## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[thoracic_aorta-ENCSR344ZTM-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=thoracic_aorta-ENCSR344ZTM-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=thoracic_aorta-ENCSR344ZTM-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	24270042	0	0	166182	69937	0.006847	3034398104

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.002878
2.0	1.997767
3.0	2.984731
4.0	3.963832
5.0	4.935133
6.0	5.898696
7.0	6.854583
8.0	7.802855
9.0	8.743573
10.0	9.676796
11.0	10.602585
12.0	11.520999
13.0	12.432097
14.0	13.335936
15.0	14.232575
16.0	15.122071
17.0	16.004481
18.0	16.879861
19.0	17.748268
20.0	18.609756
21.0	19.464382
22.0	20.312199
23.0	21.153262
24.0	21.987625
25.0	22.815341
26.0	23.636463
27.0	24.451044
28.0	25.259136
29.0	26.06079
30.0	26.856057
31.0	27.64499
32.0	28.427637
33.0	29.204049
34.0	29.974276
35.0	30.738368
36.0	31.496372
37.0	32.248337
38.0	32.994312
39.0	33.734345
40.0	34.468482
41.0	35.19677
42.0	35.919257
43.0	36.635988
44.0	37.347009
45.0	38.052367
46.0	38.752104
47.0	39.446268
48.0	40.134901
49.0	40.818049
50.0	41.495754
51.0	42.168061
52.0	42.835011
53.0	43.496649
54.0	44.153015
55.0	44.804153
56.0	45.450103
57.0	46.090908
58.0	46.726608
59.0	47.357243
60.0	47.982854
61.0	48.603482
62.0	49.219165
63.0	49.829944
64.0	50.435857
65.0	51.036943
66.0	51.633241
67.0	52.224788
68.0	52.811622
69.0	53.393782
70.0	53.971304
71.0	54.544225
72.0	55.112582
73.0	55.676412
74.0	56.235749
75.0	56.790631
76.0	57.341092
77.0	57.887168
78.0	58.428894
79.0	58.966304
80.0	59.499434
81.0	60.028315
82.0	60.552984
83.0	61.073473
84.0	61.589815
85.0	62.102044
86.0	62.610193
87.0	63.114293
88.0	63.614378
89.0	64.110478
90.0	64.602627
91.0	65.090854
92.0	65.575193
93.0	66.055673
94.0	66.532325
95.0	67.00518
96.0	67.474268
97.0	67.939619
98.0	68.401263
99.0	68.85923
100.0	69.313548