## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.EstimateLibraryComplexity INPUT=[thyroid_gland-ENCSR474XFV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=thyroid_gland-ENCSR474XFV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.est_lib_complex_metrics.txt    MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Nov 25 10:30:59 PST 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown	0	46662830	0	0	1688748	365865	0.03619	794620986

## HISTOGRAM	java.lang.Integer
duplication_group_count	Unknown
1	43426459
2	1442992
3	84083
4	13651
5	3849
6	1494
7	625
8	349
9	180
10	84
11	63
12	51
13	25
14	24
15	25
16	11
17	9
18	13
19	8
20	10
21	8
22	7
23	6
24	7
25	2
26	4
27	3
28	5
29	5
30	3
31	1
32	2
33	5
34	3
35	2
36	2
37	1
39	1
40	3
41	3
42	3
43	1
46	1
48	1
49	2
51	1
52	1
57	1
58	1
59	1
60	1
63	1
66	1
74	1
76	1
86	1
88	1
100	1
106	1
109	1
113	1
122	1
129	1
132	2
151	1