## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ovary-ENCSR490MSG-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=ovary-ENCSR490MSG-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=ovary-ENCSR490MSG-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	52787547	0	0	6625923	4653083	0.125521	571049025

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.092275
2.0	2.088107
3.0	2.996011
4.0	3.823751
5.0	4.578405
6.0	5.266427
7.0	5.893699
8.0	6.465585
9.0	6.986977
10.0	7.462332
11.0	7.895715
12.0	8.290832
13.0	8.651062
14.0	8.979485
15.0	9.27891
16.0	9.551897
17.0	9.80078
18.0	10.027688
19.0	10.234561
20.0	10.423168
21.0	10.595122
22.0	10.751893
23.0	10.894822
24.0	11.025131
25.0	11.143934
26.0	11.252247
27.0	11.350997
28.0	11.441027
29.0	11.523108
30.0	11.597942
31.0	11.666169
32.0	11.728371
33.0	11.785081
34.0	11.836783
35.0	11.883921
36.0	11.926897
37.0	11.966078
38.0	12.001799
39.0	12.034367
40.0	12.064058
41.0	12.091129
42.0	12.115809
43.0	12.13831
44.0	12.158824
45.0	12.177527
46.0	12.194578
47.0	12.210124
48.0	12.224297
49.0	12.237219
50.0	12.249
51.0	12.259741
52.0	12.269533
53.0	12.278461
54.0	12.2866
55.0	12.294021
56.0	12.300786
57.0	12.306954
58.0	12.312578
59.0	12.317705
60.0	12.322379
61.0	12.326641
62.0	12.330526
63.0	12.334068
64.0	12.337298
65.0	12.340242
66.0	12.342927
67.0	12.345374
68.0	12.347605
69.0	12.349639
70.0	12.351494
71.0	12.353185
72.0	12.354727
73.0	12.356132
74.0	12.357413
75.0	12.358582
76.0	12.359647
77.0	12.360618
78.0	12.361503
79.0	12.36231
80.0	12.363046
81.0	12.363717
82.0	12.364329
83.0	12.364886
84.0	12.365395
85.0	12.365858
86.0	12.366281
87.0	12.366666
88.0	12.367017
89.0	12.367337
90.0	12.367629
91.0	12.367896
92.0	12.368138
93.0	12.36836
94.0	12.368561
95.0	12.368745
96.0	12.368913
97.0	12.369066
98.0	12.369205
99.0	12.369332
100.0	12.369448