depth extremely low read depth ENCFF001LND bigBed broadPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAN 277179 Bing Ren, UCSD f19f8a52dcea4f8a89181bc230cc4be9 https://www.encodeproject.org/files/ENCFF001LND/@@download/ENCFF001LND.bigBed mm9 released low read length insufficient read depth extremely low read depth ENCFF001LNG bigWig signal ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNB, ENCFF001LNC 71147714 Bing Ren, UCSD 51b824d211b6f203b04835c44c71e671 https://www.encodeproject.org/files/ENCFF001LNG/@@download/ENCFF001LNG.bigWig mm9 released low read length insufficient read depth extremely low read depth ENCFF001LNH fastq reads ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 223741018 Bing Ren, UCSD 4fcc668a15d21b45fab047dab977bc59 https://www.encodeproject.org/files/ENCFF001LNH/@@download/ENCFF001LNH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read length insufficient read depth extremely low read depth ENCFF001LNR fastq reads ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 798813652 Bing Ren, UCSD 3e603700018dc39c68627061a97aa983 https://www.encodeproject.org/files/ENCFF001LNR/@@download/ENCFF001LNR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read length insufficient read depth extremely low read depth ENCFF001YAN bed broadPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNB, ENCFF001LNC 155755 Bing Ren, UCSD 3d5e5a0eab8253f1761613c5d875098d https://www.encodeproject.org/files/ENCFF001YAN/@@download/ENCFF001YAN.bed.gz mm9 released low read length insufficient read depth extremely low read depth ENCFF861GFM bam unfiltered alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNH, ENCFF018NEO 251752554 ENCODE Processing Pipeline cefc7e48510064709bbc9b55b91beda4 https://www.encodeproject.org/files/ENCFF861GFM/@@download/ENCFF861GFM.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF474TGP bam unfiltered alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNR, ENCFF018NEO 873709674 ENCODE Processing Pipeline d1fd072b8ec170f997f9a4aaa8d61785 https://www.encodeproject.org/files/ENCFF474TGP/@@download/ENCFF474TGP.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF986OKG bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNH, ENCFF018NEO 164858010 ENCODE Processing Pipeline 9effa8ed0e16b5901dab0e3e9155ba25 https://www.encodeproject.org/files/ENCFF986OKG/@@download/ENCFF986OKG.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF351NWX bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNR, ENCFF018NEO 437122527 ENCODE Processing Pipeline fe49ddc32ea2bf94abde9dce6316562e https://www.encodeproject.org/files/ENCFF351NWX/@@download/ENCFF351NWX.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF154GME bigWig signal p-value ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 262735047 ENCODE Processing Pipeline 91034eca187e4f9d184ef79321e1c185 https://www.encodeproject.org/files/ENCFF154GME/@@download/ENCFF154GME.bigWig mm10 released low read length insufficient read depth extremely low read depth ENCFF072CKY bigWig fold change over control ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB 201526784 ENCODE Processing Pipeline 6ad8f532a1ff1f780895f38f74343271 https://www.encodeproject.org/files/ENCFF072CKY/@@download/ENCFF072CKY.bigWig mm10 released low read length insufficient read depth extremely low read depth ENCFF521ABG bigWig fold change over control ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 260141291 ENCODE Processing Pipeline ba7df73b059190e25dd5dcf88c2d1ecb https://www.encodeproject.org/files/ENCFF521ABG/@@download/ENCFF521ABG.bigWig mm10 released low read length insufficient read depth extremely low read depth ENCFF710AEX bigWig fold change over control ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 88884276 ENCODE Processing Pipeline 439c3af4120465eafb2fe8c4413ccf0a https://www.encodeproject.org/files/ENCFF710AEX/@@download/ENCFF710AEX.bigWig mm10 released low read length insufficient read depth extremely low read depth ENCFF714UOQ bed narrowPeak conservative idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF125NGA, ENCFF547MET, ENCFF720XKE, ENCFF730SNE 181128 ENCODE Processing Pipeline a8f1ddd81e62cc52758053d9757c4675 https://www.encodeproject.org/files/ENCFF714UOQ/@@download/ENCFF714UOQ.bed.gz mm10 released low read length insufficient read depth extremely low read depth ENCFF032LCU bigWig signal p-value ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB 308227636 ENCODE Processing Pipeline 7052fd14e0e6f98aa6b0584b36ca1607 https://www.encodeproject.org/files/ENCFF032LCU/@@download/ENCFF032LCU.bigWig mm10 released low read length insufficient read depth extremely low read depth ENCFF028MIW bigWig signal p-value ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 318694977 ENCODE Processing Pipeline cf447442436201f46473502998594153 https://www.encodeproject.org/files/ENCFF028MIW/@@download/ENCFF028MIW.bigWig mm10 released low read length insufficient read depth extremely low read depth ENCFF664QCZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF714UOQ 389967 ENCODE Processing Pipeline af09b7e8017adfecdd27a63bb6487354 https://www.encodeproject.org/files/ENCFF664QCZ/@@download/ENCFF664QCZ.bigBed mm10 released low read length insufficient read depth extremely low read depth ENCFF730SNE bed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 4206450 ENCODE Processing Pipeline 9270838aedefde53194cff4b001e7b31 https://www.encodeproject.org/files/ENCFF730SNE/@@download/ENCFF730SNE.bed.gz mm10 released low read length insufficient read depth extremely low read depth ENCFF458TAP bed narrowPeak optimal idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF125NGA, ENCFF547MET, ENCFF720XKE, ENCFF730SNE 228733 ENCODE Processing Pipeline 8e0f5fe0bcaabf2e70557b241f681914 https://www.encodeproject.org/files/ENCFF458TAP/@@download/ENCFF458TAP.bed.gz mm10 released low read length insufficient read depth extremely low read depth ENCFF959GKP bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF458TAP 455098 ENCODE Processing Pipeline e41b757811685481a09d87358f1f464d https://www.encodeproject.org/files/ENCFF959GKP/@@download/ENCFF959GKP.bigBed mm10 released low read length insufficient read depth extremely low read depth ENCFF369ALC bigBed narrowPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF720XKE 3066536 ENCODE Processing Pipeline 1a24bec5c8d7478664449fc390f52415 https://www.encodeproject.org/files/ENCFF369ALC/@@download/ENCFF369ALC.bigBed mm10 released low read length insufficient read depth extremely low read depth ENCFF577WGW bigBed narrowPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF125NGA 6486068 ENCODE Processing Pipeline e7e56c40ef90f9761e60e64212e21834 https://www.encodeproject.org/files/ENCFF577WGW/@@download/ENCFF577WGW.bigBed mm10 released low read length insufficient read depth extremely low read depth ENCFF720XKE bed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 1399643 ENCODE Processing Pipeline 83b78515e699ac9884c40d1f42253eba https://www.encodeproject.org/files/ENCFF720XKE/@@download/ENCFF720XKE.bed.gz mm10 released low read length insufficient read depth extremely low read depth ENCFF125NGA bed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB 3054852 ENCODE Processing Pipeline f55a968ba7ec095527b0c40d4ea9840d https://www.encodeproject.org/files/ENCFF125NGA/@@download/ENCFF125NGA.bed.gz mm10 released low read length insufficient read depth extremely low read depth ENCFF547DOH bigBed narrowPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF730SNE 10053526 ENCODE Processing Pipeline b69d1f45e992bd4c234c14fafca5ddd5 https://www.encodeproject.org/files/ENCFF547DOH/@@download/ENCFF547DOH.bigBed mm10 released low read length insufficient read depth extremely low read depth ENCFF001LRF bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LRL 696210751 Bing Ren, UCSD ee847f24ee6b9e59d95b0d1da8c9a2af https://www.encodeproject.org/files/ENCFF001LRF/@@download/ENCFF001LRF.bam mm9 released low read length, low read depth, inconsistent platforms ENCFF001LRG bigBed broadPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAZ 138463 Bing Ren, UCSD 0554319373ddbbe5424193eba420016a https://www.encodeproject.org/files/ENCFF001LRG/@@download/ENCFF001LRG.bigBed mm9 released low read length, low read depth, inconsistent platforms ENCFF001LRH bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LRT 760049405 Bing Ren, UCSD b32a01a86ab8881ae618c822b0d74cc2 https://www.encodeproject.org/files/ENCFF001LRH/@@download/ENCFF001LRH.bam mm9 released low read length, low read depth, inconsistent platforms ENCFF001LRJ bigWig signal ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LRF, ENCFF001LRH 83470884 Bing Ren, UCSD b144d4c71d5c3921fbf0a98468c52f14 https://www.encodeproject.org/files/ENCFF001LRJ/@@download/ENCFF001LRJ.bigWig mm9 released low read length, low read depth, inconsistent platforms ENCFF001LRL fastq reads ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 721564026 Bing Ren, UCSD 5d1b072b37202b54981ad287aa7c7d8c https://www.encodeproject.org/files/ENCFF001LRL/@@download/ENCFF001LRL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KVR/ released low read length, low read depth, inconsistent platforms ENCFF001LRT fastq reads ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 819053704 Bing Ren, UCSD a11847b3c696956d09a162cdf20aeb09 https://www.encodeproject.org/files/ENCFF001LRT/@@download/ENCFF001LRT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KWE/ released low read length, low read depth, inconsistent control read length, inconsistent platforms ENCFF001YAZ bed broadPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LRF, ENCFF001LRH 75096 Bing Ren, UCSD e434197e1989ea58597d1470d1bd1e80 https://www.encodeproject.org/files/ENCFF001YAZ/@@download/ENCFF001YAZ.bed.gz mm9 released low read length, low read depth, inconsistent platforms ENCFF655DIK bam unfiltered alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LRL, ENCFF018NEO 792115881 ENCODE Processing Pipeline a9f5eda67e3f5e4203540c80bc54cb88 https://www.encodeproject.org/files/ENCFF655DIK/@@download/ENCFF655DIK.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF134IUG bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LRL, ENCFF018NEO 449852591 ENCODE Processing Pipeline a18aa199b0076b0ca150def79b8a3ab1 https://www.encodeproject.org/files/ENCFF134IUG/@@download/ENCFF134IUG.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF940NRQ bam unfiltered alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRT, ENCFF018NEO 890417858 ENCODE Processing Pipeline 2800a404d63e237865aa05cccd160f39 https://www.encodeproject.org/files/ENCFF940NRQ/@@download/ENCFF940NRQ.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF514JHP bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRT, ENCFF018NEO 499875300 ENCODE Processing Pipeline a65cff310e8311005d644653ce8987fc https://www.encodeproject.org/files/ENCFF514JHP/@@download/ENCFF514JHP.bam mm10 released low read length, low read depth, inconsistent platforms ENCFF935CVE bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF746AKH 341886 ENCODE Processing Pipeline 0b6ce69c0ce6b60c5ca82904ede2823f https://www.encodeproject.org/files/ENCFF935CVE/@@download/ENCFF935CVE.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF408CGQ bigWig fold change over control ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF134IUG, ENCFF314OGN, ENCFF705BZU 338165984 ENCODE Processing Pipeline fdf146b90d277fe1cd74454288feaea2 https://www.encodeproject.org/files/ENCFF408CGQ/@@download/ENCFF408CGQ.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF585YDB bed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 4423772 ENCODE Processing Pipeline 523a7fc3a840ae70df5d3e956e1020df https://www.encodeproject.org/files/ENCFF585YDB/@@download/ENCFF585YDB.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF256FLB bigBed narrowPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF518LVB 10478837 ENCODE Processing Pipeline d5ffa949fd34f2abfe8ee55d0f3425f5 https://www.encodeproject.org/files/ENCFF256FLB/@@download/ENCFF256FLB.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF321MTN bigBed narrowPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF555WTT 1560176 ENCODE Processing Pipeline e31f01a553724b4557d66e20b3997a39 https://www.encodeproject.org/files/ENCFF321MTN/@@download/ENCFF321MTN.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF746AKH bed narrowPeak conservative idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF518LVB, ENCFF547MET, ENCFF555WTT, ENCFF585YDB 156798 ENCODE Processing Pipeline 90100932e439ff1a96d02128f9ad4bab https://www.encodeproject.org/files/ENCFF746AKH/@@download/ENCFF746AKH.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF555WTT bed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF134IUG, ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 643947 ENCODE Processing Pipeline 66cb94639d9b60a8d8d795f1aacce8ef https://www.encodeproject.org/files/ENCFF555WTT/@@download/ENCFF555WTT.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF744ZIL bigWig signal p-value ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 467999021 ENCODE Processing Pipeline 79c650fff8508470a95fbe269302c0db https://www.encodeproject.org/files/ENCFF744ZIL/@@download/ENCFF744ZIL.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF500CDH bed narrowPeak optimal idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF518LVB, ENCFF547MET, ENCFF555WTT, ENCFF585YDB 167457 ENCODE Processing Pipeline 4f82008b81e781adea9a653694afcf76 https://www.encodeproject.org/files/ENCFF500CDH/@@download/ENCFF500CDH.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF917JJU bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF500CDH 358339 ENCODE Processing Pipeline 361abef7f8288cad3ff3c7748d0609f5 https://www.encodeproject.org/files/ENCFF917JJU/@@download/ENCFF917JJU.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF235GWE bigWig signal p-value ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF134IUG, ENCFF314OGN, ENCFF705BZU 509705723 ENCODE Processing Pipeline 2251b25021d66f5ea0d796d6c7fec889 https://www.encodeproject.org/files/ENCFF235GWE/@@download/ENCFF235GWE.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF255RXH bigWig signal p-value ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF134IUG, ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 586726200 ENCODE Processing Pipeline 9f8ee41ed374f30f072724e349f21d6e https://www.encodeproject.org/files/ENCFF255RXH/@@download/ENCFF255RXH.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF733KOH bigWig fold change over control ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 352765703 ENCODE Processing Pipeline cf2d9fe22b43bfe55c5f983f36f3ddaa https://www.encodeproject.org/files/ENCFF733KOH/@@download/ENCFF733KOH.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF376VCU bigWig fold change over control ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF134IUG, ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 572460996 ENCODE Processing Pipeline de6400ebb7caa17f73b38be48d8b99ac https://www.encodeproject.org/files/ENCFF376VCU/@@download/ENCFF376VCU.bigWig mm10 released low read length, low read depth, inconsistent platforms ENCFF518LVB bed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF134IUG, ENCFF314OGN, ENCFF705BZU 4246103 ENCODE Processing Pipeline 65064d6534f8891b203cd7a7d902ab1d https://www.encodeproject.org/files/ENCFF518LVB/@@download/ENCFF518LVB.bed.gz mm10 released low read length, low read depth, inconsistent platforms ENCFF915ADP bigBed narrowPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF585YDB 10706002 ENCODE Processing Pipeline db1136a09e3cd3f12de37f728f3c2535 https://www.encodeproject.org/files/ENCFF915ADP/@@download/ENCFF915ADP.bigBed mm10 released low read length, low read depth, inconsistent platforms ENCFF001LRM bigBed broadPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBA 355901 Bing Ren, UCSD 9d6110d201fae502ad84832cb43601a5 https://www.encodeproject.org/files/ENCFF001LRM/@@download/ENCFF001LRM.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001LRN bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LRW 252847852 Bing Ren, UCSD 5f40ca85f003bbd98aab468498409ce6 https://www.encodeproject.org/files/ENCFF001LRN/@@download/ENCFF001LRN.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001LRP bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LRX 872212359 Bing Ren, UCSD c29e04dc5e490c77dbcf82d54059a1b9 https://www.encodeproject.org/files/ENCFF001LRP/@@download/ENCFF001LRP.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001LRQ bigWig signal ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRN, ENCFF001LRP 64880373 Bing Ren, UCSD 7bcc61be6934c39a93d75dcf70351551 https://www.encodeproject.org/files/ENCFF001LRQ/@@download/ENCFF001LRQ.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001LRW fastq reads ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 417563407 Bing Ren, UCSD 27d8add215abcec656bc1c4693839ffc https://www.encodeproject.org/files/ENCFF001LRW/@@download/ENCFF001LRW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001LRX fastq reads ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 823221182 Bing Ren, UCSD 95cb223c7b394648881cb9f534817b72 https://www.encodeproject.org/files/ENCFF001LRX/@@download/ENCFF001LRX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KXE/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001YBA bed broadPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRN, ENCFF001LRP 239679 Bing Ren, UCSD 729a4f3a2da1ccb20453b309c363be79 https://www.encodeproject.org/files/ENCFF001YBA/@@download/ENCFF001YBA.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF016XYS bam unfiltered alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 909758866 ENCODE Processing Pipeline ca10c5c2b4255c6e629cd939498b27e4 https://www.encodeproject.org/files/ENCFF016XYS/@@download/ENCFF016XYS.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF256SXG bam unfiltered alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 452265484 ENCODE Processing Pipeline 74d018c586254a7b4afdff835d54e5d1 https://www.encodeproject.org/files/ENCFF256SXG/@@download/ENCFF256SXG.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF616NLO bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 523847669 ENCODE Processing Pipeline 0d24fd5a9f513c7d8b136e94e568710a https://www.encodeproject.org/files/ENCFF616NLO/@@download/ENCFF616NLO.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF752ONZ bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 225050731 ENCODE Processing Pipeline 0d055c08c8bffff597817541925cf0a6 https://www.encodeproject.org/files/ENCFF752ONZ/@@download/ENCFF752ONZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF946MNK bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 247426860 ENCODE Processing Pipeline 976e0bf6b85757c12a9a2f470d623ee6 https://www.encodeproject.org/files/ENCFF946MNK/@@download/ENCFF946MNK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF334UXG bed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 4120219 ENCODE Processing Pipeline 79d0ec6ec0d0c6054d586fd28167c10f https://www.encodeproject.org/files/ENCFF334UXG/@@download/ENCFF334UXG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF901PPE bed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 3930317 ENCODE Processing Pipeline 36b9b5be926e3d901a9a6423f3ee4e3c https://www.encodeproject.org/files/ENCFF901PPE/@@download/ENCFF901PPE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF373NZZ bigBed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF334UXG 9984903 ENCODE Processing Pipeline aa6836a99179567cf46724a9b7ed03d5 https://www.encodeproject.org/files/ENCFF373NZZ/@@download/ENCFF373NZZ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF368ISS bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF972QLS 326849 ENCODE Processing Pipeline a564038ea3aff528231d47a64dbf3fe4 https://www.encodeproject.org/files/ENCFF368ISS/@@download/ENCFF368ISS.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF334ZCC bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 170324960 ENCODE Processing Pipeline f37228c7a91f8fe5155496cea7de4240 https://www.encodeproject.org/files/ENCFF334ZCC/@@download/ENCFF334ZCC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF244AZR bigBed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF502SKJ 10482209 ENCODE Processing Pipeline 4c329459fede756796b9bb4e32d5284c https://www.encodeproject.org/files/ENCFF244AZR/@@download/ENCFF244AZR.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF074WOC bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 209740151 ENCODE Processing Pipeline 4fa9a53171fe5dd454fa805f5e4f10f7 https://www.encodeproject.org/files/ENCFF074WOC/@@download/ENCFF074WOC.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF764GMG bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 107215420 ENCODE Processing Pipeline 40f22049c8ead83836f29fc04a71422c https://www.encodeproject.org/files/ENCFF764GMG/@@download/ENCFF764GMG.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF142CFK bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 198623865 ENCODE Processing Pipeline 754ed5dd277c12c09f3031d461b533dd https://www.encodeproject.org/files/ENCFF142CFK/@@download/ENCFF142CFK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF596YYI bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 171510604 ENCODE Processing Pipeline 854ab94913aff7939e40341d59059fd4 https://www.encodeproject.org/files/ENCFF596YYI/@@download/ENCFF596YYI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF502SKJ bed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 4513963 ENCODE Processing Pipeline acea9986f196080df2b9eb770ac6c266 https://www.encodeproject.org/files/ENCFF502SKJ/@@download/ENCFF502SKJ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF862SJD bigBed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF901PPE 9301062 ENCODE Processing Pipeline 0f67a609f951232a90151665ce4e2b27 https://www.encodeproject.org/files/ENCFF862SJD/@@download/ENCFF862SJD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF972QLS bed narrowPeak conservative idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF334UXG, ENCFF502SKJ, ENCFF547MET, ENCFF901PPE 176829 ENCODE Processing Pipeline d8bfbba97bc8720a4b27b2801b4270f1 https://www.encodeproject.org/files/ENCFF972QLS/@@download/ENCFF972QLS.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF443TPY bed narrowPeak optimal idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF334UXG, ENCFF502SKJ, ENCFF547MET, ENCFF901PPE 396257 ENCODE Processing Pipeline 632e5b2a4adf5b126946abb51f5ce210 https://www.encodeproject.org/files/ENCFF443TPY/@@download/ENCFF443TPY.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF316XOB bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF443TPY 738022 ENCODE Processing Pipeline eaf01e7b5d4eb85a367d7aaee79cb978 https://www.encodeproject.org/files/ENCFF316XOB/@@download/ENCFF316XOB.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient replicate concordance ENCFF001LGE bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGS 657181082 Bing Ren, UCSD c2c328ec6d3442c7103c014e8e4a1321 https://www.encodeproject.org/files/ENCFF001LGE/@@download/ENCFF001LGE.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF001LGG bigBed broadPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001XZV 222202 Bing Ren, UCSD 13d927dd7f4403dc89d8ea9990f4eae0 https://www.encodeproject.org/files/ENCFF001LGG/@@download/ENCFF001LGG.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF001LGK bigWig signal ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGE 87568591 Bing Ren, UCSD 7072c1ccf164ce11b0e77e7a79d56f94 https://www.encodeproject.org/files/ENCFF001LGK/@@download/ENCFF001LGK.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF001LGS fastq reads ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 726466319 Bing Ren, UCSD a9aa109d830884bf1939687de7cc0597 https://www.encodeproject.org/files/ENCFF001LGS/@@download/ENCFF001LGS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF001LGT fastq reads ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 984688995 Bing Ren, UCSD 5cfd5849fd51d13dd45158718c9a146a https://www.encodeproject.org/files/ENCFF001LGT/@@download/ENCFF001LGT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF001XZV bed broadPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGE 114694 Bing Ren, UCSD 1b86524bbbc7f6178920836f5d187ac6 https://www.encodeproject.org/files/ENCFF001XZV/@@download/ENCFF001XZV.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF313CNZ bam unfiltered alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGS, ENCFF018NEO 823209833 ENCODE Processing Pipeline 360c995fdcbb3050712f814ac7f57496 https://www.encodeproject.org/files/ENCFF313CNZ/@@download/ENCFF313CNZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF364XXK bam unfiltered alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGT, ENCFF018NEO 1098551044 ENCODE Processing Pipeline e5145dbd226c7569072238c9f71a60fb https://www.encodeproject.org/files/ENCFF364XXK/@@download/ENCFF364XXK.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF885KOQ bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGS, ENCFF018NEO 473145811 ENCODE Processing Pipeline de672145d6c570756ed9e92db6c04c1b https://www.encodeproject.org/files/ENCFF885KOQ/@@download/ENCFF885KOQ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF098DDX bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGT, ENCFF018NEO 603235031 ENCODE Processing Pipeline 319605b6214dcca1d392ebf410ab8f02 https://www.encodeproject.org/files/ENCFF098DDX/@@download/ENCFF098DDX.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF641JIL bigWig signal p-value ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF098DDX, ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 348502186 ENCODE Processing Pipeline 27fbbaa8b8228e1c6fba1ec768060689 https://www.encodeproject.org/files/ENCFF641JIL/@@download/ENCFF641JIL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF779EQA bigWig signal p-value ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF098DDX, ENCFF543ZVH 154931414 ENCODE Processing Pipeline f0c72f8edfa31c14854e0ce514d7ac48 https://www.encodeproject.org/files/ENCFF779EQA/@@download/ENCFF779EQA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF842ESP bigWig fold change over control ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF098DDX, ENCFF543ZVH 230962197 ENCODE Processing Pipeline 1157665f3bc4fb1e4a54db9d0915fa2e https://www.encodeproject.org/files/ENCFF842ESP/@@download/ENCFF842ESP.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF284DTM bed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 3436575 ENCODE Processing Pipeline f5f3bed528880e1b5b9c2e65bb1f1e0b https://www.encodeproject.org/files/ENCFF284DTM/@@download/ENCFF284DTM.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF813KOA bigWig signal p-value ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 333679413 ENCODE Processing Pipeline 5eb6743ba11c976281d7be44217aa520 https://www.encodeproject.org/files/ENCFF813KOA/@@download/ENCFF813KOA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF595EFE bigWig fold change over control ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF098DDX, ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 416744810 ENCODE Processing Pipeline 21cee2d0ce12a1631f952a871accae15 https://www.encodeproject.org/files/ENCFF595EFE/@@download/ENCFF595EFE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF731OCE bed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF098DDX, ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 5035994 ENCODE Processing Pipeline 0c21e539c4e67c91142714e85de308e2 https://www.encodeproject.org/files/ENCFF731OCE/@@download/ENCFF731OCE.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF089MGK bigWig fold change over control ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 183980420 ENCODE Processing Pipeline 1f2290a7bead06df37ce6f15ab29665d https://www.encodeproject.org/files/ENCFF089MGK/@@download/ENCFF089MGK.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF091ZMO bed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF098DDX, ENCFF543ZVH 4283691 ENCODE Processing Pipeline bd77e1ec4bd672dd6b7d1c53fecce1e5 https://www.encodeproject.org/files/ENCFF091ZMO/@@download/ENCFF091ZMO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF770SPK bigBed narrowPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF284DTM 7310582 ENCODE Processing Pipeline 2ed0f0c00fc28614948405f2c66c5b75 https://www.encodeproject.org/files/ENCFF770SPK/@@download/ENCFF770SPK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF771TYD bed narrowPeak conservative idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF091ZMO, ENCFF284DTM, ENCFF547MET, ENCFF731OCE 191072 ENCODE Processing Pipeline f9a8302aa166c90356c7cf01f76c65b3 https://www.encodeproject.org/files/ENCFF771TYD/@@download/ENCFF771TYD.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF115MYJ bigBed narrowPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF731OCE 10950140 ENCODE Processing Pipeline 075be51c5c632aeecb059e4e3f337531 https://www.encodeproject.org/files/ENCFF115MYJ/@@download/ENCFF115MYJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF866OMH bigBed narrowPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF091ZMO 10222450 ENCODE Processing Pipeline 2301dabd564293484a61d1f6d1139a63 https://www.encodeproject.org/files/ENCFF866OMH/@@download/ENCFF866OMH.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF095RQP bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF771TYD 388931 ENCODE Processing Pipeline 805d570633fae19a63db578935d6c8d0 https://www.encodeproject.org/files/ENCFF095RQP/@@download/ENCFF095RQP.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF648DAC bed narrowPeak optimal idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF091ZMO, ENCFF284DTM, ENCFF547MET, ENCFF731OCE 295782 ENCODE Processing Pipeline c8a94e6a8f9e26fb18c92d29736b8c98 https://www.encodeproject.org/files/ENCFF648DAC/@@download/ENCFF648DAC.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF602IVY bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF648DAC 641061 ENCODE Processing Pipeline 41d82652e9f8505d5f24f5a6e4304561 https://www.encodeproject.org/files/ENCFF602IVY/@@download/ENCFF602IVY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance insufficient read depth ENCFF001LPH bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPM 254630636 Bing Ren, UCSD a92e3f76e06848441e034c48f0df302d https://www.encodeproject.org/files/ENCFF001LPH/@@download/ENCFF001LPH.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001LPI bigBed broadPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAU 279471 Bing Ren, UCSD d1cb8c080bc04648cdf8dbf52a849f82 https://www.encodeproject.org/files/ENCFF001LPI/@@download/ENCFF001LPI.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001LPJ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPS 873530637 Bing Ren, UCSD 1b674e28c973deb194a0b427c4eb5c1f https://www.encodeproject.org/files/ENCFF001LPJ/@@download/ENCFF001LPJ.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001LPL bigWig signal ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPH, ENCFF001LPJ 73190584 Bing Ren, UCSD 9e755943847aa96a7109d0354a516815 https://www.encodeproject.org/files/ENCFF001LPL/@@download/ENCFF001LPL.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001LPM fastq reads ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 359116018 Bing Ren, UCSD 97ccc3f41ae802b4224e9a3eea899cda https://www.encodeproject.org/files/ENCFF001LPM/@@download/ENCFF001LPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001LPS fastq reads ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1220774328 Bing Ren, UCSD 7606703b05bbb6bbde0286b898ff08c4 https://www.encodeproject.org/files/ENCFF001LPS/@@download/ENCFF001LPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001YAU bed broadPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPH, ENCFF001LPJ 170766 Bing Ren, UCSD 009162122786abe5a9382ffa4d9325b5 https://www.encodeproject.org/files/ENCFF001YAU/@@download/ENCFF001YAU.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF841PCE bam unfiltered alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 387835816 ENCODE Processing Pipeline 5ca4b8b6de0109bc63dacea1dfca8cf2 https://www.encodeproject.org/files/ENCFF841PCE/@@download/ENCFF841PCE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF991YKF bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 201792282 ENCODE Processing Pipeline 83a881f355236d32ffd74101e2fb2fcb https://www.encodeproject.org/files/ENCFF991YKF/@@download/ENCFF991YKF.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF609TGE bam unfiltered alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 1310128134 ENCODE Processing Pipeline 135379ff952dd0ba9d533e2ba4298120 https://www.encodeproject.org/files/ENCFF609TGE/@@download/ENCFF609TGE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF385VIZ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 711917724 ENCODE Processing Pipeline 97516ef8397618e4604908cc73ac5a62 https://www.encodeproject.org/files/ENCFF385VIZ/@@download/ENCFF385VIZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF057RBI bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 156590895 ENCODE Processing Pipeline ffaab7c8bd3b545b02000acc33cf134f https://www.encodeproject.org/files/ENCFF057RBI/@@download/ENCFF057RBI.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF521NWX bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 335931215 ENCODE Processing Pipeline 45b19a84605bc73947e777da3cc946de https://www.encodeproject.org/files/ENCFF521NWX/@@download/ENCFF521NWX.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF991XOA bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 406353955 ENCODE Processing Pipeline e5fef89a2180b435f8a7d51c919a9e77 https://www.encodeproject.org/files/ENCFF991XOA/@@download/ENCFF991XOA.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF870ZXD bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 499736750 ENCODE Processing Pipeline a9ca5343f7bd126ebda885ef3fc6e074 https://www.encodeproject.org/files/ENCFF870ZXD/@@download/ENCFF870ZXD.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF473UHO bed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 2822090 ENCODE Processing Pipeline 67ce7392277b46ac3ffa37b5371844bd https://www.encodeproject.org/files/ENCFF473UHO/@@download/ENCFF473UHO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF825DDG bed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 5944125 ENCODE Processing Pipeline 10d704ebe066f0ce0171281681daf4b8 https://www.encodeproject.org/files/ENCFF825DDG/@@download/ENCFF825DDG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF086FYL bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 389351901 ENCODE Processing Pipeline 16039ef4e45c593f0d8047f2d69990e6 https://www.encodeproject.org/files/ENCFF086FYL/@@download/ENCFF086FYL.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF331JEE bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 456834258 ENCODE Processing Pipeline 0d7a5d43010480a2f906f762a26e2e8f https://www.encodeproject.org/files/ENCFF331JEE/@@download/ENCFF331JEE.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF687MGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF143RHK 473131 ENCODE Processing Pipeline 9a0f82c746bcafc669adb1b4cd566d6c https://www.encodeproject.org/files/ENCFF687MGE/@@download/ENCFF687MGE.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF070DKG bigBed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF825DDG 13053431 ENCODE Processing Pipeline f3f6be393ea15b82855ff8e88487c350 https://www.encodeproject.org/files/ENCFF070DKG/@@download/ENCFF070DKG.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF800MDD bigBed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF910QVG 13090646 ENCODE Processing Pipeline 4ced16ca52f644986f428cb44e5870d3 https://www.encodeproject.org/files/ENCFF800MDD/@@download/ENCFF800MDD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF143RHK bed narrowPeak optimal idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF473UHO, ENCFF547MET, ENCFF825DDG, ENCFF910QVG 233522 ENCODE Processing Pipeline 8193beedd91a6a28ea77b25367df8d14 https://www.encodeproject.org/files/ENCFF143RHK/@@download/ENCFF143RHK.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF910QVG bed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 6400076 ENCODE Processing Pipeline 06cf7f7b48971c3d95ddb26ea663cf84 https://www.encodeproject.org/files/ENCFF910QVG/@@download/ENCFF910QVG.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF922API bed narrowPeak conservative idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF473UHO, ENCFF547MET, ENCFF825DDG, ENCFF910QVG 212907 ENCODE Processing Pipeline 5b745f3e8940be6370c411fc2e4dfaae https://www.encodeproject.org/files/ENCFF922API/@@download/ENCFF922API.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF970FHD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF922API 443579 ENCODE Processing Pipeline c831c9014c29c112bcf039dd2e396f3d https://www.encodeproject.org/files/ENCFF970FHD/@@download/ENCFF970FHD.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF620YDJ bigBed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF473UHO 6253999 ENCODE Processing Pipeline d0819d561a53a790c5cff89e8a59e4aa https://www.encodeproject.org/files/ENCFF620YDJ/@@download/ENCFF620YDJ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity extremely low read depth ENCFF001LPT bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQA 295786426 Bing Ren, UCSD d76f5fa60ebb498a08baa029817dbac0 https://www.encodeproject.org/files/ENCFF001LPT/@@download/ENCFF001LPT.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001LPU bigBed broadPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAV 312524 Bing Ren, UCSD 019c18e835c6bcec0e827690becee3c0 https://www.encodeproject.org/files/ENCFF001LPU/@@download/ENCFF001LPU.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001LPV bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQF 529930573 Bing Ren, UCSD 428bc6fb1a27db5eadde3b8638743d46 https://www.encodeproject.org/files/ENCFF001LPV/@@download/ENCFF001LPV.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001LPW bigWig signal ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPT, ENCFF001LPV 70153391 Bing Ren, UCSD 4c85db792305f9b0cb072e609cab962f https://www.encodeproject.org/files/ENCFF001LPW/@@download/ENCFF001LPW.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001LQA fastq reads ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 405519061 Bing Ren, UCSD d0688acd2c24d09d038c54a983224a0e https://www.encodeproject.org/files/ENCFF001LQA/@@download/ENCFF001LQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001LQF fastq reads ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 834938469 Bing Ren, UCSD 9ee80ebf60ff2ae3f5d4c281027613df https://www.encodeproject.org/files/ENCFF001LQF/@@download/ENCFF001LQF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001YAV bed broadPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPT, ENCFF001LPV 195780 Bing Ren, UCSD 9a0b9a172d312a5d7d2c78505d3a886a https://www.encodeproject.org/files/ENCFF001YAV/@@download/ENCFF001YAV.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF545CBR bam unfiltered alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQF, ENCFF018NEO 865568985 ENCODE Processing Pipeline bf8a4847a3fbcb35432ab7a181aec49b https://www.encodeproject.org/files/ENCFF545CBR/@@download/ENCFF545CBR.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF074QUD bam unfiltered alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQA, ENCFF018NEO 453153800 ENCODE Processing Pipeline 5ec9bed92cbd25632668d09835ddb26d https://www.encodeproject.org/files/ENCFF074QUD/@@download/ENCFF074QUD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF526KRJ bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQF, ENCFF018NEO 388115545 ENCODE Processing Pipeline dc970721525d375b902d870408467535 https://www.encodeproject.org/files/ENCFF526KRJ/@@download/ENCFF526KRJ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF097KLO bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQA, ENCFF018NEO 266750728 ENCODE Processing Pipeline 9048ed5dc8b9bb401c775fe63e5a88ef https://www.encodeproject.org/files/ENCFF097KLO/@@download/ENCFF097KLO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF210CNY bigWig fold change over control ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 237357684 ENCODE Processing Pipeline c141c4180ea36dcf43b215f7ceff4c26 https://www.encodeproject.org/files/ENCFF210CNY/@@download/ENCFF210CNY.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF458VDY bed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF097KLO, ENCFF371CWA, ENCFF543ZOX 4299394 ENCODE Processing Pipeline 7d897044fa277b33621f14e098e22398 https://www.encodeproject.org/files/ENCFF458VDY/@@download/ENCFF458VDY.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF272CKS bed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 5326604 ENCODE Processing Pipeline 44f2d9ac83e2a7360ee082b88c168104 https://www.encodeproject.org/files/ENCFF272CKS/@@download/ENCFF272CKS.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF460VQY bigBed narrowPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF272CKS 12952601 ENCODE Processing Pipeline 227b9c211c8b169e24d0c62b40caab93 https://www.encodeproject.org/files/ENCFF460VQY/@@download/ENCFF460VQY.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF177HVQ bed narrowPeak conservative idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF272CKS, ENCFF458VDY, ENCFF547MET, ENCFF855XCG 234554 ENCODE Processing Pipeline a5606835ba0a6392ac0e258188611e01 https://www.encodeproject.org/files/ENCFF177HVQ/@@download/ENCFF177HVQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF138KVE bigBed narrowPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF458VDY 10302204 ENCODE Processing Pipeline 8b5685b8592895a66b22657a0d8f2b09 https://www.encodeproject.org/files/ENCFF138KVE/@@download/ENCFF138KVE.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF212ELZ bigBed narrowPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF855XCG 13011064 ENCODE Processing Pipeline 7ad006edaf8c5998a43a8c83124c5b93 https://www.encodeproject.org/files/ENCFF212ELZ/@@download/ENCFF212ELZ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF293KDO bigWig signal p-value ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF097KLO, ENCFF371CWA, ENCFF543ZOX 291113407 ENCODE Processing Pipeline f08ff306da22327f89cd97c60f8cd310 https://www.encodeproject.org/files/ENCFF293KDO/@@download/ENCFF293KDO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF800TFH bigWig fold change over control ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF097KLO, ENCFF371CWA, ENCFF543ZOX 201592370 ENCODE Processing Pipeline 9b30cae008efd44f04e8e12eede80793 https://www.encodeproject.org/files/ENCFF800TFH/@@download/ENCFF800TFH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF186SBE bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF177HVQ 557475 ENCODE Processing Pipeline a6857bae80a782583e02e1fe9dcaaed5 https://www.encodeproject.org/files/ENCFF186SBE/@@download/ENCFF186SBE.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF252SAA bed narrowPeak optimal idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF272CKS, ENCFF458VDY, ENCFF547MET, ENCFF855XCG 246128 ENCODE Processing Pipeline 9e9373f5a7492124121909579ccab211 https://www.encodeproject.org/files/ENCFF252SAA/@@download/ENCFF252SAA.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF774WRI bigWig signal p-value ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 343913464 ENCODE Processing Pipeline d064751448c9f7fe3cded0959970b431 https://www.encodeproject.org/files/ENCFF774WRI/@@download/ENCFF774WRI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF929ZOO bigWig signal p-value ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF097KLO, ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 412602899 ENCODE Processing Pipeline e2a3d9bd16402192b3a976099b20c0c6 https://www.encodeproject.org/files/ENCFF929ZOO/@@download/ENCFF929ZOO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF855XCG bed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF097KLO, ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 6283908 ENCODE Processing Pipeline 37115ea5ecdac6592b9cdc7abbb7d81f https://www.encodeproject.org/files/ENCFF855XCG/@@download/ENCFF855XCG.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF193PLE bigWig fold change over control ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF097KLO, ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 372096660 ENCODE Processing Pipeline bf45828ee43b2935169e78ee9203d312 https://www.encodeproject.org/files/ENCFF193PLE/@@download/ENCFF193PLE.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF548OFL bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF252SAA 578353 ENCODE Processing Pipeline f1ba76771a9951d71330bbdba3424573 https://www.encodeproject.org/files/ENCFF548OFL/@@download/ENCFF548OFL.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001LOL bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOV 982181210 Bing Ren, UCSD 9957bc39b7cabafafbc5646a5ed75ba2 https://www.encodeproject.org/files/ENCFF001LOL/@@download/ENCFF001LOL.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LOM bigBed broadPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAR 635120 Bing Ren, UCSD 3f174a6e0220c6a13d99138e4372efad https://www.encodeproject.org/files/ENCFF001LOM/@@download/ENCFF001LOM.bigBed mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LON bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOX 1099290550 Bing Ren, UCSD e67434e9f374ed2366fd6efb7e5e71a3 https://www.encodeproject.org/files/ENCFF001LON/@@download/ENCFF001LON.bam mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LOO bigWig signal ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LOL, ENCFF001LON 77607058 Bing Ren, UCSD 7a9f98cfb026efc2ecc6294bd409df21 https://www.encodeproject.org/files/ENCFF001LOO/@@download/ENCFF001LOO.bigWig mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LOV fastq reads ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 1169795981 Bing Ren, UCSD 709589a6b7e4a99a81104f63e602d14d https://www.encodeproject.org/files/ENCFF001LOV/@@download/ENCFF001LOV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001KPR/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LOX fastq reads ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 1219413862 Bing Ren, UCSD d6ddb0323a9faeac7a5b85fc4cda51a1 https://www.encodeproject.org/files/ENCFF001LOX/@@download/ENCFF001LOX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001KPS/ released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001YAR bed broadPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LOL, ENCFF001LON 373626 Bing Ren, UCSD 8a8326b4b394f658c656e817c6360d04 https://www.encodeproject.org/files/ENCFF001YAR/@@download/ENCFF001YAR.bed.gz mm9 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF970BCL bam unfiltered alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOV, ENCFF018NEO 1186412323 ENCODE Processing Pipeline 034f3adfbc841385f2e12d3d076db106 https://www.encodeproject.org/files/ENCFF970BCL/@@download/ENCFF970BCL.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF140PJE bam unfiltered alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOX, ENCFF018NEO 1336566474 ENCODE Processing Pipeline 4ee54eb50db7620a0f19764643635f55 https://www.encodeproject.org/files/ENCFF140PJE/@@download/ENCFF140PJE.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF796FRP bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOX, ENCFF018NEO 733007994 ENCODE Processing Pipeline bc6406cd26a4a6efa716e3b575721dab https://www.encodeproject.org/files/ENCFF796FRP/@@download/ENCFF796FRP.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF878FUZ bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOV, ENCFF018NEO 433815532 ENCODE Processing Pipeline bdbe1228ba154432285e481865455e0b https://www.encodeproject.org/files/ENCFF878FUZ/@@download/ENCFF878FUZ.bam mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF779CUB bigWig signal p-value ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF878FUZ 382194850 ENCODE Processing Pipeline 900a6550d99b3e4c914df9afc6cfd302 https://www.encodeproject.org/files/ENCFF779CUB/@@download/ENCFF779CUB.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF755RFZ bigWig signal p-value ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF796FRP 404047236 ENCODE Processing Pipeline c4c98c3f4b2f1f9c4bbc4edf123c7e1f https://www.encodeproject.org/files/ENCFF755RFZ/@@download/ENCFF755RFZ.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF124UGS bigWig signal p-value ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF545AEW, ENCFF796FRP, ENCFF878FUZ 625320786 ENCODE Processing Pipeline 59b036e15a87302b50d1eb58fbd08c3d https://www.encodeproject.org/files/ENCFF124UGS/@@download/ENCFF124UGS.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF291FCH bigWig fold change over control ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF878FUZ 193591420 ENCODE Processing Pipeline 2d7804bea99b52fd736964c4801f31fd https://www.encodeproject.org/files/ENCFF291FCH/@@download/ENCFF291FCH.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF022QBU bigWig fold change over control ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF796FRP 333004186 ENCODE Processing Pipeline f26452d326ec549fa6bce1ad0d2f202e https://www.encodeproject.org/files/ENCFF022QBU/@@download/ENCFF022QBU.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF378CWR bigWig fold change over control ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF545AEW, ENCFF796FRP, ENCFF878FUZ 581512827 ENCODE Processing Pipeline 057763d5af1f2dff14e8dc63b9e67c0e https://www.encodeproject.org/files/ENCFF378CWR/@@download/ENCFF378CWR.bigWig mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF496XMO bed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF878FUZ 4525783 ENCODE Processing Pipeline 9bba73ad1bf16b715c3adf341d81bc49 https://www.encodeproject.org/files/ENCFF496XMO/@@download/ENCFF496XMO.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF410BBY bigBed narrowPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF496XMO 10221966 ENCODE Processing Pipeline 6a486115d43c6d070f3d2fb9193b02da https://www.encodeproject.org/files/ENCFF410BBY/@@download/ENCFF410BBY.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF741HGT bed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF796FRP 5360015 ENCODE Processing Pipeline c0d9c029cb22d8304bb5834505c93244 https://www.encodeproject.org/files/ENCFF741HGT/@@download/ENCFF741HGT.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF617ZHN bigBed narrowPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF741HGT 12951330 ENCODE Processing Pipeline 75773cff5c1ade79451e599297299455 https://www.encodeproject.org/files/ENCFF617ZHN/@@download/ENCFF617ZHN.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF285RDR bed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF545AEW, ENCFF796FRP, ENCFF878FUZ 6030109 ENCODE Processing Pipeline 8f59beb8610357214aab4c47ec866abc https://www.encodeproject.org/files/ENCFF285RDR/@@download/ENCFF285RDR.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF482BMK bigBed narrowPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF285RDR 13295424 ENCODE Processing Pipeline 165726b17a855f4ccbe4b34d6b63d896 https://www.encodeproject.org/files/ENCFF482BMK/@@download/ENCFF482BMK.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF621EVL bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF659OSP 1103512 ENCODE Processing Pipeline da3fd495a300124ca805d229f69b8d62 https://www.encodeproject.org/files/ENCFF621EVL/@@download/ENCFF621EVL.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF731BAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF945WJZ 1202793 ENCODE Processing Pipeline 80f8bc3f3fa946b9ca6a62c7c489405a https://www.encodeproject.org/files/ENCFF731BAQ/@@download/ENCFF731BAQ.bigBed mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF659OSP bed narrowPeak conservative idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF285RDR, ENCFF496XMO, ENCFF547MET, ENCFF741HGT 445380 ENCODE Processing Pipeline b68fee5a4772a6b9a03371c9ba4ab017 https://www.encodeproject.org/files/ENCFF659OSP/@@download/ENCFF659OSP.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF945WJZ bed narrowPeak optimal idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF285RDR, ENCFF496XMO, ENCFF547MET, ENCFF741HGT 501803 ENCODE Processing Pipeline 3537a6ecae7ae45e84420d2a443875e2 https://www.encodeproject.org/files/ENCFF945WJZ/@@download/ENCFF945WJZ.bed.gz mm10 released low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001LIG bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIV 215329006 Bing Ren, UCSD 367a8614a33a60b218a6b056cd7239dd https://www.encodeproject.org/files/ENCFF001LIG/@@download/ENCFF001LIG.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIH bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIW 590139828 Bing Ren, UCSD 029d69499551cc1505e7e7a7fbeca62c https://www.encodeproject.org/files/ENCFF001LIH/@@download/ENCFF001LIH.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LII bigBed broadPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAB 490533 Bing Ren, UCSD 3ce44e997d627e2ff545144ad38ee8ad https://www.encodeproject.org/files/ENCFF001LII/@@download/ENCFF001LII.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIM bigWig signal ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIG, ENCFF001LIH 68260234 Bing Ren, UCSD 6b832220a5f3e32fc562e380df2aaeda https://www.encodeproject.org/files/ENCFF001LIM/@@download/ENCFF001LIM.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIV fastq reads ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 857670263 Bing Ren, UCSD 51b80cb1f332091dfbbec78c834e211a https://www.encodeproject.org/files/ENCFF001LIV/@@download/ENCFF001LIV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001LIW fastq reads ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 904548028 Bing Ren, UCSD d6167997aa6af2471e51a9e66a26c951 https://www.encodeproject.org/files/ENCFF001LIW/@@download/ENCFF001LIW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001YAB bed broadPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIG, ENCFF001LIH 266618 Bing Ren, UCSD ebda03ec0ccea6878095d3d899188186 https://www.encodeproject.org/files/ENCFF001YAB/@@download/ENCFF001YAB.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF431EKZ bam unfiltered alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIW, ENCFF018NEO 948750062 ENCODE Processing Pipeline 815a7c7869a5b024ab4047057038a4bd https://www.encodeproject.org/files/ENCFF431EKZ/@@download/ENCFF431EKZ.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF317KQT bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIW, ENCFF018NEO 436048000 ENCODE Processing Pipeline 5d8c665bb48f430e00ca7669f7d42269 https://www.encodeproject.org/files/ENCFF317KQT/@@download/ENCFF317KQT.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF508RPT bam unfiltered alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIV, ENCFF018NEO 867182811 ENCODE Processing Pipeline e99b19c4785cd0a49cb521513260f21d https://www.encodeproject.org/files/ENCFF508RPT/@@download/ENCFF508RPT.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF623XLE bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIV, ENCFF018NEO 249245474 ENCODE Processing Pipeline 4bcefa9f7856352790db72d3df538d08 https://www.encodeproject.org/files/ENCFF623XLE/@@download/ENCFF623XLE.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF768BAT bigWig signal p-value ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF623XLE, ENCFF745XER 272020166 ENCODE Processing Pipeline cf109361bb0780a8adc483b984c85933 https://www.encodeproject.org/files/ENCFF768BAT/@@download/ENCFF768BAT.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF250IEX bigWig fold change over control ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF317KQT, ENCFF555HBY, ENCFF745XER 189757885 ENCODE Processing Pipeline b6e2ee70c7eebeeb8cb46c71fa648bf0 https://www.encodeproject.org/files/ENCFF250IEX/@@download/ENCFF250IEX.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF597EPU bed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF317KQT, ENCFF555HBY, ENCFF745XER 4161424 ENCODE Processing Pipeline 7f8cc87c7bf8bdad08cd95f7e367678e https://www.encodeproject.org/files/ENCFF597EPU/@@download/ENCFF597EPU.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF631EVW bed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF623XLE, ENCFF745XER 2214137 ENCODE Processing Pipeline e60a1a5b238692b38adf4b60c6a81dcc https://www.encodeproject.org/files/ENCFF631EVW/@@download/ENCFF631EVW.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF645XMJ bigBed narrowPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF597EPU 8821390 ENCODE Processing Pipeline 9a6b1c9a6a90c8fe342f00ef2b45d3d3 https://www.encodeproject.org/files/ENCFF645XMJ/@@download/ENCFF645XMJ.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF647NWK bed narrowPeak optimal idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF287OUE, ENCFF547MET, ENCFF597EPU, ENCFF631EVW 330458 ENCODE Processing Pipeline 56a7e6ff11120dc6c5b99c2fd92932b7 https://www.encodeproject.org/files/ENCFF647NWK/@@download/ENCFF647NWK.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF657HFE bigWig fold change over control ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF317KQT, ENCFF555HBY, ENCFF623XLE, ENCFF745XER 269709391 ENCODE Processing Pipeline b7028589504fe5b7b409c068b7d9dc6c https://www.encodeproject.org/files/ENCFF657HFE/@@download/ENCFF657HFE.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF024PGB bigBed narrowPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF631EVW 4714388 ENCODE Processing Pipeline 3de26bdee007cd2a9343fde3812fe8ed https://www.encodeproject.org/files/ENCFF024PGB/@@download/ENCFF024PGB.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF400OMH bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF647NWK 617335 ENCODE Processing Pipeline e42327a2eeb1b5a53c37c089d5ed48b6 https://www.encodeproject.org/files/ENCFF400OMH/@@download/ENCFF400OMH.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF213SXQ bigWig signal p-value ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF317KQT, ENCFF555HBY, ENCFF745XER 341101612 ENCODE Processing Pipeline 411b5a93506d55b9cf2ad6a88efb5394 https://www.encodeproject.org/files/ENCFF213SXQ/@@download/ENCFF213SXQ.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF280INN bigBed narrowPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF287OUE 10383159 ENCODE Processing Pipeline 327ac66b1c93519e52d186a1f858063a https://www.encodeproject.org/files/ENCFF280INN/@@download/ENCFF280INN.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF998RUD bigWig signal p-value ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF317KQT, ENCFF555HBY, ENCFF623XLE, ENCFF745XER 368526713 ENCODE Processing Pipeline 63bfaed5e3074dd58b1e8ecac29926ad https://www.encodeproject.org/files/ENCFF998RUD/@@download/ENCFF998RUD.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF677WAH bigWig fold change over control ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF623XLE, ENCFF745XER 116985969 ENCODE Processing Pipeline cef463169c6d20106440cb96610bb24d https://www.encodeproject.org/files/ENCFF677WAH/@@download/ENCFF677WAH.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF287OUE bed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF317KQT, ENCFF555HBY, ENCFF623XLE, ENCFF745XER 5207015 ENCODE Processing Pipeline 599fd4974439475ff9d4274788c43dad https://www.encodeproject.org/files/ENCFF287OUE/@@download/ENCFF287OUE.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF650IKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF635DJY 575898 ENCODE Processing Pipeline 6c17b5928a6c43b14773ae058c495a34 https://www.encodeproject.org/files/ENCFF650IKN/@@download/ENCFF650IKN.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF635DJY bed narrowPeak conservative idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF287OUE, ENCFF547MET, ENCFF597EPU, ENCFF631EVW 298887 ENCODE Processing Pipeline 83733fa67b9e0d829c68268602e7e6bc https://www.encodeproject.org/files/ENCFF635DJY/@@download/ENCFF635DJY.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth extremely low read depth