python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster0.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster0.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster0.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster0.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster0.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster0.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster0.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster0.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster0.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster0.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster0.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster0.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster0.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster10.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster10.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster10.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster10.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster10.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster10.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster10.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster10.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster10.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster10.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster10.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster10.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster10.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster11.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster11.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster11.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster11.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster11.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster11.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster11.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster11.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster11.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster11.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster11.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster11.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster11.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster12.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster12.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster12.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster12.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster12.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster12.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster12.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster12.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster12.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster12.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster12.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster12.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster12.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster13.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster13.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster13.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster13.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster13.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster13.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster13.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster13.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster13.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster13.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster13.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster13.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster13.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster14.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster14.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster14.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster14.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster14.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster14.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster14.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster14.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster14.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster14.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster14.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster14.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster14.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster15.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster15.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster15.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster15.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster15.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster15.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster15.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster15.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster15.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster15.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster15.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster15.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster15.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster16.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster16.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster16.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster16.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster16.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster16.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster16.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster16.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster16.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster16.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster16.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster16.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster16.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster17.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster17.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster17.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster17.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster17.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster17.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster17.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster17.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster17.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster17.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster17.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster17.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster17.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster18.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster18.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster18.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster18.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster18.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster18.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster18.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster18.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster18.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster18.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster18.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster18.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster18.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster19.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster19.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster19.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster19.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster19.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster19.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster19.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster19.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster19.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster19.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster19.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster19.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster19.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster1.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster1.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster1.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster1.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster1.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster1.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster1.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster1.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster1.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster1.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster1.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster1.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster1.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster20.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster20.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster20.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster20.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster20.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster20.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster20.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster20.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster20.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster20.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster20.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster20.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster20.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster21.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster21.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster21.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster21.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster21.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster21.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster21.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster21.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster21.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster21.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster21.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster21.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster21.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster22.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster22.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster22.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster22.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster22.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster22.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster22.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster22.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster22.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster22.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster22.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster22.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster22.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster23.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster23.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster23.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster23.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster23.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster23.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster23.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster23.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster23.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster23.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster23.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster23.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster23.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster24.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster24.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster24.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster24.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster24.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster24.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster24.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster24.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster24.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster24.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster24.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster24.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster24.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster2.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster2.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster2.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster2.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster2.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster2.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster2.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster2.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster2.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster2.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster2.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster2.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster2.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster3.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster3.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster3.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster3.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster3.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster3.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster3.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster3.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster3.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster3.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster3.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster3.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster3.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster4.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster4.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster4.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster4.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster4.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster4.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster4.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster4.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster4.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster4.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster4.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster4.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster4.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster5.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster5.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster5.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster5.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster5.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster5.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster5.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster5.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster5.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster5.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster5.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster5.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster5.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster6.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster6.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster6.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster6.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster6.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster6.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster6.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster6.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster6.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster6.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster6.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster6.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster6.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster7.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster7.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster7.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster7.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster7.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster7.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster7.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster7.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster7.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster7.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster7.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster7.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster7.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster8.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster8.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster8.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster8.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster8.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster8.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster8.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster8.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster8.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster8.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster8.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster8.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster8.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster9.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster9.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster9.neg.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster9.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster9.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster9.neg.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster9.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster9.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster9.pos.point2.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.bed 10X-DHS-Cluster9.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.distal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.bed 10X-DHS-Cluster9.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.middle.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa 10X-DHS/Cluster9.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.bed 10X-DHS-Cluster9.pos.point4.txt.limbDnaseHotspotAllBulkAndSCTSSGoodDistanceNumber.proximal.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodChondrocyte.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodChondrocyte.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodChondrocytePerichondrium.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodChondrocytePerichondrium.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial_Macrophage.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial_Macrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Macrophage.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Macrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial_Macrophage.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial_Macrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEpithelial.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEpithelial.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMacrophage.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMacrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMesenchyme.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMesenchyme.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2_3.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2_3.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2_3.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2_3.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle3.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle3.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodNeuralCrest.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodNeuralCrest.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.2-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodPerichondrium.2.bed C1Exclusive-0.2-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodPerichondrium.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodChondrocyte.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodChondrocyte.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodChondrocyte_Perichondrium.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodChondrocyte_Perichondrium.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial_Macrophage.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Endothelial_Macrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Macrophage.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEMP_Macrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial_Macrophage.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEndothelial_Macrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodEpithelial.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodEpithelial.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMacrophage.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMacrophage.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMesenchyme.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMesenchyme.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2_3.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1_2_3.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle1.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2_3.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle2_3.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodMuscle3.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodMuscle3.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodNeuralCrest.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodNeuralCrest.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa C1Exclusive-0.4-DHS/limbDnaseHotspotAllBulkAndSCTSSGoodPerichondrium.2.bed C1Exclusive-0.4-DHS-limbDnaseHotspotAllBulkAndSCTSSGoodPerichondrium.2.fa -chrfield 0
python ~/code/getFastaFromFasta.py ~/genomes/mm10/sequence/mm10.fa ~/papers/2019_Peng-ENCODE-RNA/2019-04-21-motifs/limbDnaseHotspotAllBulkAndSCTSSGood.bed limbDnaseHotspotAllBulkAndSCTSSGood.fa -chrfield 0