<<include /software/circos/0.69-9/circos-0.69-9/etc/colors_fonts_patterns.conf>>

<<include /software/circos/0.69-9/circos-0.69-9/etc/housekeeping.conf>>

<<include /oak/stanford/groups/akundaje/marinovg/papers/2021_Haloferax-chromatin/2021-02-16-figures/ideogram.conf>>
<<include /oak/stanford/groups/akundaje/marinovg/papers/2021_Haloferax-chromatin/2021-02-16-figures/ticks.conf>>

<image>
<<include /software/circos/0.69-9/circos-0.69-9/etc/image.conf>>
</image>

karyotype = /oak/stanford/groups/akundaje/marinovg/papers/2021_Haloferax-chromatin/2021-02-16-figures/pHV2.karyotype

chromosomes_units           = 10
chromosomes_display_default = no
chromosomes                 = pHV2

<plots>

# <plot>
# type = tile
# file = /oak/stanford/groups/akundaje/marinovg/papers/2020_organelles_TFs/2018-07-14-ENCODE-TFs/config-files/hg19.chrM.minus.protein_coding.tile
# layers = 2
# layers_overflow = hide
# margin = 0.2u
# thickness = 12
# padding = 6
# orientation = out
# stroke_thickness = 1
# stroke_color = dorange
# color = dorange
# r0 = 0.98r
# r1 = 0.99r
# </plot>

type      = histogram
thickness = 0.5

<plot>
show    = yes
file    = L1665-Haloferax_volcanii_exponential_ATAC_1pFA_rep3.2x36mers.unique.dedup.wig.pHV2
z       = 5
max_gap = 0u
fill_under = yes
fill_color = dred
color   = red
min     = 0
max     = 1600
r0      = 0.80r
r1      = 0.999r
</plot>

</plots>
