rank	motif_DB	motif_ID	motif_alt_ID	consensus	p-value	adj_p-value	E-value	tests	FASTA_max	pos	neg	PWM_min	TP	%TP	FP	%FP
1	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0118_1.02	(Zfp957)_(Arabidopsis_thaliana)_(DBD_0.40)	NNNNDAAWT	2.10e-10	2.53e-5	1.81e-2	120222	168	168	322166	1	103	61.31	119831	37.20
2	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6121_1.02	Pou5f1	TTWRCATDWNAAARR	4.03e-10	4.12e-5	2.96e-2	102332	168	168	322166	1.04	92	54.76	101521	31.51
3	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0999_1.02	Nkx6-1	NWTAATKRN	5.03e-10	4.52e-5	3.25e-2	89897	168	168	322166	1.06	79	47.02	80349	24.94
4	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0734_1.02	Foxc1	WRNRTMAAYA	3.92e-10	6.30e-5	4.52e-2	160569	168	168	322166	1.19	99	58.93	113751	35.31
5	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0732_1.02	Foxc2	WRNRTMAAYA	4.00e-10	6.33e-5	4.54e-2	158171	168	168	322166	1.02	121	72.02	155764	48.35
6	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1066_1.02	Tlx2	TAWTTAAT	7.76e-10	6.57e-5	4.72e-2	84704	168	168	322166	1.01	81	48.21	84272	26.16
7	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1235_1.02	Pou2f2	HTVATTAN	8.43e-10	8.09e-5	5.81e-2	95995	168	168	322166	1.02	86	51.19	92640	28.76
8	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1015_1.02	Lmx1b	YYAATWH	8.58e-10	1.01e-4	7.25e-2	117740	168	168	322166	1.03	94	55.95	106340	33.01
9	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5348_1.02	(Prrxl1)_(Homo_sapiens)_(DBD_1.00)	NTAATYHAATTAN	4.20e-9	1.82e-4	1.31e-1	43360	168	168	322166	1.75	38	22.62	25746	7.99
10	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1056_1.02	Pou3f4	HTAATKMRNN	2.24e-9	2.24e-4	1.61e-1	99885	168	168	322166	1.03	87	51.79	96044	29.81
11	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0730_1.02	Foxo4	NNRWMAACAN	1.64e-9	2.47e-4	1.78e-1	150418	168	168	322166	1.01	116	69.05	148572	46.12
12	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1580_1.02	Hbp1	HHWTWBNN	2.94e-9	4.55e-4	3.27e-1	154963	168	168	322166	1.02	106	63.10	130454	40.49
13	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1163_1.02	(Nkx6-3)_(PBM_CONSTRUCTS)_(DBD_1.00)	NWTAATKRN	4.97e-9	4.60e-4	3.31e-1	92626	168	168	322166	1.01	83	49.40	90762	28.17
14	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1006_1.02	Hoxa13	SYHRTAAAH	4.61e-9	4.73e-4	3.40e-1	102678	168	168	322166	1.04	86	51.19	95659	29.69
15	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1157_1.02	(Hoxb9)_(PBM_CONSTRUCTS)_(DBD_1.00)	WTTWATKRBN	4.31e-9	4.81e-4	3.45e-1	111567	168	168	322166	1.01	95	56.55	111129	34.49
16	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0917_1.02	Hoxd13	VYHRTAAAH	4.15e-9	4.83e-4	3.47e-1	116374	168	168	322166	1.07	84	50.00	92107	28.59
17	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0737_1.02	Foxb1	WRWGTAAAYA	4.00e-9	5.12e-4	3.68e-1	128124	168	168	322166	1.09	97	57.74	114550	35.56
18	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0747_1.02	Foxl1	WNNRTAAAYA	3.79e-9	5.29e-4	3.79e-1	139569	168	168	322166	1.02	109	64.88	136655	42.42
19	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1232_1.02	Pou1f1	NHKMATTAN	5.56e-9	5.41e-4	3.88e-1	97216	168	168	322166	1.01	86	51.19	96005	29.80
20	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6279_1.02	(Hmga1)_(Homo_sapiens)_(DBD_1.00)	AAAATWN	5.58e-9	6.86e-4	4.92e-1	122932	168	168	322166	1.01	101	60.12	122464	38.01
21	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0132_1.02	Hmga2	NNNNRWWWWN	9.73e-9	9.63e-4	6.91e-1	98989	168	168	322166	1	87	51.79	98753	30.65
22	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1041_1.02	Hoxb13	NVYHRTWAAH	9.91e-9	9.80e-4	7.04e-1	98985	168	168	322166	1.01	87	51.79	98787	30.66
23	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5631_1.02	(Mixl1)_(Homo_sapiens)_(DBD_0.95)	NBTAATTRVN	1.78e-8	1.26e-3	9.04e-1	70951	168	168	322166	1.03	68	40.48	68878	21.38
24	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1590_1.02	Sox15	ATTSWNNNN	1.07e-8	1.48e-3	1.06e0	138693	168	168	322166	1.06	99	58.93	120121	37.29
25	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0928_1.02	Alx3	TAATTDN	2.10e-8	1.95e-3	1.40e0	93211	168	168	322166	1.01	82	48.81	91742	28.48
26	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0923_1.02	Phox2a	NNTAATNN	2.63e-8	2.20e-3	1.58e0	83850	168	168	322166	1.01	76	45.24	82255	25.53
27	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1268_1.02	Irf2	RWANYGAAAS	1.65e-8	2.43e-3	1.74e0	147667	168	168	322166	1.01	113	67.26	147516	45.79
28	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1045_1.02	Hoxd10	WTWAYNNN	2.27e-8	2.50e-3	1.79e0	110236	168	168	322166	1.01	90	53.57	105585	32.77
29	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1032_1.02	Prop1	HYAATTA	2.42e-8	2.72e-3	1.96e0	112565	168	168	322166	1.08	78	46.43	85373	26.50
30	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1033_1.02	Pou3f3	DWATKMRN	2.76e-8	2.75e-3	1.98e0	99713	168	168	322166	1.01	85	50.60	97341	30.21
31	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0989_1.02	Pou2f3	NNWWATKMR	2.91e-8	2.80e-3	2.01e0	96369	168	168	322166	1.02	82	48.81	92363	28.67
32	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1019_1.02	Prrx2	TAATTDN	3.39e-8	3.08e-3	2.21e0	91028	168	168	322166	1.02	77	45.83	84353	26.18
33	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0130_1.02	Setbp1	NDNWWWWNHN	3.59e-8	3.41e-3	2.45e0	95072	168	168	322166	1	83	49.40	94451	29.32
34	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0953_1.02	Pou4f3	NYTAATDW	3.31e-8	3.56e-3	2.56e0	107722	168	168	322166	1.13	71	42.26	74639	23.17
35	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0991_1.02	Isl2	NTAAKDR	3.12e-8	3.82e-3	2.74e0	122704	168	168	322166	1	98	58.33	120518	37.41
36	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0931_1.02	Lhx1	TAATTRNNN	4.33e-8	4.03e-3	2.89e0	93276	168	168	322166	1.02	80	47.62	89772	27.87
37	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0131_1.02	Ahctf1	AAATAAAT	2.90e-8	4.15e-3	2.98e0	143407	168	168	322166	1.28	94	55.95	113149	35.12
38	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1026_1.02	Hoxd11	TTWAYKRB	4.31e-8	4.28e-3	3.07e0	99629	168	168	322166	1.01	84	50.00	96505	29.96
39	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1641_1.02	Tbp	WTAWAWN	4.11e-8	4.62e-3	3.32e0	112678	168	168	322166	1	93	55.36	112086	34.79
40	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1243_1.02	Pit1	NDTKMATWWD	5.31e-8	5.44e-3	3.90e0	102635	168	168	322166	1.11	77	45.83	85190	26.44
41	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0904_1.02	Hoxa10	TTWAYKDNN	5.84e-8	5.47e-3	3.93e0	93894	168	168	322166	1.01	81	48.21	92025	28.56
42	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0914_1.02	Hoxc8	DTWATBDNN	6.01e-8	5.63e-3	4.04e0	93859	168	168	322166	1.02	76	45.24	83781	26.01
43	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0962_1.02	Lhx6	NYAATYAD	7.65e-8	6.18e-3	4.43e0	81000	168	168	322166	1.13	65	38.69	66702	20.70
44	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1238_1.02	Pou3f1	NDMATWANN	6.98e-8	6.59e-3	4.73e0	94661	168	168	322166	1.01	82	48.81	94063	29.20
45	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1519_1.02	(Nfat5)_(Gallus_gallus)_(DBD_1.00)	NTTTTCCAYN	4.99e-8	6.99e-3	5.02e0	140623	168	168	322166	1.03	107	63.69	138334	42.94
46	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0912_1.02	Hoxc13	NSYHRTAAAH	7.10e-8	7.29e-3	5.23e0	103015	168	168	322166	1.04	84	50.00	97499	30.26
47	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0971_1.02	Pax7	NTAATYNN	9.50e-8	7.44e-3	5.34e0	78589	168	168	322166	1	72	42.86	78137	24.25
48	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0935_1.02	Dlx4	NTAATTRN	9.34e-8	8.20e-3	5.89e0	88201	168	168	322166	1	78	46.43	87925	27.29
49	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0635_1.02	Dmrtc2	NAMATGTATHMWN	1.17e-7	8.50e-3	6.10e0	72905	168	168	322166	1.2	59	35.12	58291	18.09
50	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1236_1.02	Pou2f1	HKMATWWNN	9.09e-8	8.55e-3	6.14e0	94422	168	168	322166	1.05	76	45.24	84566	26.25
51	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1055_1.02	Hoxb8	NTWATKRNN	1.31e-7	1.10e-2	7.88e0	84131	168	168	322166	1	75	44.64	83628	25.96
52	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1014_1.02	Hoxb7	NTWATDDN	1.31e-7	1.15e-2	8.22e0	87896	168	168	322166	1	77	45.83	86926	26.98
53	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0949_1.02	Hoxc5	NTAATDR	1.16e-7	1.15e-2	8.26e0	99340	168	168	322166	1.02	81	48.21	93392	28.99
54	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1051_1.02	Pou3f2	NTWATBHN	1.24e-7	1.18e-2	8.48e0	95986	168	168	322166	1.01	81	48.21	93515	29.03
55	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0924_1.02	Pou6f1	NTAATKAGNN	1.32e-7	1.23e-2	8.82e0	93789	168	168	322166	1.02	80	47.62	91952	28.54
56	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0964_1.02	Hoxd8	NTWATNDN	1.39e-7	1.23e-2	8.83e0	88991	168	168	322166	1.01	75	44.64	83739	25.99

# AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28
# The format of this file is described at http://meme-suite.org/doc/ame-output-format.html.
# ame --control ../limbDnaseHotspotAll.fa -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodGreen ../limbDnaseHotspotAllBulkAndSCTSSGoodGreen.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme