rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 1.82e-10 1.21e-7 8.70e-5 667 17 17 1003 12.1 9 52.94 23 2.29 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2283_1.02 (Foxp4)_(Homo_sapiens)_(DBD_0.87) HWWADGTAAACAAAR 1.86e-8 7.17e-6 5.15e-3 386 17 17 1003 30.3 7 41.18 16 1.60 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 2.63e-8 1.84e-5 1.32e-2 698 17 17 1003 23.4 8 47.06 29 2.89 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6244_1.02 (Foxm1)_(Homo_sapiens)_(DBD_0.99) RWAAWCAMWCAAV 4.44e-8 2.03e-5 1.46e-2 458 17 17 1003 3.38 12 70.59 119 11.86 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 3.87e-7 2.79e-4 2.00e-1 721 17 17 1003 29.9 8 47.06 43 4.29 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4536_1.02 (E2f1)_(Homo_sapiens)_(DBD_0.98) VRRVRGVGCGCGCRS 9.56e-7 3.00e-4 2.15e-1 314 17 17 1003 3.33 8 47.06 49 4.89 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6241_1.02 (Foxn3)_(Homo_sapiens)_(DBD_0.45) WAAAYAAACA 1.05e-5 2.75e-3 1.98e0 263 17 17 1003 29.3 4 23.53 6 0.60 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2317_1.02 Tcf12 RACAGCTGSNV 8.26e-6 3.03e-3 2.18e0 368 17 17 1003 2.29 12 70.59 194 19.34 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0131_1.02 Ahctf1 AAATAAAT 1.12e-5 4.58e-3 3.29e0 408 17 17 1003 4.02 9 52.94 96 9.57 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2300_1.02 Myog RRCAGCTGSNV 1.26e-5 4.84e-3 3.47e0 384 17 17 1003 2.41 12 70.59 202 20.14 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 1.04e-5 6.55e-3 4.70e0 634 17 17 1003 20 9 52.94 95 9.47 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6234_1.02 (Foxa3)_(Homo_sapiens)_(DBD_1.00) RVWAARYAAAYAD 2.96e-5 9.01e-3 6.47e0 306 17 17 1003 12.6 5 29.41 20 1.99 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6239_1.02 (Foxf2)_(Homo_sapiens)_(DBD_1.00) HWADGTAAACA 3.96e-5 9.06e-3 6.50e0 230 17 17 1003 5.83 6 35.29 38 3.79 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1265_1.02 Irf7 DAARCGAAAR 1.81e-5 1.01e-2 7.29e0 565 17 17 1003 2.83 9 52.94 102 10.17 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6136_1.02 Bcl6 RRRDRRVVRRRRRRRRGGAAGWVWKGRARA 1.52e-5 1.09e-2 7.84e0 721 17 17 1003 62.8 8 47.06 73 7.28 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6237_1.02 (Foxd3)_(Homo_sapiens)_(DBD_1.00) AAACAAACA 3.46e-5 1.28e-2 9.20e0 373 17 17 1003 1.21 14 82.35 322 32.10 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4971_1.02 (Ferd3l)_(Drosophila_melanogaster)_(DBD_0.89) GTVACAGVTG 4.22e-5 1.34e-2 9.64e0 320 17 17 1003 1.09 13 76.47 274 27.32 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control --shuffle-- -o AME-CISBP_Mus_musculus-mm10-refFlat-2014-10-26.TSS-500bp.LateMuscleFinalGenes ../mm10-refFlat-2014-10-26.TSS-500bp.LateMuscleFinalGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme