python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-GSE147228-GSM4421231-Akata-CLASH-1/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-GSE147228-GSM4421231-Akata-CLASH-1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-GSE147228-GSM4421232-Akata-CLASH-2/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-GSE147228-GSM4421232-Akata-CLASH-2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-GSE147228-GSM4421233-Akata-CLASH-3/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-GSE147228-GSM4421233-Akata-CLASH-3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-GSE41437-GSM1020021-Ago2-FLAG-PAR-CLIP/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-GSE41437-GSM1020021-Ago2-FLAG-PAR-CLIP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-GSE41437-GSM1020022-Ago2-PAR-CLIP/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-GSE41437-GSM1020022-Ago2-PAR-CLIP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-GSE41437-GSM1020023-Ago2-PAR-CLIP/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-GSE41437-GSM1020023-Ago2-PAR-CLIP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_Ago2_Sample_mRNA4_in_paper/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_Ago2_Sample_mRNA4_in_paper -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_Ago2_Sample_mRNA5_in_paper/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_Ago2_Sample_mRNA5_in_paper -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_Ago2_Sample_mRNA6_in_paper/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_Ago2_Sample_mRNA6_in_paper -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_panAgo_Sample_mRNA1_in_paper/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_panAgo_Sample_mRNA1_in_paper -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_panAgo_Sample_mRNA2_in_paper/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_panAgo_Sample_mRNA2_in_paper -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_panAgo_Sample_mRNA3_in_paper/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-STAR-hg38-PRJNA309583-HITS-CLIP_of_Jijoye_Cells_panAgo_Sample_mRNA3_in_paper -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes ~/programs/samtools-0.1.19/samtools -paired