rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0107_1.02 Arid5b NNRTATTN 3.04e-7 2.77e-4 1.99e-1 911 76 76 836 1 43 56.58 228 27.27 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSNG 6.41e-7 5.84e-4 4.19e-1 911 258 258 654 1.02 130 50.39 214 32.72 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGYB 7.09e-7 6.45e-4 4.63e-1 911 264 264 648 1.01 142 53.79 234 36.11 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 1.24e-6 1.13e-3 8.12e-1 911 276 276 636 1.01 162 58.70 264 41.51 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 1.77e-6 1.61e-3 1.16e0 911 277 277 635 1.01 162 58.48 264 41.57 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6267_1.02 (Glis3)_(Homo_sapiens)_(DBD_0.98) GYGGGGGGTM 1.87e-6 1.71e-3 1.23e0 911 286 286 626 1.01 125 43.71 174 27.80 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1062_1.02 Obox3 NTAATCY 1.95e-6 1.77e-3 1.27e0 911 67 67 845 1 42 62.69 280 33.14 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1057_1.02 Homez NNHWCGWDNN 2.07e-6 1.88e-3 1.35e0 911 76 76 836 1 42 55.26 235 28.11 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSVVRGRGGCGGGRC 2.47e-6 2.25e-3 1.62e0 911 544 544 368 1.03 264 48.53 122 33.15 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0812_1.02 Gcm1 NATRCGGGY 2.50e-6 2.28e-3 1.64e0 911 255 255 657 1.01 121 47.45 203 30.90 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 2.68e-6 2.44e-3 1.75e0 911 267 267 645 1.01 164 61.42 288 44.65 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 2.84e-6 2.58e-3 1.85e0 911 550 550 362 1.04 273 49.64 124 34.25 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0971_1.02 Pax7 NTAATYNN 3.82e-6 3.48e-3 2.50e0 911 67 67 845 1 42 62.69 287 33.96 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1890_1.02 (Nfya)_(Homo_sapiens)_(DBD_1.00) AGVSYKCTGATTGGTBSR 5.44e-6 4.94e-3 3.55e0 911 136 136 776 1.06 27 19.85 52 6.70 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1009_1.02 Hoxa7 NTWATKDNN 6.49e-6 5.90e-3 4.23e0 911 66 66 846 1 41 62.12 287 33.92 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0927_1.02 Phox2b NNTAATNN 6.68e-6 6.07e-3 4.36e0 911 67 67 845 1 42 62.69 293 34.67 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0995_1.02 Gbx2 NTAATYR 7.32e-6 6.65e-3 4.77e0 911 67 67 845 1 44 65.67 318 37.63 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGYGKGKY 7.72e-6 7.01e-3 5.03e0 911 421 421 491 1.01 198 47.03 161 32.79 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0429_1.02 Zfp740 NDKGGGGGGG 7.76e-6 7.04e-3 5.06e0 911 258 258 654 1.01 140 54.26 250 38.23 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 9.25e-6 8.39e-3 6.02e0 911 277 277 635 1 185 66.79 326 51.34 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 9.67e-6 8.78e-3 6.30e0 911 543 543 369 1.05 245 45.12 114 30.89 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0293_1.02 Tef NRTTAYRYVA 1.02e-5 9.24e-3 6.63e0 911 102 102 810 1 37 36.27 137 16.91 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCHGBRGGN 1.06e-5 9.63e-3 6.91e0 911 423 423 489 1 261 61.70 232 47.44 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0393_1.02 Glis2 NHGRGGGGTCN 1.46e-5 1.32e-2 9.47e0 911 286 286 626 1.01 119 41.61 171 27.32 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1127_1.02 Dobox4 NWRAKMCHNN 1.48e-5 1.34e-2 9.61e0 911 102 102 810 1 69 67.65 367 45.31 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0306_1.02 Atf4 NNVTTACGHAHNN 1.53e-5 1.39e-2 9.96e0 911 28 28 884 1 13 46.43 109 12.33 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodBlue_Loose ../limbDnaseHotspotAllBulkAndSCTSSGoodBlue_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme