<<include colors_fonts_patterns.conf>>

<<include etc/housekeeping.conf>>

<<include ce10.ideogram.conf>>
<<include ce10.ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

karyotype   = ce10.chrM.karyotype

chromosomes_units           = 10
chromosomes_display_default = no
chromosomes                 = chrM

<plots>

<plot>
type = tile
file = ce10.chrM.plus.protein_coding.tile
layers = 2
layers_overflow = hide
margin = 0.2u
thickness = 12
padding = 6
orientation = out
stroke_thickness = 1
stroke_color = green
color = green
r0 = 0.97r
r1 = 0.99r
</plot>

<plot>
type = text
file = ce10.chrM.protein_coding.text
color      = black
label_font = bold
label_size = 36p
label_parallel   = no
padding = 15p
rpadding = 15p
z       = 1
r0 = 1.02r
r1 = 1.22r
</plot>

type      = histogram
thickness = 0.5

<plot>
show    = yes
file    = ce10.36mers.ce10.bowtie.v2.unique.chrM.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = dred
color   = dred
min     = 0
max     = 36
r0      = 0.91r
r1      = 0.96r
</plot>

<plot>
show    = yes
file    = circos_plot_files/C.elegans.TF-Young-Adult-W03F9.2-ChIP-Strain-OP215-Rep1.chrM.unique.MM0.plus.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = black
color   = lyellow
min     = 0
max     = 420
r0      = 0.80r
r1      = 0.90r
</plot>

<plot>
show    = yes
file    = circos_plot_files/C.elegans.TF-Young-Adult-W03F9.2-ChIP-Strain-OP215-Rep1.chrM.unique.MM0.minus.wig
z       = 5
max_gap = 0u
orientation = in
fill_under = yes
fill_color = lyellow
color   = black
min     = 0
max     = 420
r0      = 0.70r
r1      = 0.80r
</plot>

# <plot>
# show    = yes
# file    = circos_plot_files/C.elegans.TF-Young-Adult-W03F9.2-Input-Strain-OP215-Rep1.chrM.unique.MM0.plus.wig
# z       = 5
# max_gap = 0u
# fill_under = yes
# fill_color = lred
# color   = black
# min     = 0
# max     = 420
# r0      = 0.60r
# r1      = 0.70r
# </plot>

# <plot>
# show    = yes
# file    = circos_plot_files/C.elegans.TF-Young-Adult-W03F9.2-Input-Strain-OP215-Rep1.chrM.unique.MM0.minus.wig
# z       = 5
# max_gap = 0u
# orientation = in
# fill_under = yes
# fill_color = lblue
# color   = black
# min     = 0
# max     = 420
# r0      = 0.50r
# r1      = 0.60r
# </plot>

</plots>
