Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format


FIMO - Motif search tool

FIMO version 5.4.1, (Release date: Sat Aug 21 19:23:23 2021 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE ./all.fixed.TSS-100bp.fa
Database contains 3019 sequences, 603800 residues

MOTIFS streme_out/streme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
1-CGASGMCGACGACGA 15 CGAGGCCGACGACGA
2-BATGASCGACVMCGM 15 CATGAGCGACGACGA
3-AGGAGTTCGW 10 AGGAGTTCGT
4-AACRSTTWT 9 AACGCTTTT
5-CCCGCGGCG 9 CCCGCGGCG
6-CACCTCC 7 CACCTCC
7-SVAATC 6 CGAATC
8-TCGACCCCGAGG 12 TCGACCCCGAGG
9-CTCCHCGAYG 10 CTCCCCGACG
10-CGTCCATACGCG 12 CGTCCATACGCG

Random model letter frequencies (./background):
A 0.179 C 0.321 G 0.321 T 0.179

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
10-CGTCCATACGCG STREME-10 chr - 178735 178746 1.16e-07 0.033 CGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr + 826736 826747 1.16e-07 0.033 CGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr + 1194946 1194957 1.16e-07 0.033 CGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr + 1689311 1689322 1.16e-07 0.033 CGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr - 198703 198714 2.32e-07 0.0528 CGTCCATACCCG
10-CGTCCATACGCG STREME-10 chr + 129102 129113 2.96e-07 0.0563 CGTCCATACACG
10-CGTCCATACGCG STREME-10 chr + 2598863 2598874 4.12e-07 0.0669 CGTCCATACGGG
10-CGTCCATACGCG STREME-10 chr + 935414 935425 5.28e-07 0.0669 GGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr - 1436469 1436480 5.28e-07 0.0669 GGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr - 145429 145440 1e-06 0.102 CGTCCATACCGG
10-CGTCCATACGCG STREME-10 chr + 2574135 2574146 1e-06 0.102 CGTCCATACCGG
10-CGTCCATACGCG STREME-10 chr - 1872293 1872304 1.07e-06 0.102 AGTCCATACGCG
10-CGTCCATACGCG STREME-10 chr - 694149 694160 1.25e-06 0.102 GGTCCATACCCG
10-CGTCCATACGCG STREME-10 chr + 691653 691664 1.25e-06 0.102 GGTCCATACCCG
10-CGTCCATACGCG STREME-10 chr - 262628 262639 1.75e-06 0.11 GGTCCATACGGG
10-CGTCCATACGCG STREME-10 chr - 262628 262639 1.75e-06 0.11 GGTCCATACGGG
10-CGTCCATACGCG STREME-10 chr - 212293 212304 1.98e-06 0.11 CGTGCATACCCG
10-CGTCCATACGCG STREME-10 chr + 1721823 1721834 1.98e-06 0.11 CGTGCATACCCG
10-CGTCCATACGCG STREME-10 chr - 2389177 2389188 2.05e-06 0.11 CGTCCATACGAG
10-CGTCCATACGCG STREME-10 chr - 1603631 1603642 2.24e-06 0.11 CGTCCATACCTG
10-CGTCCATACGCG STREME-10 chr - 2094566 2094577 2.34e-06 0.11 CGTACATACACG
10-CGTCCATACGCG STREME-10 chr + 11521 11532 2.34e-06 0.11 CGTACATACACG
10-CGTCCATACGCG STREME-10 chr + 2200963 2200974 2.47e-06 0.11 CGTCCATACCCA
10-CGTCCATACGCG STREME-10 chr - 2544009 2544020 2.6e-06 0.11 CGTCCATACACC
10-CGTCCATACGCG STREME-10 chr + 866862 866873 2.6e-06 0.11 CGTGCATACACG
10-CGTCCATACGCG STREME-10 chr + 2104803 2104814 2.6e-06 0.11 CGTCCATACACC
10-CGTCCATACGCG STREME-10 chr + 2373551 2373562 2.6e-06 0.11 CGTCCATACACC
10-CGTCCATACGCG STREME-10 chr + 2816893 2816904 3.04e-06 0.123 CGTCCATGCGCG
10-CGTCCATACGCG STREME-10 chr - 2610678 2610689 3.23e-06 0.123 CGTCCATATCCG
10-CGTCCATACGCG STREME-10 chr + 1548104 1548115 3.23e-06 0.123 CGTCCATATCCG
10-CGTCCATACGCG STREME-10 chr - 2612053 2612064 3.5e-06 0.124 GGTCCATACGCC
10-CGTCCATACGCG STREME-10 chr + 721832 721843 3.5e-06 0.124 GGTCCATACGCC
10-CGTCCATACGCG STREME-10 chr + 1132472 1132483 3.6e-06 0.124 AGTCCATACGGG
10-CGTCCATACGCG STREME-10 chr - 1717965 1717976 4.08e-06 0.133 CGTCCATATGGG
10-CGTCCATACGCG STREME-10 chr - 1717965 1717976 4.08e-06 0.133 CGTCCATATGGG
10-CGTCCATACGCG STREME-10 chr + 1000099 1000110 4.48e-06 0.142 CGTACATACGCC
10-CGTCCATACGCG STREME-10 chr + 1026229 1026240 5.13e-06 0.156 CGTCGATACGCG
10-CGTCCATACGCG STREME-10 chr - 1657122 1657133 5.19e-06 0.156 CGTCCATACCCT
10-CGTCCATACGCG STREME-10 chr + 2005965 2005976 5.32e-06 0.156 GGTCCATATGCG
10-CGTCCATACGCG STREME-10 chr - 386647 386658 5.95e-06 0.158 CGTGCATACCGG
10-CGTCCATACGCG STREME-10 chr - 1355274 1355285 5.95e-06 0.158 CGTCCATACCGC
10-CGTCCATACGCG STREME-10 chr - 1567089 1567100 5.95e-06 0.158 CGTGCATACGTG
10-CGTCCATACGCG STREME-10 chr - 2380788 2380799 5.95e-06 0.158 CGTCCATACGTC
10-CGTCCATACGCG STREME-10 chr + 2221310 2221321 6.92e-06 0.179 GGTGCATACCCG
10-CGTCCATACGCG STREME-10 chr - 2801072 2801083 7.05e-06 0.179 CGTCCATACGGT
10-CGTCCATACGCG STREME-10 chr - 1684983 1684994 7.51e-06 0.179 CTTCCATACGCC
10-CGTCCATACGCG STREME-10 chr - 1908176 1908187 7.51e-06 0.179 CGTCCATATGCC
10-CGTCCATACGCG STREME-10 chr - 1908176 1908187 7.51e-06 0.179 CGTCCATATGCC
10-CGTCCATACGCG STREME-10 chr + 627900 627911 7.89e-06 0.184 CGTCCATGCACG
10-CGTCCATACGCG STREME-10 chr - 121704 121715 8.26e-06 0.185 CGTCCATGCGGG
10-CGTCCATACGCG STREME-10 chr - 1454013 1454024 8.26e-06 0.185 CGTCCATGCGGG
10-CGTCCATACGCG STREME-10 chr - 2122678 2122689 8.57e-06 0.188 CGTCCATATCGG
10-CGTCCATACGCG STREME-10 chr - 2283881 2283892 8.97e-06 0.193 GGTCCATACACC
10-CGTCCATACGCG STREME-10 chr - 1221060 1221071 9.16e-06 0.194 CGTGCATACTCG
10-CGTCCATACGCG STREME-10 chr - 310556 310567 9.81e-06 0.196 GGTCCATACGGC
10-CGTCCATACGCG STREME-10 chr + 1223827 1223838 9.81e-06 0.196 GGTCCATACGGC
10-CGTCCATACGCG STREME-10 chr - 1234816 1234827 9.96e-06 0.196 CGTGCATACCCC
10-CGTCCATACGCG STREME-10 chr + 2405836 2405847 9.96e-06 0.196 CGTGCATACCCC
10-CGTCCATACGCG STREME-10 chr + 1529129 1529140 1.04e-05 0.198 CGTCGATACCCG
10-CGTCCATACGCG STREME-10 chr + 1280081 1280092 1.04e-05 0.198 TGTACATACGCG
10-CGTCCATACGCG STREME-10 chr + 1956536 1956547 1.07e-05 0.201 CGTCCATACGAC
10-CGTCCATACGCG STREME-10 chr - 705711 705722 1.27e-05 0.231 TGTCCATACCGG
10-CGTCCATACGCG STREME-10 chr - 1163759 1163770 1.27e-05 0.231 AGTCCATACGAG
10-CGTCCATACGCG STREME-10 chr + 1377045 1377056 1.35e-05 0.236 CGTCGATACGGG
10-CGTCCATACGCG STREME-10 chr - 2841233 2841244 1.37e-05 0.236 CGTCCATACGAA
10-CGTCCATACGCG STREME-10 chr + 1853686 1853697 1.37e-05 0.236 CGTCCATACCGT
10-CGTCCATACGCG STREME-10 chr + 1696481 1696492 1.43e-05 0.244 AGTCCATACCTG
10-CGTCCATACGCG STREME-10 chr + 1418421 1418432 1.49e-05 0.246 CTTCCATACCCC
10-CGTCCATACGCG STREME-10 chr - 1994815 1994826 1.51e-05 0.246 GGTCCATTCGCG
10-CGTCCATACGCG STREME-10 chr + 855445 855456 1.51e-05 0.246 GGTCCATTCGCG
10-CGTCCATACGCG STREME-10 chr - 1885444 1885455 1.54e-05 0.247 CGTCCATACATC
10-CGTCCATACGCG STREME-10 chr - 778302 778313 1.58e-05 0.247 CGTACATACACA
10-CGTCCATACGCG STREME-10 chr + 1710475 1710486 1.58e-05 0.247 GGTCGATACGCG
10-CGTCCATACGCG STREME-10 chr - 2557862 2557873 1.6e-05 0.247 TTTCCATACGCG
10-CGTCCATACGCG STREME-10 chr + 941285 941296 1.65e-05 0.251 CGTCCATGCCGG
10-CGTCCATACGCG STREME-10 chr + 1535882 1535893 1.67e-05 0.251 AGTCCATGCGCG
10-CGTCCATACGCG STREME-10 chr - 400724 400735 1.71e-05 0.254 AGTCCATATCCG
10-CGTCCATACGCG STREME-10 chr + 2307467 2307478 1.77e-05 0.259 GGTCCATACGTC
10-CGTCCATACGCG STREME-10 chr + 1064871 1064882 1.84e-05 0.266 CGTACACACGCG
10-CGTCCATACGCG STREME-10 chr + 737854 737865 1.96e-05 0.28 CGTCCATACCAC
10-CGTCCATACGCG STREME-10 chr - 295923 295934 1.99e-05 0.281 CGTAGATACGCG
10-CGTCCATACGCG STREME-10 chr - 2846692 2846703 2.09e-05 0.284 CCTCCATACGCC
10-CGTCCATACGCG STREME-10 chr - 2846692 2846703 2.09e-05 0.284 CCTCCATACGCC
10-CGTCCATACGCG STREME-10 chr + 2284464 2284475 2.11e-05 0.284 CGTCCATGCAGG
10-CGTCCATACGCG STREME-10 chr - 1195272 1195283 2.19e-05 0.284 GTTCCATACGCC
10-CGTCCATACGCG STREME-10 chr + 1828154 1828165 2.19e-05 0.284 GTTCCATACGCC
10-CGTCCATACGCG STREME-10 chr - 525672 525683 2.2e-05 0.284 GGTCCATACCGA
10-CGTCCATACGCG STREME-10 chr - 913047 913058 2.2e-05 0.284 GGTCCATACCGA
10-CGTCCATACGCG STREME-10 chr + 756838 756849 2.25e-05 0.284 GGTGCATACAGG
10-CGTCCATACGCG STREME-10 chr + 1584584 1584595 2.26e-05 0.284 CGTCCATACGAT
10-CGTCCATACGCG STREME-10 chr + 2437000 2437011 2.26e-05 0.284 CGTACATACGTC
10-CGTCCATACGCG STREME-10 chr + 1214647 1214658 2.34e-05 0.29 CGTCCATTCCGG
10-CGTCCATACGCG STREME-10 chr - 993592 993603 2.44e-05 0.3 ACTCCATACGCG
10-CGTCCATACGCG STREME-10 chr - 357264 357275 2.49e-05 0.301 GGTCCATGCGGG
10-CGTCCATACGCG STREME-10 chr + 2840539 2840550 2.5e-05 0.301 CGTCCACACGCA
10-CGTCCATACGCG STREME-10 chr + 855435 855446 2.61e-05 0.307 GTTCCATACCGG
10-CGTCCATACGCG STREME-10 chr + 575462 575473 2.63e-05 0.307 TGTCCATACACC
10-CGTCCATACGCG STREME-10 chr + 1781143 1781154 2.66e-05 0.307 GGTACATACCCC
10-CGTCCATACGCG STREME-10 chr + 1619649 1619660 2.67e-05 0.307 GGTGCATACTCG
10-CGTCCATACGCG STREME-10 chr - 726726 726737 2.74e-05 0.307 CGTCCATGCGAG
10-CGTCCATACGCG STREME-10 chr - 872715 872726 2.74e-05 0.307 CGTCCATGCGAG
10-CGTCCATACGCG STREME-10 chr - 135023 135034 2.79e-05 0.307 TGTCCATGCGCG
10-CGTCCATACGCG STREME-10 chr + 2699348 2699359 2.79e-05 0.307 TGTCCATGCGCG
10-CGTCCATACGCG STREME-10 chr - 2828192 2828203 2.82e-05 0.307 CTTCCACACGCG
10-CGTCCATACGCG STREME-10 chr + 1412552 1412563 2.82e-05 0.307 GGTCGATACCCG
10-CGTCCATACGCG STREME-10 chr - 658852 658863 3.02e-05 0.322 CTTCGATACGCG
10-CGTCCATACGCG STREME-10 chr + 1761319 1761330 3.03e-05 0.322 CGTACATGCACG
10-CGTCCATACGCG STREME-10 chr + 946249 946260 3.07e-05 0.322 GTTCCATATGCG
10-CGTCCATACGCG STREME-10 chr + 952842 952853 3.08e-05 0.322 CGTCGATACAGG
10-CGTCCATACGCG STREME-10 chr + 1316380 1316391 3.17e-05 0.329 CGTACATATCGG
10-CGTCCATACGCG STREME-10 chr - 2551323 2551334 3.51e-05 0.346 GGTCCATTCGGG
10-CGTCCATACGCG STREME-10 chr - 606481 606492 3.58e-05 0.346 CGTCCATGTCCG
10-CGTCCATACGCG STREME-10 chr - 2337539 2337550 3.58e-05 0.346 CGTCCATGTCCG
10-CGTCCATACGCG STREME-10 chr - 2623366 2623377 3.58e-05 0.346 CGTCCATGTCCG
10-CGTCCATACGCG STREME-10 chr + 458656 458667 3.58e-05 0.346 CGTCGATACTCG
10-CGTCCATACGCG STREME-10 chr - 2062853 2062864 3.65e-05 0.346 CGTCCATAGCCC
10-CGTCCATACGCG STREME-10 chr + 583861 583872 3.65e-05 0.346 CCTGCATACCCG
10-CGTCCATACGCG STREME-10 chr + 1269282 1269293 3.65e-05 0.346 CGTGCATAGCCG
10-CGTCCATACGCG STREME-10 chr + 1402484 1402495 3.65e-05 0.346 CGTGCATAGCCG
10-CGTCCATACGCG STREME-10 chr - 1652545 1652556 3.67e-05 0.346 TGTCCATATACG
10-CGTCCATACGCG STREME-10 chr - 2700594 2700605 3.67e-05 0.346 AGTCCATACGTA
10-CGTCCATACGCG STREME-10 chr + 1543992 1544003 3.74e-05 0.349 GGTCCATACCGT
10-CGTCCATACGCG STREME-10 chr - 2707600 2707611 3.81e-05 0.354 GGTCCATGCGCC
10-CGTCCATACGCG STREME-10 chr - 871187 871198 3.91e-05 0.354 GTTGCATACCCG
10-CGTCCATACGCG STREME-10 chr - 1806691 1806702 3.91e-05 0.354 GGTGCATATCCG
10-CGTCCATACGCG STREME-10 chr - 2049723 2049734 3.91e-05 0.354 GTTCCATACCCC
10-CGTCCATACGCG STREME-10 chr - 993041 993052 4.01e-05 0.359 CGTACATACCTC
10-CGTCCATACGCG STREME-10 chr + 2107315 2107326 4.03e-05 0.359 CGTGCATACTTG
10-CGTCCATACGCG STREME-10 chr - 286678 286689 4.12e-05 0.364 CGTCCATGCGGA
10-CGTCCATACGCG STREME-10 chr + 496385 496396 4.36e-05 0.38 CGTCCATGTACG
10-CGTCCATACGCG STREME-10 chr + 1090154 1090165 4.36e-05 0.38 AGTACATACGAG
10-CGTCCATACGCG STREME-10 chr - 1402613 1402624 4.4e-05 0.38 GTTCCATACCTG
10-CGTCCATACGCG STREME-10 chr + 1870054 1870065 4.79e-05 0.411 CTTCCATATGTG
10-CGTCCATACGCG STREME-10 chr - 449221 449232 4.93e-05 0.419 CGTCGATACGGC
10-CGTCCATACGCG STREME-10 chr - 795537 795548 4.97e-05 0.419 CGTGCATACCGT
10-CGTCCATACGCG STREME-10 chr + 1690549 1690560 5.06e-05 0.419 CCTCCATATCCG
10-CGTCCATACGCG STREME-10 chr - 696778 696789 5.12e-05 0.419 CGTCCATACAAT
10-CGTCCATACGCG STREME-10 chr + 1708546 1708557 5.12e-05 0.419 CGTCCATGCCCT
10-CGTCCATACGCG STREME-10 chr + 956902 956913 5.16e-05 0.419 GGTCCACACGCC
10-CGTCCATACGCG STREME-10 chr - 1072685 1072696 5.19e-05 0.419 CTTGCATACCCC
10-CGTCCATACGCG STREME-10 chr - 1158314 1158325 5.26e-05 0.419 CGTCGATATCCG
10-CGTCCATACGCG STREME-10 chr - 1671902 1671913 5.26e-05 0.419 GTTCCATGCGCG
10-CGTCCATACGCG STREME-10 chr + 494552 494563 5.26e-05 0.419 CGTCGATATCCG
10-CGTCCATACGCG STREME-10 chr - 1436427 1436438 5.29e-05 0.419 GGTCCATTCGCC
10-CGTCCATACGCG STREME-10 chr - 399542 399553 5.34e-05 0.419 GCTGCATACGCG
10-CGTCCATACGCG STREME-10 chr - 2641362 2641373 5.37e-05 0.419 ACTCCATACACG
10-CGTCCATACGCG STREME-10 chr - 1453949 1453960 5.47e-05 0.424 GGTCGATACGCC
10-CGTCCATACGCG STREME-10 chr - 172011 172022 5.5e-05 0.424 AGTCCATTCGGG
10-CGTCCATACGCG STREME-10 chr - 1123528 1123539 5.65e-05 0.428 CGTCCATGCGTC
10-CGTCCATACGCG STREME-10 chr - 2814750 2814761 5.65e-05 0.428 CGTCCATGCGTC
10-CGTCCATACGCG STREME-10 chr - 150240 150251 5.66e-05 0.428 AGTACATATCCG
10-CGTCCATACGCG STREME-10 chr - 1173831 1173842 5.82e-05 0.431 CTTCCATACCTC
10-CGTCCATACGCG STREME-10 chr - 2528412 2528423 5.9e-05 0.431 CGTCGATACGGA
10-CGTCCATACGCG STREME-10 chr + 2015936 2015947 5.9e-05 0.431 ATTCCATACCCC
10-CGTCCATACGCG STREME-10 chr + 2015936 2015947 5.9e-05 0.431 ATTCCATACCCC
10-CGTCCATACGCG STREME-10 chr + 2272053 2272064 5.9e-05 0.431 GGTCCATTCGTG
10-CGTCCATACGCG STREME-10 chr - 309409 309420 5.97e-05 0.434 GGTCCATGCTCG
10-CGTCCATACGCG STREME-10 chr - 2412365 2412376 6.09e-05 0.44 CGTCCACATGGG
10-CGTCCATACGCG STREME-10 chr + 1137062 1137073 6.44e-05 0.457 TGTGCATACTCG
10-CGTCCATACGCG STREME-10 chr - 630601 630612 6.58e-05 0.457 CGTACATGCAGG
10-CGTCCATACGCG STREME-10 chr - 2513133 2513144 6.58e-05 0.457 CGTCCATTGGCG
10-CGTCCATACGCG STREME-10 chr - 318611 318622 6.63e-05 0.457 CGTCGACACGCG
10-CGTCCATACGCG STREME-10 chr + 1842852 1842863 6.7e-05 0.457 CGTCGATACCAG
10-CGTCCATACGCG STREME-10 chr - 2625005 2625016 6.72e-05 0.457 CGTCCACACCCT
10-CGTCCATACGCG STREME-10 chr + 809972 809983 6.76e-05 0.457 CGTCCATCCGCG
10-CGTCCATACGCG STREME-10 chr + 1527502 1527513 6.8e-05 0.457 CGTGCATACTCT
10-CGTCCATACGCG STREME-10 chr - 566277 566288 6.83e-05 0.457 CGTCGATTCGCG
10-CGTCCATACGCG STREME-10 chr - 1021356 1021367 6.83e-05 0.457 CGTCGATTCGCG
10-CGTCCATACGCG STREME-10 chr - 1997749 1997760 6.83e-05 0.457 CGTCGATTCGCG
10-CGTCCATACGCG STREME-10 chr + 2344984 2344995 6.83e-05 0.457 CGTCGATTCGCG
10-CGTCCATACGCG STREME-10 chr - 1243748 1243759 6.88e-05 0.457 CGTCGATAGGCG
10-CGTCCATACGCG STREME-10 chr - 1691291 1691302 6.88e-05 0.457 CGTCGATAGGCG
10-CGTCCATACGCG STREME-10 chr - 702576 702587 7.15e-05 0.469 CGTCGATACCCT
10-CGTCCATACGCG STREME-10 chr - 911602 911613 7.15e-05 0.469 CGTCGATACCCT
10-CGTCCATACGCG STREME-10 chr - 1563330 1563341 7.5e-05 0.486 CGTCCACACGTC
10-CGTCCATACGCG STREME-10 chr + 2293544 2293555 7.5e-05 0.486 CGTCCACACCGC
10-CGTCCATACGCG STREME-10 chr + 138049 138060 7.79e-05 0.486 CGTCCACGCCCG
10-CGTCCATACGCG STREME-10 chr + 1089677 1089688 7.79e-05 0.486 GGTCCATGCACC
10-CGTCCATACGCG STREME-10 chr + 1717713 1717724 7.79e-05 0.486 CGTCCACGCCCG
10-CGTCCATACGCG STREME-10 chr + 1824880 1824891 7.79e-05 0.486 TGTGCATACCTG
10-CGTCCATACGCG STREME-10 chr - 1311390 1311401 7.89e-05 0.486 CGTACATGCCCC
10-CGTCCATACGCG STREME-10 chr + 1816615 1816626 7.89e-05 0.486 CCTGCATACCGG
10-CGTCCATACGCG STREME-10 chr + 1816615 1816626 7.89e-05 0.486 CCTGCATACCGG
10-CGTCCATACGCG STREME-10 chr + 2161866 2161877 8.03e-05 0.486 GTTCCATACTGG
10-CGTCCATACGCG STREME-10 chr - 935509 935520 8.1e-05 0.486 CGTCCATGGCCG
10-CGTCCATACGCG STREME-10 chr - 935509 935520 8.1e-05 0.486 CGTCCATGGCCG
10-CGTCCATACGCG STREME-10 chr + 1459184 1459195 8.1e-05 0.486 CGTCCATGGCCG
10-CGTCCATACGCG STREME-10 chr - 637687 637698 8.19e-05 0.486 CGTCGATACGTC
10-CGTCCATACGCG STREME-10 chr - 2046904 2046915 8.19e-05 0.486 CGTCGATACCGC
10-CGTCCATACGCG STREME-10 chr - 234151 234162 8.21e-05 0.486 ATTCCATATCCG
10-CGTCCATACGCG STREME-10 chr + 2205518 2205529 8.25e-05 0.486 CGTGCATGCCCC
10-CGTCCATACGCG STREME-10 chr + 1480322 1480333 8.25e-05 0.486 TGTCCATAGACG
10-CGTCCATACGCG STREME-10 chr + 2011823 2011834 8.25e-05 0.486 TCTCCATACACG
10-CGTCCATACGCG STREME-10 chr - 136119 136130 8.35e-05 0.486 CGTCGATGCCCG
10-CGTCCATACGCG STREME-10 chr - 490284 490295 8.43e-05 0.486 GGTCCATATGTC
10-CGTCCATACGCG STREME-10 chr - 490284 490295 8.43e-05 0.486 GGTCCATATGTC
10-CGTCCATACGCG STREME-10 chr + 1263748 1263759 8.43e-05 0.486 GTTCCATACCGC
10-CGTCCATACGCG STREME-10 chr - 1412563 1412574 8.43e-05 0.486 GTTCCATACGTC
10-CGTCCATACGCG STREME-10 chr - 858867 858878 8.62e-05 0.494 CGTACATATCAG
10-CGTCCATACGCG STREME-10 chr + 306231 306242 8.72e-05 0.494 GCTCCATACCCC
10-CGTCCATACGCG STREME-10 chr + 2054963 2054974 8.72e-05 0.494 GCTCCATACCCC
10-CGTCCATACGCG STREME-10 chr - 805438 805449 8.75e-05 0.494 CGTCCATGCGAC
10-CGTCCATACGCG STREME-10 chr + 2400576 2400587 9e-05 0.504 GGTCCACACGAG
10-CGTCCATACGCG STREME-10 chr + 2788173 2788184 9.01e-05 0.504 CTTGCATACCAG
10-CGTCCATACGCG STREME-10 chr - 2088981 2088992 9.15e-05 0.505 TGTGCATATCCG
10-CGTCCATACGCG STREME-10 chr - 2533900 2533911 9.15e-05 0.505 GGTCCATTCGAG
10-CGTCCATACGCG STREME-10 chr - 1818564 1818575 9.21e-05 0.505 CGTCCACACCGA
10-CGTCCATACGCG STREME-10 chr - 2181833 2181844 9.21e-05 0.505 CGTCCACACCGA
10-CGTCCATACGCG STREME-10 chr + 797364 797375 9.49e-05 0.516 GGTCGATACGAG
10-CGTCCATACGCG STREME-10 chr + 2731612 2731623 9.59e-05 0.516 CGTGCATATCCT
10-CGTCCATACGCG STREME-10 chr - 1331398 1331409 9.6e-05 0.516 GGTGCATACTTG
10-CGTCCATACGCG STREME-10 chr - 986354 986365 9.7e-05 0.516 CGTCGATACCGA
10-CGTCCATACGCG STREME-10 chr + 1296110 1296121 9.7e-05 0.516 GGTCCATTCGCT
10-CGTCCATACGCG STREME-10 chr + 221787 221798 9.78e-05 0.516 CGTCCACGCGGG
10-CGTCCATACGCG STREME-10 chr + 469116 469127 9.78e-05 0.516 CGTCCACGCGGG
10-CGTCCATACGCG STREME-10 chr + 522148 522159 9.78e-05 0.516 CGTCCACGCGGG
10-CGTCCATACGCG STREME-10 chr + 601841 601852 9.91e-05 0.516 GGTCCATATCGA
10-CGTCCATACGCG STREME-10 chr - 937949 937960 9.91e-05 0.516 CGTCGATGCACG
10-CGTCCATACGCG STREME-10 chr - 1401778 1401789 9.91e-05 0.516 TGTCCATGCCGG
DEBUGGING INFORMATION

Command line: 

fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_2 --bgfile ./background --motif 10-CGTCCATACGCG streme_out/streme.xml ./all.fixed.TSS-100bp.fa

Settings: 


  

    output_directory = fimo_out_2
    MEME file name = streme_out/streme.xml
    sequence file name = ./all.fixed.TSS-100bp.fa
  
  

    background file name = ./background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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