## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[thyroid_gland-ENCSR914DTI-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=thyroid_gland-ENCSR914DTI-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=thyroid_gland-ENCSR914DTI-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	36089729	0	0	6027834	5163155	0.167024	542710610

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.161468
2.0	2.248211
3.0	3.265038
4.0	4.216446
5.0	5.106644
6.0	5.93957
7.0	6.718908
8.0	7.448107
9.0	8.130392
10.0	8.768782
11.0	9.3661
12.0	9.924989
13.0	10.447921
14.0	10.937209
15.0	11.395019
16.0	11.823375
17.0	12.224172
18.0	12.599184
19.0	12.950068
20.0	13.278378
21.0	13.585566
22.0	13.87299
23.0	14.141923
24.0	14.393554
25.0	14.628995
26.0	14.84929
27.0	15.055411
28.0	15.248271
29.0	15.428724
30.0	15.597567
31.0	15.755547
32.0	15.903363
33.0	16.041669
34.0	16.171077
35.0	16.29216
36.0	16.405453
37.0	16.511456
38.0	16.61064
39.0	16.703443
40.0	16.790275
41.0	16.871521
42.0	16.94754
43.0	17.018668
44.0	17.08522
45.0	17.14749
46.0	17.205754
47.0	17.260269
48.0	17.311277
49.0	17.359004
50.0	17.40366
51.0	17.445443
52.0	17.484538
53.0	17.521117
54.0	17.555343
55.0	17.587368
56.0	17.617332
57.0	17.645368
58.0	17.6716
59.0	17.696145
60.0	17.71911
61.0	17.740598
62.0	17.760704
63.0	17.779516
64.0	17.797118
65.0	17.813587
66.0	17.828997
67.0	17.843415
68.0	17.856906
69.0	17.869529
70.0	17.88134
71.0	17.892391
72.0	17.90273
73.0	17.912405
74.0	17.921457
75.0	17.929927
76.0	17.937852
77.0	17.945267
78.0	17.952205
79.0	17.958697
80.0	17.964771
81.0	17.970454
82.0	17.975772
83.0	17.980747
84.0	17.985402
85.0	17.989758
86.0	17.993834
87.0	17.997647
88.0	18.001215
89.0	18.004554
90.0	18.007678
91.0	18.0106
92.0	18.013335
93.0	18.015894
94.0	18.018288
95.0	18.020528
96.0	18.022624
97.0	18.024585
98.0	18.02642
99.0	18.028137
100.0	18.029744