rank	motif_DB	motif_ID	motif_alt_ID	consensus	p-value	adj_p-value	E-value	tests	FASTA_max	pos	neg	PWM_min	TP	%TP	FP	%FP
1	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2391_1.02	(Klf5)_(Homo_sapiens)_(DBD_0.95)	DGGGHGGGGC	1.06e-13	7.02e-11	5.04e-8	662	30	30	1020	5.45	15	50.00	34	3.33
2	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5446_1.02	(Foxd1)_(Homo_sapiens)_(DBD_0.99)	GTAAACA	3.79e-11	1.07e-8	7.65e-6	281	30	30	1020	1.83	19	63.33	113	11.08
3	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6115_1.02	(Trp63)_(Homo_sapiens)_(DBD_0.86)	CATGYCWGRRCHTGY	6.39e-11	2.03e-8	1.45e-5	317	30	30	1020	4.97	13	43.33	36	3.53
4	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1956_1.02	(Rest)_(Homo_sapiens)_(DBD_0.98)	TTCAGCACCATGGACAGCDCC	3.24e-10	2.72e-8	1.95e-5	84	30	30	1020	6.16e+03	6	20.00	0	0.00
5	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5959_1.02	(Zbtb49)_(Homo_sapiens)_(DBD_0.95)	TTYCGCYTGGCVSGTCA	4.40e-10	3.69e-8	2.65e-5	84	30	30	1020	17.6	8	26.67	6	0.59
6	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5209_1.02	(Sp5)_(Drosophila_melanogaster)_(DBD_0.93)	GKGGGCGKRKC	1.21e-10	4.24e-8	3.05e-5	350	30	30	1020	3.52	11	36.67	21	2.06
7	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2314_1.02	(Sp2)_(Homo_sapiens)_(DBD_1.00)	SSSVRGRGGCGGGRC	8.35e-11	5.56e-8	3.99e-5	666	30	30	1020	6.05	17	56.67	86	8.43
8	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6106_1.02	Trp73	KRCRTGTYNNGACATGYH	1.45e-9	1.43e-7	1.03e-4	99	30	30	1020	1.28	15	50.00	74	7.25
9	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0417_1.02	Egr1	NGMGKGGGYG	3.72e-10	2.91e-7	2.09e-4	782	30	30	1020	2.01	11	36.67	24	2.35
10	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5998_1.02	9430076C15Rik	DRTGACGTCATN	1.35e-8	5.28e-7	3.79e-4	39	30	30	1020	23.9	5	16.67	0	0.00
11	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6123_1.02	Zfp281	GRGKTGGGGGAGGGG	1.20e-9	6.55e-7	4.70e-4	547	30	30	1020	8.58	18	60.00	121	11.86
12	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0732_1.02	Foxc2	WRNRTMAAYA	2.43e-9	8.37e-7	6.01e-4	345	30	30	1020	1.05	25	83.33	299	29.31
13	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0734_1.02	Foxc1	WRNRTMAAYA	2.61e-9	8.87e-7	6.37e-4	340	30	30	1020	1.05	25	83.33	300	29.41
14	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2318_1.02	Tcf3	SMCAGCTGCHB	2.23e-9	1.15e-6	8.26e-4	517	30	30	1020	2.4	23	76.67	239	23.43
15	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0730_1.02	Foxo4	NNRWMAACAN	4.34e-9	1.49e-6	1.07e-3	343	30	30	1020	1.03	25	83.33	307	30.10
16	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0421_1.02	Klf8	NGGGYGKGKN	2.27e-9	1.57e-6	1.13e-3	692	30	30	1020	1.92	7	23.33	4	0.39
17	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0747_1.02	Foxl1	NNNRTAAAYA	8.06e-9	2.63e-6	1.89e-3	326	30	30	1020	1.21	23	76.67	255	25.00
18	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6529_1.02	(Ubp1)_(Homo_sapiens)_(DBD_0.93)	TYTCTGS	3.95e-9	2.64e-6	1.89e-3	667	30	30	1020	1.83	23	76.67	246	24.12
19	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0737_1.02	Foxb1	WRWGTAAAYA	9.20e-9	2.89e-6	2.07e-3	314	30	30	1020	1.03	24	80.00	286	28.04
20	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0443_1.02	Klf12	DGGGCGKGKY	8.22e-9	4.23e-6	3.03e-3	514	30	30	1020	1.96	10	33.33	25	2.45
21	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0725_1.02	Foxp1	NGTAAACAN	1.52e-8	4.88e-6	3.50e-3	321	30	30	1020	1.01	24	80.00	293	28.73
22	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6234_1.02	(Foxa3)_(Homo_sapiens)_(DBD_1.00)	RVWAARYAAAYAD	1.55e-8	4.90e-6	3.52e-3	316	30	30	1020	1.48	22	73.33	236	23.14
23	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6466_1.02	(Smad4)_(Homo_sapiens)_(DBD_1.00)	TGTCTGBCY	1.14e-8	5.46e-6	3.92e-3	481	30	30	1020	4.05	7	23.33	6	0.59
24	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0721_1.02	Foxj2	RTMAACANN	2.01e-8	6.53e-6	4.69e-3	324	30	30	1020	1.02	24	80.00	297	29.12
25	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0405_1.02	Klf7	DGGGCGKGGY	1.50e-8	8.73e-6	6.27e-3	580	30	30	1020	2.15	10	33.33	27	2.65
26	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6321_1.02	(Klf15)_(Homo_sapiens)_(DBD_1.00)	RSMKGGGAGDKGGGGSS	2.55e-8	1.43e-5	1.03e-2	561	30	30	1020	1.41	27	90.00	407	39.90
27	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5593_1.02	(Klf16)_(Homo_sapiens)_(DBD_0.92)	GGGGGCGTGKC	3.05e-8	1.46e-5	1.05e-2	477	30	30	1020	2.65	17	56.67	130	12.75
28	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6552_1.02	(Zfp148)_(Homo_sapiens)_(DBD_1.00)	KGVGKGGGGGAGGGG	2.25e-8	1.52e-5	1.09e-2	676	30	30	1020	8.93	16	53.33	109	10.69
29	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5302_1.02	(Batf3)_(Homo_sapiens)_(DBD_0.75)	TGATGACGTCATCA	7.13e-7	1.85e-5	1.33e-2	26	30	30	1020	3.95	5	16.67	3	0.29
30	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0392_1.02	Sp1	GGGGGCGKG	5.14e-8	2.37e-5	1.70e-2	462	30	30	1020	2.36	16	53.33	116	11.37
31	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6420_1.02	(Plag1)_(Homo_sapiens)_(DBD_0.96)	GGRGGSMHNWVKAGGGG	3.94e-8	2.78e-5	2.00e-2	707	30	30	1020	3.97	20	66.67	197	19.31
32	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5323_1.02	(Creb3)_(Homo_sapiens)_(DBD_0.82)	KGRTGACGTCAYNV	7.13e-7	3.28e-5	2.36e-2	46	30	30	1020	6.15	5	16.67	3	0.29
33	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6553_1.02	(Zfp219)_(Homo_sapiens)_(DBD_1.00)	GDGGGGGGYGGA	7.46e-8	4.19e-5	3.01e-2	561	30	30	1020	4.56	13	43.33	70	6.86
34	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5592_1.02	(Klf14)_(Homo_sapiens)_(DBD_0.96)	ARGKGGGCGTGGYM	2.72e-7	5.68e-5	4.08e-2	209	30	30	1020	2.24	13	43.33	79	7.75
35	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0414_1.02	Egr3	RCGTGGGCGD	1.18e-7	5.74e-5	4.12e-2	488	30	30	1020	1.31	18	60.00	164	16.08
36	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0196_1.02	Npas2	NSCACGTGTN	5.58e-7	6.76e-5	4.85e-2	121	30	30	1020	1.79	11	36.67	55	5.39
37	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2309_1.02	(Rfx5)_(Homo_sapiens)_(DBD_0.99)	BCWGTTGCYAKGSVR	3.38e-7	1.05e-4	7.53e-2	310	30	30	1020	2.42	14	46.67	97	9.51
38	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6325_1.02	(Klf6)_(Homo_sapiens)_(DBD_1.00)	GGGGGCKG	1.57e-7	1.21e-4	8.72e-2	774	30	30	1020	2.3	17	56.67	146	14.31
39	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6136_1.02	Bcl6	RRRDRRVVRRRRRRRRGGAAGWVWKGRARA	2.84e-7	1.87e-4	1.34e-1	659	30	30	1020	19.4	18	60.00	174	17.06
40	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6336_1.02	(Maz)_(Homo_sapiens)_(DBD_0.98)	RGGGDRGGGAGGGRGGG	3.03e-7	2.17e-4	1.56e-1	716	30	30	1020	4.87	22	73.33	277	27.16
41	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6535_1.02	(Wt1)_(Homo_sapiens)_(DBD_0.99)	GMGGGGGCGKGGG	5.26e-7	3.00e-4	2.15e-1	570	30	30	1020	2.17	21	70.00	257	25.20
42	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1965_1.02	(Foxa1)_(Homo_sapiens)_(DBD_1.00)	HWRWGTAAACANVNN	1.21e-6	3.05e-4	2.19e-1	253	30	30	1020	1.24	18	60.00	192	18.82
43	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6482_1.02	(Sp3)_(Homo_sapiens)_(DBD_0.97)	VGVVGGGGGCGGGGCBRGSS	6.47e-7	4.62e-4	3.32e-1	715	30	30	1020	4.13	18	60.00	184	18.04
44	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6464_1.02	(Smad2)_(Homo_sapiens)_(DBD_0.99)	GTGTCHGKCTV	1.33e-6	5.32e-4	3.82e-1	399	30	30	1020	4.51	7	23.33	16	1.57
45	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6237_1.02	(Foxd3)_(Homo_sapiens)_(DBD_1.00)	AAACAAACA	1.57e-6	5.47e-4	3.93e-1	348	30	30	1020	48.1	5	16.67	4	0.39
46	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0723_1.02	Foxg1	NNRWMAAYAN	2.16e-6	6.57e-4	4.72e-1	304	30	30	1020	1.01	21	70.00	279	27.35
47	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1871_1.02	Klf4	DGGGYGKGGC	1.84e-6	8.88e-4	6.38e-1	484	30	30	1020	3.41	12	40.00	78	7.65
48	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0728_1.02	Foxj1	NRTAAACAAANN	2.67e-6	9.33e-4	6.70e-1	350	30	30	1020	27.9	4	13.33	1	0.10
49	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2281_1.02	(Foxh1)_(Homo_sapiens)_(DBD_0.96)	BNSAATCCACA	5.58e-6	9.42e-4	6.77e-1	169	30	30	1020	5.26	8	26.67	31	3.04
50	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6241_1.02	(Foxn3)_(Homo_sapiens)_(DBD_0.45)	WAAAYAAACA	3.64e-6	9.64e-4	6.92e-1	265	30	30	1020	12.4	8	26.67	29	2.84
51	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4599_1.02	(E2f6)_(Homo_sapiens)_(DBD_0.98)	NRGGCGGGARR	1.81e-6	1.02e-3	7.30e-1	561	30	30	1020	7.22	8	26.67	26	2.55
52	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0726_1.02	Foxj3	NRTAAACAWW	3.30e-6	1.02e-3	7.34e-1	310	30	30	1020	1.02	21	70.00	286	28.04
53	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0746_1.02	Gm5294	NNTRTAAACAHN	4.73e-6	1.33e-3	9.57e-1	282	30	30	1020	6.42	6	20.00	12	1.18
54	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1582_1.02	Hmg20b	NWAWATAATWN	8.13e-6	1.57e-3	1.13e0	193	30	30	1020	2.23	13	43.33	109	10.69
55	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2271_1.02	E2f3	SDSYGVGGGCGGGAR	4.05e-6	1.64e-3	1.18e0	405	30	30	1020	6.71	9	30.00	41	4.02
56	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1950_1.02	(Zfp354c)_(Homo_sapiens)_(DBD_0.89)	GTGGAK	4.52e-6	1.95e-3	1.40e0	432	30	30	1020	1.81	8	26.67	30	2.94
57	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6295_1.02	(Hoxb1)_(Homo_sapiens)_(DBD_1.00)	CCATCMATCW	1.22e-5	2.12e-3	1.52e0	173	30	30	1020	1.97	10	33.33	62	6.08
58	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6146_1.02	(Tcfap2d)_(Homo_sapiens)_(DBD_1.00)	ACGSGCCBCRGGCS	7.91e-6	2.21e-3	1.58e0	279	30	30	1020	3.06	11	36.67	74	7.25
59	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0309_1.02	Atf7	NRTKACGTMA	2.26e-5	2.46e-3	1.77e0	109	30	30	1020	2.17	5	16.67	9	0.88
60	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4537_1.02	(E2f4)_(Homo_sapiens)_(DBD_1.00)	SGCGGGAARWTBVRR	9.78e-6	2.58e-3	1.85e0	264	30	30	1020	1.07	18	60.00	222	21.76
61	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6127_1.02	Klf2	DGGGYGKGGCB	5.15e-6	2.60e-3	1.87e0	505	30	30	1020	2.08	17	56.67	188	18.43
62	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5856_1.02	(Sp8)_(Homo_sapiens)_(DBD_1.00)	RGKGGGCGTGGY	5.80e-6	2.71e-3	1.94e0	468	30	30	1020	1.63	18	60.00	214	20.98
63	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1927_1.02	Mycn	RCCACGTG	2.18e-5	2.89e-3	2.08e0	133	30	30	1020	1.36	11	36.67	83	8.14
64	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2386_1.02	Hoxa9	SCCATMAATCA	1.75e-5	2.98e-3	2.14e0	170	30	30	1020	8.26	6	20.00	16	1.57
65	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1519_1.02	(Nfat5)_(Gallus_gallus)_(DBD_1.00)	NTTTTCCAYN	6.94e-6	3.40e-3	2.44e0	490	30	30	1020	1.19	24	80.00	396	38.82
66	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0189_1.02	Id2	RCACGTGR	3.63e-5	4.61e-3	3.31e0	127	30	30	1020	1.88	11	36.67	88	8.63
67	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4536_1.02	(E2f1)_(Homo_sapiens)_(DBD_0.98)	VRRVRGVGCGCGCRS	1.43e-5	5.69e-3	4.08e0	400	30	30	1020	1.3	21	70.00	312	30.59
68	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0429_1.02	Zfp740	NDKGGGGGGG	9.49e-6	7.16e-3	5.14e0	757	30	30	1020	6.37	6	20.00	14	1.37
69	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0434_1.02	Zscan4c	KVTGTGCAB	1.96e-5	7.33e-3	5.26e0	376	30	30	1020	1.06	21	70.00	318	31.18
70	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6212_1.02	(Hif3a)_(Homo_sapiens)_(DBD_0.74)	CMCACGYAYDCAC	4.19e-5	7.64e-3	5.49e0	183	30	30	1020	1.1	14	46.67	149	14.61
71	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1964_1.02	Myc	CCAYGTGSTY	5.05e-5	7.69e-3	5.52e0	153	30	30	1020	1.85	10	33.33	74	7.25
72	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1437_1.02	Nr2f6	NDTGACCYYT	1.79e-5	7.81e-3	5.60e0	437	30	30	1020	5.63	4	13.33	3	0.29
73	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2282_1.02	Foxo1	DGTAAACARSA	2.66e-5	8.70e-3	6.25e0	328	30	30	1020	1.05	20	66.67	294	28.82
74	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0183_1.02	Hey2	GNCACGTGY	9.35e-5	9.22e-3	6.62e0	99	30	30	1020	1.06	10	33.33	80	7.84
75	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2304_1.02	Nr5a2	SCTGRCCTTGAACTY	3.23e-5	9.95e-3	7.15e0	310	30	30	1020	1.59	16	53.33	191	18.73
76	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1529_1.02	Rfx7	VCNTRGCAAC	4.01e-5	1.01e-2	7.22e0	252	30	30	1020	1.35	11	36.67	89	8.73
77	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2283_1.02	(Foxp4)_(Homo_sapiens)_(DBD_0.87)	MWWADGTAAACAAAR	3.51e-5	1.12e-2	8.03e0	320	30	30	1020	14.3	7	23.33	29	2.84

# AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28
# The format of this file is described at http://meme-suite.org/doc/ame-output-format.html.
# ame --control --shuffle-- -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.RedGenes ../gencode.vM4.annotation.TSS-500bp.RedGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme