rank	motif_DB	motif_ID	motif_alt_ID	consensus	p-value	adj_p-value	E-value	tests	FASTA_max	pos	neg	PWM_min	TP	%TP	FP	%FP
1	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2274_1.02	Egr2	GKGYGTGGGYGKRDS	1.22e-13	5.12e-11	3.67e-8	421	48	48	1008	2.77	32	66.67	168	16.67
2	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6136_1.02	Bcl6	RRRDRRVVRRRRRRRRGGAAGWVWKGRARA	7.71e-13	5.70e-10	4.09e-7	739	48	48	1008	4.83	42	87.50	363	36.01
3	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6336_1.02	(Maz)_(Homo_sapiens)_(DBD_0.98)	RGGGDRGGGAGGGRGGG	1.45e-11	9.10e-9	6.53e-6	627	48	48	1008	12.8	31	64.58	187	18.55
4	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6552_1.02	(Zfp148)_(Homo_sapiens)_(DBD_1.00)	KGVGKGGGGGAGGGG	1.84e-11	1.07e-8	7.67e-6	582	48	48	1008	20.5	22	45.83	80	7.94
5	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6482_1.02	(Sp3)_(Homo_sapiens)_(DBD_0.97)	VGVVGGGGGCGGGGCBRGSS	1.12e-10	6.43e-8	4.62e-5	574	48	48	1008	12.3	25	52.08	122	12.10
6	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0434_1.02	Zscan4c	KVTGTGCAB	1.48e-10	6.62e-8	4.76e-5	448	48	48	1008	1.53	28	58.33	162	16.07
7	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6456_1.02	(Rreb1)_(Homo_sapiens)_(DBD_0.99)	DKGKKKGKGGKTGKTTKGGGKT	2.71e-10	1.06e-7	7.58e-5	389	48	48	1008	7.6	27	56.25	153	15.18
8	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2314_1.02	(Sp2)_(Homo_sapiens)_(DBD_1.00)	SSVVRGRGGCGGGRC	3.35e-10	1.96e-7	1.40e-4	583	48	48	1008	7.48	25	52.08	129	12.80
9	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6535_1.02	(Wt1)_(Homo_sapiens)_(DBD_0.99)	GMGGGGGCGKGGG	2.00e-9	1.06e-6	7.63e-4	532	48	48	1008	53	7	14.58	1	0.10
10	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6212_1.02	(Hif3a)_(Homo_sapiens)_(DBD_0.74)	CMCACGYAYDCAC	4.60e-9	1.19e-6	8.55e-4	259	48	48	1008	1.51	26	54.17	161	15.97
11	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6197_1.02	(E4f1)_(Homo_sapiens)_(DBD_0.96)	YGTKACGTC	2.79e-8	1.23e-6	8.83e-4	44	48	48	1008	3.6	7	14.58	3	0.30
12	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4536_1.02	(E2f1)_(Homo_sapiens)_(DBD_0.98)	VRRVRGVGCGCGCRS	3.29e-9	1.42e-6	1.02e-3	431	48	48	1008	4.03	21	43.75	97	9.62
13	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0436_1.02	Zfp105	TTRTTKDHYN	4.36e-9	2.60e-6	1.87e-3	597	48	48	1008	4.94	8	16.67	4	0.40
14	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1882_1.02	(Irf1)_(Homo_sapiens)_(DBD_1.00)	AAANNGAAAGTGAAASYRRRN	8.66e-9	3.33e-6	2.39e-3	385	48	48	1008	1.19	36	75.00	334	33.13
15	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6244_1.02	(Foxm1)_(Homo_sapiens)_(DBD_0.99)	RWAAWCAMWCAAV	1.52e-8	8.45e-6	6.07e-3	557	48	48	1008	10.7	11	22.92	19	1.88
16	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6241_1.02	(Foxn3)_(Homo_sapiens)_(DBD_0.45)	WAAAYAAACA	2.47e-8	9.54e-6	6.85e-3	387	48	48	1008	26.9	8	16.67	6	0.60
17	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6464_1.02	(Smad2)_(Homo_sapiens)_(DBD_0.99)	GTGTCHGKCTV	2.46e-8	1.12e-5	8.01e-3	454	48	48	1008	1.87	25	52.08	161	15.97
18	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0131_1.02	Ahctf1	AAATAAAT	2.14e-8	1.15e-5	8.27e-3	538	48	48	1008	6.25	12	25.00	26	2.58
19	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0730_1.02	Foxo4	NNRWMAACAN	4.81e-8	2.50e-5	1.79e-2	519	48	48	1008	2.37	16	33.33	61	6.05
20	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2271_1.02	E2f3	SDSYGVGGGCGGGAR	6.38e-8	2.61e-5	1.87e-2	409	48	48	1008	3.62	22	45.83	129	12.80
21	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0437_1.02	Zfp637	TATRTATRT	7.42e-8	2.79e-5	2.00e-2	376	48	48	1008	2.72	7	14.58	4	0.40
22	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0732_1.02	Foxc2	WRNRTMAAYA	1.05e-7	5.41e-5	3.88e-2	517	48	48	1008	2.69	16	33.33	65	6.45
23	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6237_1.02	(Foxd3)_(Homo_sapiens)_(DBD_1.00)	AAACAAACA	1.58e-7	7.68e-5	5.51e-2	486	48	48	1008	50.8	5	10.42	0	0.00
24	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0723_1.02	Foxg1	NNRWMAAYAN	2.06e-7	1.09e-4	7.82e-2	530	48	48	1008	1.79	17	35.42	79	7.84
25	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0721_1.02	Foxj2	RTMAACANN	2.16e-7	1.12e-4	8.04e-2	518	48	48	1008	2.1	16	33.33	69	6.85
26	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2287_1.02	Hoxc9	RGCCATAAATCAB	5.52e-7	1.21e-4	8.68e-2	219	48	48	1008	1.31	22	45.83	147	14.58
27	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0734_1.02	Foxc1	WRNRTMAAYA	2.58e-7	1.35e-4	9.73e-2	526	48	48	1008	2.41	16	33.33	70	6.94
28	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5116_1.02	(Atoh8)_(Drosophila_melanogaster)_(DBD_0.70)	RCCACCTGK	3.02e-7	1.39e-4	1.00e-1	462	48	48	1008	5.61	9	18.75	15	1.49
29	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0426_1.02	Zfp3	DGTGTGCGYNN	9.15e-7	1.48e-4	1.06e-1	162	48	48	1008	4.89	5	10.42	1	0.10
30	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6123_1.02	Zfp281	GRGKTGGGGGAGGGG	3.02e-7	1.57e-4	1.13e-1	521	48	48	1008	225	9	18.75	15	1.49
31	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4569_1.02	(Hsf1)_(Homo_sapiens)_(DBD_1.00)	GTCSYGGGTTCGADTCCC	3.55e-6	2.16e-4	1.55e-1	61	48	48	1008	4.41	7	14.58	10	0.99
32	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0423_1.02	Zfp410	TGGGATGG	1.22e-6	2.18e-4	1.56e-1	179	48	48	1008	3.6	15	31.25	69	6.85
33	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0214_1.02	Tcf21	AACAKMTGK	1.13e-6	2.29e-4	1.64e-1	202	48	48	1008	5.54	10	20.83	25	2.48
34	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0133_1.02	Phf21a	NNWATATWAATT	6.24e-7	2.38e-4	1.71e-1	382	48	48	1008	2.57	23	47.92	162	16.07
35	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6234_1.02	(Foxa3)_(Homo_sapiens)_(DBD_1.00)	RVWAARYAAAYAD	6.95e-7	3.09e-4	2.22e-1	444	48	48	1008	15.3	7	14.58	7	0.69
36	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2391_1.02	(Klf5)_(Homo_sapiens)_(DBD_0.95)	DGGGHGGGGC	6.07e-7	3.80e-4	2.73e-1	626	48	48	1008	11	11	22.92	30	2.98
37	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0737_1.02	Foxb1	WRWGTAAAYA	8.78e-7	4.05e-4	2.91e-1	461	48	48	1008	2.47	18	37.50	100	9.92
38	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6239_1.02	(Foxf2)_(Homo_sapiens)_(DBD_1.00)	HWADGTAAACA	1.69e-6	6.01e-4	4.31e-1	356	48	48	1008	3.17	18	37.50	105	10.42
39	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5323_1.02	(Creb3)_(Homo_sapiens)_(DBD_0.82)	KGRTGACGTCAYNV	1.83e-5	7.12e-4	5.11e-1	39	48	48	1008	56.3	4	8.33	1	0.10
40	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0746_1.02	Gm5294	NNTRTAAACAHN	1.96e-6	7.99e-4	5.74e-1	409	48	48	1008	3.95	13	27.08	52	5.16
41	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6325_1.02	(Klf6)_(Homo_sapiens)_(DBD_1.00)	GGGGGCKG	1.45e-6	8.71e-4	6.26e-1	603	48	48	1008	3.1	24	50.00	185	18.35
42	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5593_1.02	(Klf16)_(Homo_sapiens)_(DBD_0.92)	GGGGGCGTGKC	1.69e-6	8.82e-4	6.33e-1	521	48	48	1008	2.9	27	56.25	234	23.21
43	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6323_1.02	(Klf3)_(Homo_sapiens)_(DBD_1.00)	HRCYWGGGTGKGGCT	3.13e-6	9.93e-4	7.13e-1	317	48	48	1008	1.31	26	54.17	225	22.32
44	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4599_1.02	(E2f6)_(Homo_sapiens)_(DBD_0.98)	NRGGCGGGARR	2.41e-6	1.23e-3	8.80e-1	509	48	48	1008	2.98	21	43.75	147	14.58
45	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0747_1.02	Foxl1	WNNRTAAAYA	2.66e-6	1.32e-3	9.48e-1	496	48	48	1008	2.95	16	33.33	85	8.43
46	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6201_1.02	(Egr4)_(Homo_sapiens)_(DBD_1.00)	GGSGGYRGGGM	3.38e-6	1.52e-3	1.09e0	450	48	48	1008	9.58	13	27.08	55	5.46
47	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0756_1.02	(ENSMUSG00000090020)_(Strongylocentrotus_purpuratus)_(DBD_0.44)	NNHMACANN	3.06e-6	1.59e-3	1.14e0	518	48	48	1008	1.41	16	33.33	86	8.53
48	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1965_1.02	(Foxa1)_(Homo_sapiens)_(DBD_1.00)	HWRWGTAAACANVNN	5.98e-6	1.96e-3	1.41e0	329	48	48	1008	2.88	17	35.42	103	10.22
49	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0704_1.02	Elf5	WNVMGGAARY	3.66e-6	2.34e-3	1.68e0	640	48	48	1008	2.15	9	18.75	22	2.18
50	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0735_1.02	Foxo6	NNVWMAAYAN	4.68e-6	2.45e-3	1.76e0	525	48	48	1008	1.53	17	35.42	101	10.02
51	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6037_1.02	Irx1	TTTKTCATGTWR	1.12e-5	2.62e-3	1.88e0	235	48	48	1008	6.61	9	18.75	26	2.58
52	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5302_1.02	(Batf3)_(Homo_sapiens)_(DBD_0.75)	TGATGACGTCATCA	9.82e-5	2.65e-3	1.90e0	27	48	48	1008	3.59	5	10.42	7	0.69
53	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4453_1.02	(Bcl11a)_(Homo_sapiens)_(DBD_1.00)	ADGRGGAASTGAAAV	5.30e-6	2.74e-3	1.97e0	518	48	48	1008	11.4	11	22.92	39	3.87
54	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6154_1.02	(Atf5)_(Homo_sapiens)_(DBD_0.98)	TAAGGRAGARGK	4.66e-6	2.76e-3	1.98e0	593	48	48	1008	1.81	31	64.58	318	31.55
55	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2308_1.02	Rfx1	GTYNCCATGGCAAC	1.73e-5	3.27e-3	2.35e0	189	48	48	1008	15.3	5	10.42	4	0.40
56	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0392_1.02	Sp1	GGGGGCGKG	8.46e-6	3.93e-3	2.82e0	465	48	48	1008	8.18	8	16.67	18	1.79
57	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5209_1.02	(Sp5)_(Drosophila_melanogaster)_(DBD_0.93)	GKGGGCGKRKC	1.01e-5	3.97e-3	2.85e0	395	48	48	1008	1.28	29	60.42	292	28.97
58	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2298_1.02	Meis1	NVNDGASTGACAGSW	1.15e-5	4.00e-3	2.87e0	347	48	48	1008	1.16	28	58.33	276	27.38
59	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6337_1.02	(Mbd2)_(Homo_sapiens)_(DBD_0.99)	SSGKCCGGMGR	1.27e-5	4.37e-3	3.14e0	344	48	48	1008	9.41	7	14.58	13	1.29
