res <- results(dds_1, contrast=c("condition", "24_10_GFP", "24_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-24_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "24_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-24_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "24_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-24_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "25_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-25_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "25_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-25_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "25_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-25_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_GFP", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_GFP-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "24_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-24_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "24_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-24_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "25_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-25_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "25_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-25_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "25_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-25_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_None", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_None-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "24_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-24_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "25_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-25_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "25_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-25_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "25_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-25_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_PR", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_PR-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "25_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-25_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "25_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-25_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "25_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-25_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "24_10_TDP", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..24_10_TDP-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "25_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-25_10_None.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "25_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-25_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "25_10_GFP", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_GFP-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_None", "25_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_None-vs-25_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "25_10_None", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_None-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_None", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_None-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_None", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_None-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "25_10_None", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_None-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "25_10_None", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_None-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_PR", "25_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_PR-vs-25_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_PR", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_PR-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_PR", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_PR-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "25_10_PR", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_PR-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "25_10_PR", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_PR-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_TDP", "26_10_GFP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_TDP-vs-26_10_GFP.txt")
res <- results(dds_1, contrast=c("condition", "25_10_TDP", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_TDP-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "25_10_TDP", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_TDP-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "25_10_TDP", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..25_10_TDP-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "26_10_GFP", "26_10_None" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..26_10_GFP-vs-26_10_None.txt")
res <- results(dds_1, contrast=c("condition", "26_10_GFP", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..26_10_GFP-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "26_10_GFP", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..26_10_GFP-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "26_10_None", "26_10_PR" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..26_10_None-vs-26_10_PR.txt")
res <- results(dds_1, contrast=c("condition", "26_10_None", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..26_10_None-vs-26_10_TDP.txt")
res <- results(dds_1, contrast=c("condition", "26_10_PR", "26_10_TDP" ))
write.table(res, "MACS.peaks.400merge.400bp.counts..26_10_PR-vs-26_10_TDP.txt")