## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[sigmoid_colon-ENCSR355SGJ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=sigmoid_colon-ENCSR355SGJ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=sigmoid_colon-ENCSR355SGJ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:25 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	63200737	0	0	9242844	7929714	0.146246	1144710183

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.13955
2.0	2.217889
3.0	3.238306
4.0	4.203912
5.0	5.11765
6.0	5.982307
7.0	6.80052
8.0	7.574782
9.0	8.307455
10.0	9.000773
11.0	9.656849
12.0	10.277685
13.0	10.865173
14.0	11.421104
15.0	11.947173
16.0	12.444985
17.0	12.916057
18.0	13.361825
19.0	13.783649
20.0	14.182815
21.0	14.56054
22.0	14.917976
23.0	15.256212
24.0	15.576279
25.0	15.879155
26.0	16.165761
27.0	16.436973
28.0	16.693617
29.0	16.936475
30.0	17.166288
31.0	17.383756
32.0	17.589544
33.0	17.784278
34.0	17.968551
35.0	18.142927
36.0	18.307935
37.0	18.464081
38.0	18.611839
39.0	18.751661
40.0	18.883971
41.0	19.009175
42.0	19.127654
43.0	19.239769
44.0	19.345861
45.0	19.446255
46.0	19.541256
47.0	19.631154
48.0	19.716223
49.0	19.796723
50.0	19.872899
51.0	19.944983
52.0	20.013195
53.0	20.077743
54.0	20.138824
55.0	20.196624
56.0	20.251319
57.0	20.303076
58.0	20.352053
59.0	20.3984
60.0	20.442257
61.0	20.483758
62.0	20.52303
63.0	20.560192
64.0	20.595359
65.0	20.628636
66.0	20.660126
67.0	20.689924
68.0	20.718122
69.0	20.744805
70.0	20.770055
71.0	20.793949
72.0	20.816559
73.0	20.837954
74.0	20.858201
75.0	20.87736
76.0	20.895489
77.0	20.912645
78.0	20.92888
79.0	20.944242
80.0	20.958779
81.0	20.972536
82.0	20.985553
83.0	20.997871
84.0	21.009528
85.0	21.020558
86.0	21.030996
87.0	21.040873
88.0	21.05022
89.0	21.059064
90.0	21.067434
91.0	21.075354
92.0	21.082849
93.0	21.08994
94.0	21.096652
95.0	21.103002
96.0	21.109012
97.0	21.114698
98.0	21.120079
99.0	21.125172
100.0	21.12999