rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 1.98e-16 1.59e-11 1.14e-8 80293 1274 1274 171468 1.78 332 26.06 29008 16.92 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0082_1.02 Tcfap2a HGCCBBVGGS 7.85e-16 5.70e-11 4.10e-8 72706 1274 1274 171468 1.78 352 27.63 31591 18.42 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0084_1.02 Tcfap2c HSCCBSAGGS 1.05e-13 7.16e-9 5.14e-6 68408 1274 1274 171468 1.45 446 35.01 43975 25.65 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGYGKGKY 6.60e-13 4.16e-8 2.98e-5 62970 1274 1274 171468 1.64 374 29.36 35777 20.87 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 1.95e-12 1.29e-7 9.27e-5 66277 1274 1274 171468 2.04 315 24.73 29110 16.98 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0085_1.02 Tcfap2e THGCCYSVGG 5.19e-12 3.40e-7 2.44e-4 65555 1274 1274 171468 1.49 403 31.63 39823 23.22 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 6.85e-12 5.63e-7 4.04e-4 82185 1274 1274 171468 1.4 426 33.44 42707 24.91 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 6.65e-12 6.89e-7 4.95e-4 103574 1274 1274 171468 1.52 406 31.87 40258 23.48 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0417_1.02 Egr1 NGMGKGGGYG 8.32e-11 6.03e-6 4.33e-3 72489 1274 1274 171468 1.73 306 24.02 29010 16.92 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0083_1.02 Tcfap2b TNSCCYSAGG 2.18e-10 1.30e-5 9.35e-3 59661 1274 1274 171468 1.03 539 42.31 57999 33.82 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCHGBRGGN 5.07e-10 3.95e-5 2.84e-2 77915 1274 1274 171468 1.01 679 53.30 76626 44.69 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6115_1.02 (Trp63)_(Homo_sapiens)_(DBD_0.86) CATGYCWGRRCHTGY 2.39e-9 1.15e-4 8.22e-2 47943 1274 1274 171468 1.17 410 32.18 42569 24.83 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 1.55e-9 1.19e-4 8.51e-2 76450 1274 1274 171468 1.14 574 45.05 63229 36.88 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2294_1.02 Klf1 WGGGTGTGGYH 7.62e-9 4.51e-4 3.24e-1 59166 1274 1274 171468 1.11 506 39.72 55070 32.12 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0812_1.02 Gcm1 NATRCGGGY 1.18e-8 5.87e-4 4.21e-1 49654 1274 1274 171468 1.01 456 35.79 48884 28.51 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0403_1.02 Zfp711 NNDGGCCHNN 1.65e-8 1.12e-3 8.01e-1 67496 1274 1274 171468 1.19 500 39.25 54600 31.84 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1871_1.02 Klf4 DGGGYGKGGC 2.03e-8 1.32e-3 9.47e-1 64874 1274 1274 171468 1.24 522 40.97 57503 33.54 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0412_1.02 Zic1 CNCMRCRGGN 1.74e-8 1.39e-3 9.98e-1 79792 1274 1274 171468 1.06 609 47.80 68758 40.10 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 3.99e-8 2.64e-3 1.90e0 66260 1274 1274 171468 1.02 576 45.21 64777 37.78 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6106_1.02 Trp73 KRCRTGTYNNGACATGYH 2.36e-7 3.23e-3 2.32e0 13685 1274 1274 171468 1.75 114 8.95 9307 5.43 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 7.12e-8 5.32e-3 3.82e0 74955 1274 1274 171468 1.18 580 45.53 65544 38.23 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0414_1.02 Egr3 RCGTGGGYGD 9.33e-8 5.87e-3 4.21e0 63128 1274 1274 171468 1.17 472 37.05 51710 30.16 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGYB 9.22e-8 6.18e-3 4.44e0 67250 1274 1274 171468 2.49 364 28.57 38157 22.25 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5497_1.02 (Grhl1)_(Homo_sapiens)_(DBD_0.84) AACCGGTYTAACCGGTT 5.92e-7 6.49e-3 4.66e0 10994 1274 1274 171468 1.28 112 8.79 9275 5.41 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0441_1.02 Zic3 CNCHGSRGGN 1.30e-7 1.04e-2 7.44e0 80163 1274 1274 171468 1.01 680 53.38 79050 46.10 # AME (Analysis of Motif Enrichment): Version 5.0.5 compiled on Mar 31 2019 at 02:23:12 # The format of this file is described at http://meme-suite.org//doc/ame-output-format.html. # ame --control ../limbDnaseHotspotAllBulkAndSCTSSGood.fa -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodEpithelial.0.2 ../limbDnaseHotspotAllBulkAndSCTSSGoodEpithelial.0.2.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme