## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.EstimateLibraryComplexity INPUT=[transverse_colon-ENCSR386HAZ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=transverse_colon-ENCSR386HAZ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.est_lib_complex_metrics.txt MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Mon Nov 25 10:30:59 PST 2019 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown 0 50358448 0 0 6823051 6036500 0.13549 1233947127 ## HISTOGRAM java.lang.Integer duplication_group_count Unknown 1 37666076 2 5065683 3 689656 4 95914 5 13995 6 2378 7 477 8 244 9 133 10 99 11 88 12 62 13 50 14 49 15 49 16 27 17 29 18 30 19 21 20 26 21 29 22 24 23 22 24 23 25 13 26 20 27 13 28 14 29 16 30 6 31 4 32 9 33 8 34 9 35 5 36 2 37 4 38 11 39 1 40 3 41 6 42 6 43 4 44 3 46 4 47 3 48 5 49 5 50 2 51 4 52 5 53 1 54 4 55 1 56 1 57 3 59 1 61 2 62 4 65 3 68 3 71 1 72 1 73 2 75 2 76 1 77 1 78 4 82 1 85 1 86 1 87 1 90 1 91 1 92 1 94 1 97 1 99 1 103 1 104 1 106 2 130 1 134 1 135 1 145 1 156 1 308 1