python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_60min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_0min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_30min.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep1.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2019_01_16_60min_Diamide-rep2.pseudoRep1 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-50bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 100 10000 100 tabix NMI.min100.ss100.TSS-upstream200bp.bed.chrXVIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 100 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_07_05_Diamide_60min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_0min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_09_13_Diamide_30min.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018_12_13_0h_Diamide_additional_reads.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018_12_13_0h_Diamide_additional_reads.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_07_05-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_07_05-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2018-12-13+2018_09_13-0h_Diamide.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2018-12-13+2018_09_13-0h_Diamide.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-50bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-50bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream100bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream100bp.bed.chrXVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrIX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrM.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrVIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrX.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXI.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIII.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-empirical-quantiles.py 2019_01_16_60min_Diamide-rep2.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.pseudoRep2.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI 0 1 2 50 10000 100 tabix NMI.min50.ss100.TSS-upstream200bp.bed.chrXVIV.2019_01_16_60min_Diamide-rep2.pseudoRep2 -subsample 50 -quantiles 5