60	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0104_1.02	Arid3b	AWATTAATWAN	1.29e-5	4.40e-3	3.16e0	341	48	48	1008	3.13	19	39.58	136	13.49
61	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1263_1.02	Irf3	RAWNSGAAAC	9.82e-6	5.18e-3	3.72e0	529	48	48	1008	1.47	18	37.50	120	11.90
62	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0177_1.02	Twist2	NMCATATGTN	3.65e-5	5.68e-3	4.08e0	156	48	48	1008	6.37	6	12.50	10	0.99
63	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0390_1.02	Zscan4	ATGTGCAC	2.55e-5	5.72e-3	4.11e0	225	48	48	1008	1.1	21	43.75	172	17.06
64	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0417_1.02	Egr1	NGMGKGGGYG	1.09e-5	6.66e-3	4.79e0	611	48	48	1008	2.66	15	31.25	84	8.33
65	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5998_1.02	9430076C15Rik	DRTGACGTCATN	1.19e-4	7.11e-3	5.11e0	60	48	48	1008	1.49	9	18.75	37	3.67
66	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6399_1.02	(Onecut2)_(Homo_sapiens)_(DBD_1.00)	DKSWTKWTATKGATTTTWYYT	3.65e-5	7.53e-3	5.41e0	207	48	48	1008	61.7	6	12.50	10	0.99
67	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0714_1.02	Gm4881	NDBCGGAWRY	1.85e-5	7.77e-3	5.58e0	423	48	48	1008	1.7	7	14.58	14	1.39
68	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0706_1.02	Elf4	NNSMGGAARH	1.27e-5	8.06e-3	5.78e0	635	48	48	1008	1.7	7	14.58	13	1.29
69	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6129_1.02	Sox2	TTTGCATRACAAWRG	1.73e-5	8.06e-3	5.79e0	467	48	48	1008	25.7	5	10.42	4	0.40
70	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5446_1.02	(Foxd1)_(Homo_sapiens)_(DBD_0.99)	GTAAACA	2.04e-5	8.13e-3	5.83e0	399	48	48	1008	1.91	18	37.50	127	12.60
71	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5970_1.02	(Zfp282)_(Homo_sapiens)_(DBD_0.98)	VTCGTGTTRKGGGAAAG	1.16e-4	1.07e-2	7.69e0	93	48	48	1008	5.74	8	16.67	28	2.78
72	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1922_1.02	Ets1	VRVRCAGGAAGTGGN	2.32e-5	1.18e-2	8.49e0	512	48	48	1008	1.08	36	75.00	446	44.25
73	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2299_1.02	Myod1	NRNRRCAGCTGSN	2.96e-5	1.24e-2	8.89e0	421	48	48	1008	4.4	15	31.25	92	9.13
74	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6228_1.02	(Fosb)_(Homo_sapiens)_(DBD_1.00)	CTGACTCAYV	4.08e-5	1.25e-2	8.95e0	307	48	48	1008	3.09	11	22.92	50	4.96
75	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6103_1.02	Trp53	ACWTGTYHHHDGACWTGT	9.91e-5	1.26e-2	9.05e0	128	48	48	1008	3.95	9	18.75	36	3.57
76	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1879_1.02	Foxa2	VCWRWGTAAACA	3.92e-5	1.27e-2	9.13e0	326	48	48	1008	1.11	27	56.25	276	27.38
77	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6285_1.02	(Onecut1)_(Homo_sapiens)_(DBD_1.00)	WWTATTGATTTWDH	4.56e-5	1.30e-2	9.36e0	288	48	48	1008	7.2	10	20.83	41	4.07

# AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28
# The format of this file is described at http://meme-suite.org/doc/ame-output-format.html.
# ame --control --shuffle-- -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.MuscleFinalGenes ../gencode.vM4.annotation.TSS-500bp.MuscleFinalGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme