Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2021_Haloferax-chromatin/2021-09-14-Hi-C-rerun/juicer-H.volcanii_WT_stationary-pooled-rerun -y none -s none -p /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/all.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/bwa-indexes/all.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  169,663,063
 Normal Paired: 134,241,349 (79.12%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 35,421,714 (20.88%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 134,241,349 (79.12%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,198,234 (4.24% / 19.56%)
Hi-C Contacts: 29,593,758 (17.44% / 80.44%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,870,613  (3.46% / 15.96%)
Intra-chromosomal: 23,723,145  (13.98% / 64.48%)
Short Range (<20Kb): 18,897,393  (11.14% / 51.36%)
Long Range (>20Kb): 4,743,034  (2.80% / 12.89%)