## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[testis-ENCSR210NKB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=testis-ENCSR210NKB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=testis-ENCSR210NKB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:17 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	36747487	0	0	1258450	990285	0.034246	2372004025

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.027481
2.0	2.039166
3.0	3.035299
4.0	4.016119
5.0	4.981861
6.0	5.932757
7.0	6.869034
8.0	7.790919
9.0	8.698632
10.0	9.59239
11.0	10.472409
12.0	11.3389
13.0	12.19207
14.0	13.032125
15.0	13.859266
16.0	14.673691
17.0	15.475596
18.0	16.265174
19.0	17.042614
20.0	17.808102
21.0	18.561823
22.0	19.303957
23.0	20.034682
24.0	20.754174
25.0	21.462605
26.0	22.160146
27.0	22.846963
28.0	23.523223
29.0	24.189086
30.0	24.844713
31.0	25.490262
32.0	26.125886
33.0	26.751739
34.0	27.367971
35.0	27.97473
36.0	28.572162
37.0	29.160409
38.0	29.739613
39.0	30.309913
40.0	30.871446
41.0	31.424347
42.0	31.968748
43.0	32.50478
44.0	33.032572
45.0	33.55225
46.0	34.063939
47.0	34.567763
48.0	35.063841
49.0	35.552293
50.0	36.033236
51.0	36.506785
52.0	36.973055
53.0	37.432157
54.0	37.884201
55.0	38.329297
56.0	38.767549
57.0	39.199065
58.0	39.623947
59.0	40.042297
60.0	40.454217
61.0	40.859804
62.0	41.259155
63.0	41.652368
64.0	42.039536
65.0	42.420752
66.0	42.796108
67.0	43.165693
68.0	43.529597
69.0	43.887907
70.0	44.240709
71.0	44.588086
72.0	44.930124
73.0	45.266904
74.0	45.598506
75.0	45.925011
76.0	46.246497
77.0	46.56304
78.0	46.874717
79.0	47.181603
80.0	47.483772
81.0	47.781295
82.0	48.074244
83.0	48.36269
84.0	48.646701
85.0	48.926347
86.0	49.201694
87.0	49.472807
88.0	49.739753
89.0	50.002596
90.0	50.261398
91.0	50.516221
92.0	50.767127
93.0	51.014175
94.0	51.257426
95.0	51.496938
96.0	51.732767
97.0	51.964971
98.0	52.193606
99.0	52.418726
100.0	52.640385