## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[sigmoid_colon-ENCSR548QCP-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=sigmoid_colon-ENCSR548QCP-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=sigmoid_colon-ENCSR548QCP-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:25 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	76544754	0	0	9555185	8238482	0.124831	1748911019

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.117993
2.0	2.18811
3.0	3.212401
4.0	4.192828
5.0	5.131271
6.0	6.029527
7.0	6.889316
8.0	7.712287
9.0	8.500016
10.0	9.254011
11.0	9.975718
12.0	10.666519
13.0	11.327738
14.0	11.960642
15.0	12.566442
16.0	13.146301
17.0	13.701328
18.0	14.232587
19.0	14.741095
20.0	15.227828
21.0	15.693718
22.0	16.139656
23.0	16.566498
24.0	16.975062
25.0	17.366129
26.0	17.74045
27.0	18.098741
28.0	18.441689
29.0	18.769951
30.0	19.084155
31.0	19.384905
32.0	19.672775
33.0	19.948318
34.0	20.212061
35.0	20.46451
36.0	20.706148
37.0	20.937439
38.0	21.158825
39.0	21.370731
40.0	21.573562
41.0	21.767707
42.0	21.953538
43.0	22.131412
44.0	22.301668
45.0	22.464633
46.0	22.62062
47.0	22.769927
48.0	22.91284
49.0	23.049633
50.0	23.180568
51.0	23.305897
52.0	23.425858
53.0	23.540682
54.0	23.650589
55.0	23.755789
56.0	23.856485
57.0	23.952868
58.0	24.045124
59.0	24.133429
60.0	24.217953
61.0	24.298857
62.0	24.376296
63.0	24.45042
64.0	24.521369
65.0	24.58928
66.0	24.654282
67.0	24.716501
68.0	24.776056
69.0	24.83306
70.0	24.887624
71.0	24.93985
72.0	24.989841
73.0	25.03769
74.0	25.08349
75.0	25.127329
76.0	25.169291
77.0	25.209456
78.0	25.247901
79.0	25.284699
80.0	25.319922
81.0	25.353636
82.0	25.385907
83.0	25.416795
84.0	25.446361
85.0	25.474661
86.0	25.501749
87.0	25.527677
88.0	25.552495
89.0	25.576249
90.0	25.598987
91.0	25.620751
92.0	25.641583
93.0	25.661523
94.0	25.680608
95.0	25.698877
96.0	25.716363
97.0	25.733101
98.0	25.749121
99.0	25.764456
100.0	25.779134