## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.EstimateLibraryComplexity INPUT=[testis-ENCSR210NKB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=testis-ENCSR210NKB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.est_lib_complex_metrics.txt MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Mon Nov 25 10:30:59 PST 2019 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown 0 34106243 0 0 1073822 854772 0.031485 2512666400 ## HISTOGRAM java.lang.Integer duplication_group_count Unknown 1 32000591 2 999684 3 29535 4 1434 5 332 6 192 7 125 8 76 9 81 10 51 11 44 12 37 13 31 14 27 15 18 16 20 17 11 18 12 19 12 20 18 21 6 22 8 23 11 24 6 25 5 26 4 27 3 28 3 29 6 31 3 32 3 33 2 34 5 35 1 36 2 38 2 39 1 41 2 42 2 44 1 45 3 46 1 47 1 48 2 49 1 50 1 52 1 53 1 54 1 55 2 56 2 57 2 62 1 64 1 66 2 68 2 69 1 74 1 76 1 92 1 111 1 125 1 139 2 177 1 182 1