Index of /kundaje/marinovg/oak/papers/2020_SMAC-seq-yeast/2018-05-14-plots

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2018-08-25-filtering-titration-chrI.tar.gz2019-10-31 10:55 2.2G 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.ABF1-vs-ChIP-exo-intersection12018-06-18 21:43 14K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.ABF1-vs-ChIP-exo-intersection1.+2018-06-19 10:58 6.8K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.ABF1-vs-ChIP-exo-intersection1.-2018-06-19 10:58 7.6K 
[ ]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.ABF1.gz2018-06-18 21:42 27K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.CBF1-vs-ChIP-exo-intersection12018-06-18 21:43 12K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.CBF1-vs-ChIP-exo-intersection1.+2018-06-19 10:58 5.1K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.CBF1-vs-ChIP-exo-intersection1.-2018-06-19 10:58 6.5K 
[ ]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.CBF1.gz2018-06-18 21:42 7.9K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.RAP1-vs-ChIP-exo-intersection12018-06-18 21:43 21K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.RAP1-vs-ChIP-exo-intersection1.+2018-06-19 10:58 10K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.RAP1-vs-ChIP-exo-intersection1.-2018-06-19 10:58 10K 
[ ]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.RAP1.gz2018-06-18 21:42 42K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.REB1-vs-ChIP-exo-intersection12018-06-18 21:43 40K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.REB1-vs-ChIP-exo-intersection1.+2018-06-19 10:58 19K 
[TXT]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.REB1-vs-ChIP-exo-intersection1.-2018-06-19 10:58 21K 
[ ]FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.REB1.gz2018-06-18 21:42 21K 
[ ]FIMO-HAP1-vs-Hap1p.all.GPS_events.25bp-radius-intersection12018-09-18 14:12 5.3K 
[ ]FIMO-HAP1-vs-Hap1p.all.GPS_events.25bp-radius-intersection1.+2018-09-18 14:15 3.1K 
[ ]FIMO-HAP1-vs-Hap1p.all.GPS_events.25bp-radius-intersection1.-2018-09-18 14:15 2.2K 
[ ]FIMO-INO2-vs-Ino2p.all.GPS_events.25bp-radius-intersection12018-09-18 14:12 12K 
[ ]FIMO-INO2-vs-Ino2p.all.GPS_events.25bp-radius-intersection1.+2018-09-18 14:15 6.0K 
[ ]FIMO-INO2-vs-Ino2p.all.GPS_events.25bp-radius-intersection1.-2018-09-18 14:15 6.0K 
[ ]FIMO-INO4-vs-Ino4p.all.GPS_events.25bp-radius-intersection12018-09-18 14:12 12K 
[ ]FIMO-INO4-vs-Ino4p.all.GPS_events.25bp-radius-intersection1.+2018-09-18 14:15 6.1K 
[ ]FIMO-INO4-vs-Ino4p.all.GPS_events.25bp-radius-intersection1.-2018-09-18 14:15 5.6K 
[ ]FIMO-OAF1-vs-Oaf1p.all.GPS_events.25bp-radius-intersection12018-09-18 14:12 3.5K 
[ ]FIMO-OAF1-vs-Oaf1p.all.GPS_events.25bp-radius-intersection1.+2018-09-18 14:15 1.5K 
[ ]FIMO-OAF1-vs-Oaf1p.all.GPS_events.25bp-radius-intersection1.-2018-09-18 14:15 2.0K 
[ ]Hap1p.all.1x25mers.unique.GPS.GPS_events.25bp-radius.bed2018-09-18 14:09 174K 
[ ]Ino2p.all.1x25mers.unique.GPS.GPS_events.25bp-radius.bed2018-09-18 14:09 293K 
[ ]Ino4p.all.1x25mers.unique.GPS.GPS_events.25bp-radius.bed2018-09-18 14:09 259K 
[TXT]JSD-heatmaps.sh2018-08-23 17:59 491K 
[ ]NMI-filtered-0.75.50cov_10bp_500bp.list2018-10-05 09:05 75K 
[ ]NMI-filtered-0.75.50cov_20bp_500bp.list2018-10-05 09:05 75K 
[ ]NMI-filtered-0.75.50cov_20bp_500bp.metagene2018-10-05 10:56 17K 
[ ]NMI-filtered-0.75.50cov_20bp_500bp.metagene.quantile12018-10-05 11:06 17K 
[ ]NMI-filtered-0.75.50cov_20bp_500bp.metagene.quantile52018-10-05 10:53 17K 
[ ]NMI-filtered-0.75.50cov_50bp_1000bp.list2018-10-05 09:05 76K 
[ ]NMI-filtered-0.75.50cov_50bp_1000bp.metagene2018-10-05 10:12 3.1K 
[ ]NMI-filtered-0.75.50cov_50bp_1000bp.metagene.quantile12018-10-05 10:12 3.1K 
[ ]NMI-filtered-0.75.50cov_50bp_1000bp.metagene.quantile52018-10-05 10:12 3.1K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.list2018-10-05 08:42 76K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metagene2018-10-05 11:55 72K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metagene.0.03.binary.png2018-10-05 12:42 14K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metagene.0.06.binary.png2018-10-05 12:40 14K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metagene.quantile12018-10-05 11:52 72K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metagene.quantile1.0.03.binary.png2018-10-05 12:42 16K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metagene.quantile1.0.06.binary.png2018-10-05 12:40 17K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metagene.quantile52018-10-05 11:55 72K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metagene.quantile5.0.03.binary.png2018-10-05 12:42 16K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metagene.quantile5.0.06.binary.png2018-10-05 12:40 17K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-2kb2018-10-05 15:19 786K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-2kb.chrIX2018-10-05 12:59 786K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-2kb.chrIX.0.01-0.02.binary.png2018-10-05 13:02 84K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-3kb.chrIX2018-10-05 13:00 1.7M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-3kb.chrIX.0.01-0.02.binary.png2018-10-05 13:03 149K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-4kb.chrIX2018-10-05 13:01 3.1M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-4kb.chrIX.0.01-0.02.binary.png2018-10-05 13:03 242K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-5kb.chrIX2018-10-05 13:02 4.7M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-5kb.chrIX.0.01-0.02.binary.png2018-10-05 13:03 307K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-6kb.chrIX2018-10-05 13:02 6.7M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-6kb.chrIX.0.01-0.02.binary.png2018-10-05 13:04 279K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-7kb.chrIX2018-10-05 13:04 9.0M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-bottom10p-7kb.chrIX.0.01-0.02.binary.png2018-10-05 13:05 257K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb2018-10-05 12:35 786K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.-0.02-0.02.bwr.png2018-10-05 12:02 116K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.-0.03-0.03.bwr.png2018-10-05 12:02 118K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.01-0.02.binary.png2018-10-05 12:05 89K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.01-0.03.YlOrRd.png2018-10-05 11:58 118K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.01-0.03.binary.png2018-10-05 12:05 96K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.01-0.03.bwr.png2018-10-05 11:59 95K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.01-0.03.hot.png2018-10-05 11:59 99K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.01.binary.png2018-10-05 12:05 59K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.015-0.03.binary.png2018-10-05 12:05 31K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.02.binary.png2018-10-05 12:05 115K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.0.03.binary.png2018-10-05 11:55 118K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.chrIX2018-10-05 12:41 786K 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-2kb.chrIX.0.01-0.02.binary.png2018-10-05 12:44 85K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-3kb.chrIX2018-10-05 12:42 1.7M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-3kb.chrIX.0.01-0.02.binary.png2018-10-05 12:44 154K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-4kb.chrIX2018-10-05 12:42 3.1M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-4kb.chrIX.0.01-0.02.binary.png2018-10-05 12:44 247K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-5kb.chrIX2018-10-05 12:52 4.7M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-5kb.chrIX.0.01-0.02.binary.png2018-10-05 12:55 324K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-6kb.chrIX2018-10-05 12:53 6.7M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-6kb.chrIX.0.01-0.02.binary.png2018-10-05 12:55 290K 
[ ]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-7kb.chrIX2018-10-05 12:54 9.0M 
[IMG]NMI-filtered-0.75.100cov_10bp_500bp.metanucleosome-top10p-7kb.chrIX.0.01-0.02.binary.png2018-10-05 12:56 262K 
[ ]NMI-filtered-0.75.100cov_20bp_500bp.list2018-10-05 08:42 76K 
[ ]NMI-filtered-0.75.100cov_20bp_500bp.metagene2018-10-05 10:34 17K 
[ ]NMI-filtered-0.75.100cov_20bp_500bp.metagene.quantile12018-10-05 10:34 17K 
[ ]NMI-filtered-0.75.100cov_20bp_500bp.metagene.quantile52018-10-05 10:33 17K 
[ ]NMI-filtered-0.75.100cov_50bp_1000bp.list2018-10-05 08:42 77K 
[ ]NMI-filtered-0.75.100cov_50bp_1000bp.metagene2018-10-05 10:10 3.1K 
[ ]NMI-filtered-0.75.100cov_50bp_1000bp.metagene.quantile12018-10-05 10:10 3.1K 
[ ]NMI-filtered-0.75.100cov_50bp_1000bp.metagene.quantile52018-10-05 10:10 3.1K 
[TXT]NMI-heatmaps.sh2018-08-22 20:13 676K 
[TXT]NMI-matrix.filtered_1kb_0.75-heatmaps.sh2018-09-14 09:48 1.4M 
[TXT]NMI-matrix.filtered_1kb_0.75.sh2018-08-27 02:24 2.0M 
[ ]NMI.100cov_10bp_500bp.chrXII_430000_4800002018-09-21 22:33 98M 
[ ]NMI.100cov_10bp_500bp.chrXII_440000_4900002018-09-22 04:20 98M 
[ ]NMI.100cov_10bp_500bp.chrXII_450000_5000002018-09-22 01:04 98M 
[ ]NMI.100cov_10bp_500bp.list2018-08-17 07:18 55K 
[ ]NMI.100cov_10bp_500bp.metagene2018-08-17 14:17 72K 
[ ]NMI.100cov_10bp_500bp.metagene.quantile12018-08-17 14:27 72K 
[ ]NMI.100cov_10bp_500bp.metagene.quantile52018-08-17 14:20 72K 
[ ]NMI.100cov_20bp_500bp.list2018-08-17 06:58 55K 
[ ]NMI.100cov_20bp_500bp.metagene2018-08-17 12:47 17K 
[ ]NMI.100cov_20bp_500bp.metagene.quantile12018-08-17 12:46 17K 
[ ]NMI.100cov_20bp_500bp.metagene.quantile52018-08-17 12:47 17K 
[ ]NMI.100cov_50bp_1000bp.list2018-08-10 15:06 57K 
[ ]NMI.100cov_50bp_1000bp.metagene2018-08-10 15:13 3.1K 
[ ]NMI.telo_100cov_25bp_500bp.chrI_500_85002018-08-08 15:27 444K 
[ ]NMI.telo_100cov_25bp_500bp.chrI_8000_160002018-08-08 16:19 441K 
[ ]NMI.telo_100cov_50bp_10bp.chrI_500_85002018-08-08 15:21 0  
[ ]NMI.telo_100cov_50bp_10bp.chrI_8000_160002018-08-08 19:39 112K 
[ ]NMI.telo_100cov_50bp_1000bp.chrI_500_85002018-08-08 15:22 110K 
[ ]NMI.telo_100cov_50bp_1000bp.chrI_8000_160002018-08-08 16:13 111K 
[ ]Oaf1p.all.1x25mers.unique.GPS.GPS_events.25bp-radius.bed2018-09-18 14:09 121K 
[ ]ReadsTSVPerBaseMethylationStats-20180515_Yeast_Run-tombo_denovo_1.3.CG2018-08-26 12:55 3.1K 
[ ]ReadsTSVPerBaseMethylationStats-20180515_Yeast_Run-tombo_denovo_1.3.GC2018-08-26 12:56 3.1K 
[ ]ReadsTSVPerBaseMethylationStats-20180515_Yeast_Run-tombo_denovo_1.3.all2018-08-26 13:03 3.2K 
[ ]ReadsTSVPerBaseMethylationStats-20180515_Yeast_Run-tombo_denovo_1.3.all.filtered_1kb_0.752018-08-26 13:02 3.2K 
[ ]ReadsTSVPerBaseMethylationStats-20180515_Yeast_Run-tombo_denovo_1.3.m6A-only2018-08-26 13:02 3.2K 
[ ]SGD-saccharomyces_cerevisiae.ARS.bed2018-08-21 12:00 69K 
[ ]SGD-saccharomyces_cerevisiae.ARS.gff2018-08-21 11:53 73K 
[ ]SGD-saccharomyces_cerevisiae.ARS_consensus_sequence.bed2018-08-21 12:00 22K 
[ ]SGD-saccharomyces_cerevisiae.ARS_consensus_sequence.gff2018-08-21 11:53 28K 
[ ]SGD-saccharomyces_cerevisiae.LTR_retrotransposon.bed2018-08-21 12:00 24K 
[ ]SGD-saccharomyces_cerevisiae.LTR_retrotransposon.ext500bp.bed2018-08-21 12:46 24K 
[ ]SGD-saccharomyces_cerevisiae.LTR_retrotransposon.gff2018-08-21 11:53 25K 
[ ]SGD-saccharomyces_cerevisiae.W_region.bed2018-08-21 12:00 167  
[ ]SGD-saccharomyces_cerevisiae.W_region.gff2018-08-21 11:53 201  
[ ]SGD-saccharomyces_cerevisiae.X_element.bed2018-08-21 12:00 2.6K 
[ ]SGD-saccharomyces_cerevisiae.X_element.gff2018-08-21 11:53 3.2K 
[ ]SGD-saccharomyces_cerevisiae.X_element_combinatorial_repeat.bed2018-08-21 12:00 3.4K 
[ ]SGD-saccharomyces_cerevisiae.X_element_combinatorial_repeat.gff2018-08-21 11:53 4.5K 
[ ]SGD-saccharomyces_cerevisiae.X_region.bed2018-08-21 12:00 252  
[ ]SGD-saccharomyces_cerevisiae.X_region.gff2018-08-21 11:53 303  
[ ]SGD-saccharomyces_cerevisiae.Y_prime_element.bed2018-08-21 12:00 1.8K 
[ ]SGD-saccharomyces_cerevisiae.Y_prime_element.gff2018-08-21 11:53 2.2K 
[ ]SGD-saccharomyces_cerevisiae.Y_region.bed2018-08-21 12:00 252  
[ ]SGD-saccharomyces_cerevisiae.Y_region.gff2018-08-21 11:54 303  
[ ]SGD-saccharomyces_cerevisiae.Z1_region.bed2018-08-21 12:00 255  
[ ]SGD-saccharomyces_cerevisiae.Z1_region.gff2018-08-21 11:54 309  
[ ]SGD-saccharomyces_cerevisiae.Z2_region.bed2018-08-21 12:00 169  
[ ]SGD-saccharomyces_cerevisiae.Z2_region.gff2018-08-21 11:54 205  
[ ]SGD-saccharomyces_cerevisiae.external_transcribed_spacer_region.bed2018-08-21 12:00 856  
[ ]SGD-saccharomyces_cerevisiae.external_transcribed_spacer_region.gff2018-08-21 11:54 1.2K 
[ ]SGD-saccharomyces_cerevisiae.internal_transcribed_spacer_region.bed2018-08-21 12:00 856  
[ ]SGD-saccharomyces_cerevisiae.internal_transcribed_spacer_region.gff2018-08-21 11:54 1.2K 
[ ]SGD-saccharomyces_cerevisiae.intron.bed2018-08-21 12:00 33K 
[ ]SGD-saccharomyces_cerevisiae.intron.gff2018-08-21 11:54 39K 
[ ]SGD-saccharomyces_cerevisiae.long_terminal_repeat.bed2018-08-21 12:00 50K 
[ ]SGD-saccharomyces_cerevisiae.long_terminal_repeat.gff2018-08-21 11:54 61K 
[ ]SGD-saccharomyces_cerevisiae.mating_type_region.bed2018-08-21 12:00 253  
[ ]SGD-saccharomyces_cerevisiae.mating_type_region.gff2018-08-21 11:54 280  
[ ]SGD-saccharomyces_cerevisiae.matrix_attachment_site.bed2018-08-21 12:00 4.1K 
[ ]SGD-saccharomyces_cerevisiae.matrix_attachment_site.ext3kb.bed2018-08-21 12:46 4.1K 
[ ]SGD-saccharomyces_cerevisiae.matrix_attachment_site.gff2018-08-21 11:54 4.3K 
[ ]SGD-saccharomyces_cerevisiae.ncRNA_gene.bed2018-08-21 12:00 6.8K 
[ ]SGD-saccharomyces_cerevisiae.ncRNA_gene.gff2018-08-21 11:54 7.2K 
[ ]SGD-saccharomyces_cerevisiae.non_transcribed_region.bed2018-08-21 12:00 932  
[ ]SGD-saccharomyces_cerevisiae.non_transcribed_region.gff2018-08-21 11:54 1.0K 
[ ]SGD-saccharomyces_cerevisiae.origin_of_replication.bed2018-08-21 12:00 1.4K 
[ ]SGD-saccharomyces_cerevisiae.origin_of_replication.gff2018-08-21 11:54 1.6K 
[ ]SGD-saccharomyces_cerevisiae.pseudogene.bed2018-08-21 12:01 5.3K 
[ ]SGD-saccharomyces_cerevisiae.pseudogene.gff2018-08-21 11:54 5.5K 
[ ]SGD-saccharomyces_cerevisiae.rRNA_gene.bed2018-08-21 12:01 11K 
[ ]SGD-saccharomyces_cerevisiae.rRNA_gene.gff2018-08-21 11:54 12K 
[ ]SGD-saccharomyces_cerevisiae.silent_mating_type_cassette_array.bed2018-08-21 12:01 1.5K 
[ ]SGD-saccharomyces_cerevisiae.silent_mating_type_cassette_array.ext1kb.bed2018-08-21 12:46 1.5K 
[ ]SGD-saccharomyces_cerevisiae.silent_mating_type_cassette_array.gff2018-08-21 11:54 1.6K 
[ ]SGD-saccharomyces_cerevisiae.snRNA_gene.bed2018-08-21 12:01 2.3K 
[ ]SGD-saccharomyces_cerevisiae.snRNA_gene.gff2018-08-21 11:54 2.5K 
[ ]SGD-saccharomyces_cerevisiae.snoRNA_gene.bed2018-08-21 12:01 30K 
[ ]SGD-saccharomyces_cerevisiae.snoRNA_gene.gff2018-08-21 11:54 31K 
[ ]SGD-saccharomyces_cerevisiae.telomerase_RNA_gene.bed2018-08-21 12:01 680  
[ ]SGD-saccharomyces_cerevisiae.telomerase_RNA_gene.gff2018-08-21 11:54 708  
[ ]SGD-saccharomyces_cerevisiae.telomere.bed2018-08-21 12:01 13K 
[ ]SGD-saccharomyces_cerevisiae.telomere.gff2018-08-21 11:54 14K 
[ ]SGD-saccharomyces_cerevisiae.telomeric_repeat.bed2018-08-21 12:01 3.0K 
[ ]SGD-saccharomyces_cerevisiae.telomeric_repeat.gff2018-08-21 11:54 3.7K 
[ ]SGD-saccharomyces_cerevisiae.transposable_element_gene.TSS2018-08-23 23:25 49K 
[ ]SGD-saccharomyces_cerevisiae.transposable_element_gene.bed2018-08-21 12:01 49K 
[ ]SGD-saccharomyces_cerevisiae.transposable_element_gene.gff2018-08-21 11:54 52K 
[DIR]SMAC-seq-resolution/2018-08-10 15:48 -  
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrI2018-07-05 20:44 5.4K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrII2018-07-05 20:44 21K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIII2018-07-05 20:44 8.9K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIV2018-07-05 20:44 39K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrIX2018-07-05 20:44 11K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrM2018-07-05 20:44 2.1K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrV2018-07-05 20:44 15K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVI2018-07-05 20:44 6.8K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVII2018-07-05 20:44 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrVIII2018-07-05 20:44 16K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrX2018-07-05 20:44 18K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXI2018-07-05 20:44 16K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXII2018-07-05 20:44 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIII2018-07-05 20:44 25K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXIV2018-07-05 20:44 20K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXV2018-07-05 20:44 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-100bp.bed.chrXVI2018-07-05 20:44 24K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrI2018-07-05 19:50 5.4K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrII2018-07-05 19:50 21K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrIII2018-07-05 19:50 8.9K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrIV2018-07-05 19:50 39K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrIX2018-07-05 19:50 11K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrM2018-07-05 19:50 2.1K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrV2018-07-05 19:50 15K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrVI2018-07-05 19:50 6.8K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrVII2018-07-05 19:50 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrVIII2018-07-05 19:50 16K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrX2018-07-05 19:50 18K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrXI2018-07-05 19:50 16K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrXII2018-07-05 19:50 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrXIII2018-07-05 19:50 25K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrXIV2018-07-05 19:50 20K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrXV2018-07-05 19:50 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-200bp.bed.chrXVI2018-07-05 19:50 24K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrI2018-08-03 13:02 5.4K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrII2018-08-03 13:02 21K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIII2018-08-03 13:02 8.9K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIV2018-08-03 13:02 39K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrIX2018-08-03 13:02 11K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrM2018-08-03 13:02 2.1K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrV2018-08-03 13:02 15K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVI2018-08-03 13:02 6.8K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVII2018-08-03 13:02 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrVIII2018-08-03 13:02 16K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrX2018-08-03 13:02 18K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXI2018-08-03 13:02 16K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXII2018-08-03 13:02 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIII2018-08-03 13:02 25K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXIV2018-08-03 13:02 20K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXV2018-08-03 13:02 28K 
[ ]Saccharomyces_cerevisiae.SacCer_Apr2011.20.TSS-upstream200bp.bed.chrXVI2018-08-03 13:02 24K 
[ ]SingleMoleculeCorrelations-Fisher.tar.gz2019-10-31 10:14 26M 
[ ]SingleMoleculeCorrelations-empirical-quantile-0.75.tar.gz2019-10-31 10:16 260M 
[ ]SingleMoleculeCorrelations-empirical-quantile.tar.gz2019-10-31 10:15 259M 
[ ]SingleMoleculeCorrelations-empirical.tar.gz2019-10-31 10:14 23M 
[DIR]TSS-distances/2018-07-16 19:56 -  
[ ]average_per_read_entropy.tar.gz2019-10-31 09:55 14M 
[DIR]centromeres.2kb.20180515_Yeast_Run-tombo_denovo_1.3.BI_w10_s5_a10_b10-binary-0.5-Greys/2019-10-31 09:52 -  
[DIR]centromeres.2kb.20180515_Yeast_Run-tombo_denovo_1.3.binary-0.5-Greys/2019-10-31 09:52 -  
[DIR]centromeres.2kb.20180515_Yeast_Run-tombo_denovo_1.3.filtered.binary-0.5-Greys/2019-10-31 09:52 -  
[ ]centromeres.2kb.bed2018-05-29 20:41 358  
[ ]centromeres.400bp.bed2018-08-03 20:06 326  
[ ]centromeres.bed2018-05-29 20:28 358  
[ ]correlation-between-strands-vs-window-size.tar.gz2019-10-31 10:54 301M 
[ ]cumulativeGeneProfiles.filtered_1kb_0.75.sacCer3.500bp.table2018-10-05 08:53 144K 
[ ]cumulativeGeneProfiles.filtered_1kb_0.75.sacCer3.files2018-10-05 08:50 652  
[ ]cumulativeGeneProfiles.filtered_1kb_0.75.sacCer3.quantile1.500bp.table2018-10-05 08:52 144K 
[ ]cumulativeGeneProfiles.filtered_1kb_0.75.sacCer3.quantile5.500bp.table2018-10-05 08:53 144K 
[DIR]filtering-plots/2019-10-31 09:47 -  
[DIR]footprint-MATa/2019-10-31 09:52 -  
[DIR]footprint-plots-LTR_retrotransposon-gist_heat/2018-08-21 13:08 -  
[DIR]footprint-plots-rRNA-gist_heat/2019-10-31 09:52 -  
[DIR]footprint-plots-silent_mating_type_cassette_array-gist_heat/2019-10-31 09:52 -  
[DIR]matplotlib-marinovg/2018-08-23 00:10 -  
[ ]neighboring-status.TSS-upstream200bp.20180515_Yeast_Run-tombo_denovo_1.3.CG-only2018-08-10 11:05 16K 
[ ]neighboring-status.TSS-upstream200bp.20180515_Yeast_Run-tombo_denovo_1.3.GC-only2018-08-10 11:07 16K 
[ ]neighboring-status.TSS-upstream200bp.20180515_Yeast_Run-tombo_denovo_1.3.m6A-only2018-08-10 13:30 18K 
[ ]neighboring-status.genome-wide.20180515_Yeast_Run-tombo_denovo_1.3.CG-only2018-08-10 09:53 17K 
[ ]neighboring-status.genome-wide.20180515_Yeast_Run-tombo_denovo_1.3.GC-only2018-08-10 10:17 17K 
[ ]neighboring-status.genome-wide.20180515_Yeast_Run-tombo_denovo_1.3.m6A-only2018-08-11 06:46 19K 
[DIR]old_tombo/2019-10-31 10:05 -  
[ ]poorly_positioned_nucleosomes-gist_heat.tar.gz2019-10-31 10:54 426M 
[ ]poorly_positioned_nucleosomes.top100.bed2018-08-09 16:04 3.0K 
[ ]poorly_strongly_positioned_nucleosomes.tar.gz2019-10-31 10:53 50M 
[ ]random_plots.tar.gz2019-10-31 10:14 45M 
[DIR]read_length_vs_methylation/2019-10-31 10:19 -  
[ ]sacCer-oriDB.Confirmed2018-05-29 19:56 19K 
[ ]sacCer-oriDB.Dubious2018-05-29 19:56 6.3K 
[ ]sacCer-oriDB.Likely2018-05-29 19:56 6.6K 
[TXT]sacCer-oriDB.txt2018-05-29 19:53 31K 
[ ]sacCer3.20bp.bed2018-10-04 16:34 12M 
[ ]sacCer3.20bp.bed.chrI2018-10-04 16:42 203K 
[ ]sacCer3.20bp.bed.chrII2018-10-04 16:42 783K 
[ ]sacCer3.20bp.bed.chrIII2018-10-04 16:42 314K 
[ ]sacCer3.20bp.bed.chrIV2018-10-04 16:42 1.5M 
[ ]sacCer3.20bp.bed.chrIX2018-10-04 16:42 419K 
[ ]sacCer3.20bp.bed.chrM2018-10-04 16:42 70K 
[ ]sacCer3.20bp.bed.chrV2018-10-04 16:42 524K 
[ ]sacCer3.20bp.bed.chrVI2018-10-04 16:42 253K 
[ ]sacCer3.20bp.bed.chrVII2018-10-04 16:42 1.1M 
[ ]sacCer3.20bp.bed.chrVIII2018-10-04 16:42 594K 
[ ]sacCer3.20bp.bed.chrX2018-10-04 16:42 681K 
[ ]sacCer3.20bp.bed.chrXI2018-10-04 16:42 640K 
[ ]sacCer3.20bp.bed.chrXII2018-10-04 16:42 1.1M 
[ ]sacCer3.20bp.bed.chrXIII2018-10-04 16:42 1.0M 
[ ]sacCer3.20bp.bed.chrXIV2018-10-04 16:42 793K 
[ ]sacCer3.20bp.bed.chrXV2018-10-04 16:42 1.0M 
[ ]sacCer3.20bp.bed.chrXVI2018-10-04 16:42 961K 
[ ]sacCer3.50bp.bed2018-10-04 16:34 4.7M 
[ ]sacCer3.50bp.bed.chrI2018-10-04 16:42 81K 
[ ]sacCer3.50bp.bed.chrII2018-10-04 16:42 313K 
[ ]sacCer3.50bp.bed.chrIII2018-10-04 16:42 126K 
[ ]sacCer3.50bp.bed.chrIV2018-10-04 16:42 615K 
[ ]sacCer3.50bp.bed.chrIX2018-10-04 16:42 167K 
[ ]sacCer3.50bp.bed.chrM2018-10-04 16:42 28K 
[ ]sacCer3.50bp.bed.chrV2018-10-04 16:42 210K 
[ ]sacCer3.50bp.bed.chrVI2018-10-04 16:42 101K 
[ ]sacCer3.50bp.bed.chrVII2018-10-04 16:42 447K 
[ ]sacCer3.50bp.bed.chrVIII2018-10-04 16:42 237K 
[ ]sacCer3.50bp.bed.chrX2018-10-04 16:42 272K 
[ ]sacCer3.50bp.bed.chrXI2018-10-04 16:42 256K 
[ ]sacCer3.50bp.bed.chrXII2018-10-04 16:42 441K 
[ ]sacCer3.50bp.bed.chrXIII2018-10-04 16:42 393K 
[ ]sacCer3.50bp.bed.chrXIV2018-10-04 16:42 317K 
[ ]sacCer3.50bp.bed.chrXV2018-10-04 16:42 426K 
[ ]sacCer3.50bp.bed.chrXVI2018-10-04 16:42 385K 
[ ]sacCer3.50kb_10kb_step.bed2018-07-10 20:58 24K 
[ ]sacCer3.50kb_10kb_step.bed.chunks7832018-09-18 14:03 21  
[ ]sacCer3.50kb_10kb_step.bed.chunks7842018-09-18 14:03 21  
[ ]sacCer3.50kb_10kb_step.bed.chunks7852018-09-18 14:03 21  
[ ]sacCer3.100bp.bed2018-10-04 16:34 2.4M 
[ ]sacCer3.100bp.bed.chrI2018-10-04 16:42 41K 
[ ]sacCer3.100bp.bed.chrII2018-10-04 16:42 157K 
[ ]sacCer3.100bp.bed.chrIII2018-10-04 16:42 63K 
[ ]sacCer3.100bp.bed.chrIV2018-10-04 16:42 307K 
[ ]sacCer3.100bp.bed.chrIX2018-10-04 16:42 84K 
[ ]sacCer3.100bp.bed.chrM2018-10-04 16:42 14K 
[ ]sacCer3.100bp.bed.chrV2018-10-04 16:42 105K 
[ ]sacCer3.100bp.bed.chrVI2018-10-04 16:42 51K 
[ ]sacCer3.100bp.bed.chrVII2018-10-04 16:42 223K 
[ ]sacCer3.100bp.bed.chrVIII2018-10-04 16:42 119K 
[ ]sacCer3.100bp.bed.chrX2018-10-04 16:42 136K 
[ ]sacCer3.100bp.bed.chrXI2018-10-04 16:42 128K 
[ ]sacCer3.100bp.bed.chrXII2018-10-04 16:42 220K 
[ ]sacCer3.100bp.bed.chrXIII2018-10-04 16:42 196K 
[ ]sacCer3.100bp.bed.chrXIV2018-10-04 16:42 159K 
[ ]sacCer3.100bp.bed.chrXV2018-10-04 16:42 213K 
[ ]sacCer3.100bp.bed.chrXVI2018-10-04 16:42 192K 
[ ]sacCer3.200bp.bed2018-10-04 16:34 1.2M 
[ ]sacCer3.200bp.bed.chrI2018-10-04 16:42 20K 
[ ]sacCer3.200bp.bed.chrII2018-10-04 16:42 78K 
[ ]sacCer3.200bp.bed.chrIII2018-10-04 16:42 31K 
[ ]sacCer3.200bp.bed.chrIV2018-10-04 16:42 154K 
[ ]sacCer3.200bp.bed.chrIX2018-10-04 16:42 42K 
[ ]sacCer3.200bp.bed.chrM2018-10-04 16:42 7.0K 
[ ]sacCer3.200bp.bed.chrV2018-10-04 16:42 52K 
[ ]sacCer3.200bp.bed.chrVI2018-10-04 16:42 25K 
[ ]sacCer3.200bp.bed.chrVII2018-10-04 16:42 112K 
[ ]sacCer3.200bp.bed.chrVIII2018-10-04 16:42 59K 
[ ]sacCer3.200bp.bed.chrX2018-10-04 16:42 68K 
[ ]sacCer3.200bp.bed.chrXI2018-10-04 16:42 64K 
[ ]sacCer3.200bp.bed.chrXII2018-10-04 16:42 110K 
[ ]sacCer3.200bp.bed.chrXIII2018-10-04 16:42 98K 
[ ]sacCer3.200bp.bed.chrXIV2018-10-04 16:42 79K 
[ ]sacCer3.200bp.bed.chrXV2018-10-04 16:42 106K 
[ ]sacCer3.200bp.bed.chrXVI2018-10-04 16:42 96K 
[ ]sacCer3.500bp.bed2018-10-04 16:34 482K 
[ ]sacCer3.500bp.bed.chrI2018-10-04 16:42 8.1K 
[ ]sacCer3.500bp.bed.chrII2018-10-04 16:42 31K 
[ ]sacCer3.500bp.bed.chrIII2018-10-04 16:42 13K 
[ ]sacCer3.500bp.bed.chrIV2018-10-04 16:42 61K 
[ ]sacCer3.500bp.bed.chrIX2018-10-04 16:42 17K 
[ ]sacCer3.500bp.bed.chrM2018-10-04 16:42 2.8K 
[ ]sacCer3.500bp.bed.chrV2018-10-04 16:42 21K 
[ ]sacCer3.500bp.bed.chrVI2018-10-04 16:42 10K 
[ ]sacCer3.500bp.bed.chrVII2018-10-04 16:42 45K 
[ ]sacCer3.500bp.bed.chrVIII2018-10-04 16:42 24K 
[ ]sacCer3.500bp.bed.chrX2018-10-04 16:42 27K 
[ ]sacCer3.500bp.bed.chrXI2018-10-04 16:42 26K 
[ ]sacCer3.500bp.bed.chrXII2018-10-04 16:42 44K 
[ ]sacCer3.500bp.bed.chrXIII2018-10-04 16:42 39K 
[ ]sacCer3.500bp.bed.chrXIV2018-10-04 16:42 32K 
[ ]sacCer3.500bp.bed.chrXV2018-10-04 16:42 43K 
[ ]sacCer3.500bp.bed.chrXVI2018-10-04 16:42 38K 
[ ]sacCer3.chrom.bed.chrI2018-07-08 21:23 14  
[ ]sacCer3.chrom.bed.chrII2018-07-08 21:23 15  
[ ]sacCer3.chrom.bed.chrIII2018-07-08 21:23 16  
[ ]sacCer3.chrom.bed.chrIV2018-07-08 21:23 16  
[ ]sacCer3.chrom.bed.chrIX2018-07-08 21:23 15  
[ ]sacCer3.chrom.bed.chrM2018-07-08 21:23 13  
[ ]sacCer3.chrom.bed.chrV2018-07-08 21:23 14  
[ ]sacCer3.chrom.bed.chrVI2018-07-08 21:23 15  
[ ]sacCer3.chrom.bed.chrVII2018-07-08 21:23 17  
[ ]sacCer3.chrom.bed.chrVIII2018-07-08 21:23 17  
[ ]sacCer3.chrom.bed.chrX2018-07-08 21:23 14  
[ ]sacCer3.chrom.bed.chrXI2018-07-08 21:23 15  
[ ]sacCer3.chrom.bed.chrXII2018-07-08 21:23 17  
[ ]sacCer3.chrom.bed.chrXIII2018-07-08 21:23 17  
[ ]sacCer3.chrom.bed.chrXIV2018-07-08 21:23 16  
[ ]sacCer3.chrom.bed.chrXV2018-07-08 21:23 16  
[ ]sacCer3.chrom.bed.chrXVI2018-07-08 21:23 16  
[DIR]seq-bias/2018-08-17 09:06 -  
[ ]shell.condor2018-09-04 17:17 42K 
[ ]signal-around-ChemMap.tar.gz2019-10-31 10:14 2.8M 
[ ]signal-around-TIF-TSS.tar.gz2019-10-31 10:14 4.6M 
[ ]signal-around-TIF-TTS.tar.gz2019-10-31 10:14 3.4M 
[ ]signal-around-files.tar.gz2019-10-31 10:15 45  
[ ]signal-around-repeats.tar.gz2019-10-31 10:14 54K 
[ ]strongly_positioned_nucleosomes-gist_heat.tar.gz2019-10-31 10:54 435M 
[ ]strongly_positioned_nucleosomes.top100.bed2018-08-09 16:04 3.1K 
[DIR]stuff/2018-09-19 21:58 -  
[ ]tSNE.tar.gz2019-10-31 10:14 568K 
[ ]telo.bed2018-08-08 11:54 7.5K 
[DIR]tracks/2018-10-05 08:51 -  
[ ]z2018-11-25 09:24 49K 
[IMG]z.Fig2-test.20180515_Yeast_Run-tombo_denovo_1.3.gist_heat-binarize-0.5.chrIV_557409-564011_for.scatter.png2018-08-29 18:47 1.4M 
[IMG]z.Fig2-test.20180515_Yeast_Run-tombo_denovo_1.3.gist_heat-binarize-0.5.chrV_469601-476203_for.scatter.png2018-08-29 18:41 1.4M 
[IMG]z.Fig2-test.20180515_Yeast_Run-tombo_denovo_1.3.gist_heat-binarize-0.5.chrV_482805-489407_for.scatter.png2018-08-29 18:42 1.1M 
[IMG]z.Fig2-test.20180515_Yeast_Run-tombo_denovo_1.3.gist_heat-binarize-0.5.chrV_558069-564671_for.scatter.png2018-08-29 18:44 1.2M 
[IMG]z.Fig2-test.20180515_Yeast_Run-tombo_denovo_1.3.minus_strand.gist_heat-binarize-0.5.chrIV_557409-564011_for.scatter.png2018-08-29 18:49 767K 
[ ]z.bed2018-08-29 18:44 19  
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