File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Biosample genetic modifications methods Biosample genetic modifications categories Biosample genetic modifications targets Biosample genetic modifications gene targets Biosample genetic modifications site coordinates Biosample genetic modifications zygosity Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Genome annotation Platform Controlled by File Status s3_uri Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF457QZC fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF716WPO 2677561531 Michael Snyder, Stanford 036b8e4ae03b08bd638ce1029fff5681 https://www.encodeproject.org/files/ENCFF457QZC/@@download/ENCFF457QZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/d1728ee3-b46c-4bb1-9c82-b08f0673f142/ENCFF457QZC.fastq.gz experiment not submitted to GEO ENCFF716WPO fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF457QZC 2690636398 Michael Snyder, Stanford 1ff86ff2d3f4baaa07c28fba19591853 https://www.encodeproject.org/files/ENCFF716WPO/@@download/ENCFF716WPO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/bb98f237-c0d1-4a7a-baf3-d582cf1b3414/ENCFF716WPO.fastq.gz experiment not submitted to GEO ENCFF173WNV fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF927OCA 2763375593 Michael Snyder, Stanford 9010d51dfa3cba17654408891341cf4e https://www.encodeproject.org/files/ENCFF173WNV/@@download/ENCFF173WNV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/16b9c8ab-1082-45f9-8b6d-f48df847f1a4/ENCFF173WNV.fastq.gz experiment not submitted to GEO ENCFF927OCA fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF173WNV 2650986498 Michael Snyder, Stanford 51f132720a38ba91bbcb9c836e07ff6b https://www.encodeproject.org/files/ENCFF927OCA/@@download/ENCFF927OCA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/34354a80-e4e3-4850-b1a2-f654d16ded6c/ENCFF927OCA.fastq.gz experiment not submitted to GEO ENCFF711SUI bam alignments ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF173WNV, ENCFF457QZC, ENCFF716WPO, ENCFF927OCA 4765133137 Anshul Kundaje, Stanford 989c2899cb9a36636d1d711c880071be https://www.encodeproject.org/files/ENCFF711SUI/@@download/ENCFF711SUI.bam GRCh38 released s3://encode-public/2016/12/22/a5461a0c-ba61-468a-955b-fbe766b34228/ENCFF711SUI.bam experiment not submitted to GEO ENCFF956ZBY bigWig signal p-value ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF711SUI 650825358 Anshul Kundaje, Stanford 96ebcba32ff39d923967cb22d907fd25 https://www.encodeproject.org/files/ENCFF956ZBY/@@download/ENCFF956ZBY.bigWig GRCh38 released s3://encode-public/2016/12/22/2736e103-2312-4f35-b797-deb4af16ddec/ENCFF956ZBY.bigWig experiment not submitted to GEO ENCFF983OJK bigWig fold change over control ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF711SUI 803024428 Anshul Kundaje, Stanford 7f814e45e352e88180fd6bc0633ba7f9 https://www.encodeproject.org/files/ENCFF983OJK/@@download/ENCFF983OJK.bigWig GRCh38 released s3://encode-public/2016/12/22/3cc58e38-d8a4-4682-ab96-fda24a287881/ENCFF983OJK.bigWig experiment not submitted to GEO ENCFF075UOA fastq reads ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF766IGD 2334246949 Michael Snyder, Stanford fe1f83adf12b1cdaeb3e6177fa9bfe47 https://www.encodeproject.org/files/ENCFF075UOA/@@download/ENCFF075UOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/48ffbdf7-77d3-498f-b38b-1c42cb0d74a8/ENCFF075UOA.fastq.gz experiment not submitted to GEO ENCFF766IGD fastq reads ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF075UOA 2070030981 Michael Snyder, Stanford d12a684f8e08be977e45ea792304bdba https://www.encodeproject.org/files/ENCFF766IGD/@@download/ENCFF766IGD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/6f649600-3f95-433e-b6f8-cdfbe37f3e61/ENCFF766IGD.fastq.gz experiment not submitted to GEO ENCFF310VHO bam alignments ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF075UOA, ENCFF766IGD 2081453094 Anshul Kundaje, Stanford 6c960647126d67597cdda307a035a76e https://www.encodeproject.org/files/ENCFF310VHO/@@download/ENCFF310VHO.bam GRCh38 released s3://encode-public/2016/12/22/d172e67d-65e5-4521-bf62-1cd567b93c09/ENCFF310VHO.bam experiment not submitted to GEO ENCFF535HRH bigWig signal p-value ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF310VHO 400933175 Anshul Kundaje, Stanford f5873de484a9b519f94ed587279bbd2e https://www.encodeproject.org/files/ENCFF535HRH/@@download/ENCFF535HRH.bigWig GRCh38 released s3://encode-public/2016/12/22/1b98ade9-c681-4541-9bc7-d7be7a91ed27/ENCFF535HRH.bigWig experiment not submitted to GEO ENCFF996TBQ bigWig fold change over control ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF310VHO 487475585 Anshul Kundaje, Stanford ccc49e1613521dc9442955a5f88fd4b9 https://www.encodeproject.org/files/ENCFF996TBQ/@@download/ENCFF996TBQ.bigWig GRCh38 released s3://encode-public/2016/12/22/8cf8e176-53aa-4cdd-a8cf-4c328ab7b43f/ENCFF996TBQ.bigWig experiment not submitted to GEO ENCFF051QFS fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF085AWY 5369577024 Michael Snyder, Stanford 594ca6582e3a19cc9d8348198367ec24 https://www.encodeproject.org/files/ENCFF051QFS/@@download/ENCFF051QFS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/fcef8c51-3b5c-431a-8bc5-dfdab466c515/ENCFF051QFS.fastq.gz experiment not submitted to GEO ENCFF898MTS fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF228CZJ 1985999510 Michael Snyder, Stanford 036c55adaa82ddb93650bc8b6d27d1c4 https://www.encodeproject.org/files/ENCFF898MTS/@@download/ENCFF898MTS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/bbd063fb-5a52-405d-aab7-0cfbbc46e66e/ENCFF898MTS.fastq.gz experiment not submitted to GEO ENCFF085AWY fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF051QFS 4970821795 Michael Snyder, Stanford 26b591d5519fc3b9d86013d96198403c https://www.encodeproject.org/files/ENCFF085AWY/@@download/ENCFF085AWY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/9217b538-588b-401e-92db-a68f023c3785/ENCFF085AWY.fastq.gz experiment not submitted to GEO ENCFF228CZJ fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF898MTS 1900918389 Michael Snyder, Stanford df951e1d9d2c23d586a1ece27930ac8b https://www.encodeproject.org/files/ENCFF228CZJ/@@download/ENCFF228CZJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/d4ad9ded-298c-4b7e-bef7-a6a71a5763e6/ENCFF228CZJ.fastq.gz experiment not submitted to GEO ENCFF436NOT bam alignments ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF051QFS, ENCFF085AWY, ENCFF228CZJ, ENCFF898MTS 9538419629 Anshul Kundaje, Stanford f2c07557b0ed6fa6f7dec0fb7b91e48f https://www.encodeproject.org/files/ENCFF436NOT/@@download/ENCFF436NOT.bam GRCh38 released s3://encode-public/2016/12/22/471d26b0-89bf-4463-96bf-2a260b4338ec/ENCFF436NOT.bam experiment not submitted to GEO ENCFF663AYS bigWig fold change over control ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF436NOT 1558408590 Anshul Kundaje, Stanford 7aec3659eb4c9cd45c0c76ecb053d5a3 https://www.encodeproject.org/files/ENCFF663AYS/@@download/ENCFF663AYS.bigWig GRCh38 released s3://encode-public/2016/12/22/ff856bd1-f46c-4511-8f7f-dc3119f21400/ENCFF663AYS.bigWig experiment not submitted to GEO ENCFF971AWR bigWig signal p-value ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF436NOT 1339518134 Anshul Kundaje, Stanford fbf8e56eb6321a0fd42f9c77b662b17f https://www.encodeproject.org/files/ENCFF971AWR/@@download/ENCFF971AWR.bigWig GRCh38 released s3://encode-public/2016/12/22/84d8af57-6036-4c05-b1c4-d70dbc352190/ENCFF971AWR.bigWig experiment not submitted to GEO ENCFF891RRQ fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF924KBV 2283012648 Michael Snyder, Stanford cff1f490abb99540bc15c0ba8f87cf79 https://www.encodeproject.org/files/ENCFF891RRQ/@@download/ENCFF891RRQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/a93bc50b-2b79-4515-af52-d5757c69f36d/ENCFF891RRQ.fastq.gz experiment not submitted to GEO ENCFF556GHO fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF260WLD 2280824550 Michael Snyder, Stanford 82be895523eab94834358ffcf0ef390f https://www.encodeproject.org/files/ENCFF556GHO/@@download/ENCFF556GHO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/b3e4cfae-b98e-4881-b121-6e49321f288c/ENCFF556GHO.fastq.gz experiment not submitted to GEO ENCFF924KBV fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF891RRQ 2263310537 Michael Snyder, Stanford eadf51b4831439e8a440ff473846d4d6 https://www.encodeproject.org/files/ENCFF924KBV/@@download/ENCFF924KBV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/8ac51d4b-b4bc-4a40-a8bf-f3f8a41659e8/ENCFF924KBV.fastq.gz experiment not submitted to GEO ENCFF260WLD fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF556GHO 2188029798 Michael Snyder, Stanford a7ed3403414ef0689af4f13b62bee39f https://www.encodeproject.org/files/ENCFF260WLD/@@download/ENCFF260WLD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/8a583cc7-7689-48c5-a341-219bc1da6824/ENCFF260WLD.fastq.gz experiment not submitted to GEO ENCFF478ARL bam alignments ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF260WLD, ENCFF556GHO, ENCFF891RRQ, ENCFF924KBV 6743440316 Anshul Kundaje, Stanford decab633621b3a7e0c858db007700752 https://www.encodeproject.org/files/ENCFF478ARL/@@download/ENCFF478ARL.bam GRCh38 released s3://encode-public/2016/12/22/d2d409ab-8867-4b40-a0b6-f573626a9d12/ENCFF478ARL.bam experiment not submitted to GEO ENCFF175EDN bigWig fold change over control ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF478ARL 997139775 Anshul Kundaje, Stanford a077e7231deabfcdf71855d117ab5ec3 https://www.encodeproject.org/files/ENCFF175EDN/@@download/ENCFF175EDN.bigWig GRCh38 released s3://encode-public/2016/12/22/7f9bb391-c035-4d43-bb58-776bcd06e66a/ENCFF175EDN.bigWig experiment not submitted to GEO ENCFF629BFT bigWig signal p-value ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF478ARL 961745421 Anshul Kundaje, Stanford 08b5b39c0eba9a6b6a193916bc96f8a5 https://www.encodeproject.org/files/ENCFF629BFT/@@download/ENCFF629BFT.bigWig GRCh38 released s3://encode-public/2016/12/22/995f9a05-a6d8-4917-a299-e5dd926a141d/ENCFF629BFT.bigWig experiment not submitted to GEO ENCFF954UEC fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF792EKC 2832373084 Michael Snyder, Stanford 4191f8c24aa9b63e562dd0604ce44014 https://www.encodeproject.org/files/ENCFF954UEC/@@download/ENCFF954UEC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/947ffd23-c7d0-43a7-9611-1592aadfbf27/ENCFF954UEC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF361CBZ fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF498RTW 2172640860 Michael Snyder, Stanford 0cc4240277eabc56d5aa58d01ee68e01 https://www.encodeproject.org/files/ENCFF361CBZ/@@download/ENCFF361CBZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6cc4658d-0f2d-465c-b5bb-54b623dc333b/ENCFF361CBZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF016WGG fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF682VWZ 2104959475 Michael Snyder, Stanford 6b736ac3e2025875d76547de2b5a0727 https://www.encodeproject.org/files/ENCFF016WGG/@@download/ENCFF016WGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ecfbbf87-a212-47a8-9436-2014c6bf7495/ENCFF016WGG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF792EKC fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF954UEC 3117583656 Michael Snyder, Stanford 99a2203932804df8976498c7aec6e9bc https://www.encodeproject.org/files/ENCFF792EKC/@@download/ENCFF792EKC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f6a27e0a-6413-45ae-9c55-5278f8d86a03/ENCFF792EKC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF728RJV fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF218HFA 2019616407 Michael Snyder, Stanford 1007d1357c16bc8db86028c61137a1dc https://www.encodeproject.org/files/ENCFF728RJV/@@download/ENCFF728RJV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c01ae41c-be11-4333-8210-fced4db5351d/ENCFF728RJV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF829SBE fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF154KNN 2136544377 Michael Snyder, Stanford aa55e829152fe2e8d58032fbc1e808f8 https://www.encodeproject.org/files/ENCFF829SBE/@@download/ENCFF829SBE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f0f5d58a-792c-4476-a395-0119bbeb0092/ENCFF829SBE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF294HDC fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF354TGE 230300038 Michael Snyder, Stanford 63583f8ea9c925b14f6d1d77784e5d68 https://www.encodeproject.org/files/ENCFF294HDC/@@download/ENCFF294HDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5ca76857-7aa6-4f67-b67a-90ff7f5ffeae/ENCFF294HDC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF709FLO fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF396BSZ 1855077411 Michael Snyder, Stanford 1ede47572f3090cf3f13c18e4b7c8a74 https://www.encodeproject.org/files/ENCFF709FLO/@@download/ENCFF709FLO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/44b79f2b-36a6-4bb2-ac3b-2b8a16368767/ENCFF709FLO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF803XRX fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF351LRE 1286941603 Michael Snyder, Stanford 3df8389dd7bad05f677425a3ae123798 https://www.encodeproject.org/files/ENCFF803XRX/@@download/ENCFF803XRX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e335734d-f1d6-454c-8e53-7dd4a2c5da31/ENCFF803XRX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF218HFA fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF728RJV 2112213578 Michael Snyder, Stanford 00d4a47baf908d4e356da87588430a47 https://www.encodeproject.org/files/ENCFF218HFA/@@download/ENCFF218HFA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bfea1a3f-c81d-4171-aed7-c1151d507afc/ENCFF218HFA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF498RTW fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF361CBZ 2230917787 Michael Snyder, Stanford fa444b86962d84797e76f8679d124c1a https://www.encodeproject.org/files/ENCFF498RTW/@@download/ENCFF498RTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c8fd7349-a9cd-486c-bfe1-9ebb1e6f44ad/ENCFF498RTW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF354TGE fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF294HDC 234268173 Michael Snyder, Stanford d22913fe5d3affb47ed6764f77359616 https://www.encodeproject.org/files/ENCFF354TGE/@@download/ENCFF354TGE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/273fe029-6519-4b75-a7f4-81e2c41fbad6/ENCFF354TGE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF396BSZ fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF709FLO 2023896966 Michael Snyder, Stanford 190023e67caaf8be043060d7c17eab20 https://www.encodeproject.org/files/ENCFF396BSZ/@@download/ENCFF396BSZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e71f0a26-5b2e-43cc-836d-e13cf5503c2a/ENCFF396BSZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF154KNN fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF829SBE 1946153442 Michael Snyder, Stanford 77932de19789ab32198091f7d42afadf https://www.encodeproject.org/files/ENCFF154KNN/@@download/ENCFF154KNN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2eb0e255-9675-4f69-a854-7af42ac0aa2a/ENCFF154KNN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF565CVN fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF092IJN 1230191596 Michael Snyder, Stanford d456c6fd9df6254a87b799599d2467f3 https://www.encodeproject.org/files/ENCFF565CVN/@@download/ENCFF565CVN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9e4fbbf9-8731-4ac4-ae54-82fb8109d3b5/ENCFF565CVN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF247VZG fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF738DHW 1616989437 Michael Snyder, Stanford 556b984284cf0f72b47acfc302447722 https://www.encodeproject.org/files/ENCFF247VZG/@@download/ENCFF247VZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5a789617-037b-4795-8c33-bac2725606e7/ENCFF247VZG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF351LRE fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF803XRX 1168324587 Michael Snyder, Stanford 2f44472b8e5d137bba13f6ff541cad10 https://www.encodeproject.org/files/ENCFF351LRE/@@download/ENCFF351LRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c406d511-b372-4f9a-8127-d8f1a61ada41/ENCFF351LRE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF738DHW fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF247VZG 1677755186 Michael Snyder, Stanford a14f9b92042ecbe948f502a9ab3ba68f https://www.encodeproject.org/files/ENCFF738DHW/@@download/ENCFF738DHW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9ea7843f-3fc7-48f4-af9e-da3170354bca/ENCFF738DHW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF682VWZ fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF016WGG 2291833909 Michael Snyder, Stanford 83efd8e14069f555072ff1cd865b70b4 https://www.encodeproject.org/files/ENCFF682VWZ/@@download/ENCFF682VWZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ebe0c73f-fa1b-4b4f-9e4a-b7fac91b7e29/ENCFF682VWZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF092IJN fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF565CVN 1291683882 Michael Snyder, Stanford 2f6d00caaa6392718cb749aa38403357 https://www.encodeproject.org/files/ENCFF092IJN/@@download/ENCFF092IJN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/58758e9f-0e59-409a-9016-dcc318294a48/ENCFF092IJN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF205KDV bam alignments ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 ENCFF092IJN, ENCFF154KNN, ENCFF247VZG, ENCFF351LRE, ENCFF396BSZ, ENCFF565CVN, ENCFF709FLO, ENCFF738DHW, ENCFF803XRX, ENCFF829SBE 7231284840 Anshul Kundaje, Stanford 215e214faa8ac78b554bf2a1028c80b3 https://www.encodeproject.org/files/ENCFF205KDV/@@download/ENCFF205KDV.bam GRCh38 released s3://encode-public/2017/04/01/2dffe399-643d-4341-8535-d65b7f9f8f6e/ENCFF205KDV.bam mismatched file status, experiment not submitted to GEO ENCFF479UTZ bam alignments ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 ENCFF016WGG, ENCFF218HFA, ENCFF294HDC, ENCFF354TGE, ENCFF361CBZ, ENCFF498RTW, ENCFF682VWZ, ENCFF728RJV, ENCFF792EKC, ENCFF954UEC 5956231238 Anshul Kundaje, Stanford e25db3067421be770ae3e7ee7bcfbff0 https://www.encodeproject.org/files/ENCFF479UTZ/@@download/ENCFF479UTZ.bam GRCh38 released s3://encode-public/2017/04/01/902de167-8c17-4b49-8d69-33863a52c5b2/ENCFF479UTZ.bam mismatched file status, experiment not submitted to GEO ENCFF703OJH fastq reads ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF272XCV 3652832702 Michael Snyder, Stanford a0139a9981fd1db0fcb19b2a91a54412 https://www.encodeproject.org/files/ENCFF703OJH/@@download/ENCFF703OJH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/ffc29e51-7ead-43c2-b517-c10bf570a08f/ENCFF703OJH.fastq.gz experiment not submitted to GEO ENCFF272XCV fastq reads ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF703OJH 3946547782 Michael Snyder, Stanford c37361781b964aefd6fe60bcfab31afb https://www.encodeproject.org/files/ENCFF272XCV/@@download/ENCFF272XCV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/04ed439d-b1e4-445e-8f6c-6a85177f032b/ENCFF272XCV.fastq.gz experiment not submitted to GEO ENCFF214JBF bigWig signal p-value ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF780JBA 1178268091 Anshul Kundaje, Stanford 861e9a45c563d5e7a3bdb4a116352c25 https://www.encodeproject.org/files/ENCFF214JBF/@@download/ENCFF214JBF.bigWig GRCh38 released s3://encode-public/2016/12/22/962c948a-b1ce-4be0-89d9-f10d47fc6f6e/ENCFF214JBF.bigWig experiment not submitted to GEO ENCFF780JBA bam alignments ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF272XCV, ENCFF703OJH 5174733758 Anshul Kundaje, Stanford ff95efef5fa1a63afb33a3b0d26bbe4d https://www.encodeproject.org/files/ENCFF780JBA/@@download/ENCFF780JBA.bam GRCh38 released s3://encode-public/2016/12/22/b4963faa-6fde-4ba9-be41-e27c4938ec0a/ENCFF780JBA.bam experiment not submitted to GEO ENCFF181UOS bigWig fold change over control ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF780JBA 1283961229 Anshul Kundaje, Stanford 244925712718c818a2ed987cf5df1dbf https://www.encodeproject.org/files/ENCFF181UOS/@@download/ENCFF181UOS.bigWig GRCh38 released s3://encode-public/2016/12/22/bb1a6a49-24a9-4694-96ed-c6bd4220ae7e/ENCFF181UOS.bigWig experiment not submitted to GEO ENCFF112OMC fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF571XQU 502156511 Michael Snyder, Stanford 1095558a4a6923e6c43213d3598c043e https://www.encodeproject.org/files/ENCFF112OMC/@@download/ENCFF112OMC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/cb100467-afae-40ce-8651-c03e4595550a/ENCFF112OMC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF119DQL fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF534QUD 2833832001 Michael Snyder, Stanford d47c40487a4261a5ef07a6584d470a25 https://www.encodeproject.org/files/ENCFF119DQL/@@download/ENCFF119DQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/044cf122-8bfc-4b11-b3a1-187285ee9f9e/ENCFF119DQL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF712JSX fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF762PDO 1481284571 Michael Snyder, Stanford 5d03afac4abeac17b64e36795a5d81a9 https://www.encodeproject.org/files/ENCFF712JSX/@@download/ENCFF712JSX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8e03b06c-7bbd-4edc-bb9f-efe14684cf75/ENCFF712JSX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF210INV fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF885ZCL 814671281 Michael Snyder, Stanford 3fa92d8a93c069e554d8e177c4f596c9 https://www.encodeproject.org/files/ENCFF210INV/@@download/ENCFF210INV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3e153c88-5b92-4679-8502-1520c3211888/ENCFF210INV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF999VMV fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF911BFY 1354431095 Michael Snyder, Stanford 2f3900a9588a0975d8904751d50806dd https://www.encodeproject.org/files/ENCFF999VMV/@@download/ENCFF999VMV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c2f1a440-9ed9-45a6-979c-294ba56e9c26/ENCFF999VMV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF870CBM fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF465NVI 1583861903 Michael Snyder, Stanford a31285db3ba6380f489c370b3ca0c5af https://www.encodeproject.org/files/ENCFF870CBM/@@download/ENCFF870CBM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1e155936-0d9f-4fc0-b85b-f7c9b58cd625/ENCFF870CBM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF465NVI fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF870CBM 1753920668 Michael Snyder, Stanford c4b1e0753d8251c57f780b69733c8387 https://www.encodeproject.org/files/ENCFF465NVI/@@download/ENCFF465NVI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/83ffebb4-19b9-4291-89c3-b9cd4e0419a8/ENCFF465NVI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF911BFY fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF999VMV 1380221057 Michael Snyder, Stanford da0dd9b33888c0ca56a8802469241275 https://www.encodeproject.org/files/ENCFF911BFY/@@download/ENCFF911BFY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/29c51599-7284-415e-a59d-794ea12bcb1d/ENCFF911BFY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF571XQU fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF112OMC 462736555 Michael Snyder, Stanford 3e0cb803e9c9f2e3c1d964062ddbbdf7 https://www.encodeproject.org/files/ENCFF571XQU/@@download/ENCFF571XQU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/601347a9-1ee2-4608-b77f-f498accb11ea/ENCFF571XQU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF762PDO fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF712JSX 1399221520 Michael Snyder, Stanford b932a2386437ffb8dbdc75e360a8c06c https://www.encodeproject.org/files/ENCFF762PDO/@@download/ENCFF762PDO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e9b54198-b90d-49da-9376-db176d359290/ENCFF762PDO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF146NGQ fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF003LNW 2402279390 Michael Snyder, Stanford 4e94eb3acdaf7e063eb92a5bf449c912 https://www.encodeproject.org/files/ENCFF146NGQ/@@download/ENCFF146NGQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/988f6509-881a-46e7-815c-9e08e071ec60/ENCFF146NGQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF885ZCL fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF210INV 904831182 Michael Snyder, Stanford cb00913a1ecafb6fb41346041fd3024e https://www.encodeproject.org/files/ENCFF885ZCL/@@download/ENCFF885ZCL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/cd143d33-80fc-497f-979f-101c004649d9/ENCFF885ZCL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF003LNW fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF146NGQ 2328542015 Michael Snyder, Stanford 17ba692d403f7874cdd2e51a4b8bb7db https://www.encodeproject.org/files/ENCFF003LNW/@@download/ENCFF003LNW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/fa6b0ec8-8498-45ed-a61a-d8707b2d2a2b/ENCFF003LNW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF909AYB fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF312PBC 1290985697 Michael Snyder, Stanford 945690cad14c3831e45da69aaf60d835 https://www.encodeproject.org/files/ENCFF909AYB/@@download/ENCFF909AYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0f9c1017-85d2-47d0-9334-463f6d4c3e48/ENCFF909AYB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF153VMV fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF798VAO 1105250769 Michael Snyder, Stanford eb2e8828f0d4894a172ffd319ef968db https://www.encodeproject.org/files/ENCFF153VMV/@@download/ENCFF153VMV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b544eb80-4ed6-4eac-a4e2-f4c2134f900f/ENCFF153VMV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF798VAO fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF153VMV 1169290377 Michael Snyder, Stanford d8f50ea9781877e1faef5817136a44be https://www.encodeproject.org/files/ENCFF798VAO/@@download/ENCFF798VAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/11bc9028-56d3-4e0a-961e-d54620866d7a/ENCFF798VAO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF534QUD fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF119DQL 2582517068 Michael Snyder, Stanford 4a76f28b3cd6c265d2bd10c074844ce9 https://www.encodeproject.org/files/ENCFF534QUD/@@download/ENCFF534QUD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7b78d632-f853-4f04-b3ab-d4e8dfe65576/ENCFF534QUD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF312PBC fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF909AYB 1222541807 Michael Snyder, Stanford 2fa930189276e89fdc02f1fc2783a6e4 https://www.encodeproject.org/files/ENCFF312PBC/@@download/ENCFF312PBC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5773e101-778d-4018-ae3d-f71d2d00568e/ENCFF312PBC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF784DSJ bam alignments ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 ENCFF112OMC, ENCFF119DQL, ENCFF534QUD, ENCFF571XQU, ENCFF712JSX, ENCFF762PDO, ENCFF911BFY, ENCFF999VMV 5408239897 Anshul Kundaje, Stanford c7684d330e854738dcd395f83da5260b https://www.encodeproject.org/files/ENCFF784DSJ/@@download/ENCFF784DSJ.bam GRCh38 released s3://encode-public/2017/04/01/154bd03b-69cd-47ff-9fc3-232fb4076f6b/ENCFF784DSJ.bam mismatched file status, experiment not submitted to GEO ENCFF592ALR bam alignments ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 ENCFF003LNW, ENCFF146NGQ, ENCFF153VMV, ENCFF210INV, ENCFF312PBC, ENCFF465NVI, ENCFF798VAO, ENCFF870CBM, ENCFF885ZCL, ENCFF909AYB 7184536428 Anshul Kundaje, Stanford 74eb061fbb4052f5c0b05a628c03e272 https://www.encodeproject.org/files/ENCFF592ALR/@@download/ENCFF592ALR.bam GRCh38 released s3://encode-public/2017/04/01/acc615ee-13d2-4d7c-8418-89b991df739e/ENCFF592ALR.bam mismatched file status, experiment not submitted to GEO ENCFF993MCA fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF010KDO 1595104451 Michael Snyder, Stanford a197d7a91f0c368c16952aa5dc656bc2 https://www.encodeproject.org/files/ENCFF993MCA/@@download/ENCFF993MCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/425bf8ce-a81c-4193-909e-3d23a42029ce/ENCFF993MCA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF010KDO fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF993MCA 1480949727 Michael Snyder, Stanford a29f9a4620a83fab3be46c03806dd3d0 https://www.encodeproject.org/files/ENCFF010KDO/@@download/ENCFF010KDO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ab6d0a6d-c74d-408d-a5e2-aefc3aba0df9/ENCFF010KDO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF931NXT fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF797YCO 2323576275 Michael Snyder, Stanford df502634262f7d1116ff373a74e64369 https://www.encodeproject.org/files/ENCFF931NXT/@@download/ENCFF931NXT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b82975a1-219f-4269-898b-1900e8a1ee03/ENCFF931NXT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF071PMP fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF487SKL 370950411 Michael Snyder, Stanford edaaa7e306cf9341c75b05d17e67ab09 https://www.encodeproject.org/files/ENCFF071PMP/@@download/ENCFF071PMP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/694460a4-2a95-45ac-bd71-26de0d9aabe8/ENCFF071PMP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF460PKS fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF054RBW 1733538701 Michael Snyder, Stanford 74a89253457757c6373209a690226421 https://www.encodeproject.org/files/ENCFF460PKS/@@download/ENCFF460PKS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a552acef-7bd4-4afe-a340-c11138bff3a7/ENCFF460PKS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF935RPJ fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF292XLV 2326423266 Michael Snyder, Stanford 58bb02bb81086e9d81ea74bd63232628 https://www.encodeproject.org/files/ENCFF935RPJ/@@download/ENCFF935RPJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/74b7656d-74bb-4c50-a65a-53001acaefdf/ENCFF935RPJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF292XLV fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF935RPJ 2575024492 Michael Snyder, Stanford da810fe21f936aff0fcf7546abdbb60f https://www.encodeproject.org/files/ENCFF292XLV/@@download/ENCFF292XLV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8eab3a4f-74ce-4aea-8ffb-018a4f984b7d/ENCFF292XLV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF804VOY fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF728OAW 566349199 Michael Snyder, Stanford fad6c4b688ed059a2a2141eb7c45f4be https://www.encodeproject.org/files/ENCFF804VOY/@@download/ENCFF804VOY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3dc7dcac-fb68-491e-8cf3-25cab6cc514b/ENCFF804VOY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF487SKL fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF071PMP 403641208 Michael Snyder, Stanford 66d3d258b694fed0e20f6276c7577f6c https://www.encodeproject.org/files/ENCFF487SKL/@@download/ENCFF487SKL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8b004851-9199-4ba2-9c5e-c7bac90b1cfb/ENCFF487SKL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF054RBW fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF460PKS 1787949363 Michael Snyder, Stanford 2c24312de6bbc8b13fb279cc429ed437 https://www.encodeproject.org/files/ENCFF054RBW/@@download/ENCFF054RBW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e3de381a-cbc1-4525-bf3b-da5f00694cfd/ENCFF054RBW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF728OAW fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF804VOY 518294811 Michael Snyder, Stanford 01c37ca2d1f06c2ddf32f47015b96460 https://www.encodeproject.org/files/ENCFF728OAW/@@download/ENCFF728OAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/cbfbd363-568e-40a8-a869-7dbee9945a16/ENCFF728OAW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF797YCO fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF931NXT 2179812542 Michael Snyder, Stanford 6990fd113a379078e7f7a0ade1ca9ccf https://www.encodeproject.org/files/ENCFF797YCO/@@download/ENCFF797YCO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3309b777-275b-4e66-952c-2342efae2ddf/ENCFF797YCO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF985VCR fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 1 ENCFF386WNU 855624795 Michael Snyder, Stanford dc0c8b9058a50693af1de25ac568d0fe https://www.encodeproject.org/files/ENCFF985VCR/@@download/ENCFF985VCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f1f6ae5c-b212-48cd-8da5-cb4ae018e342/ENCFF985VCR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF386WNU fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 2 ENCFF985VCR 902104235 Michael Snyder, Stanford 7d302f259fc042f191df8fe88e32f312 https://www.encodeproject.org/files/ENCFF386WNU/@@download/ENCFF386WNU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b1940762-49d7-45b8-8d9f-ca30875f370b/ENCFF386WNU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF431IEL fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF100VJF 3617118200 Michael Snyder, Stanford 0d096d42fb50a21a4debab3f00114234 https://www.encodeproject.org/files/ENCFF431IEL/@@download/ENCFF431IEL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9226de17-0cd3-4d19-9d15-e921e1030ce1/ENCFF431IEL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF100VJF fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF431IEL 3452243267 Michael Snyder, Stanford 4f8234d1aebf49ccd40cc28469857ed7 https://www.encodeproject.org/files/ENCFF100VJF/@@download/ENCFF100VJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/51cbb97b-24a3-4f17-a8c8-e76021dfd181/ENCFF100VJF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF531KZI fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF735LIR 1748427932 Michael Snyder, Stanford 8cc38259e67c5e72a765bf6e9d7ee33e https://www.encodeproject.org/files/ENCFF531KZI/@@download/ENCFF531KZI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/14b61ec6-6e18-4aa8-a697-2de7a853522c/ENCFF531KZI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF388LWT fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF410KQY 1100464059 Michael Snyder, Stanford 1845bef50fc1c1bb0c6b92c188f3d017 https://www.encodeproject.org/files/ENCFF388LWT/@@download/ENCFF388LWT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d9f43ffc-b511-4ffc-a6eb-d0b92e107ea4/ENCFF388LWT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF735LIR fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF531KZI 1907657703 Michael Snyder, Stanford abf150cc53f3bd720f56139a3331bf0f https://www.encodeproject.org/files/ENCFF735LIR/@@download/ENCFF735LIR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7b1b92db-b3be-4c8a-ab25-81bc64cebb99/ENCFF735LIR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF410KQY fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF388LWT 1050737882 Michael Snyder, Stanford 981869ca228732cf967609a06493a747 https://www.encodeproject.org/files/ENCFF410KQY/@@download/ENCFF410KQY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9188f850-c6aa-4d70-88ad-b82f4721f80c/ENCFF410KQY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF167WAP fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF213QMW 790748377 Michael Snyder, Stanford 441fb5e5eb93484fc24ffe2ef3280e87 https://www.encodeproject.org/files/ENCFF167WAP/@@download/ENCFF167WAP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/045b599e-1516-4a77-a759-31775d62981b/ENCFF167WAP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF213QMW fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF167WAP 836708485 Michael Snyder, Stanford d7c8e30726152c417d5a5081e0410b4c https://www.encodeproject.org/files/ENCFF213QMW/@@download/ENCFF213QMW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7462fa5f-6c92-4ad0-83e4-4b33bdd39de9/ENCFF213QMW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF049DWX bam alignments ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 ENCFF100VJF, ENCFF167WAP, ENCFF213QMW, ENCFF292XLV, ENCFF388LWT, ENCFF410KQY, ENCFF431IEL, ENCFF531KZI, ENCFF735LIR, ENCFF935RPJ 7439056409 Anshul Kundaje, Stanford 61fad82e8f4d4db7bb1dbe1673444fb8 https://www.encodeproject.org/files/ENCFF049DWX/@@download/ENCFF049DWX.bam GRCh38 released s3://encode-public/2017/04/01/309d2453-095a-4f12-824d-c6dd7d1c064d/ENCFF049DWX.bam mismatched file status, experiment not submitted to GEO ENCFF429JLL bam alignments ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 ENCFF010KDO, ENCFF054RBW, ENCFF071PMP, ENCFF386WNU, ENCFF460PKS, ENCFF487SKL, ENCFF728OAW, ENCFF797YCO, ENCFF804VOY, ENCFF931NXT, ENCFF985VCR, ENCFF993MCA 5846349534 Anshul Kundaje, Stanford 2ec3ea46e77c547aa29cb78bc9c2dce7 https://www.encodeproject.org/files/ENCFF429JLL/@@download/ENCFF429JLL.bam GRCh38 released s3://encode-public/2017/04/01/06a5b0be-0ae5-44f9-b744-58f4544b4f20/ENCFF429JLL.bam mismatched file status, experiment not submitted to GEO ENCFF341MYG fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF248EJF 3501113327 Will Greenleaf, Stanford ffe98eb6998d9ddda373c349f6cc6729 https://www.encodeproject.org/files/ENCFF341MYG/@@download/ENCFF341MYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/012e0e5f-7b03-470b-bd30-2a348495b7cd/ENCFF341MYG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF248EJF fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF341MYG 3593718973 Will Greenleaf, Stanford 57c4855bdca63ca181bfbe99b8be4f02 https://www.encodeproject.org/files/ENCFF248EJF/@@download/ENCFF248EJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/958ae920-0104-42e5-989a-deecb024b9e7/ENCFF248EJF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF368TYI fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF106QGY 3164429011 Michael Snyder, Stanford c321c8d03fb08b12672498cfc0b98802 https://www.encodeproject.org/files/ENCFF368TYI/@@download/ENCFF368TYI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d0c9e797-6f17-41c9-b624-681265608f2a/ENCFF368TYI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF193RRC fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF886FSC 1611532931 Michael Snyder, Stanford fa14dde9735705fed98a81d0c6678a5e https://www.encodeproject.org/files/ENCFF193RRC/@@download/ENCFF193RRC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5d762681-1c32-41e7-96e6-40e5bb8a35aa/ENCFF193RRC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF734PEQ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF927LSG 970302879 Michael Snyder, Stanford 21739a4b7c8885a79a91cb9b915c74ba https://www.encodeproject.org/files/ENCFF734PEQ/@@download/ENCFF734PEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5c995252-029b-4cc4-9ccf-7c24cb5f57de/ENCFF734PEQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF573UXK fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF366DFI 1804751579 Michael Snyder, Stanford a1eedc5fd80f38a7105888f9ba1a16f3 https://www.encodeproject.org/files/ENCFF573UXK/@@download/ENCFF573UXK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/22d573a3-4e9f-4c5f-8ac9-8bb8136e97fe/ENCFF573UXK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF106QGY fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF368TYI 2899441457 Michael Snyder, Stanford 152ada3f35103d85e83850f59589f11c https://www.encodeproject.org/files/ENCFF106QGY/@@download/ENCFF106QGY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2b4521c2-e02d-4fe8-bf7d-c7f677885549/ENCFF106QGY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF859BDM fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF007USV 1924924647 Michael Snyder, Stanford 3f16fec0a21fe1f1eb89c0aa25a4b59e https://www.encodeproject.org/files/ENCFF859BDM/@@download/ENCFF859BDM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/02f91e73-39fa-47b2-ab37-9f2743a3531d/ENCFF859BDM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF007USV fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF859BDM 1986291766 Michael Snyder, Stanford eef5de58c73001d12133b3820c3fa22d https://www.encodeproject.org/files/ENCFF007USV/@@download/ENCFF007USV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1a6578e9-df78-4643-922a-9d4447cd3bd0/ENCFF007USV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF886FSC fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF193RRC 1766722922 Michael Snyder, Stanford 4fcd83171ff48133e4e04c57c3e61e9c https://www.encodeproject.org/files/ENCFF886FSC/@@download/ENCFF886FSC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/dd830b91-ddbd-448a-986b-3b2ee2d1b171/ENCFF886FSC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF366DFI fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF573UXK 1726278899 Michael Snyder, Stanford 1350bd904b0c31ce06eb76d7e01287b9 https://www.encodeproject.org/files/ENCFF366DFI/@@download/ENCFF366DFI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/01b59897-2c97-4f9b-8dbe-53335dafe3f4/ENCFF366DFI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF751XTV fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF590SYZ 957278098 Michael Snyder, Stanford 9aba84ad81981f0a347332d685873469 https://www.encodeproject.org/files/ENCFF751XTV/@@download/ENCFF751XTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8f539cce-f9a5-4bef-a918-ea35330b549b/ENCFF751XTV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF590SYZ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF751XTV 1059572957 Michael Snyder, Stanford ec87b23626ec65fb499c11f9edf29396 https://www.encodeproject.org/files/ENCFF590SYZ/@@download/ENCFF590SYZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c83495ac-7405-455f-9c08-952660a64091/ENCFF590SYZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927LSG fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF734PEQ 883471477 Michael Snyder, Stanford 235fa4af5558e8083e7f971378b42432 https://www.encodeproject.org/files/ENCFF927LSG/@@download/ENCFF927LSG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d8fe263c-ffb5-4af9-ae32-8792791b3707/ENCFF927LSG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF641SFZ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF031ARQ 665922538 Michael Snyder, Stanford 991b274b4dfa91413e4bd3fead368c66 https://www.encodeproject.org/files/ENCFF641SFZ/@@download/ENCFF641SFZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/92e9bb3b-bc49-43f4-81d9-f51fbc5bb8d5/ENCFF641SFZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF031ARQ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF641SFZ 699048325 Michael Snyder, Stanford e242ec737b8303896a799209c9b26915 https://www.encodeproject.org/files/ENCFF031ARQ/@@download/ENCFF031ARQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c924cd45-7eb1-46dd-8680-8a8955470a10/ENCFF031ARQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF111ULL bam alignments ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 ENCFF007USV, ENCFF031ARQ, ENCFF193RRC, ENCFF366DFI, ENCFF573UXK, ENCFF590SYZ, ENCFF641SFZ, ENCFF734PEQ, ENCFF751XTV, ENCFF859BDM, ENCFF886FSC, ENCFF927LSG 8570702736 Anshul Kundaje, Stanford 976019fd12858da7effcf54c6e214f95 https://www.encodeproject.org/files/ENCFF111ULL/@@download/ENCFF111ULL.bam GRCh38 released s3://encode-public/2017/04/01/ebbdc35b-c4fe-4144-b065-5907b4d5ccef/ENCFF111ULL.bam mismatched file status, experiment not submitted to GEO ENCFF654ZNI bam alignments ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 ENCFF106QGY, ENCFF248EJF, ENCFF341MYG, ENCFF368TYI 6616747220 Anshul Kundaje, Stanford e5c93c60ef7853ba301ff20bdcfc2374 https://www.encodeproject.org/files/ENCFF654ZNI/@@download/ENCFF654ZNI.bam GRCh38 released s3://encode-public/2017/04/01/42efc584-da9a-492a-a17f-83b62f1ac58b/ENCFF654ZNI.bam mismatched file status, experiment not submitted to GEO ENCFF035UUL fastq reads ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF259ZLS 3466088953 Michael Snyder, Stanford 01bf3ab53812f1fa592e1987d462b5ca https://www.encodeproject.org/files/ENCFF035UUL/@@download/ENCFF035UUL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/5bdbddb5-a2ca-4299-8244-6e8a8640aa4b/ENCFF035UUL.fastq.gz experiment not submitted to GEO ENCFF259ZLS fastq reads ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF035UUL 3769352283 Michael Snyder, Stanford ce0615d3d6c69de9860ba7a18a4e9152 https://www.encodeproject.org/files/ENCFF259ZLS/@@download/ENCFF259ZLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/19365bf5-48e5-4753-99bb-cdd8eb19e365/ENCFF259ZLS.fastq.gz experiment not submitted to GEO ENCFF628MCV bam alignments ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF035UUL, ENCFF259ZLS 4331521409 Anshul Kundaje, Stanford 2e02e1c2413d0e8c0b607cb3cbd914c8 https://www.encodeproject.org/files/ENCFF628MCV/@@download/ENCFF628MCV.bam GRCh38 released s3://encode-public/2016/12/22/901dfb90-721d-453b-ae39-0bb798646632/ENCFF628MCV.bam experiment not submitted to GEO ENCFF490ZBQ bigWig signal p-value ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF628MCV 894731243 Anshul Kundaje, Stanford a13915bb16175ab3cac191c92ac2af25 https://www.encodeproject.org/files/ENCFF490ZBQ/@@download/ENCFF490ZBQ.bigWig GRCh38 released s3://encode-public/2016/12/22/fbb8f471-1d42-4a75-b0be-dc4b7c4d515f/ENCFF490ZBQ.bigWig experiment not submitted to GEO ENCFF025ING bigWig fold change over control ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF628MCV 1077790909 Anshul Kundaje, Stanford be96adae64694996e0c4f18e8f1b203b https://www.encodeproject.org/files/ENCFF025ING/@@download/ENCFF025ING.bigWig GRCh38 released s3://encode-public/2016/12/22/523b74ca-e796-4276-b91f-6571ee880676/ENCFF025ING.bigWig experiment not submitted to GEO ENCFF520IRQ fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF907KNE 1313451188 Michael Snyder, Stanford a231f409e3aefbc84cf1a9a32cec2812 https://www.encodeproject.org/files/ENCFF520IRQ/@@download/ENCFF520IRQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/00f27515-028d-4e16-9bc7-e77ceb02e84b/ENCFF520IRQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF546WBL fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF858GTH 1572855184 Michael Snyder, Stanford f4de9d523edfd61efdeaa4215f41526c https://www.encodeproject.org/files/ENCFF546WBL/@@download/ENCFF546WBL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b47bd533-5322-4666-8532-1ca245d543cf/ENCFF546WBL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF747LPX fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF334TQS 2485311072 Michael Snyder, Stanford c0d62d7c38291d3d8ae37d8a680253ac https://www.encodeproject.org/files/ENCFF747LPX/@@download/ENCFF747LPX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2a42da53-a763-4abc-89f8-21239ad91d75/ENCFF747LPX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF581SDL fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF157FMZ 782842586 Michael Snyder, Stanford 0c6e91b9d8c9eb7035ed21fdc449ad61 https://www.encodeproject.org/files/ENCFF581SDL/@@download/ENCFF581SDL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/202e95a5-a93a-4a8b-a450-6aeca17de827/ENCFF581SDL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF642LCD fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF132WCZ 1568212883 Michael Snyder, Stanford ddc8c8066ee39f6e3b1858966762eb26 https://www.encodeproject.org/files/ENCFF642LCD/@@download/ENCFF642LCD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5be9a49f-ed48-44fa-98d6-76c07f4d0d43/ENCFF642LCD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF334TQS fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF747LPX 2720442246 Michael Snyder, Stanford 1b50314056b8b14c39f457dc82791a14 https://www.encodeproject.org/files/ENCFF334TQS/@@download/ENCFF334TQS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1cb193c6-db29-43d9-94f7-f2a388f888a3/ENCFF334TQS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF336ZDA fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF680VLN 1375532753 Michael Snyder, Stanford d154ca03901f24b117189efb13d7f2ba https://www.encodeproject.org/files/ENCFF336ZDA/@@download/ENCFF336ZDA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e20fc23b-3219-482e-95b9-a4d3e903fc4a/ENCFF336ZDA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927RRE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF534OEW 951896293 Michael Snyder, Stanford 8bda0a7f42caeb2da67e90cc3397b044 https://www.encodeproject.org/files/ENCFF927RRE/@@download/ENCFF927RRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/47d6621b-0fe6-4268-b00c-9fcbf7491c54/ENCFF927RRE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF751BYE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF665ASH 969283207 Michael Snyder, Stanford 11278dc2250ffa0a6fdc60776c6f2706 https://www.encodeproject.org/files/ENCFF751BYE/@@download/ENCFF751BYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d2e5b462-444d-424a-89b6-84fe11fb50ec/ENCFF751BYE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF858GTH fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF546WBL 1714420880 Michael Snyder, Stanford 0085e759cd42406b708fed2a5b9dc125 https://www.encodeproject.org/files/ENCFF858GTH/@@download/ENCFF858GTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/41ec4f2e-3b98-4e8f-bb2d-5601f49ce2bb/ENCFF858GTH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF617ALL fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF688WUF 583337153 Michael Snyder, Stanford a7549dcc537d9e48d2c8230e888d0fd4 https://www.encodeproject.org/files/ENCFF617ALL/@@download/ENCFF617ALL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b3c3025a-0301-473d-975c-5c0bf7942a59/ENCFF617ALL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF680VLN fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF336ZDA 1242113580 Michael Snyder, Stanford 757db4fee70912e639d4fb39c7d5c73b https://www.encodeproject.org/files/ENCFF680VLN/@@download/ENCFF680VLN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b23a5e02-8d7d-4e32-8ba2-b8b129638683/ENCFF680VLN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF665ASH fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF751BYE 1025168632 Michael Snyder, Stanford a7bb1195c9892e89d9a77747eeb79863 https://www.encodeproject.org/files/ENCFF665ASH/@@download/ENCFF665ASH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/feab04f8-f3e1-404c-a5f6-c27092a43644/ENCFF665ASH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF907KNE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF520IRQ 1376212306 Michael Snyder, Stanford ff8cb70e14397b8a43d853087e6bda5a https://www.encodeproject.org/files/ENCFF907KNE/@@download/ENCFF907KNE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b633b8a2-95b1-4c07-881f-7393fc3e07bb/ENCFF907KNE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF985OET fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF193XZE 853069652 Michael Snyder, Stanford c44bd9c043da4a6ce34c681f76ed8320 https://www.encodeproject.org/files/ENCFF985OET/@@download/ENCFF985OET.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d9bbb1de-f887-4746-a663-019b0b978246/ENCFF985OET.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF232ZIV fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 7 76 paired-ended 2 ENCFF750HPU 1164420214 Michael Snyder, Stanford 729b17934ffe1e13a92a595b6312c1e9 https://www.encodeproject.org/files/ENCFF232ZIV/@@download/ENCFF232ZIV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/98132b43-cd03-4cdb-a69f-5b14bcfc6618/ENCFF232ZIV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF157FMZ fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF581SDL 824841337 Michael Snyder, Stanford d44a788bdcfc76084cda9e482110752f https://www.encodeproject.org/files/ENCFF157FMZ/@@download/ENCFF157FMZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/285b9b63-eb95-4c6a-bb8b-f8f7ccdca221/ENCFF157FMZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF132WCZ fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF642LCD 1706878511 Michael Snyder, Stanford a7f00803c7072b5cc8a56f66045c7a8e https://www.encodeproject.org/files/ENCFF132WCZ/@@download/ENCFF132WCZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d1113bd9-0139-4647-8279-3b1545c1304a/ENCFF132WCZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF534OEW fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF927RRE 999796419 Michael Snyder, Stanford 2c19dafc032ea51eb3a3d0f7fd6a2b6c https://www.encodeproject.org/files/ENCFF534OEW/@@download/ENCFF534OEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/43ccfb25-d2ce-41dd-a552-052824ba560b/ENCFF534OEW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF688WUF fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF617ALL 645282854 Michael Snyder, Stanford 724105fe5ae8aa83ba1a947609341c7b https://www.encodeproject.org/files/ENCFF688WUF/@@download/ENCFF688WUF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/85f31ad2-17b4-437d-9cd1-663f50a919e7/ENCFF688WUF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF750HPU fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 7 76 paired-ended 1 ENCFF232ZIV 1112365006 Michael Snyder, Stanford 598cb738a2a10a6b026956d6cfe723d8 https://www.encodeproject.org/files/ENCFF750HPU/@@download/ENCFF750HPU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/55e23c35-98eb-41b2-bd51-07227358eb8b/ENCFF750HPU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF193XZE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF985OET 940560714 Michael Snyder, Stanford 4fd709a81872a411f0c19e6339a8b2bb https://www.encodeproject.org/files/ENCFF193XZE/@@download/ENCFF193XZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/42da641d-17e4-4ff9-bab4-4408107c6eaa/ENCFF193XZE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF787DUW bam alignments ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 ENCFF132WCZ, ENCFF193XZE, ENCFF232ZIV, ENCFF336ZDA, ENCFF534OEW, ENCFF617ALL, ENCFF642LCD, ENCFF665ASH, ENCFF680VLN, ENCFF688WUF, ENCFF750HPU, ENCFF751BYE, ENCFF927RRE, ENCFF985OET 5765063975 Anshul Kundaje, Stanford 73f8dd86091339bd29208f5b875ada38 https://www.encodeproject.org/files/ENCFF787DUW/@@download/ENCFF787DUW.bam GRCh38 released s3://encode-public/2017/04/01/fd194972-a98d-4da0-bace-78f202266d50/ENCFF787DUW.bam mismatched file status, experiment not submitted to GEO ENCFF912HGK bam alignments ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 ENCFF157FMZ, ENCFF334TQS, ENCFF520IRQ, ENCFF546WBL, ENCFF581SDL, ENCFF747LPX, ENCFF858GTH, ENCFF907KNE 5144936943 Anshul Kundaje, Stanford e20350ba8a866a35c9ea8bf281fbc159 https://www.encodeproject.org/files/ENCFF912HGK/@@download/ENCFF912HGK.bam GRCh38 released s3://encode-public/2017/04/01/0500cfbd-9ff5-4205-8d2d-50cf96fa598c/ENCFF912HGK.bam mismatched file status, experiment not submitted to GEO ENCFF812DSG fastq reads ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF493RBR 5060889366 Michael Snyder, Stanford 49d3a256fb6306ae1e31be50470ae8b7 https://www.encodeproject.org/files/ENCFF812DSG/@@download/ENCFF812DSG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/06791b3c-e51c-489c-ad09-2fe2775f082c/ENCFF812DSG.fastq.gz experiment not submitted to GEO ENCFF493RBR fastq reads ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF812DSG 5427803072 Michael Snyder, Stanford a67a9953e3e1f8893ba5d693f694688b https://www.encodeproject.org/files/ENCFF493RBR/@@download/ENCFF493RBR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/af8f03fa-a0f9-40d6-ac40-d2c3a2c5050a/ENCFF493RBR.fastq.gz experiment not submitted to GEO ENCFF765DRX bam alignments ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF493RBR, ENCFF812DSG 6921152296 Anshul Kundaje, Stanford 605d023cee3a7944c6553207ad7aaf5c https://www.encodeproject.org/files/ENCFF765DRX/@@download/ENCFF765DRX.bam GRCh38 released s3://encode-public/2016/12/22/138b6996-0115-4271-b89d-2f8b643fa3fb/ENCFF765DRX.bam experiment not submitted to GEO ENCFF979ESC bigWig signal p-value ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF765DRX 1281929307 Anshul Kundaje, Stanford 31db2e8ca316d3cbc8f395b98f724c57 https://www.encodeproject.org/files/ENCFF979ESC/@@download/ENCFF979ESC.bigWig GRCh38 released s3://encode-public/2016/12/22/bb761089-f1d6-48bf-9433-2448297ce4ac/ENCFF979ESC.bigWig experiment not submitted to GEO ENCFF801KAR bigWig fold change over control ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF765DRX 1394567006 Anshul Kundaje, Stanford 1f9b8ea7a454c342cdf54a17311645f0 https://www.encodeproject.org/files/ENCFF801KAR/@@download/ENCFF801KAR.bigWig GRCh38 released s3://encode-public/2016/12/22/c4868376-5115-4724-9253-32338181ace5/ENCFF801KAR.bigWig experiment not submitted to GEO ENCFF524LVZ fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF696YKQ 2074373294 Michael Snyder, Stanford 21ab410471120b5a4add63090a9eb556 https://www.encodeproject.org/files/ENCFF524LVZ/@@download/ENCFF524LVZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/781708aa-d5ee-4031-99e0-35bb9188b8f7/ENCFF524LVZ.fastq.gz experiment not submitted to GEO ENCFF696YKQ fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF524LVZ 2097555206 Michael Snyder, Stanford 69e168b8cbb0651a0f9b37f185cacc2e https://www.encodeproject.org/files/ENCFF696YKQ/@@download/ENCFF696YKQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/87eb95ea-2011-4402-a14f-51980e1b5b94/ENCFF696YKQ.fastq.gz experiment not submitted to GEO ENCFF112OLQ fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF463ZBN 1716783572 Michael Snyder, Stanford a866205c897ddb162dc79473c8932349 https://www.encodeproject.org/files/ENCFF112OLQ/@@download/ENCFF112OLQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/7bc50769-3b32-4236-8220-8e877d56992e/ENCFF112OLQ.fastq.gz experiment not submitted to GEO ENCFF463ZBN fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF112OLQ 1798305166 Michael Snyder, Stanford d78189e83955d50082c66b0acd972d8a https://www.encodeproject.org/files/ENCFF463ZBN/@@download/ENCFF463ZBN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/ca6ec84d-d940-4c4c-b054-3dd8db8c9d67/ENCFF463ZBN.fastq.gz experiment not submitted to GEO ENCFF830XMY bam alignments ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF112OLQ, ENCFF463ZBN, ENCFF524LVZ, ENCFF696YKQ 5367137273 Anshul Kundaje, Stanford dac99956f55701068448cf72c376af27 https://www.encodeproject.org/files/ENCFF830XMY/@@download/ENCFF830XMY.bam GRCh38 released s3://encode-public/2016/12/22/8a7c9055-2284-47c5-acca-ba06729eac6f/ENCFF830XMY.bam experiment not submitted to GEO ENCFF345CRC bigWig signal p-value ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF830XMY 546540470 Anshul Kundaje, Stanford 3d0d21f7612061a5e8de45870eae07e7 https://www.encodeproject.org/files/ENCFF345CRC/@@download/ENCFF345CRC.bigWig GRCh38 released s3://encode-public/2016/12/22/b0b7f155-1d3c-42b9-b2ce-592aaba4c29d/ENCFF345CRC.bigWig experiment not submitted to GEO ENCFF015FKA bigWig fold change over control ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF830XMY 823088782 Anshul Kundaje, Stanford cbaf84a268bffdc278d6fd8d03a951f1 https://www.encodeproject.org/files/ENCFF015FKA/@@download/ENCFF015FKA.bigWig GRCh38 released s3://encode-public/2016/12/22/79b8f73d-2f89-4c3d-9bc0-29544eb6da12/ENCFF015FKA.bigWig experiment not submitted to GEO ENCFF579GJX fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF564AVB 3640437501 Michael Snyder, Stanford 6b62441561210925f78186de3006033c https://www.encodeproject.org/files/ENCFF579GJX/@@download/ENCFF579GJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ed50579f-3d8a-4ab7-b2d4-796f954f6f30/ENCFF579GJX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF558QRD fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF319VSI 1607788349 Michael Snyder, Stanford 63cff2131b588a8d51caa9ac0f9dd693 https://www.encodeproject.org/files/ENCFF558QRD/@@download/ENCFF558QRD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8dd4be43-795b-41df-9446-e9c677a78aee/ENCFF558QRD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF319VSI fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF558QRD 1754763685 Michael Snyder, Stanford e7da5c4fc567b881432c519980a38ec6 https://www.encodeproject.org/files/ENCFF319VSI/@@download/ENCFF319VSI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/fb6d8efa-82f4-41e6-955b-3251e4ed5f07/ENCFF319VSI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF564AVB fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF579GJX 3526378959 Michael Snyder, Stanford 344fa59d400baf37f8bb9bd855e9583a https://www.encodeproject.org/files/ENCFF564AVB/@@download/ENCFF564AVB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a0ddff15-60f0-48f1-a886-0223fec27f64/ENCFF564AVB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF648VMU fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF030KZE 1890197072 Michael Snyder, Stanford f5ed76a5cffb64c36aaf2214fe8dfc09 https://www.encodeproject.org/files/ENCFF648VMU/@@download/ENCFF648VMU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ec2f9661-e426-46ca-848a-363f63061b4e/ENCFF648VMU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF704FBF fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF178HJF 573240775 Michael Snyder, Stanford e3e6bbab597327505176e330537a257a https://www.encodeproject.org/files/ENCFF704FBF/@@download/ENCFF704FBF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d1c6a2a2-074e-4ece-b4f2-8e9531102252/ENCFF704FBF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF172BNO fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF392VEN 653127954 Michael Snyder, Stanford 9c597e4b1203c35e677b69540a8724af https://www.encodeproject.org/files/ENCFF172BNO/@@download/ENCFF172BNO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e6fb2002-07c4-4e6e-ab75-b2a7190c10dc/ENCFF172BNO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF117YFJ fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF195TTM 2270807750 Michael Snyder, Stanford cad3b5e135c9400cb63e8b3ab68c3683 https://www.encodeproject.org/files/ENCFF117YFJ/@@download/ENCFF117YFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/12e0ec9c-4ea9-47bc-adfd-2aadd2b8bef8/ENCFF117YFJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF492GPM fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF721XIL 1251346129 Michael Snyder, Stanford 11e45d0a14794b3b49644109915eae8d https://www.encodeproject.org/files/ENCFF492GPM/@@download/ENCFF492GPM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/584ce2e8-7cd3-492d-9a2c-f4b9f6f49ba1/ENCFF492GPM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF718JWA fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF451NRS 1840029103 Michael Snyder, Stanford 879666c6e9e3604073a2158604602cb7 https://www.encodeproject.org/files/ENCFF718JWA/@@download/ENCFF718JWA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/813b5f44-0cd4-46f2-a33d-f51370bebfd5/ENCFF718JWA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF030KZE fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF648VMU 1716507626 Michael Snyder, Stanford 6ff3b8f6bbb8f8da7962ed5745584004 https://www.encodeproject.org/files/ENCFF030KZE/@@download/ENCFF030KZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9b40251f-d1f5-44e9-b24c-6db454c6f76c/ENCFF030KZE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF392VEN fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF172BNO 685448653 Michael Snyder, Stanford 1d484ae6f0550d7133e001a62b89046e https://www.encodeproject.org/files/ENCFF392VEN/@@download/ENCFF392VEN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6e8d9a03-d3c0-4764-9362-bfd5b65d8589/ENCFF392VEN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF451NRS fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF718JWA 1999774520 Michael Snyder, Stanford 79af3dfd8f1f593301350abb8633cce7 https://www.encodeproject.org/files/ENCFF451NRS/@@download/ENCFF451NRS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/17ac3dcf-420d-45e1-b9df-0c2d2e2f9686/ENCFF451NRS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF195TTM fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF117YFJ 2385533010 Michael Snyder, Stanford 86efe6a3e20a26c1f428c5830a9acf7c https://www.encodeproject.org/files/ENCFF195TTM/@@download/ENCFF195TTM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1fbeecea-9f2f-4c05-bb11-0084dfc9cc59/ENCFF195TTM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF174LCD fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF600QDG 1600886013 Michael Snyder, Stanford 41c5a5de5779b3c0621104c7dba5c6b9 https://www.encodeproject.org/files/ENCFF174LCD/@@download/ENCFF174LCD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/773ea73d-fd36-4573-b7c2-6c8041919622/ENCFF174LCD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF600QDG fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF174LCD 1691725639 Michael Snyder, Stanford 058e95368efe0c788631c37db60f04e0 https://www.encodeproject.org/files/ENCFF600QDG/@@download/ENCFF600QDG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/224de134-85e7-4a96-a7e2-abe20c79d12e/ENCFF600QDG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF721XIL fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF492GPM 1195768447 Michael Snyder, Stanford 5429e1d88bc0ba49068e40bcae5d416e https://www.encodeproject.org/files/ENCFF721XIL/@@download/ENCFF721XIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/75746858-8938-4ada-8034-5b1bbe4c4cec/ENCFF721XIL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF178HJF fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF704FBF 541805852 Michael Snyder, Stanford aca225f80ecda109b48cd5e91fb3c936 https://www.encodeproject.org/files/ENCFF178HJF/@@download/ENCFF178HJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/94df619e-d73c-4a8c-839b-b9e61f4b803e/ENCFF178HJF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF885IPV bam alignments ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 ENCFF117YFJ, ENCFF195TTM, ENCFF451NRS, ENCFF564AVB, ENCFF579GJX, ENCFF718JWA 7632903622 Anshul Kundaje, Stanford bb922951c4f7f9b83e3f8ce6d6b8a3c5 https://www.encodeproject.org/files/ENCFF885IPV/@@download/ENCFF885IPV.bam GRCh38 released s3://encode-public/2017/04/01/b5dcf572-1e92-4444-a2ac-ae7c989ac723/ENCFF885IPV.bam mismatched file status, experiment not submitted to GEO ENCFF678AIF bam alignments ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 ENCFF030KZE, ENCFF172BNO, ENCFF174LCD, ENCFF178HJF, ENCFF319VSI, ENCFF392VEN, ENCFF492GPM, ENCFF558QRD, ENCFF600QDG, ENCFF648VMU, ENCFF704FBF, ENCFF721XIL 7391514402 Anshul Kundaje, Stanford 6255a6805402c19140b7c7e2e056fc45 https://www.encodeproject.org/files/ENCFF678AIF/@@download/ENCFF678AIF.bam GRCh38 released s3://encode-public/2017/04/01/fbea0dbd-1643-4aa6-a893-a21cf6dbcb94/ENCFF678AIF.bam mismatched file status, experiment not submitted to GEO ENCFF817FUN fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF096HHA 1620730348 Michael Snyder, Stanford 376add8b1b444518526318170f93e099 https://www.encodeproject.org/files/ENCFF817FUN/@@download/ENCFF817FUN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0adbc7aa-cfe1-4fe9-9475-330bc09149a8/ENCFF817FUN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF544HIO fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF467YGO 3253282294 Michael Snyder, Stanford 108999d9965c58c36b9d208c4b41d28a https://www.encodeproject.org/files/ENCFF544HIO/@@download/ENCFF544HIO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/26685cac-04fe-437b-b099-8c25457f8022/ENCFF544HIO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF344XKP fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF609REL 1474748909 Michael Snyder, Stanford ade6c93909ced66176826391e8595188 https://www.encodeproject.org/files/ENCFF344XKP/@@download/ENCFF344XKP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/31858a60-14a0-48e8-9831-1f36db17171f/ENCFF344XKP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF915KAJ fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF820AOE 1363094933 Michael Snyder, Stanford 24f2e31ecf225331f74e76c5749c3c73 https://www.encodeproject.org/files/ENCFF915KAJ/@@download/ENCFF915KAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f74e036c-ebea-493f-abc6-6e5a9d4254df/ENCFF915KAJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF096HHA fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF817FUN 1749865302 Michael Snyder, Stanford 6ec95a19676c0ff04e2786326c138962 https://www.encodeproject.org/files/ENCFF096HHA/@@download/ENCFF096HHA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d37350c6-da77-461f-b420-9c7addaaa486/ENCFF096HHA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF820AOE fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF915KAJ 1468116683 Michael Snyder, Stanford 73978bf5981c119f3e56f4eccd0a0e8c https://www.encodeproject.org/files/ENCFF820AOE/@@download/ENCFF820AOE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ecc4040e-d21d-4f86-8aea-3e561ef608bf/ENCFF820AOE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF490LLO fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF641ZKC 3732761435 Michael Snyder, Stanford a4b78f589564f89e9335bf7bc3048021 https://www.encodeproject.org/files/ENCFF490LLO/@@download/ENCFF490LLO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b3e8e8c7-7a6e-4a03-afef-ecbddda65f96/ENCFF490LLO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF641ZKC fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF490LLO 3808197474 Michael Snyder, Stanford 684f71b0819bd383390009f5b91c41a0 https://www.encodeproject.org/files/ENCFF641ZKC/@@download/ENCFF641ZKC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6b56d07f-224b-470f-87ec-458bfb5b1489/ENCFF641ZKC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF467YGO fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF544HIO 3334875412 Michael Snyder, Stanford 45037adb6a55e6267ee696a288d641d1 https://www.encodeproject.org/files/ENCFF467YGO/@@download/ENCFF467YGO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c2aaa5d9-a0d2-4414-b72f-d5f913f0d9ea/ENCFF467YGO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF609REL fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF344XKP 1582679029 Michael Snyder, Stanford f182375bf30303f255819b96978086cf https://www.encodeproject.org/files/ENCFF609REL/@@download/ENCFF609REL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7748db69-1396-4f55-a069-dc2a06f31293/ENCFF609REL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF892QUG fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF925JTW 1220234884 Michael Snyder, Stanford a21da02a2eda89cb348a01c3f483141b https://www.encodeproject.org/files/ENCFF892QUG/@@download/ENCFF892QUG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/27ae6ec9-cdad-47e2-9a3c-512cde9548af/ENCFF892QUG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF925JTW fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF892QUG 1335545699 Michael Snyder, Stanford 89d0bae6627ce3b09fe9eabc3a03e97b https://www.encodeproject.org/files/ENCFF925JTW/@@download/ENCFF925JTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0880e575-52a1-4591-83ab-1a91859f43fd/ENCFF925JTW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF856LWQ fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF197ZVR 2714475769 Michael Snyder, Stanford 0268904b377d5a1a611c81a9c1d1aca4 https://www.encodeproject.org/files/ENCFF856LWQ/@@download/ENCFF856LWQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/21c92a4d-51d7-4875-8063-9665dbc1c1ce/ENCFF856LWQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF197ZVR fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF856LWQ 2723648173 Michael Snyder, Stanford 0edaafd45d5990e5fca6a4615a608069 https://www.encodeproject.org/files/ENCFF197ZVR/@@download/ENCFF197ZVR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/00b19646-2c0c-4727-a2af-0daeee4d2ee7/ENCFF197ZVR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF186TEU fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF945PUG 1096878082 Michael Snyder, Stanford 4c626a364d02e0b4f16f4dbabbe449a8 https://www.encodeproject.org/files/ENCFF186TEU/@@download/ENCFF186TEU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/434cde37-3b6f-49fb-a95e-804ab140d63c/ENCFF186TEU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF183ZSA fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF441EAM 1590606612 Michael Snyder, Stanford 5fefec137a9139533b1a2ff2a9d1e2e4 https://www.encodeproject.org/files/ENCFF183ZSA/@@download/ENCFF183ZSA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a5d77a16-5110-4080-b6a8-4d1ec2e85345/ENCFF183ZSA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF441EAM fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF183ZSA 1527492597 Michael Snyder, Stanford e92831cf8f829cfcbeca5968243b63fe https://www.encodeproject.org/files/ENCFF441EAM/@@download/ENCFF441EAM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/de5abed2-4680-43f2-b5e5-7fa11fd9825b/ENCFF441EAM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF945PUG fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF186TEU 1133730437 Michael Snyder, Stanford 3948c37431a2ddab8233277ba2b67dd3 https://www.encodeproject.org/files/ENCFF945PUG/@@download/ENCFF945PUG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6ea2c5b4-cfc6-4f45-887a-0f8a349fe273/ENCFF945PUG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF832AIE bam alignments ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 ENCFF344XKP, ENCFF467YGO, ENCFF490LLO, ENCFF544HIO, ENCFF609REL, ENCFF641ZKC, ENCFF820AOE, ENCFF915KAJ 6627096724 Anshul Kundaje, Stanford 5ddce1c64e724a11f85a3b4b589e10da https://www.encodeproject.org/files/ENCFF832AIE/@@download/ENCFF832AIE.bam GRCh38 released s3://encode-public/2017/04/01/b89bf178-d96b-4999-9a5a-6c57117d8247/ENCFF832AIE.bam mismatched file status, experiment not submitted to GEO ENCFF217OUE bam alignments ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 ENCFF096HHA, ENCFF183ZSA, ENCFF186TEU, ENCFF197ZVR, ENCFF441EAM, ENCFF817FUN, ENCFF856LWQ, ENCFF892QUG, ENCFF925JTW, ENCFF945PUG 6472064063 Anshul Kundaje, Stanford f27bc4e37ac52d2a7107640b2631a046 https://www.encodeproject.org/files/ENCFF217OUE/@@download/ENCFF217OUE.bam GRCh38 released s3://encode-public/2017/04/01/31776472-bc68-4b1b-a884-91b303bf70d2/ENCFF217OUE.bam mismatched file status, experiment not submitted to GEO ENCFF394BZR fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF063UIQ 12673183 Michael Snyder, Stanford 582d1b79b402d9ad750ffa6deb36b219 https://www.encodeproject.org/files/ENCFF394BZR/@@download/ENCFF394BZR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/904adc82-7e45-4747-9098-1684a5ca15db/ENCFF394BZR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF381EMR fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF019HPP 1358490278 Michael Snyder, Stanford 9db0efff4180e3f0949de21443abe96d https://www.encodeproject.org/files/ENCFF381EMR/@@download/ENCFF381EMR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b6cbd78a-5839-4509-9839-9cf7dbb544df/ENCFF381EMR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF856TGQ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF623ZYT 663910369 Michael Snyder, Stanford 17e7a02065ae1ee88c6eece4e9b8de84 https://www.encodeproject.org/files/ENCFF856TGQ/@@download/ENCFF856TGQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7057ba39-1399-4031-a0c0-fd2814c189a1/ENCFF856TGQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF153PXR fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF872UJJ 1053448566 Michael Snyder, Stanford 69220fc88dcb66b4464999effda1c71f https://www.encodeproject.org/files/ENCFF153PXR/@@download/ENCFF153PXR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4a8b8190-10ff-4907-8016-785407f8c3de/ENCFF153PXR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF273GYN fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF719DEW 1560168445 Michael Snyder, Stanford 9d58dc5fd50de415e3bd01a0704f5b95 https://www.encodeproject.org/files/ENCFF273GYN/@@download/ENCFF273GYN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8753efd6-4918-4a4b-8137-4a27403a6689/ENCFF273GYN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF007UZW fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF566UYO 714831509 Michael Snyder, Stanford d0f5fa9c1893cb35f8cc878b46eff42e https://www.encodeproject.org/files/ENCFF007UZW/@@download/ENCFF007UZW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d64dffd9-c471-463c-8bbd-61c9fef54482/ENCFF007UZW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF031AAH fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF663TJB 36336981 Michael Snyder, Stanford 7eebcb078a64d2d1e993fc9bb24b1c4f https://www.encodeproject.org/files/ENCFF031AAH/@@download/ENCFF031AAH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f72dd512-9a8f-46bc-883d-e5def90b8454/ENCFF031AAH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF063UIQ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF394BZR 13499797 Michael Snyder, Stanford 39e37dda6d7efd6b4093b6f9a47c636f https://www.encodeproject.org/files/ENCFF063UIQ/@@download/ENCFF063UIQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3af1c845-7f3b-46ab-bc32-b126fc315ffd/ENCFF063UIQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF887UVJ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF823ZMA 36852676 Michael Snyder, Stanford 18a1d8b8dc63fe3de1e3a7a73517609d https://www.encodeproject.org/files/ENCFF887UVJ/@@download/ENCFF887UVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f6f92815-5019-4f76-bb55-538e978063ec/ENCFF887UVJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF719DEW fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF273GYN 1710565502 Michael Snyder, Stanford 34295c7a454cd4661a7f7dd695def9c1 https://www.encodeproject.org/files/ENCFF719DEW/@@download/ENCFF719DEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/960ab87a-d61e-49d1-b318-e37717f98f66/ENCFF719DEW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF954GDA fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF483DEQ 1572807371 Michael Snyder, Stanford 10611fa01d19e7c5297ac04dc04967fc https://www.encodeproject.org/files/ENCFF954GDA/@@download/ENCFF954GDA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c1bae5c4-b1bf-4a3b-b1b0-43ddbcf470c6/ENCFF954GDA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF566UYO fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF007UZW 781514489 Michael Snyder, Stanford 9d3db225e1fb1d6f0ede03b411d2bb0a https://www.encodeproject.org/files/ENCFF566UYO/@@download/ENCFF566UYO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d10068b4-0d0e-4b5d-b51e-a549f52b7747/ENCFF566UYO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF823ZMA fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF887UVJ 36534852 Michael Snyder, Stanford 3ea6cc0bcfb1b9f912c4584a40c0e4bb https://www.encodeproject.org/files/ENCFF823ZMA/@@download/ENCFF823ZMA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c98d5a72-4e7c-413e-8ee0-58c263fabcda/ENCFF823ZMA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF019HPP fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF381EMR 1328794610 Michael Snyder, Stanford 3b7880c596f74c26f8182b6557b87188 https://www.encodeproject.org/files/ENCFF019HPP/@@download/ENCFF019HPP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1f47a2b2-9daf-46f0-8344-9612fc0cd5b9/ENCFF019HPP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF483DEQ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF954GDA 1669143845 Michael Snyder, Stanford 030054ca072116de8de851fff80cb4c3 https://www.encodeproject.org/files/ENCFF483DEQ/@@download/ENCFF483DEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0fc27515-fd51-4b0d-a690-6a87b4fa86ee/ENCFF483DEQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF663TJB fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF031AAH 33778019 Michael Snyder, Stanford 2384943c4f9a831ea5fc6d2b465c7aa8 https://www.encodeproject.org/files/ENCFF663TJB/@@download/ENCFF663TJB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/730bbb2f-ea39-43ac-ac4e-12bd7033c362/ENCFF663TJB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF623ZYT fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF856TGQ 675100641 Michael Snyder, Stanford 5e4ffdaf270c6f64856af15ef4f1f6fe https://www.encodeproject.org/files/ENCFF623ZYT/@@download/ENCFF623ZYT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/19b3061c-0820-4192-ada0-72ad5fdf0ded/ENCFF623ZYT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF872UJJ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF153PXR 1134513826 Michael Snyder, Stanford f8071364cf67467443e313bbab3cd6d9 https://www.encodeproject.org/files/ENCFF872UJJ/@@download/ENCFF872UJJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4a79db1a-118f-452e-82dc-cb842f7536fe/ENCFF872UJJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF980ABV fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF862WXI 1409088484 Michael Snyder, Stanford 83d00ac8ba67ebd66a734529913c2c25 https://www.encodeproject.org/files/ENCFF980ABV/@@download/ENCFF980ABV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/84a44af2-cdac-4bfe-990b-6fb0b994a8a2/ENCFF980ABV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF862WXI fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF980ABV 1471296102 Michael Snyder, Stanford e807a005251b6ade83730c65596ce42d https://www.encodeproject.org/files/ENCFF862WXI/@@download/ENCFF862WXI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/83d31008-c166-4ca2-8b57-46a3ef9fbd59/ENCFF862WXI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF374VWZ bam alignments ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 ENCFF007UZW, ENCFF153PXR, ENCFF273GYN, ENCFF483DEQ, ENCFF566UYO, ENCFF719DEW, ENCFF862WXI, ENCFF872UJJ, ENCFF954GDA, ENCFF980ABV 5339713402 Anshul Kundaje, Stanford 9e04bcda06ca4ad1e32b4f6f21f72b19 https://www.encodeproject.org/files/ENCFF374VWZ/@@download/ENCFF374VWZ.bam GRCh38 released s3://encode-public/2017/04/01/279c81cb-1a7e-447d-a266-753546818b65/ENCFF374VWZ.bam mismatched file status, experiment not submitted to GEO ENCFF588PIS bam alignments ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 ENCFF019HPP, ENCFF031AAH, ENCFF063UIQ, ENCFF381EMR, ENCFF394BZR, ENCFF623ZYT, ENCFF663TJB, ENCFF823ZMA, ENCFF856TGQ, ENCFF887UVJ 1645707250 Anshul Kundaje, Stanford f310dcda5400928744b1ca967c9e4ea6 https://www.encodeproject.org/files/ENCFF588PIS/@@download/ENCFF588PIS.bam GRCh38 released s3://encode-public/2017/04/01/2311510f-56b2-49a8-89e3-75b1db31a884/ENCFF588PIS.bam mismatched file status, experiment not submitted to GEO ENCFF520LZN fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 552735113 Barbara Wold, Caltech fcd79b9ac9226949166cedec66a5a34c https://www.encodeproject.org/files/ENCFF520LZN/@@download/ENCFF520LZN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/b8f84306-851e-40b1-ba4a-f6092eb9d6f8/ENCFF520LZN.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF232DPD fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 540645346 Barbara Wold, Caltech e87e6912d8c18c3d05d9dd29bc7df6dc https://www.encodeproject.org/files/ENCFF232DPD/@@download/ENCFF232DPD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/f08784c2-a026-41ac-a173-6f7480b369ce/ENCFF232DPD.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF589ZNO fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 769824454 Barbara Wold, Caltech 4f5607b11f8d0862943e66c1ef790722 https://www.encodeproject.org/files/ENCFF589ZNO/@@download/ENCFF589ZNO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/4e25c15f-e26c-4eb5-800c-3c9fc718c786/ENCFF589ZNO.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF949EKP fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 782712670 Barbara Wold, Caltech aebd2ed8e39ea6210321c625486e16ab https://www.encodeproject.org/files/ENCFF949EKP/@@download/ENCFF949EKP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/8c2a944d-efe1-48e2-abf5-f0568bebe4d7/ENCFF949EKP.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF114WRE bam alignments ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF232DPD, ENCFF520LZN, ENCFF589ZNO, ENCFF949EKP 1160414113 Anshul Kundaje, Stanford 2fa91977e839d115775f4335b45f98f9 https://www.encodeproject.org/files/ENCFF114WRE/@@download/ENCFF114WRE.bam GRCh38 released s3://encode-public/2017/05/11/5bbb8b93-a014-4222-b900-ed8756807e3f/ENCFF114WRE.bam experiment not submitted to GEO unreplicated experiment ENCFF541YRE bigWig fold change over control ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF114WRE 295210638 Anshul Kundaje, Stanford 0abd19e76cd16c7acc71d539627fb71e https://www.encodeproject.org/files/ENCFF541YRE/@@download/ENCFF541YRE.bigWig GRCh38 released s3://encode-public/2017/05/11/70e95f10-0a72-4e59-aae0-98eff7713b4f/ENCFF541YRE.bigWig experiment not submitted to GEO unreplicated experiment ENCFF057XST bigWig signal p-value ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF114WRE 229836443 Anshul Kundaje, Stanford 76ef018f4d3d1fe0b72a8a9f3a5f12da https://www.encodeproject.org/files/ENCFF057XST/@@download/ENCFF057XST.bigWig GRCh38 released s3://encode-public/2017/05/11/ed31f553-77d8-4a97-a68a-7edd52553c71/ENCFF057XST.bigWig experiment not submitted to GEO unreplicated experiment ENCFF556FLA fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF966BNE 1569652912 Michael Snyder, Stanford 4e836ab60db9522d6804763f5013d166 https://www.encodeproject.org/files/ENCFF556FLA/@@download/ENCFF556FLA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a8a8ddcd-ed46-4d98-88fe-46087e4c19d5/ENCFF556FLA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF897PRE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF822IHI 2525823237 Michael Snyder, Stanford 281643048153393579e5b842a46f92fb https://www.encodeproject.org/files/ENCFF897PRE/@@download/ENCFF897PRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0f5ce0ac-bb6f-4ab3-931b-55a2cc38603a/ENCFF897PRE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF830XRG fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF442KHM 3237455021 Michael Snyder, Stanford 45dc728bcb08aef85e749347e864324f https://www.encodeproject.org/files/ENCFF830XRG/@@download/ENCFF830XRG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c61a8d42-81f5-48ed-ae0b-0c69ea47350b/ENCFF830XRG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF184KSH fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF515YWE 1775094165 Michael Snyder, Stanford ad72e26264bc75ae533307b8c9e1cb1f https://www.encodeproject.org/files/ENCFF184KSH/@@download/ENCFF184KSH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4239d211-82db-467e-941e-1e6a8182174b/ENCFF184KSH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF966BNE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF556FLA 1722506058 Michael Snyder, Stanford 703ba46e7666b37f1818f58ca6c6f9b5 https://www.encodeproject.org/files/ENCFF966BNE/@@download/ENCFF966BNE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/fb6bd89f-862f-4e35-89ad-1e49d305e9ac/ENCFF966BNE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF921NTH fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF095SKI 2195709203 Michael Snyder, Stanford e4069ab759edb39057c3e6c6ef7cf50f https://www.encodeproject.org/files/ENCFF921NTH/@@download/ENCFF921NTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/23b08bbc-efd9-445c-adf0-5ab640ce5122/ENCFF921NTH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF191EDJ fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF793IRQ 1156902967 Michael Snyder, Stanford cab08a66b087e790e7beb5fec860587c https://www.encodeproject.org/files/ENCFF191EDJ/@@download/ENCFF191EDJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c9feb408-d4d9-4efc-8b92-0c01d5d3521b/ENCFF191EDJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF696LEH fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF234NJI 1817751805 Michael Snyder, Stanford 854470553a1dde2eed00cbdefa65ba63 https://www.encodeproject.org/files/ENCFF696LEH/@@download/ENCFF696LEH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/495a44e2-3218-41ae-bf72-d6d95f285341/ENCFF696LEH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF442KHM fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF830XRG 3117276150 Michael Snyder, Stanford 00a6e29282b8fc8e78672f0e3b641a24 https://www.encodeproject.org/files/ENCFF442KHM/@@download/ENCFF442KHM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/644a80a4-5fd1-4c4d-8a01-1fd0c69e9dab/ENCFF442KHM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF748DSB fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF663BDW 1058325187 Michael Snyder, Stanford 062201341c8e6c024df22813cc951de7 https://www.encodeproject.org/files/ENCFF748DSB/@@download/ENCFF748DSB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8d15d680-3434-4651-9ba0-ed7efc8c9bf9/ENCFF748DSB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF234NJI fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF696LEH 2001378888 Michael Snyder, Stanford d34b731956c88236034d2af39f4307ee https://www.encodeproject.org/files/ENCFF234NJI/@@download/ENCFF234NJI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/48a17c37-da2a-4fd5-9b34-95325be685ad/ENCFF234NJI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF822IHI fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF897PRE 2743623795 Michael Snyder, Stanford 2bbfba91de72fe407d1258b99a8d8f2a https://www.encodeproject.org/files/ENCFF822IHI/@@download/ENCFF822IHI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/91498c8e-3b6f-4051-8838-7caf2e140e2b/ENCFF822IHI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF586ZZA fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF788EBU 1027900720 Michael Snyder, Stanford 158b206e98c21797af8e3ecffa376694 https://www.encodeproject.org/files/ENCFF586ZZA/@@download/ENCFF586ZZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f6336d16-3aa2-40ff-938c-41b6bfb8f4b0/ENCFF586ZZA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF515YWE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF184KSH 1702630041 Michael Snyder, Stanford 7dd7190ce2913286f7e0a908be9b9d21 https://www.encodeproject.org/files/ENCFF515YWE/@@download/ENCFF515YWE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8ec849d8-96cf-4a2a-81fc-c49600100326/ENCFF515YWE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF548SJE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF221ONZ 1437608878 Michael Snyder, Stanford 55bbf009927581d59d53e6fc1fe589ac https://www.encodeproject.org/files/ENCFF548SJE/@@download/ENCFF548SJE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/72e1f5f6-15fe-462f-b720-c456246da112/ENCFF548SJE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF095SKI fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF921NTH 2080576945 Michael Snyder, Stanford 1ad4a8ba36925a364c0a7b52961bdc37 https://www.encodeproject.org/files/ENCFF095SKI/@@download/ENCFF095SKI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/10f03779-7bfe-440c-9e36-ab712a647a56/ENCFF095SKI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF663BDW fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF748DSB 1018341280 Michael Snyder, Stanford 6ec14a0a5c816d947f1f397a3ade32e3 https://www.encodeproject.org/files/ENCFF663BDW/@@download/ENCFF663BDW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c24707fa-8b6c-4152-8a28-ea0e5421616b/ENCFF663BDW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF221ONZ fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF548SJE 1524618309 Michael Snyder, Stanford 9a50b2ac637a4016f3e49d74c696434b https://www.encodeproject.org/files/ENCFF221ONZ/@@download/ENCFF221ONZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a73b0a67-9886-43f3-9c4e-11bbb871c9a6/ENCFF221ONZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF793IRQ fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF191EDJ 1286151062 Michael Snyder, Stanford 0ae5d939321598378e837b6c0ad05975 https://www.encodeproject.org/files/ENCFF793IRQ/@@download/ENCFF793IRQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5dde89df-9b0e-4e58-939f-bd0632cb9518/ENCFF793IRQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF788EBU fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF586ZZA 1081929314 Michael Snyder, Stanford af72113e622791346295dbd8f3f83ae2 https://www.encodeproject.org/files/ENCFF788EBU/@@download/ENCFF788EBU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/412959ea-4f4d-418e-a394-81cd29714460/ENCFF788EBU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF907NVD bam alignments ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 ENCFF095SKI, ENCFF191EDJ, ENCFF221ONZ, ENCFF548SJE, ENCFF556FLA, ENCFF586ZZA, ENCFF788EBU, ENCFF793IRQ, ENCFF921NTH, ENCFF966BNE 7954402698 Anshul Kundaje, Stanford 3614e6863712937e947a5c7a941a76d7 https://www.encodeproject.org/files/ENCFF907NVD/@@download/ENCFF907NVD.bam GRCh38 released s3://encode-public/2017/04/01/0d0a2849-1dc8-4a4f-a387-8698b45abf76/ENCFF907NVD.bam mismatched file status, experiment not submitted to GEO ENCFF799HAR bam alignments ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 ENCFF184KSH, ENCFF234NJI, ENCFF442KHM, ENCFF515YWE, ENCFF663BDW, ENCFF696LEH, ENCFF748DSB, ENCFF822IHI, ENCFF830XRG, ENCFF897PRE 8910181734 Anshul Kundaje, Stanford a76f2f46da72fcb8c737f3521185aa6d https://www.encodeproject.org/files/ENCFF799HAR/@@download/ENCFF799HAR.bam GRCh38 released s3://encode-public/2017/04/01/1ded0e98-a51b-41e0-ac35-e38dd82d9077/ENCFF799HAR.bam mismatched file status, experiment not submitted to GEO ENCFF564OUO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF008DNY 1333821272 Michael Snyder, Stanford d03f5313df1620b93e23bb122c452582 https://www.encodeproject.org/files/ENCFF564OUO/@@download/ENCFF564OUO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2f14fbf9-21b0-4382-9363-aa2443139e5a/ENCFF564OUO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF256MSA fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF422QIJ 2354868368 Michael Snyder, Stanford 2af5008a333ac136e5ee50849e439095 https://www.encodeproject.org/files/ENCFF256MSA/@@download/ENCFF256MSA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d5e5ab3c-213d-4f29-b9cd-a79e76e6c58a/ENCFF256MSA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF792MLQ fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF968PTT 1142790968 Michael Snyder, Stanford 554b6f6cf5da4ce8a496e0003115c20e https://www.encodeproject.org/files/ENCFF792MLQ/@@download/ENCFF792MLQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4033c4b6-f470-4239-b034-d97eff455b1c/ENCFF792MLQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF968PTT fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF792MLQ 1129565570 Michael Snyder, Stanford 2227f073f1f0bbc17abff6ecb372ffa0 https://www.encodeproject.org/files/ENCFF968PTT/@@download/ENCFF968PTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9f8b0333-c854-4bb9-9e6b-38a3684e73eb/ENCFF968PTT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF018JJG fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF013WVO 2029813349 Michael Snyder, Stanford ac662c98a53745f223e9120266b56058 https://www.encodeproject.org/files/ENCFF018JJG/@@download/ENCFF018JJG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/12ce7576-37e5-401b-8a9b-5faff270c266/ENCFF018JJG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF361YRS fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF793EJO 1575138339 Michael Snyder, Stanford 902bfd1fee0e21b80edad1b958c9bc71 https://www.encodeproject.org/files/ENCFF361YRS/@@download/ENCFF361YRS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9ecbf4d4-4992-49d2-96b4-6dfa242d6210/ENCFF361YRS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF422QIJ fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF256MSA 2148772785 Michael Snyder, Stanford 19573c5bdde523f00bbe11ce7e083c5e https://www.encodeproject.org/files/ENCFF422QIJ/@@download/ENCFF422QIJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/736775e7-9b28-4f16-9ca6-aeba8d2fbeb7/ENCFF422QIJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF419LTU fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF217MLO 3020009706 Michael Snyder, Stanford 0c63e5d379d6ef9a5c466e391a5d3dba https://www.encodeproject.org/files/ENCFF419LTU/@@download/ENCFF419LTU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0691362a-4169-427d-85b3-a47ed02eedde/ENCFF419LTU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF217MLO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF419LTU 2772454747 Michael Snyder, Stanford 1d95418735535a560b063149b0f617c7 https://www.encodeproject.org/files/ENCFF217MLO/@@download/ENCFF217MLO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/192b9861-0d45-42d4-8f38-4b5562e28dc8/ENCFF217MLO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF013WVO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF018JJG 2118361937 Michael Snyder, Stanford c68fe0b5a7b9d43b1ad52bbf6de67b58 https://www.encodeproject.org/files/ENCFF013WVO/@@download/ENCFF013WVO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d025e909-0031-4977-844e-8999282d1d88/ENCFF013WVO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF793EJO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF361YRS 1637028387 Michael Snyder, Stanford 90b5c638f9b9e84b31c022018c4721f5 https://www.encodeproject.org/files/ENCFF793EJO/@@download/ENCFF793EJO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d09c7f03-070d-47b6-8afb-a9c0739f13f1/ENCFF793EJO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF881RKR fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF304KND 2360582029 Michael Snyder, Stanford 29f61853a5d48a7f4ea04e3a4b9e7e2b https://www.encodeproject.org/files/ENCFF881RKR/@@download/ENCFF881RKR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/87defbef-3d0b-4473-815c-dbfaa8cab0c5/ENCFF881RKR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF304KND fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF881RKR 2486708251 Michael Snyder, Stanford e7444553b283cdae81b4a6f957a0c5e5 https://www.encodeproject.org/files/ENCFF304KND/@@download/ENCFF304KND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/01c47e2b-bc60-4ab6-88ee-1140329bdc46/ENCFF304KND.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF008DNY fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF564OUO 1475716203 Michael Snyder, Stanford 981af3d289ee4d92a017feffedaa50fa https://www.encodeproject.org/files/ENCFF008DNY/@@download/ENCFF008DNY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6b05bde7-d1e9-4338-9ccd-199912af7fde/ENCFF008DNY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927PPE bam alignments ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 ENCFF008DNY, ENCFF217MLO, ENCFF304KND, ENCFF361YRS, ENCFF419LTU, ENCFF564OUO, ENCFF793EJO, ENCFF881RKR 8287178246 Anshul Kundaje, Stanford 0d4f9e63e6ca8b5c187569a57395fd2a https://www.encodeproject.org/files/ENCFF927PPE/@@download/ENCFF927PPE.bam GRCh38 released s3://encode-public/2017/04/01/63d991a9-0dd9-4202-ab13-38d7084bd221/ENCFF927PPE.bam mismatched file status, experiment not submitted to GEO ENCFF629VEK bam alignments ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 ENCFF013WVO, ENCFF018JJG, ENCFF256MSA, ENCFF422QIJ, ENCFF792MLQ, ENCFF968PTT 5529147440 Anshul Kundaje, Stanford 0a1d439ec36370bed2391abb2e66328b https://www.encodeproject.org/files/ENCFF629VEK/@@download/ENCFF629VEK.bam GRCh38 released s3://encode-public/2017/04/01/9eba7ce3-b9b3-4d60-b010-00f12deadac6/ENCFF629VEK.bam mismatched file status, experiment not submitted to GEO ENCFF524RSU fastq reads ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 1 100 paired-ended 2 ENCFF547CYZ 2517369199 Michael Snyder, Stanford ac0e80f8bb90977c2a5f1c0fdfbe5645 https://www.encodeproject.org/files/ENCFF524RSU/@@download/ENCFF524RSU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/4dc8cbff-60a2-403f-8cb7-ae4a71e20e78/ENCFF524RSU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF547CYZ fastq reads ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 1 100 paired-ended 1 ENCFF524RSU 2488714517 Michael Snyder, Stanford 93044ed43803a087df2b8bd69e7add37 https://www.encodeproject.org/files/ENCFF547CYZ/@@download/ENCFF547CYZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/67c5f39a-46cc-42e8-b9e0-ff5917fe4184/ENCFF547CYZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF374OSU bam alignments ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 ENCFF524RSU, ENCFF547CYZ 1739581090 Anshul Kundaje, Stanford d68829a9f2c2a0f4e9012b77a5816415 https://www.encodeproject.org/files/ENCFF374OSU/@@download/ENCFF374OSU.bam GRCh38 released s3://encode-public/2017/06/01/ef247513-49d3-4649-ae3d-dfe75356b0dd/ENCFF374OSU.bam mismatched file status, experiment not submitted to GEO ENCFF111XAE bigWig signal p-value ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 ENCFF374OSU 193560731 Anshul Kundaje, Stanford 698983ee23fb0338a6ef78bec1601f38 https://www.encodeproject.org/files/ENCFF111XAE/@@download/ENCFF111XAE.bigWig GRCh38 released s3://encode-public/2017/06/01/1186eeec-4609-4028-878b-bdf0261204ea/ENCFF111XAE.bigWig mismatched file status, experiment not submitted to GEO ENCFF095LJC bigWig fold change over control ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 ENCFF374OSU 250996630 Anshul Kundaje, Stanford 475f4e82a6175c3a3d4881be42ec951d https://www.encodeproject.org/files/ENCFF095LJC/@@download/ENCFF095LJC.bigWig GRCh38 released s3://encode-public/2017/06/01/bc5eda4e-5c5d-4061-a4ac-2366e2900a09/ENCFF095LJC.bigWig mismatched file status, experiment not submitted to GEO ENCFF703BZC fastq reads ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF502PHC 1978216648 Michael Snyder, Stanford d06b011ead318644f418c3e30b81337b https://www.encodeproject.org/files/ENCFF703BZC/@@download/ENCFF703BZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/5dcc0a00-a5c6-4d72-8652-a5bc5f1431aa/ENCFF703BZC.fastq.gz experiment not submitted to GEO ENCFF502PHC fastq reads ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF703BZC 1938330598 Michael Snyder, Stanford 719cc23817f9dd6f1177eb58eaeaf781 https://www.encodeproject.org/files/ENCFF502PHC/@@download/ENCFF502PHC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/dc574103-0697-4e31-b5b1-01cdff59432c/ENCFF502PHC.fastq.gz experiment not submitted to GEO ENCFF388DNI bam alignments ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF502PHC, ENCFF703BZC 1770560274 Anshul Kundaje, Stanford 4cf2ad0354b8ee7c8ed72f68f6afdc5e https://www.encodeproject.org/files/ENCFF388DNI/@@download/ENCFF388DNI.bam GRCh38 released s3://encode-public/2017/04/01/907c4933-783a-4b0a-8bd1-ae79dbdce5f6/ENCFF388DNI.bam experiment not submitted to GEO ENCFF074XBT bigWig signal p-value ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF388DNI 222922851 Anshul Kundaje, Stanford 65ee908808e00042f36ec2ae37597c78 https://www.encodeproject.org/files/ENCFF074XBT/@@download/ENCFF074XBT.bigWig GRCh38 released s3://encode-public/2017/04/01/f9ee6bb2-edde-47e7-b05f-3c2eb54b920a/ENCFF074XBT.bigWig experiment not submitted to GEO ENCFF481FBE bigWig fold change over control ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF388DNI 280944585 Anshul Kundaje, Stanford f3955da1bcecb9a937b7f9ef210ec656 https://www.encodeproject.org/files/ENCFF481FBE/@@download/ENCFF481FBE.bigWig GRCh38 released s3://encode-public/2017/04/01/c8668d38-e2c4-4b6c-95c2-ca8fc3fc1b47/ENCFF481FBE.bigWig experiment not submitted to GEO ENCFF272PIN fastq reads ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF735IXH 3798722636 Michael Snyder, Stanford f84d974dfda1131920cc4cbe00535b49 https://www.encodeproject.org/files/ENCFF272PIN/@@download/ENCFF272PIN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/1e93bd48-64ee-4400-b9c4-800c6e94f60d/ENCFF272PIN.fastq.gz experiment not submitted to GEO ENCFF735IXH fastq reads ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF272PIN 4157015822 Michael Snyder, Stanford b8703b2542cd234b9e976a93bca5f2d6 https://www.encodeproject.org/files/ENCFF735IXH/@@download/ENCFF735IXH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/04cf9e72-59bb-4601-891a-0475b82e8175/ENCFF735IXH.fastq.gz experiment not submitted to GEO ENCFF319VDG bigWig signal p-value ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF782KTJ 926884548 Anshul Kundaje, Stanford e8b34cd931cce6f2a1d4be4c0cb5c0b5 https://www.encodeproject.org/files/ENCFF319VDG/@@download/ENCFF319VDG.bigWig GRCh38 released s3://encode-public/2017/02/09/f7a0a7d7-ca87-4386-9a00-58f3940b941c/ENCFF319VDG.bigWig experiment not submitted to GEO ENCFF782KTJ bam alignments ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF272PIN, ENCFF735IXH 5336882597 Anshul Kundaje, Stanford 3df362ac9137f20604f669ba2514d092 https://www.encodeproject.org/files/ENCFF782KTJ/@@download/ENCFF782KTJ.bam GRCh38 released s3://encode-public/2017/02/09/1f59a6a5-54ab-4513-b5e4-c068efacef9f/ENCFF782KTJ.bam experiment not submitted to GEO ENCFF911QNT bigWig fold change over control ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF782KTJ 1303933418 Anshul Kundaje, Stanford 177213812b391db22d2590c7cff738d7 https://www.encodeproject.org/files/ENCFF911QNT/@@download/ENCFF911QNT.bigWig GRCh38 released s3://encode-public/2017/02/09/52583366-9008-46f6-abbd-bd6928981501/ENCFF911QNT.bigWig experiment not submitted to GEO ENCFF538JTF fastq reads ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF442BMJ 2314343502 Michael Snyder, Stanford f566d389af455ee7513f7e3c7d35b9b9 https://www.encodeproject.org/files/ENCFF538JTF/@@download/ENCFF538JTF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/e92770a2-6126-4a85-9106-1fa9930ea658/ENCFF538JTF.fastq.gz experiment not submitted to GEO ENCFF442BMJ fastq reads ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF538JTF 2497214791 Michael Snyder, Stanford 4043aa79c325ed2445eec8114d7013bf https://www.encodeproject.org/files/ENCFF442BMJ/@@download/ENCFF442BMJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/93334ebc-00cf-4b56-b966-502fc79fe51d/ENCFF442BMJ.fastq.gz experiment not submitted to GEO ENCFF135RTS bam alignments ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF442BMJ, ENCFF538JTF 3094147735 Anshul Kundaje, Stanford b1f8dd2e1672522c3a38063c9b1c22a7 https://www.encodeproject.org/files/ENCFF135RTS/@@download/ENCFF135RTS.bam GRCh38 released s3://encode-public/2017/02/08/92c8142e-ea03-4260-a607-9dbda8f10404/ENCFF135RTS.bam experiment not submitted to GEO ENCFF353OXO bigWig fold change over control ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF135RTS 712603368 Anshul Kundaje, Stanford d95246008fb2957ed7037c5b25c350ea https://www.encodeproject.org/files/ENCFF353OXO/@@download/ENCFF353OXO.bigWig GRCh38 released s3://encode-public/2017/02/08/8f6146d6-e2ef-4e38-8cc3-3aa34025d735/ENCFF353OXO.bigWig experiment not submitted to GEO ENCFF158OVK bigWig signal p-value ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF135RTS 760393577 Anshul Kundaje, Stanford 01b6820757955459aafb28cd0f320c5d https://www.encodeproject.org/files/ENCFF158OVK/@@download/ENCFF158OVK.bigWig GRCh38 released s3://encode-public/2017/02/08/b8a1c889-431c-44ed-82e5-6310b2a38995/ENCFF158OVK.bigWig experiment not submitted to GEO ENCFF859GMX fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF160AIC 2623376145 Michael Snyder, Stanford d91117c0963d682a71f123e687b08533 https://www.encodeproject.org/files/ENCFF859GMX/@@download/ENCFF859GMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7503d724-7a98-4934-9c62-e178965f55bc/ENCFF859GMX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF590DAW fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF931GOA 2908974544 Michael Snyder, Stanford 5508dff681f7d04c5ad6a04058208823 https://www.encodeproject.org/files/ENCFF590DAW/@@download/ENCFF590DAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/95995a0c-e120-4999-9817-b4fc377a312b/ENCFF590DAW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF733BMQ fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF705WCP 960923691 Michael Snyder, Stanford 791c617c65c9891b598ee745a4877b4b https://www.encodeproject.org/files/ENCFF733BMQ/@@download/ENCFF733BMQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ea043a40-a53b-4117-a5d0-c3e1d3fc7d17/ENCFF733BMQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF301DOO fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF061PNY 544093592 Michael Snyder, Stanford 08a653bca5c95a010d2ff88b19844002 https://www.encodeproject.org/files/ENCFF301DOO/@@download/ENCFF301DOO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3893a75c-0eed-4311-b7d2-7e250cfffcb7/ENCFF301DOO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF061PNY fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF301DOO 589175190 Michael Snyder, Stanford a1c70bcaefd83bdbaba2639f3e9cebec https://www.encodeproject.org/files/ENCFF061PNY/@@download/ENCFF061PNY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e72025aa-e2e1-4a92-a3c4-fe9ffcf3a998/ENCFF061PNY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF127WYM fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 2 ENCFF629ULU 351593135 Michael Snyder, Stanford b9cc8a71f2c09762c8311bdc30c28c30 https://www.encodeproject.org/files/ENCFF127WYM/@@download/ENCFF127WYM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bf83f013-2e6e-4d2a-bb06-a156e3f6df73/ENCFF127WYM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF417FSB fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF095GXA 1880874756 Michael Snyder, Stanford b01341f25e4c07e971fbda6217840190 https://www.encodeproject.org/files/ENCFF417FSB/@@download/ENCFF417FSB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/682b417b-9696-403d-ab2d-06d2df569fc4/ENCFF417FSB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF108BMP fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF330EMX 1854535166 Michael Snyder, Stanford b68dea4a063ed8df6a8e37bcffa3b1a3 https://www.encodeproject.org/files/ENCFF108BMP/@@download/ENCFF108BMP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6f226ff1-c454-4c10-a141-f7b433e025bd/ENCFF108BMP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF923RCA fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF097KAV 1188931313 Michael Snyder, Stanford 646912e98a0f4ba8229ff2ec60e69c6a https://www.encodeproject.org/files/ENCFF923RCA/@@download/ENCFF923RCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/66e68a28-e6dd-47ac-bcc1-0be186982396/ENCFF923RCA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF884HTT fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF791IPF 983430336 Michael Snyder, Stanford 45b12c19f5060822c749d4244c572a51 https://www.encodeproject.org/files/ENCFF884HTT/@@download/ENCFF884HTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8de6371a-81d5-4566-8c27-076927dfd2d1/ENCFF884HTT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF398EZJ fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF245AMP 1857954918 Michael Snyder, Stanford d1035e5abdf28f7bf4bfd8e40ab5f0c3 https://www.encodeproject.org/files/ENCFF398EZJ/@@download/ENCFF398EZJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/853c5cb7-2764-45a6-bd6a-5e52c0d3a21f/ENCFF398EZJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF160AIC fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF859GMX 2663845726 Michael Snyder, Stanford 3aec59d94c488f20c86b9736b83e12e3 https://www.encodeproject.org/files/ENCFF160AIC/@@download/ENCFF160AIC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d3835ba7-b0e7-4cb6-beee-b7b7716d309f/ENCFF160AIC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF097KAV fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF923RCA 1166961109 Michael Snyder, Stanford 827537c3eca35a290081d9110e008c47 https://www.encodeproject.org/files/ENCFF097KAV/@@download/ENCFF097KAV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c04180a4-ae9f-4ed0-a52b-c99521eb40df/ENCFF097KAV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF095GXA fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF417FSB 2033758790 Michael Snyder, Stanford afe65099cac1d32c3dd09cc8314b7afd https://www.encodeproject.org/files/ENCFF095GXA/@@download/ENCFF095GXA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6d7930aa-f8ef-42bc-8a8d-3c9669c91e86/ENCFF095GXA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF791IPF fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF884HTT 936848547 Michael Snyder, Stanford 3a994b3d486e50a7b974f566111a32c5 https://www.encodeproject.org/files/ENCFF791IPF/@@download/ENCFF791IPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4103435a-cea0-4a02-bda9-16618e14def6/ENCFF791IPF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF330EMX fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF108BMP 2003810918 Michael Snyder, Stanford 5f8eafa2bf2d5cc1a0bf776aedb40050 https://www.encodeproject.org/files/ENCFF330EMX/@@download/ENCFF330EMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e3278079-9397-4e7c-adf8-c2e1806d24ec/ENCFF330EMX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF245AMP fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF398EZJ 1862024936 Michael Snyder, Stanford 006ad056bee5f56e303b2e41dcb36b6f https://www.encodeproject.org/files/ENCFF245AMP/@@download/ENCFF245AMP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/dfb36257-cac2-4cf1-a40e-c5664870b38a/ENCFF245AMP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF705WCP fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF733BMQ 1051560738 Michael Snyder, Stanford ed0a291f1c3558d122c72a42336383f5 https://www.encodeproject.org/files/ENCFF705WCP/@@download/ENCFF705WCP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e53a39c4-1f02-461a-a006-51ef8dd01611/ENCFF705WCP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF629ULU fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 1 ENCFF127WYM 318396428 Michael Snyder, Stanford 81572beac028c2ea9f26ccdf48850bbc https://www.encodeproject.org/files/ENCFF629ULU/@@download/ENCFF629ULU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/da3fb5dd-614c-43d9-8de0-95e15d8a2230/ENCFF629ULU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF931GOA fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF590DAW 2641440177 Michael Snyder, Stanford a1cfc3e0f8622475ad0761a78b76ca9b https://www.encodeproject.org/files/ENCFF931GOA/@@download/ENCFF931GOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2053e25a-aff1-4d24-9c5e-6d4875d5b68d/ENCFF931GOA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF305PRP bam alignments ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 ENCFF095GXA, ENCFF417FSB, ENCFF590DAW, ENCFF705WCP, ENCFF733BMQ, ENCFF791IPF, ENCFF884HTT, ENCFF931GOA 3891922628 Anshul Kundaje, Stanford 14ddc32c592a4a688d90814e38033404 https://www.encodeproject.org/files/ENCFF305PRP/@@download/ENCFF305PRP.bam GRCh38 released s3://encode-public/2017/04/01/ba4baf64-5697-476b-b8a0-5f0bbe0a9a3e/ENCFF305PRP.bam mismatched file status, experiment not submitted to GEO ENCFF607XLB bam alignments ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 ENCFF061PNY, ENCFF097KAV, ENCFF108BMP, ENCFF127WYM, ENCFF160AIC, ENCFF245AMP, ENCFF301DOO, ENCFF330EMX, ENCFF398EZJ, ENCFF629ULU, ENCFF859GMX, ENCFF923RCA 6030071037 Anshul Kundaje, Stanford 83e827cfb84a0e3f75736f64ddc4bfb3 https://www.encodeproject.org/files/ENCFF607XLB/@@download/ENCFF607XLB.bam GRCh38 released s3://encode-public/2017/04/01/f7088066-0ee3-457b-8c55-93df91ba717a/ENCFF607XLB.bam mismatched file status, experiment not submitted to GEO ENCFF138HVL fastq reads ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF496OHD 2875682471 Michael Snyder, Stanford c7811ebe0d0d1c14591e862fc26cf58b https://www.encodeproject.org/files/ENCFF138HVL/@@download/ENCFF138HVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/59cc243e-bed6-4962-8c81-e65d8b4de8b8/ENCFF138HVL.fastq.gz experiment not submitted to GEO ENCFF496OHD fastq reads ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF138HVL 2667937784 Michael Snyder, Stanford 4eed3b6b5945264ec0061ddc7fc71ac4 https://www.encodeproject.org/files/ENCFF496OHD/@@download/ENCFF496OHD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/4008008f-59bc-4ffc-a602-303f39a647d1/ENCFF496OHD.fastq.gz experiment not submitted to GEO ENCFF469OER bam alignments ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF138HVL, ENCFF496OHD 3477566868 Anshul Kundaje, Stanford c04ab5f2125e6de9e55a009a77f1e7d3 https://www.encodeproject.org/files/ENCFF469OER/@@download/ENCFF469OER.bam GRCh38 released s3://encode-public/2017/02/09/d5dc8824-f2e5-43e6-81a2-cb9a6d819692/ENCFF469OER.bam experiment not submitted to GEO ENCFF332HRH bigWig signal p-value ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF469OER 679669144 Anshul Kundaje, Stanford c80df3241083a2ad2d4ae55ca1fa8994 https://www.encodeproject.org/files/ENCFF332HRH/@@download/ENCFF332HRH.bigWig GRCh38 released s3://encode-public/2017/02/09/5defc10b-236f-4168-b1d5-4d59d3b8bb87/ENCFF332HRH.bigWig experiment not submitted to GEO ENCFF087LJV bigWig fold change over control ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF469OER 823669949 Anshul Kundaje, Stanford 50d0795e9b53bb0ef53155460a7676ef https://www.encodeproject.org/files/ENCFF087LJV/@@download/ENCFF087LJV.bigWig GRCh38 released s3://encode-public/2017/02/09/23b92b3e-e771-40c4-bef2-e6b1a9a0f8fd/ENCFF087LJV.bigWig experiment not submitted to GEO ENCFF049NKX fastq reads ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF089IIY 2754227386 Michael Snyder, Stanford d89e83d5b0cd7f22331d0d1545eb6472 https://www.encodeproject.org/files/ENCFF049NKX/@@download/ENCFF049NKX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/c8911e03-5602-438b-a0b8-23ec99a6b40e/ENCFF049NKX.fastq.gz experiment not submitted to GEO ENCFF089IIY fastq reads ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF049NKX 3103212538 Michael Snyder, Stanford 98c020b0a3e2df82628aea2a2031c1bc https://www.encodeproject.org/files/ENCFF089IIY/@@download/ENCFF089IIY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/f40b5563-3c7e-4421-9ca9-5a2c1ce2d9f9/ENCFF089IIY.fastq.gz experiment not submitted to GEO ENCFF900AMT bam alignments ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF049NKX, ENCFF089IIY 3558635153 Anshul Kundaje, Stanford 6e5209e69ac99a480c574dff7a13fde3 https://www.encodeproject.org/files/ENCFF900AMT/@@download/ENCFF900AMT.bam GRCh38 released s3://encode-public/2017/04/01/778b9ad2-9caf-4b89-9755-dfb406e6ef91/ENCFF900AMT.bam experiment not submitted to GEO ENCFF352UTD bigWig fold change over control ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF900AMT 844031676 Anshul Kundaje, Stanford 72945b4e5b9d66bd5f31aa52fb6c1717 https://www.encodeproject.org/files/ENCFF352UTD/@@download/ENCFF352UTD.bigWig GRCh38 released s3://encode-public/2017/04/01/da1fc720-854c-4eb9-b1f2-ed5d5dc474b6/ENCFF352UTD.bigWig experiment not submitted to GEO ENCFF068PMK bigWig signal p-value ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF900AMT 661335861 Anshul Kundaje, Stanford 24bf8a46a7dad7908927a4f95d7c400d https://www.encodeproject.org/files/ENCFF068PMK/@@download/ENCFF068PMK.bigWig GRCh38 released s3://encode-public/2017/04/01/2121a1fb-b47b-4906-9c46-fae691b34b2a/ENCFF068PMK.bigWig experiment not submitted to GEO ENCFF574WBE fastq reads ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF911ROA 5034269388 Michael Snyder, Stanford a335a6c16c11a76d5ca7a6f02fd2df32 https://www.encodeproject.org/files/ENCFF574WBE/@@download/ENCFF574WBE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/fe006647-4aee-43f3-a632-349a62f9c853/ENCFF574WBE.fastq.gz experiment not submitted to GEO ENCFF911ROA fastq reads ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF574WBE 4773156579 Michael Snyder, Stanford 4a07b3dd7fbd6b3f68376f8297e338b8 https://www.encodeproject.org/files/ENCFF911ROA/@@download/ENCFF911ROA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/2e366518-6ab5-4d88-a013-448e094cf826/ENCFF911ROA.fastq.gz experiment not submitted to GEO ENCFF692DLP bam alignments ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF574WBE, ENCFF911ROA 5712081857 Anshul Kundaje, Stanford b7fd732e150aab359eda314722692e10 https://www.encodeproject.org/files/ENCFF692DLP/@@download/ENCFF692DLP.bam GRCh38 released s3://encode-public/2016/12/22/b0f97c12-f497-4ac3-b6af-ebd9766f8dd9/ENCFF692DLP.bam experiment not submitted to GEO ENCFF325NJC bigWig fold change over control ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF692DLP 1046623946 Anshul Kundaje, Stanford b23bfb124a88c93fa7851b152d417c0c https://www.encodeproject.org/files/ENCFF325NJC/@@download/ENCFF325NJC.bigWig GRCh38 released s3://encode-public/2016/12/22/54e1824a-1c2f-4830-abdf-2938a62cf3a8/ENCFF325NJC.bigWig experiment not submitted to GEO ENCFF526RMY bigWig signal p-value ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF692DLP 669119208 Anshul Kundaje, Stanford 0b3e05aaf5a892ab0559deef87b6e35c https://www.encodeproject.org/files/ENCFF526RMY/@@download/ENCFF526RMY.bigWig GRCh38 released s3://encode-public/2016/12/22/9bf4398c-c643-4411-850a-ba26eaf828a6/ENCFF526RMY.bigWig experiment not submitted to GEO ENCFF011MBI fastq reads ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF626AST 4448005631 Michael Snyder, Stanford 7ea25feda3c741123c205a0c4611bf4b https://www.encodeproject.org/files/ENCFF011MBI/@@download/ENCFF011MBI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/8fa6d2b4-f2ab-4e5b-9049-8c2d744705a9/ENCFF011MBI.fastq.gz experiment not submitted to GEO ENCFF626AST fastq reads ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF011MBI 4689058965 Michael Snyder, Stanford a17ebc989707c4fac7be2bd554e536fc https://www.encodeproject.org/files/ENCFF626AST/@@download/ENCFF626AST.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/f803abd0-d8f2-4049-9b69-f4fe294072b9/ENCFF626AST.fastq.gz experiment not submitted to GEO ENCFF656OYT bam alignments ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF011MBI, ENCFF626AST 5887527394 Anshul Kundaje, Stanford 5745618bb3bfdbc81654ebcc925347a0 https://www.encodeproject.org/files/ENCFF656OYT/@@download/ENCFF656OYT.bam GRCh38 released s3://encode-public/2016/12/22/eb7d1fa9-100c-40ad-a40b-a079558314ec/ENCFF656OYT.bam experiment not submitted to GEO ENCFF035ICJ bigWig signal p-value ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF656OYT 1256078877 Anshul Kundaje, Stanford ec74a206dc7803575480093e9d5a1fe2 https://www.encodeproject.org/files/ENCFF035ICJ/@@download/ENCFF035ICJ.bigWig GRCh38 released s3://encode-public/2016/12/22/ad56d6c9-a372-4096-9ef8-0906f23aa405/ENCFF035ICJ.bigWig experiment not submitted to GEO ENCFF555YLI bigWig fold change over control ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF656OYT 1381401087 Anshul Kundaje, Stanford 8b39adab3e99579cf4a6a0dda9c2b6ae https://www.encodeproject.org/files/ENCFF555YLI/@@download/ENCFF555YLI.bigWig GRCh38 released s3://encode-public/2016/12/22/76d9a38f-a283-410b-9490-38868b2959d8/ENCFF555YLI.bigWig experiment not submitted to GEO ENCFF903DYC fastq reads ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 1436790922 Barbara Wold, Caltech 493cae61c9ca5f3c64fbbcffd723e21e https://www.encodeproject.org/files/ENCFF903DYC/@@download/ENCFF903DYC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/b0bd2d3a-79bb-4d80-81d0-17061203292a/ENCFF903DYC.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF330CLR fastq reads ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 1404807955 Barbara Wold, Caltech bca749709a0cba57e8f5c135dba34489 https://www.encodeproject.org/files/ENCFF330CLR/@@download/ENCFF330CLR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/2d02359f-4f7a-41f2-9ee9-9be512bce712/ENCFF330CLR.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF893GGG bigWig signal p-value ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF682RLN 288740983 Anshul Kundaje, Stanford 84e4f98ce6037b264551c4372bc43c7e https://www.encodeproject.org/files/ENCFF893GGG/@@download/ENCFF893GGG.bigWig GRCh38 released s3://encode-public/2017/05/11/dddacd83-1703-483a-811c-baa8d372328f/ENCFF893GGG.bigWig experiment not submitted to GEO unreplicated experiment ENCFF682RLN bam alignments ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF330CLR, ENCFF903DYC 1243761668 Anshul Kundaje, Stanford fc658ff83c44d4eec0b59632d9d19710 https://www.encodeproject.org/files/ENCFF682RLN/@@download/ENCFF682RLN.bam GRCh38 released s3://encode-public/2017/05/11/d99139e4-69f3-42d7-aa88-c3cbdbbf1866/ENCFF682RLN.bam experiment not submitted to GEO unreplicated experiment ENCFF326LON bigWig fold change over control ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF682RLN 301174368 Anshul Kundaje, Stanford d79c7d95de43630caa9d7a7cf5480a01 https://www.encodeproject.org/files/ENCFF326LON/@@download/ENCFF326LON.bigWig GRCh38 released s3://encode-public/2017/05/11/ccdf5a20-3e55-4ac2-9735-47bd205692cd/ENCFF326LON.bigWig experiment not submitted to GEO unreplicated experiment ENCFF034PTL fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF377GEJ 2273695445 Michael Snyder, Stanford 196df0eb35d4fe80de6b6d6b5f4fe769 https://www.encodeproject.org/files/ENCFF034PTL/@@download/ENCFF034PTL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a599758e-d9bf-4405-ad3e-8a518a63ebd3/ENCFF034PTL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF935YRP fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF583LQV 2898466732 Michael Snyder, Stanford 2bc4b5992cd57cc9695f4c268440dd5c https://www.encodeproject.org/files/ENCFF935YRP/@@download/ENCFF935YRP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6e416ebb-2530-444d-b760-12949d799f1d/ENCFF935YRP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF330JDC fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF279JTO 2709533141 Michael Snyder, Stanford 2b44663e571400ea2ce2177f5a31f6bd https://www.encodeproject.org/files/ENCFF330JDC/@@download/ENCFF330JDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/249cfd8a-4550-48ae-afb8-bfb16772bd4d/ENCFF330JDC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF265XDK fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF575ZMR 2455899238 Michael Snyder, Stanford 82d09880621656196aa13d1ca321d747 https://www.encodeproject.org/files/ENCFF265XDK/@@download/ENCFF265XDK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/89c97d37-18ee-4d0f-9e68-824d7484518f/ENCFF265XDK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF076WQW fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF679AOR 474751728 Michael Snyder, Stanford 3f1ba880c4351183191888491db0f933 https://www.encodeproject.org/files/ENCFF076WQW/@@download/ENCFF076WQW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d29e3c36-4d60-4ea0-a4d8-f5f41cfe2100/ENCFF076WQW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF573OUJ fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF840XUI 1270253966 Michael Snyder, Stanford 1cc572f2850ac7c3475bf40e07e99471 https://www.encodeproject.org/files/ENCFF573OUJ/@@download/ENCFF573OUJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/acddf8d9-4b02-42b6-bbfc-dab8461886e9/ENCFF573OUJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF951AVL fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF929UBK 1577834092 Michael Snyder, Stanford 8587c053dfc041fd70d1e74eecffcccf https://www.encodeproject.org/files/ENCFF951AVL/@@download/ENCFF951AVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f5c38c6d-2803-4567-96f6-f1b631084885/ENCFF951AVL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF840XUI fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF573OUJ 1208005514 Michael Snyder, Stanford 273578d9fc97e2e82925b4e4a444f1cf https://www.encodeproject.org/files/ENCFF840XUI/@@download/ENCFF840XUI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5eb5ac7b-0bf6-471e-ae8f-7d8e64dead87/ENCFF840XUI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF981IIF fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF860BKN 624188335 Michael Snyder, Stanford 40f41db85cabcac4bb49d9b38d1841ff https://www.encodeproject.org/files/ENCFF981IIF/@@download/ENCFF981IIF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/16b0f457-c235-4594-b385-57520d9a78b1/ENCFF981IIF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF575ZMR fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF265XDK 2251608082 Michael Snyder, Stanford 6bc04e326dfe1ac845a9f392d6cd41b0 https://www.encodeproject.org/files/ENCFF575ZMR/@@download/ENCFF575ZMR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b16d7b9b-6920-485a-8a46-bbbe722fa02b/ENCFF575ZMR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF679AOR fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF076WQW 497022051 Michael Snyder, Stanford a709f22089ed490d471877b93b773504 https://www.encodeproject.org/files/ENCFF679AOR/@@download/ENCFF679AOR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/45a508ec-0e05-4587-9633-a12e1394a466/ENCFF679AOR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF377GEJ fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF034PTL 2094404924 Michael Snyder, Stanford 8bda8eaeb08d2d8c468047b608246160 https://www.encodeproject.org/files/ENCFF377GEJ/@@download/ENCFF377GEJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a403f5fe-ed12-4332-875d-b3e4b6ea8cfb/ENCFF377GEJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF583LQV fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF935YRP 2781923460 Michael Snyder, Stanford 35980f862930b433afb9a3d4cb87cd68 https://www.encodeproject.org/files/ENCFF583LQV/@@download/ENCFF583LQV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2c1f57ac-f0e4-4fa3-a201-dac0635accd2/ENCFF583LQV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF929UBK fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF951AVL 1457341079 Michael Snyder, Stanford 5f33a67c428e75c616aabf1c5e43904b https://www.encodeproject.org/files/ENCFF929UBK/@@download/ENCFF929UBK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/78346f52-8116-47c7-94aa-3c5bf4a72548/ENCFF929UBK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF860BKN fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF981IIF 685102803 Michael Snyder, Stanford aeee6f212bc73977492660a51a77278b https://www.encodeproject.org/files/ENCFF860BKN/@@download/ENCFF860BKN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6b229343-deee-49bd-b700-43b4b662b1ac/ENCFF860BKN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF279JTO fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF330JDC 2834207478 Michael Snyder, Stanford df9696d897f851015d526174e5903086 https://www.encodeproject.org/files/ENCFF279JTO/@@download/ENCFF279JTO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/98c50cd8-c6e0-4c2c-9ae2-b35f2b9c6524/ENCFF279JTO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF764CQI bam alignments ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 ENCFF034PTL, ENCFF076WQW, ENCFF279JTO, ENCFF330JDC, ENCFF377GEJ, ENCFF583LQV, ENCFF679AOR, ENCFF860BKN, ENCFF935YRP, ENCFF981IIF 8978121538 Anshul Kundaje, Stanford 514eff5889ef06fea099c4927c5287cb https://www.encodeproject.org/files/ENCFF764CQI/@@download/ENCFF764CQI.bam GRCh38 released s3://encode-public/2017/04/01/133a1563-9cd6-4d49-853e-c88f2c03d4de/ENCFF764CQI.bam mismatched file status, experiment not submitted to GEO ENCFF468QNB bam alignments ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 ENCFF265XDK, ENCFF573OUJ, ENCFF575ZMR, ENCFF840XUI, ENCFF929UBK, ENCFF951AVL 5105968738 Anshul Kundaje, Stanford 8e9697775587a9d0fb853f0f91158976 https://www.encodeproject.org/files/ENCFF468QNB/@@download/ENCFF468QNB.bam GRCh38 released s3://encode-public/2017/04/01/5cf565bd-8bbf-43d1-bb7d-86eb7d0cb058/ENCFF468QNB.bam mismatched file status, experiment not submitted to GEO ENCFF755EQG fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF369RBA 2387994144 Michael Snyder, Stanford 14a82603f4f5ab6e0cb4f1710c744bb0 https://www.encodeproject.org/files/ENCFF755EQG/@@download/ENCFF755EQG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/038add2b-95cf-42bf-bf04-5d76cdb6c761/ENCFF755EQG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF369RBA fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF755EQG 2530964914 Michael Snyder, Stanford 537f96777c28f6ac908d2c6ce4da9323 https://www.encodeproject.org/files/ENCFF369RBA/@@download/ENCFF369RBA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f132b235-5886-4cb6-84c9-8ffbaa24739b/ENCFF369RBA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF187KNA fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF366NKD 1858809476 Michael Snyder, Stanford ce4d396664155156aac30fbf21407d94 https://www.encodeproject.org/files/ENCFF187KNA/@@download/ENCFF187KNA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b4c78c8a-8118-4e14-a7b7-be53b26da3a9/ENCFF187KNA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF779OLZ fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF049CDO 524844748 Michael Snyder, Stanford 105d7d8493b406d3bd933acbde89385c https://www.encodeproject.org/files/ENCFF779OLZ/@@download/ENCFF779OLZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/844a4268-c0e5-40f4-aa43-3a1fb2456a81/ENCFF779OLZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF717TCR fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF649INK 701318901 Michael Snyder, Stanford 3ac2c2957ba7b91b4bb4755a7da96550 https://www.encodeproject.org/files/ENCFF717TCR/@@download/ENCFF717TCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d2b88b19-c85d-4355-8e73-f6e4f0151ef3/ENCFF717TCR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF806ING fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF860NIO 1873679691 Michael Snyder, Stanford d90c037085bec2c31c04fa69ba9ad5e5 https://www.encodeproject.org/files/ENCFF806ING/@@download/ENCFF806ING.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0b37b6b7-59cf-44fe-8f1a-b9b9d5efeb53/ENCFF806ING.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF049CDO fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF779OLZ 480151444 Michael Snyder, Stanford fa1b7975f0dcb8bb24a3ee63664d3c68 https://www.encodeproject.org/files/ENCFF049CDO/@@download/ENCFF049CDO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c4aa1976-1212-4716-8bbf-bdb8c51bf6c6/ENCFF049CDO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF332XHE fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF285LLW 1971018720 Michael Snyder, Stanford a66e2beccb6d0a56dfd37b9553e0a478 https://www.encodeproject.org/files/ENCFF332XHE/@@download/ENCFF332XHE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bff7d004-8336-42a5-97a5-abcc362d2574/ENCFF332XHE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF285LLW fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF332XHE 2054440353 Michael Snyder, Stanford 177ecb15d6ac7eaf82ac4c40593679e5 https://www.encodeproject.org/files/ENCFF285LLW/@@download/ENCFF285LLW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/14fe0e4a-ec60-4849-8c02-dfab0b7e9a1f/ENCFF285LLW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF860NIO fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF806ING 1782236963 Michael Snyder, Stanford 8f7a7a3a0832be22f41bf03ffc9dd232 https://www.encodeproject.org/files/ENCFF860NIO/@@download/ENCFF860NIO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bc0d0df3-0035-48bf-b4f4-2ef8f36b1b8f/ENCFF860NIO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF649INK fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF717TCR 636411784 Michael Snyder, Stanford f47c42d9c6889d7720574cafe94f8a9b https://www.encodeproject.org/files/ENCFF649INK/@@download/ENCFF649INK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ff1b28a4-9814-4ab7-8465-a9ab4e453f10/ENCFF649INK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF034CVJ fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF628GSL 2121276081 Michael Snyder, Stanford 4dd4ca4c85ab41abe5bd4b704114b9d4 https://www.encodeproject.org/files/ENCFF034CVJ/@@download/ENCFF034CVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/12f66969-6536-4d23-b196-98d7c784331b/ENCFF034CVJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF366NKD fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF187KNA 1787855549 Michael Snyder, Stanford 9ec93818fa060f017405f9dfd22332a3 https://www.encodeproject.org/files/ENCFF366NKD/@@download/ENCFF366NKD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7f3c4c60-64e0-46a9-bc5a-861b9f47c5d7/ENCFF366NKD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF994ULH fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF113PKL 1964109318 Michael Snyder, Stanford d5c0f11932cd3201b61ea8369593160b https://www.encodeproject.org/files/ENCFF994ULH/@@download/ENCFF994ULH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e3b3f4c2-40e8-44e4-92a2-722e1052b30c/ENCFF994ULH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF452ZYB fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF594GXY 2019814549 Michael Snyder, Stanford 7ad08e18eef44a2a18223dd20e58c08d https://www.encodeproject.org/files/ENCFF452ZYB/@@download/ENCFF452ZYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/072440c2-d30f-4cb6-ba06-7e3238c19700/ENCFF452ZYB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF628GSL fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF034CVJ 2249596130 Michael Snyder, Stanford 3e1234191874a1b06abf96e395b7242a https://www.encodeproject.org/files/ENCFF628GSL/@@download/ENCFF628GSL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9bc9e7b1-6502-4192-b2aa-779a92b40780/ENCFF628GSL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF556NKW fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF036AEW 2265688714 Michael Snyder, Stanford 0a84f22760541ebd8a387497296c8e4f https://www.encodeproject.org/files/ENCFF556NKW/@@download/ENCFF556NKW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/aac11078-3803-4fbf-b0af-ba06f3519aad/ENCFF556NKW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF036AEW fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF556NKW 2181704161 Michael Snyder, Stanford 37271f6f4a3a57584434e677cb68bbca https://www.encodeproject.org/files/ENCFF036AEW/@@download/ENCFF036AEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a7a3bcaf-c9fc-4cd9-b8e9-52f9df303294/ENCFF036AEW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF113PKL fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF994ULH 1805903794 Michael Snyder, Stanford da9a13d4c6d076556db41673cd2a07db https://www.encodeproject.org/files/ENCFF113PKL/@@download/ENCFF113PKL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/80975bac-0cb8-4a25-b68e-9ff17ab510bf/ENCFF113PKL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF594GXY fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF452ZYB 1833366942 Michael Snyder, Stanford d840ce5963563e710a510d294446cdaa https://www.encodeproject.org/files/ENCFF594GXY/@@download/ENCFF594GXY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/76bf5644-ba7b-41ba-ad51-4b24c2b0e227/ENCFF594GXY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF372HEU bam alignments ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 ENCFF034CVJ, ENCFF036AEW, ENCFF187KNA, ENCFF366NKD, ENCFF369RBA, ENCFF556NKW, ENCFF628GSL, ENCFF755EQG 5630561670 Anshul Kundaje, Stanford 45ad4f64967355285cdc1126d503a8bf https://www.encodeproject.org/files/ENCFF372HEU/@@download/ENCFF372HEU.bam GRCh38 released s3://encode-public/2017/04/01/4686eddb-bfef-420c-8870-20a1e02d5a0b/ENCFF372HEU.bam mismatched file status, experiment not submitted to GEO ENCFF739KYO bam alignments ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 ENCFF049CDO, ENCFF113PKL, ENCFF285LLW, ENCFF332XHE, ENCFF452ZYB, ENCFF594GXY, ENCFF649INK, ENCFF717TCR, ENCFF779OLZ, ENCFF806ING, ENCFF860NIO, ENCFF994ULH 7058108554 Anshul Kundaje, Stanford eb43e8635a6a3be8f5b4ea02a9993983 https://www.encodeproject.org/files/ENCFF739KYO/@@download/ENCFF739KYO.bam GRCh38 released s3://encode-public/2017/04/01/036d4162-f25a-412e-91dc-24898c0d16ad/ENCFF739KYO.bam mismatched file status, experiment not submitted to GEO ENCFF553SEZ fastq reads ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF493REK 4515715649 Michael Snyder, Stanford 994472d2391c632f844d25c3d53a07a2 https://www.encodeproject.org/files/ENCFF553SEZ/@@download/ENCFF553SEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/bf8e242a-c2cf-461a-933b-7e79af275b93/ENCFF553SEZ.fastq.gz experiment not submitted to GEO ENCFF493REK fastq reads ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF553SEZ 4873502529 Michael Snyder, Stanford a9d199c8e48483068c4492700c38efed https://www.encodeproject.org/files/ENCFF493REK/@@download/ENCFF493REK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b10dffc1-69ea-4a24-8757-46bd63ece4b3/ENCFF493REK.fastq.gz experiment not submitted to GEO ENCFF293BRN bam alignments ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF493REK, ENCFF553SEZ 6487854280 Anshul Kundaje, Stanford 9b9a096a6b2d848489645e596e31021b https://www.encodeproject.org/files/ENCFF293BRN/@@download/ENCFF293BRN.bam GRCh38 released s3://encode-public/2016/12/22/f58103f6-0847-4a3a-a2a6-9e7f7e857051/ENCFF293BRN.bam experiment not submitted to GEO ENCFF734RVU bigWig signal p-value ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF293BRN 1457330627 Anshul Kundaje, Stanford 4db273979ea7daff192b8a275eb06e2c https://www.encodeproject.org/files/ENCFF734RVU/@@download/ENCFF734RVU.bigWig GRCh38 released s3://encode-public/2016/12/22/c77aab6c-4ff9-4ff0-a58c-a54501a0773f/ENCFF734RVU.bigWig experiment not submitted to GEO ENCFF152NUP bigWig fold change over control ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF293BRN 1549011598 Anshul Kundaje, Stanford 6a1eaa3ccecdce280a2b7d617afac985 https://www.encodeproject.org/files/ENCFF152NUP/@@download/ENCFF152NUP.bigWig GRCh38 released s3://encode-public/2016/12/22/dd766d9e-dd13-4003-9ffb-a313272f63d1/ENCFF152NUP.bigWig experiment not submitted to GEO ENCFF210QPG fastq reads ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF180RBC 5124724762 Michael Snyder, Stanford f1d34cd9f19e9a033fc71c792761d002 https://www.encodeproject.org/files/ENCFF210QPG/@@download/ENCFF210QPG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b50a0ebf-43e2-40d3-b1b5-25e9deeac973/ENCFF210QPG.fastq.gz experiment not submitted to GEO ENCFF180RBC fastq reads ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF210QPG 5430245431 Michael Snyder, Stanford 2f9f4936471e629158c5fd35c451f729 https://www.encodeproject.org/files/ENCFF180RBC/@@download/ENCFF180RBC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/38c0c88b-567e-49f2-9ab6-d9bff3271efb/ENCFF180RBC.fastq.gz experiment not submitted to GEO ENCFF585YAB bam alignments ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF180RBC, ENCFF210QPG 6813331422 Anshul Kundaje, Stanford 5eaaf3c1eb2d8da8ad31c1e808cb59f4 https://www.encodeproject.org/files/ENCFF585YAB/@@download/ENCFF585YAB.bam GRCh38 released s3://encode-public/2016/12/22/74c852a4-d609-494e-9213-5a5607c21529/ENCFF585YAB.bam experiment not submitted to GEO ENCFF437NPA bigWig signal p-value ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF585YAB 1391307604 Anshul Kundaje, Stanford 5e745b143621c6776dacaf0452c035c5 https://www.encodeproject.org/files/ENCFF437NPA/@@download/ENCFF437NPA.bigWig GRCh38 released s3://encode-public/2016/12/22/256014fb-6ca0-44bf-a402-491d866438f5/ENCFF437NPA.bigWig experiment not submitted to GEO ENCFF353GGX bigWig fold change over control ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF585YAB 1715879179 Anshul Kundaje, Stanford 6733274cf3d6052011d267c71cf4d729 https://www.encodeproject.org/files/ENCFF353GGX/@@download/ENCFF353GGX.bigWig GRCh38 released s3://encode-public/2016/12/22/3d30e600-ce9d-4769-be78-5a6e6d7b729c/ENCFF353GGX.bigWig experiment not submitted to GEO ENCFF968KAQ fastq reads ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF797AHS 2617513035 Michael Snyder, Stanford b7881e069392108551a73bdc0669b057 https://www.encodeproject.org/files/ENCFF968KAQ/@@download/ENCFF968KAQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/1effa953-01c1-49ba-b04f-468d94121d05/ENCFF968KAQ.fastq.gz experiment not submitted to GEO ENCFF797AHS fastq reads ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF968KAQ 2840981805 Michael Snyder, Stanford 1316e5d43bf6cd0be97b2123b63259ce https://www.encodeproject.org/files/ENCFF797AHS/@@download/ENCFF797AHS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/efdeb10c-c7dd-43d2-a71c-e14a0c74c82e/ENCFF797AHS.fastq.gz experiment not submitted to GEO ENCFF086TID bam alignments ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF797AHS, ENCFF968KAQ 3940472213 Anshul Kundaje, Stanford a08a558c0c3069b6f59a5a90cd30118f https://www.encodeproject.org/files/ENCFF086TID/@@download/ENCFF086TID.bam GRCh38 released s3://encode-public/2017/02/08/abec7203-253a-42aa-9cc9-b8367719b2de/ENCFF086TID.bam experiment not submitted to GEO ENCFF110ZCZ bigWig signal p-value ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF086TID 604508186 Anshul Kundaje, Stanford 20d7cc6187615404a1955b162b0922ea https://www.encodeproject.org/files/ENCFF110ZCZ/@@download/ENCFF110ZCZ.bigWig GRCh38 released s3://encode-public/2017/02/08/a313d54b-36a6-48de-9a7c-2d7887ded054/ENCFF110ZCZ.bigWig experiment not submitted to GEO ENCFF069UEK bigWig fold change over control ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF086TID 907667634 Anshul Kundaje, Stanford e008a74f2b29a73d442a2a305baff79e https://www.encodeproject.org/files/ENCFF069UEK/@@download/ENCFF069UEK.bigWig GRCh38 released s3://encode-public/2017/02/08/6eca9490-d50d-4470-9d78-44849881e68b/ENCFF069UEK.bigWig experiment not submitted to GEO ENCFF138HKP fastq reads ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF565VHZ 5678959108 Michael Snyder, Stanford 487fa54ae6bf19e5251b363d73dec54c https://www.encodeproject.org/files/ENCFF138HKP/@@download/ENCFF138HKP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/0af4466d-5f85-42dc-a686-dfa250baf5a1/ENCFF138HKP.fastq.gz experiment not submitted to GEO ENCFF565VHZ fastq reads ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF138HKP 5557180504 Michael Snyder, Stanford 3eb3d5424ed9397857bb37d0fc2bf8a1 https://www.encodeproject.org/files/ENCFF565VHZ/@@download/ENCFF565VHZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/3ddbc587-8f6d-469d-bd37-4611e0cbd0c4/ENCFF565VHZ.fastq.gz experiment not submitted to GEO ENCFF708JOG bigWig signal p-value ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482HAC 1563955436 Anshul Kundaje, Stanford 9238466c441d636e0916d6a7eddbc7f2 https://www.encodeproject.org/files/ENCFF708JOG/@@download/ENCFF708JOG.bigWig GRCh38 released s3://encode-public/2016/12/22/06d1ae70-d3b2-4d6a-ba25-6a6b6dce7be7/ENCFF708JOG.bigWig experiment not submitted to GEO ENCFF482HAC bam alignments ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF138HKP, ENCFF565VHZ 6914098757 Anshul Kundaje, Stanford d4f7475b0ad3a206602bd9604c21c778 https://www.encodeproject.org/files/ENCFF482HAC/@@download/ENCFF482HAC.bam GRCh38 released s3://encode-public/2016/12/22/4fbfffed-e79f-4583-b165-120fd0b8152f/ENCFF482HAC.bam experiment not submitted to GEO ENCFF598ODG bigWig fold change over control ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482HAC 1646633659 Anshul Kundaje, Stanford cfc503c5acd206cfacf06d6933b6a826 https://www.encodeproject.org/files/ENCFF598ODG/@@download/ENCFF598ODG.bigWig GRCh38 released s3://encode-public/2016/12/22/cbcb99ea-2019-447c-8017-6bef74bc3d78/ENCFF598ODG.bigWig experiment not submitted to GEO ENCFF103VYG fastq reads ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF439TXE 4795109160 Michael Snyder, Stanford 6483d276347b730ae18f8806c3901c1c https://www.encodeproject.org/files/ENCFF103VYG/@@download/ENCFF103VYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/fba58ae9-83cd-4e9e-8328-410bb87b1496/ENCFF103VYG.fastq.gz experiment not submitted to GEO ENCFF439TXE fastq reads ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF103VYG 4587607494 Michael Snyder, Stanford a808b7ab0d28215dac73b075598dcdd9 https://www.encodeproject.org/files/ENCFF439TXE/@@download/ENCFF439TXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/cddd85e5-d379-424b-ac9e-ed85a9e62bd5/ENCFF439TXE.fastq.gz experiment not submitted to GEO ENCFF733PNQ bam alignments ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF103VYG, ENCFF439TXE 5766360467 Anshul Kundaje, Stanford 4c4db06b6e26968b49d0d45578ea8124 https://www.encodeproject.org/files/ENCFF733PNQ/@@download/ENCFF733PNQ.bam GRCh38 released s3://encode-public/2016/12/22/29764939-58cd-44e0-81b3-e3299aa8a0a5/ENCFF733PNQ.bam experiment not submitted to GEO ENCFF655HXL bigWig fold change over control ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF733PNQ 1349164476 Anshul Kundaje, Stanford 332e61a95f5cbf50b953cf620dcbfa18 https://www.encodeproject.org/files/ENCFF655HXL/@@download/ENCFF655HXL.bigWig GRCh38 released s3://encode-public/2016/12/22/7f81c0c0-b552-41b0-ab5f-f8fb6566d4d1/ENCFF655HXL.bigWig experiment not submitted to GEO ENCFF180NBT bigWig signal p-value ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF733PNQ 1327655481 Anshul Kundaje, Stanford 2ed32738441e60c8d09988dcea0d2e86 https://www.encodeproject.org/files/ENCFF180NBT/@@download/ENCFF180NBT.bigWig GRCh38 released s3://encode-public/2016/12/22/fc59bfd5-9c90-462a-86b2-029b72ce7141/ENCFF180NBT.bigWig experiment not submitted to GEO ENCFF566LXM fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF141NYG 1254016092 Michael Snyder, Stanford bc1860343b52ceaa4696d7e01bfa0195 https://www.encodeproject.org/files/ENCFF566LXM/@@download/ENCFF566LXM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/01a852f0-ebe2-4fd4-a10e-51ed6c8c16d0/ENCFF566LXM.fastq.gz experiment not submitted to GEO ENCFF038BYR fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 2 100 paired-ended 2 ENCFF721JZG 1038509959 Michael Snyder, Stanford 0a29a4a3dd9d3426ef137507ec79039b https://www.encodeproject.org/files/ENCFF038BYR/@@download/ENCFF038BYR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/eea93514-8e0d-4bc1-afbf-1ad28afaac79/ENCFF038BYR.fastq.gz experiment not submitted to GEO ENCFF141NYG fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF566LXM 1251436012 Michael Snyder, Stanford 4f6ead7460ed803aac29759b1adef913 https://www.encodeproject.org/files/ENCFF141NYG/@@download/ENCFF141NYG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/0bde71de-503f-4938-abff-2d930d6247d8/ENCFF141NYG.fastq.gz experiment not submitted to GEO ENCFF721JZG fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 2 100 paired-ended 1 ENCFF038BYR 1033839617 Michael Snyder, Stanford 7b92a5d02fba5d8be875ef1590b4237e https://www.encodeproject.org/files/ENCFF721JZG/@@download/ENCFF721JZG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/fe5ddc61-319f-4f24-acfe-657bdd8dec7a/ENCFF721JZG.fastq.gz experiment not submitted to GEO ENCFF984OPE bam alignments ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF038BYR, ENCFF141NYG, ENCFF566LXM, ENCFF721JZG 3267460870 Anshul Kundaje, Stanford 064654c02f01536ef980f1752007d9a6 https://www.encodeproject.org/files/ENCFF984OPE/@@download/ENCFF984OPE.bam GRCh38 released s3://encode-public/2017/04/01/e3bec162-4b03-4f27-9352-ce0e61acf62f/ENCFF984OPE.bam experiment not submitted to GEO ENCFF507OEP bigWig signal p-value ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF984OPE 510013523 Anshul Kundaje, Stanford fe20cc67f0ffc5451f040d08017d9848 https://www.encodeproject.org/files/ENCFF507OEP/@@download/ENCFF507OEP.bigWig GRCh38 released s3://encode-public/2017/04/01/deb4612e-2546-4509-870a-885b24ca8b9e/ENCFF507OEP.bigWig experiment not submitted to GEO ENCFF611PRW bigWig fold change over control ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF984OPE 553877481 Anshul Kundaje, Stanford b943f205a80f91b498ee192360ede145 https://www.encodeproject.org/files/ENCFF611PRW/@@download/ENCFF611PRW.bigWig GRCh38 released s3://encode-public/2017/04/01/ad0038b3-c8a7-4fd7-9be4-36f72a9628eb/ENCFF611PRW.bigWig experiment not submitted to GEO ENCFF215GFE fastq reads ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF987RZW 5782460539 Michael Snyder, Stanford 26d620e45b93ee945809d4a1be217cd5 https://www.encodeproject.org/files/ENCFF215GFE/@@download/ENCFF215GFE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b025aad8-725f-4257-9a8f-2751ac0152bb/ENCFF215GFE.fastq.gz experiment not submitted to GEO ENCFF987RZW fastq reads ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF215GFE 5465350440 Michael Snyder, Stanford 6dc1fc22c31744f40d2a9c5bfec06395 https://www.encodeproject.org/files/ENCFF987RZW/@@download/ENCFF987RZW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/06aa9cd0-d251-47b7-a6d3-b055539fb47c/ENCFF987RZW.fastq.gz experiment not submitted to GEO ENCFF159RKV bam alignments ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF215GFE, ENCFF987RZW 6935837559 Anshul Kundaje, Stanford e6ab7cca33cbd59eef2d9b9a090f5dcf https://www.encodeproject.org/files/ENCFF159RKV/@@download/ENCFF159RKV.bam GRCh38 released s3://encode-public/2016/12/22/4d1c5a06-1573-490a-a6e7-fe1521777620/ENCFF159RKV.bam experiment not submitted to GEO ENCFF502JSR bigWig signal p-value ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF159RKV 1037272929 Anshul Kundaje, Stanford 23aeeebe1e30c812c16cce8199badaef https://www.encodeproject.org/files/ENCFF502JSR/@@download/ENCFF502JSR.bigWig GRCh38 released s3://encode-public/2016/12/22/33fbde1a-e1a5-4e48-9c9e-247372e52043/ENCFF502JSR.bigWig experiment not submitted to GEO ENCFF528OME bigWig fold change over control ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF159RKV 1550335985 Anshul Kundaje, Stanford 7adec5865208c3757aeb856d0d4c8966 https://www.encodeproject.org/files/ENCFF528OME/@@download/ENCFF528OME.bigWig GRCh38 released s3://encode-public/2016/12/22/f46c9ece-2120-4476-ac48-ee04ef438d9d/ENCFF528OME.bigWig experiment not submitted to GEO ENCFF216RFR fastq reads ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF488ELU 4895250873 Michael Snyder, Stanford e027bfddd9c13a87c36c48d6ca8f556b https://www.encodeproject.org/files/ENCFF216RFR/@@download/ENCFF216RFR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/54f03323-36a6-4a1c-aecb-43f31b179d32/ENCFF216RFR.fastq.gz experiment not submitted to GEO ENCFF488ELU fastq reads ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF216RFR 4542212323 Michael Snyder, Stanford 9cdb3f9a7ff53dd2db70550fa56ce6af https://www.encodeproject.org/files/ENCFF488ELU/@@download/ENCFF488ELU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/6aa29458-2ff8-43a0-aba4-21cd63217323/ENCFF488ELU.fastq.gz experiment not submitted to GEO ENCFF482CAN bam alignments ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF216RFR, ENCFF488ELU 6275955197 Anshul Kundaje, Stanford f885b096c54dc1075731a4d55c082404 https://www.encodeproject.org/files/ENCFF482CAN/@@download/ENCFF482CAN.bam GRCh38 released s3://encode-public/2016/12/22/90a4fc31-9f45-47be-afad-cb6369435154/ENCFF482CAN.bam experiment not submitted to GEO ENCFF513DQW bigWig signal p-value ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482CAN 1251226941 Anshul Kundaje, Stanford af9afbb2b1efece9c0be3359bb161bfc https://www.encodeproject.org/files/ENCFF513DQW/@@download/ENCFF513DQW.bigWig GRCh38 released s3://encode-public/2016/12/22/5676d124-9034-4c0f-acad-d73d7099cbf6/ENCFF513DQW.bigWig experiment not submitted to GEO ENCFF056HIV bigWig fold change over control ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482CAN 1378077501 Anshul Kundaje, Stanford d3a1fb6519816b8dfe5d337d9fc132cb https://www.encodeproject.org/files/ENCFF056HIV/@@download/ENCFF056HIV.bigWig GRCh38 released s3://encode-public/2016/12/22/167f95da-f893-4e95-8510-9463e4a93535/ENCFF056HIV.bigWig experiment not submitted to GEO ENCFF310FXX fastq reads ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF420VKK 2803874924 Michael Snyder, Stanford f927d0332ff9b5df185d7511c0987644 https://www.encodeproject.org/files/ENCFF310FXX/@@download/ENCFF310FXX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/017ffc63-a6b0-456d-801b-f505ba1688b9/ENCFF310FXX.fastq.gz experiment not submitted to GEO ENCFF420VKK fastq reads ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF310FXX 3142394987 Michael Snyder, Stanford cf5056ae35f6e9c9c8b2ecdd853596dd https://www.encodeproject.org/files/ENCFF420VKK/@@download/ENCFF420VKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/f5162bff-d0ce-457d-912b-eb8757551201/ENCFF420VKK.fastq.gz experiment not submitted to GEO ENCFF277DNH bam alignments ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF310FXX, ENCFF420VKK 3508048403 Anshul Kundaje, Stanford a2fe3e44d6625412b6cd94c7e7510844 https://www.encodeproject.org/files/ENCFF277DNH/@@download/ENCFF277DNH.bam GRCh38 released s3://encode-public/2017/04/01/40683d40-b345-46e6-b529-2173aa4583bf/ENCFF277DNH.bam experiment not submitted to GEO ENCFF685LTS bigWig signal p-value ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF277DNH 727469476 Anshul Kundaje, Stanford a9fc549220386e55be6125516b9c743c https://www.encodeproject.org/files/ENCFF685LTS/@@download/ENCFF685LTS.bigWig GRCh38 released s3://encode-public/2017/04/01/51dcb959-0aa8-4afc-9a19-c8419a09cf18/ENCFF685LTS.bigWig experiment not submitted to GEO ENCFF233YYJ bigWig fold change over control ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF277DNH 844022497 Anshul Kundaje, Stanford c547598fade459231099e29bb3f236c7 https://www.encodeproject.org/files/ENCFF233YYJ/@@download/ENCFF233YYJ.bigWig GRCh38 released s3://encode-public/2017/04/01/907d6e44-0093-4ce8-b8f0-ea3e57782498/ENCFF233YYJ.bigWig experiment not submitted to GEO ENCFF059UER fastq reads ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF261YIK 2643964202 Michael Snyder, Stanford 4ad4cc312fbd523353a37dcf0d68ba9e https://www.encodeproject.org/files/ENCFF059UER/@@download/ENCFF059UER.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/17e8206f-75c5-4433-8735-d9fc2bfeb2cd/ENCFF059UER.fastq.gz experiment not submitted to GEO ENCFF261YIK fastq reads ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF059UER 3008654595 Michael Snyder, Stanford 9bbd97cfc96f11cd525b00e591677daf https://www.encodeproject.org/files/ENCFF261YIK/@@download/ENCFF261YIK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/3069c448-ff21-4f92-815d-f6b9edddd091/ENCFF261YIK.fastq.gz experiment not submitted to GEO ENCFF105ASY bam alignments ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF059UER, ENCFF261YIK 3255883977 Anshul Kundaje, Stanford 71610738292d29312a39379829d8ccff https://www.encodeproject.org/files/ENCFF105ASY/@@download/ENCFF105ASY.bam GRCh38 released s3://encode-public/2016/12/22/a8105730-9864-435a-94ad-8515497e5b3d/ENCFF105ASY.bam experiment not submitted to GEO ENCFF247KWO bigWig fold change over control ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF105ASY 785387619 Anshul Kundaje, Stanford 05c74d1c2673e6f4ea7efe2d599bf805 https://www.encodeproject.org/files/ENCFF247KWO/@@download/ENCFF247KWO.bigWig GRCh38 released s3://encode-public/2016/12/22/ba2cf04e-e383-4e53-8a1b-f1c2d86ca7ee/ENCFF247KWO.bigWig experiment not submitted to GEO ENCFF983MMK bigWig signal p-value ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF105ASY 805120079 Anshul Kundaje, Stanford f46b75dfceab223bcf4cbb9069a55dfe https://www.encodeproject.org/files/ENCFF983MMK/@@download/ENCFF983MMK.bigWig GRCh38 released s3://encode-public/2016/12/22/60559d48-6813-41c6-b68e-70e19c1251ee/ENCFF983MMK.bigWig experiment not submitted to GEO ENCFF513OIA fastq reads ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF579WLS 2600898558 Michael Snyder, Stanford 30c27e257dd39fc8b2a9c3f008401181 https://www.encodeproject.org/files/ENCFF513OIA/@@download/ENCFF513OIA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/aae354c5-87b4-49ce-a511-79503b768640/ENCFF513OIA.fastq.gz experiment not submitted to GEO ENCFF579WLS fastq reads ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF513OIA 2282380806 Michael Snyder, Stanford 8d5669a480f51f5fa5afe262bbe07fc9 https://www.encodeproject.org/files/ENCFF579WLS/@@download/ENCFF579WLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/be3ff425-0384-49f4-bdb9-091d0035f34e/ENCFF579WLS.fastq.gz experiment not submitted to GEO ENCFF961DZL bigWig signal p-value ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF608BWH 441266896 Anshul Kundaje, Stanford 00ace193aa72622e1e49e306ecf41e73 https://www.encodeproject.org/files/ENCFF961DZL/@@download/ENCFF961DZL.bigWig GRCh38 released s3://encode-public/2016/12/22/5a494572-b8f3-4906-bb7f-3524ecf680d7/ENCFF961DZL.bigWig experiment not submitted to GEO ENCFF608BWH bam alignments ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF513OIA, ENCFF579WLS 2526382808 Anshul Kundaje, Stanford 070ea04028bdbbc45dc9668b0670d324 https://www.encodeproject.org/files/ENCFF608BWH/@@download/ENCFF608BWH.bam GRCh38 released s3://encode-public/2016/12/22/94a12449-ac93-467b-817b-428f45c7193b/ENCFF608BWH.bam experiment not submitted to GEO ENCFF879PJS bigWig fold change over control ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF608BWH 532861279 Anshul Kundaje, Stanford 349ff4df31226ff9c05fc342dc06bf0b https://www.encodeproject.org/files/ENCFF879PJS/@@download/ENCFF879PJS.bigWig GRCh38 released s3://encode-public/2016/12/22/d5d9669c-54fa-43ae-9234-03bcb4a36880/ENCFF879PJS.bigWig experiment not submitted to GEO ENCFF214ASZ bam alignments ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF419RSJ, ENCFF420ZSO, GRCh38_no_alt_analysis_set_GCA_000001405.15 1183539727 Tim Reddy, Duke c8edde3650aa60236976d1cfce6212ef https://www.encodeproject.org/files/ENCFF214ASZ/@@download/ENCFF214ASZ.bam GRCh38 released s3://encode-public/2018/03/28/84b8a82d-4e89-42c0-ad9d-93007b726f73/ENCFF214ASZ.bam ENCFF210BHM bam alignments ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF358LJV, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1195933190 Tim Reddy, Duke a9ee05a1a0b6e2edb478826a30cbc01b https://www.encodeproject.org/files/ENCFF210BHM/@@download/ENCFF210BHM.bam GRCh38 released s3://encode-public/2018/03/28/53c8e456-9923-45ed-b9e8-166f2814e8ca/ENCFF210BHM.bam ENCFF307NLG bed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF210BHM 2327333 Tim Reddy, Duke d7b60f39fc175af6b4377dd87af74b06 https://www.encodeproject.org/files/ENCFF307NLG/@@download/ENCFF307NLG.bed.gz GRCh38 released s3://encode-public/2018/03/28/cd864562-9d99-461e-863f-5ab74e50229e/ENCFF307NLG.bed.gz ENCFF995SZM bigBed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF307NLG 5124407 Tim Reddy, Duke 2a65eef79456d2d530309871a1e7695b https://www.encodeproject.org/files/ENCFF995SZM/@@download/ENCFF995SZM.bigBed GRCh38 released s3://encode-public/2018/03/28/e3f12847-f996-4207-b84c-e302886ec1ed/ENCFF995SZM.bigBed ENCFF590QJA bam alignments ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF419RSJ, ENCFF834KFX, GRCh38_no_alt_analysis_set_GCA_000001405.15 1124547652 Tim Reddy, Duke c34e324c47d5f3b9fcf9fb0211dcd6d1 https://www.encodeproject.org/files/ENCFF590QJA/@@download/ENCFF590QJA.bam GRCh38 released s3://encode-public/2018/03/28/5e16198b-208c-4d5b-9a8e-285b420ab39d/ENCFF590QJA.bam ENCFF301UHA bed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF590QJA 2445509 Tim Reddy, Duke f0f95ab2bda7edcf51bc865376b0aad3 https://www.encodeproject.org/files/ENCFF301UHA/@@download/ENCFF301UHA.bed.gz GRCh38 released s3://encode-public/2018/03/28/0ba2c595-e345-4bd3-a71d-53f5ed55c1bd/ENCFF301UHA.bed.gz ENCFF723BGR bed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF214ASZ 1473817 Tim Reddy, Duke 0d9834f8bdb64b9ac5737e7090fce80c https://www.encodeproject.org/files/ENCFF723BGR/@@download/ENCFF723BGR.bed.gz GRCh38 released s3://encode-public/2018/03/28/f3dd574b-3bd4-4a90-9121-77847a72b67c/ENCFF723BGR.bed.gz ENCFF517MNM bigBed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF723BGR 3473577 Tim Reddy, Duke 5ff8e45a55ba62b634d81350c7d2320f https://www.encodeproject.org/files/ENCFF517MNM/@@download/ENCFF517MNM.bigBed GRCh38 released s3://encode-public/2018/03/28/dcfea236-123e-4de2-ba7e-8203ba3e53da/ENCFF517MNM.bigBed ENCFF935RQC bigBed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF301UHA 5413312 Tim Reddy, Duke f1973a2657bb11fbbf177cac1ce0087c https://www.encodeproject.org/files/ENCFF935RQC/@@download/ENCFF935RQC.bigBed GRCh38 released s3://encode-public/2018/03/28/26551b9f-2ddf-450f-837a-9d00fdd2c771/ENCFF935RQC.bigBed ENCFF834KFX fastq reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 2595475193 Tim Reddy, Duke fad3934af4c0a4995f447e2b4519a465 SRA:SRR7140578 https://www.encodeproject.org/files/ENCFF834KFX/@@download/ENCFF834KFX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/14f1205b-5793-4a8d-b21b-10c4185d81c7/ENCFF834KFX.fastq.gz ENCFF441ACT bigWig signal of unique reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF214ASZ 289759444 Tim Reddy, Duke 8328ccd35e5ddd8a675caa10a4a4a502 https://www.encodeproject.org/files/ENCFF441ACT/@@download/ENCFF441ACT.bigWig GRCh38 released s3://encode-public/2018/03/28/c04045c0-5196-49d1-8496-59bcbaf00b67/ENCFF441ACT.bigWig ENCFF420ZSO fastq reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2010229885 Tim Reddy, Duke b1da3c71ba78ddd5526f05bb9c030127 SRA:SRR7140577 https://www.encodeproject.org/files/ENCFF420ZSO/@@download/ENCFF420ZSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/b3f26b9e-5e3b-4106-b03d-4585af980cca/ENCFF420ZSO.fastq.gz ENCFF144WKW bigWig signal of unique reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF210BHM 290306136 Tim Reddy, Duke 226d2b0443ff01b105c0c37878536ab7 https://www.encodeproject.org/files/ENCFF144WKW/@@download/ENCFF144WKW.bigWig GRCh38 released s3://encode-public/2018/03/28/13c30db8-2d35-44a0-ab49-0352a19fcdfa/ENCFF144WKW.bigWig ENCFF358LJV fastq reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 1995384607 Tim Reddy, Duke 3abc9a9c8277d85e85287396e94b91e9 SRA:SRR7140579 https://www.encodeproject.org/files/ENCFF358LJV/@@download/ENCFF358LJV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/c51d7b66-0164-46e5-8d32-9db7324a25e7/ENCFF358LJV.fastq.gz ENCFF708JWC bigWig signal of unique reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF590QJA 284332567 Tim Reddy, Duke 56ae1b62f4ae42897b5a201d866ede59 https://www.encodeproject.org/files/ENCFF708JWC/@@download/ENCFF708JWC.bigWig GRCh38 released s3://encode-public/2018/03/28/0f1fc32e-a9a2-4493-bad1-1bcc02884da3/ENCFF708JWC.bigWig ENCFF597SLV bam alignments ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF793VAW, GRCh38_no_alt_analysis_set_GCA_000001405.15 1131793941 Tim Reddy, Duke 6101f9543f5f6d654a444f88c5c582d5 https://www.encodeproject.org/files/ENCFF597SLV/@@download/ENCFF597SLV.bam GRCh38 released s3://encode-public/2018/03/28/80fe92f4-59de-456d-a9b8-6e6f54a08831/ENCFF597SLV.bam ENCFF248HDS bam alignments ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF224EAV, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1031953181 Tim Reddy, Duke 140ca65927ee29aed79249e261ab3253 https://www.encodeproject.org/files/ENCFF248HDS/@@download/ENCFF248HDS.bam GRCh38 released s3://encode-public/2018/03/28/49343a07-6753-4b4c-bfe0-481cbf293b79/ENCFF248HDS.bam ENCFF978DQZ bam alignments ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF022FVS, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1019837909 Tim Reddy, Duke 99166845972fa74c9230ab6930578918 https://www.encodeproject.org/files/ENCFF978DQZ/@@download/ENCFF978DQZ.bam GRCh38 released s3://encode-public/2018/03/28/ad12db6a-dbe9-4695-a6b1-e38ddd463d3f/ENCFF978DQZ.bam ENCFF348ZZP bed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF597SLV 2029847 Tim Reddy, Duke ebab6082085a4eac0936224756c65c49 https://www.encodeproject.org/files/ENCFF348ZZP/@@download/ENCFF348ZZP.bed.gz GRCh38 released s3://encode-public/2018/03/28/62564156-f954-49db-b5a3-c35486ad34f5/ENCFF348ZZP.bed.gz ENCFF550DRF bed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF978DQZ 1820727 Tim Reddy, Duke 82d58531a10f80ca32454b5edd1f8815 https://www.encodeproject.org/files/ENCFF550DRF/@@download/ENCFF550DRF.bed.gz GRCh38 released s3://encode-public/2018/03/28/f6361d13-4c9c-47fc-ba31-3011b0572ea1/ENCFF550DRF.bed.gz ENCFF615OFN bigBed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF348ZZP 4513495 Tim Reddy, Duke 539c7ebd8bf9160e121f7898bf7ec651 https://www.encodeproject.org/files/ENCFF615OFN/@@download/ENCFF615OFN.bigBed GRCh38 released s3://encode-public/2018/03/28/999e8c53-77be-45d2-ad80-883af215c0df/ENCFF615OFN.bigBed ENCFF801YCD bed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF248HDS 2212453 Tim Reddy, Duke ae11fbdfa6aa5bee61b79a4977b8599b https://www.encodeproject.org/files/ENCFF801YCD/@@download/ENCFF801YCD.bed.gz GRCh38 released s3://encode-public/2018/03/28/19a18a74-2875-4cdc-93f3-47aef1764a7b/ENCFF801YCD.bed.gz ENCFF801MPJ bigBed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF550DRF 3423794 Tim Reddy, Duke a2d66cd18f0972f4038c6a123df2d315 https://www.encodeproject.org/files/ENCFF801MPJ/@@download/ENCFF801MPJ.bigBed GRCh38 released s3://encode-public/2018/03/28/8f6c6958-f93c-4aad-8705-0779d27c6c96/ENCFF801MPJ.bigBed ENCFF103COS bigWig signal of unique reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF597SLV 279678628 Tim Reddy, Duke 39f77a1675fd241331326858916bcd9b https://www.encodeproject.org/files/ENCFF103COS/@@download/ENCFF103COS.bigWig GRCh38 released s3://encode-public/2018/03/28/4dc9995d-bc88-4fc1-9112-47c15adcdfb6/ENCFF103COS.bigWig ENCFF070PUA bigBed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF801YCD 4029536 Tim Reddy, Duke 4b267cd9842c66f79b99d59bf7db66ca https://www.encodeproject.org/files/ENCFF070PUA/@@download/ENCFF070PUA.bigBed GRCh38 released s3://encode-public/2018/03/28/8411b032-b66e-48b3-b8c9-55ee6038dd31/ENCFF070PUA.bigBed ENCFF631HEX bigWig signal of unique reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF978DQZ 248855284 Tim Reddy, Duke 3deecf3b0d838aa2781371de371b22fe https://www.encodeproject.org/files/ENCFF631HEX/@@download/ENCFF631HEX.bigWig GRCh38 released s3://encode-public/2018/03/28/012c4ced-4674-46e0-975c-30d0beec3c0e/ENCFF631HEX.bigWig ENCFF957GCK bigWig signal of unique reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF248HDS 261142343 Tim Reddy, Duke 1ed15012d076e8e26b8f31c986bdee8f https://www.encodeproject.org/files/ENCFF957GCK/@@download/ENCFF957GCK.bigWig GRCh38 released s3://encode-public/2018/03/28/aa1fdad1-cd25-4436-83ee-6a505d0eb39e/ENCFF957GCK.bigWig ENCFF022FVS fastq reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2022679180 Tim Reddy, Duke 173ccbf65d340f9a5f49e3f7087ada99 SRA:SRR7140571 https://www.encodeproject.org/files/ENCFF022FVS/@@download/ENCFF022FVS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/289c587c-9025-4048-86f2-5d0eca510b03/ENCFF022FVS.fastq.gz ENCFF793VAW fastq reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2247410359 Tim Reddy, Duke 322ef1b1edcbf854e02c914b5ab081c6 SRA:SRR7140572 https://www.encodeproject.org/files/ENCFF793VAW/@@download/ENCFF793VAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/fcd337b8-eb68-41dd-be1f-c188446aa240/ENCFF793VAW.fastq.gz ENCFF224EAV fastq reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 2562556862 Tim Reddy, Duke 08a203d867a3360de92cf50d03837f20 SRA:SRR7140573 https://www.encodeproject.org/files/ENCFF224EAV/@@download/ENCFF224EAV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/a5e6b7cd-be1e-474d-a5a2-1ca5388fea29/ENCFF224EAV.fastq.gz ENCFF349HIL bam alignments ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF610JYD, GRCh38_no_alt_analysis_set_GCA_000001405.15 1176432206 Tim Reddy, Duke 7c8021b8654a1e4a8ef043da45402d5a https://www.encodeproject.org/files/ENCFF349HIL/@@download/ENCFF349HIL.bam GRCh38 released s3://encode-public/2018/03/28/fa1e7335-5c7a-4609-b026-2ef121c514b4/ENCFF349HIL.bam ENCFF739AIR bam alignments ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF124LBK, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1142521195 Tim Reddy, Duke 32530a385a5d1a663c89ae0a45c483e6 https://www.encodeproject.org/files/ENCFF739AIR/@@download/ENCFF739AIR.bam GRCh38 released s3://encode-public/2018/03/28/e9f04617-45b7-4707-9de3-7ce14814df41/ENCFF739AIR.bam ENCFF805SKX bed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF349HIL 1859150 Tim Reddy, Duke 0f52f09a501d25110d03c62276cb65f7 https://www.encodeproject.org/files/ENCFF805SKX/@@download/ENCFF805SKX.bed.gz GRCh38 released s3://encode-public/2018/03/28/14070d8e-5ce5-4c31-bec7-985361fa321e/ENCFF805SKX.bed.gz ENCFF714SLY bam alignments ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF115PAE, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1071711227 Tim Reddy, Duke c03e3201ebe6e572c2d3dc9bc64af09d https://www.encodeproject.org/files/ENCFF714SLY/@@download/ENCFF714SLY.bam GRCh38 released s3://encode-public/2018/03/28/2d7a8662-e297-4085-80d1-b151d1420a32/ENCFF714SLY.bam ENCFF316KZZ bed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF739AIR 1971351 Tim Reddy, Duke 6bde9940debfaa424b2b9fafda5cd0c8 https://www.encodeproject.org/files/ENCFF316KZZ/@@download/ENCFF316KZZ.bed.gz GRCh38 released s3://encode-public/2018/03/28/ff5e8371-da36-4edc-94a7-840cdee0ab22/ENCFF316KZZ.bed.gz ENCFF013HFS bed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF714SLY 1694534 Tim Reddy, Duke 590afd2bc6548f26373e700150086bd5 https://www.encodeproject.org/files/ENCFF013HFS/@@download/ENCFF013HFS.bed.gz GRCh38 released s3://encode-public/2018/03/28/29629aa1-a451-41e7-825d-74ab520f0910/ENCFF013HFS.bed.gz ENCFF031ULO bigBed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF805SKX 4198209 Tim Reddy, Duke 0089e4f82ce860b71b6dd8bb468bd7fc https://www.encodeproject.org/files/ENCFF031ULO/@@download/ENCFF031ULO.bigBed GRCh38 released s3://encode-public/2018/03/28/4fb30756-e3a2-4603-b259-6d81274f9ab0/ENCFF031ULO.bigBed ENCFF959XUO bigBed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF013HFS 3856249 Tim Reddy, Duke 56d69095c38ce4eab4f346fcf2485b24 https://www.encodeproject.org/files/ENCFF959XUO/@@download/ENCFF959XUO.bigBed GRCh38 released s3://encode-public/2018/03/28/40b0a5cb-d43c-47f7-8dfd-d7d7018fc2f3/ENCFF959XUO.bigBed ENCFF901ZXK bigBed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF316KZZ 4430522 Tim Reddy, Duke 5af33bc711db86b9cf9ffd1dedb4ac19 https://www.encodeproject.org/files/ENCFF901ZXK/@@download/ENCFF901ZXK.bigBed GRCh38 released s3://encode-public/2018/03/28/e3da06e7-8a35-488f-8628-c0f4187abf34/ENCFF901ZXK.bigBed ENCFF346DWI bigWig signal of unique reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF714SLY 266734409 Tim Reddy, Duke e6bcf789115eabd0df25166c5e44e9fc https://www.encodeproject.org/files/ENCFF346DWI/@@download/ENCFF346DWI.bigWig GRCh38 released s3://encode-public/2018/03/28/130e08bc-e26e-4f9c-a422-d94b088148c0/ENCFF346DWI.bigWig ENCFF187QBL bigWig signal of unique reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF739AIR 282451957 Tim Reddy, Duke 8b70360b578bfdd551405fe042ab781e https://www.encodeproject.org/files/ENCFF187QBL/@@download/ENCFF187QBL.bigWig GRCh38 released s3://encode-public/2018/03/28/fe4cb341-c860-42c2-bdfe-737cf387708b/ENCFF187QBL.bigWig ENCFF124LBK fastq reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 1884648321 Tim Reddy, Duke cde809aea0d79ca55b1718e74609f641 SRA:SRR7140575 https://www.encodeproject.org/files/ENCFF124LBK/@@download/ENCFF124LBK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/4076ca33-8d07-4a23-b8af-a44c65d4999a/ENCFF124LBK.fastq.gz ENCFF151XYQ bigWig signal of unique reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF349HIL 293066837 Tim Reddy, Duke e9ad8a8fc378165f7b07aab06efd6978 https://www.encodeproject.org/files/ENCFF151XYQ/@@download/ENCFF151XYQ.bigWig GRCh38 released s3://encode-public/2018/03/28/258434c8-6197-4253-b322-3c25a09a95c4/ENCFF151XYQ.bigWig ENCFF115PAE fastq reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2192555730 Tim Reddy, Duke 936dc29f4161b5349213c8612d261025 SRA:SRR7140574 https://www.encodeproject.org/files/ENCFF115PAE/@@download/ENCFF115PAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/63de45fe-c3b0-430b-b9d1-78514e8ae750/ENCFF115PAE.fastq.gz ENCFF610JYD fastq reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2183902837 Tim Reddy, Duke 91b052fdf24f09a6ac7f6c7c0d3e956a SRA:SRR7140576 https://www.encodeproject.org/files/ENCFF610JYD/@@download/ENCFF610JYD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/18cefe45-bcb6-4c7d-99e9-0207dcd95810/ENCFF610JYD.fastq.gz ENCFF426DGP bam alignments ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF744SXE, GRCh38_no_alt_analysis_set_GCA_000001405.15 1357349952 Tim Reddy, Duke 0b322ba376cc9dac4baa1cc79876a0e9 https://www.encodeproject.org/files/ENCFF426DGP/@@download/ENCFF426DGP.bam GRCh38 released s3://encode-public/2018/03/28/274d4b4d-3309-4e1a-8ac4-0a278ec752f6/ENCFF426DGP.bam ENCFF766EGP bam alignments ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF419RSJ, ENCFF888HBH, GRCh38_no_alt_analysis_set_GCA_000001405.15 1293954268 Tim Reddy, Duke a2fd5b81a48f0227892e182e26a127aa https://www.encodeproject.org/files/ENCFF766EGP/@@download/ENCFF766EGP.bam GRCh38 released s3://encode-public/2018/03/28/7f3ffd51-a1c5-488e-a307-742849cb9648/ENCFF766EGP.bam ENCFF350EWF bam alignments ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF419RSJ, ENCFF799HXV, GRCh38_no_alt_analysis_set_GCA_000001405.15 1068081053 Tim Reddy, Duke 73b5217223f260230ec1783c31c08d3a https://www.encodeproject.org/files/ENCFF350EWF/@@download/ENCFF350EWF.bam GRCh38 released s3://encode-public/2018/03/28/d67e9ab2-8bb8-4b20-8dcc-80c787a3dd23/ENCFF350EWF.bam ENCFF784XTH bigBed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF846JAO 4395845 Tim Reddy, Duke fd13e68bd808a78d0c0e428ca04f1484 https://www.encodeproject.org/files/ENCFF784XTH/@@download/ENCFF784XTH.bigBed GRCh38 released s3://encode-public/2018/03/28/a2df9cdc-e019-47ff-8e5f-5c7f62f96708/ENCFF784XTH.bigBed ENCFF552YTX bigBed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF153HNH 4470573 Tim Reddy, Duke 1f38d6114370301511429aaa09404df6 https://www.encodeproject.org/files/ENCFF552YTX/@@download/ENCFF552YTX.bigBed GRCh38 released s3://encode-public/2018/03/28/f5c356b8-0ad3-438f-98f9-47e52124357d/ENCFF552YTX.bigBed ENCFF846JAO bed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF766EGP 1933224 Tim Reddy, Duke 7724788cfff0838e6de6523b2715c280 https://www.encodeproject.org/files/ENCFF846JAO/@@download/ENCFF846JAO.bed.gz GRCh38 released s3://encode-public/2018/03/28/8436d05e-6084-4540-813a-c079b2b731a0/ENCFF846JAO.bed.gz ENCFF153HNH bed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF426DGP 2025701 Tim Reddy, Duke 387684bdb76e537f08ad300008f61d17 https://www.encodeproject.org/files/ENCFF153HNH/@@download/ENCFF153HNH.bed.gz GRCh38 released s3://encode-public/2018/03/28/dd5d330e-47f4-444d-b0cb-fa179cc86289/ENCFF153HNH.bed.gz ENCFF198GUB bed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF350EWF 2065969 Tim Reddy, Duke 4f9903c85ccee046b75ce29955459b63 https://www.encodeproject.org/files/ENCFF198GUB/@@download/ENCFF198GUB.bed.gz GRCh38 released s3://encode-public/2018/03/28/08d985a5-a774-44c9-9b6a-1afb84b7e306/ENCFF198GUB.bed.gz ENCFF516KEW bigBed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF198GUB 3778444 Tim Reddy, Duke 44875f20b3eaecc61d248fea4ca070d7 https://www.encodeproject.org/files/ENCFF516KEW/@@download/ENCFF516KEW.bigBed GRCh38 released s3://encode-public/2018/03/28/e196b8e7-6a44-4828-b579-397f12f9e419/ENCFF516KEW.bigBed ENCFF793QVM bigWig signal of unique reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF766EGP 316628524 Tim Reddy, Duke 376554a169c5ce831b110e742a7e785f https://www.encodeproject.org/files/ENCFF793QVM/@@download/ENCFF793QVM.bigWig GRCh38 released s3://encode-public/2018/03/28/8bc88788-0118-4604-ae1a-47e03e9a7597/ENCFF793QVM.bigWig ENCFF996YIQ bigWig signal of unique reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF350EWF 264485421 Tim Reddy, Duke 9ae4b45e10cfec5ebc8c8e621f426099 https://www.encodeproject.org/files/ENCFF996YIQ/@@download/ENCFF996YIQ.bigWig GRCh38 released s3://encode-public/2018/03/28/86a5728f-5b63-452c-b404-5834f5188cd9/ENCFF996YIQ.bigWig ENCFF573YDE bigWig signal of unique reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF426DGP 328850712 Tim Reddy, Duke b2e4777703ad5cf7823498d8d8a49804 https://www.encodeproject.org/files/ENCFF573YDE/@@download/ENCFF573YDE.bigWig GRCh38 released s3://encode-public/2018/03/28/64276eb5-2620-4a74-8722-afed858699d7/ENCFF573YDE.bigWig ENCFF799HXV fastq reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 1888602830 Tim Reddy, Duke d4b723fbfb9e455206240c04383ae015 SRA:SRR7140564 https://www.encodeproject.org/files/ENCFF799HXV/@@download/ENCFF799HXV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/1f08c2ac-21a7-4851-9afb-db28114bb41f/ENCFF799HXV.fastq.gz ENCFF744SXE fastq reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2328837981 Tim Reddy, Duke 7fce9205aa04242623a03ef4e1522e3c SRA:SRR7140563 https://www.encodeproject.org/files/ENCFF744SXE/@@download/ENCFF744SXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/60f71ff2-2204-4f95-a527-2f10757fba57/ENCFF744SXE.fastq.gz ENCFF888HBH fastq reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2466960652 Tim Reddy, Duke acb43eeec93d86a5c92a646219344b9f SRA:SRR7140562 https://www.encodeproject.org/files/ENCFF888HBH/@@download/ENCFF888HBH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/cf5895e3-7a84-42f7-aee6-9b0206d588c7/ENCFF888HBH.fastq.gz ENCFF595ZAG fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF815MRL 1306312607 Michael Snyder, Stanford 75a8bea0d172a0c26326d5318f100d39 https://www.encodeproject.org/files/ENCFF595ZAG/@@download/ENCFF595ZAG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/5d8044a0-b294-4cfb-a4b0-a25b63a06830/ENCFF595ZAG.fastq.gz experiment not submitted to GEO ENCFF348WZH fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF830DYJ 4515804277 Michael Snyder, Stanford 21d008d86c9e937c2e67621fdd4be2d9 https://www.encodeproject.org/files/ENCFF348WZH/@@download/ENCFF348WZH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/dfe3ac0d-3576-4efd-bf33-eac3f3446286/ENCFF348WZH.fastq.gz experiment not submitted to GEO ENCFF830DYJ fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF348WZH 4815052910 Michael Snyder, Stanford 74fef33eef06c33bb89d82a2e71d84e5 https://www.encodeproject.org/files/ENCFF830DYJ/@@download/ENCFF830DYJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/291f2798-bcb9-4a5a-94f8-0cc3628bc1a8/ENCFF830DYJ.fastq.gz experiment not submitted to GEO ENCFF815MRL fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF595ZAG 1262891570 Michael Snyder, Stanford 75ad9febab0da21a786a9fee91b3b35e https://www.encodeproject.org/files/ENCFF815MRL/@@download/ENCFF815MRL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/c7a1b758-ac68-4238-b460-9c09f89330ec/ENCFF815MRL.fastq.gz experiment not submitted to GEO ENCFF829XME bam alignments ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF348WZH, ENCFF595ZAG, ENCFF815MRL, ENCFF830DYJ 7331964483 Anshul Kundaje, Stanford 3cda4440912248ed7227e012d9755c8f https://www.encodeproject.org/files/ENCFF829XME/@@download/ENCFF829XME.bam GRCh38 released s3://encode-public/2016/12/22/585a6076-02d0-47ae-81ef-d89cfddfa98a/ENCFF829XME.bam experiment not submitted to GEO ENCFF998XTA bigWig signal p-value ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF829XME 718805326 Anshul Kundaje, Stanford 13992ded817a01f7a84620985548a1b7 https://www.encodeproject.org/files/ENCFF998XTA/@@download/ENCFF998XTA.bigWig GRCh38 released s3://encode-public/2016/12/22/b025dcb4-751c-4233-a4ab-74312f88945a/ENCFF998XTA.bigWig experiment not submitted to GEO ENCFF791YDT bigWig fold change over control ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF829XME 1014351149 Anshul Kundaje, Stanford 0cb5c3e492c21ebdb1aeef199081f684 https://www.encodeproject.org/files/ENCFF791YDT/@@download/ENCFF791YDT.bigWig GRCh38 released s3://encode-public/2016/12/22/3170247c-ab80-4a54-8d38-e4e08c63844f/ENCFF791YDT.bigWig experiment not submitted to GEO ENCFF433SND fastq reads ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF478QWN 3726348180 Michael Snyder, Stanford 6b9843222fef677c7a96ebc2ef20fb25 https://www.encodeproject.org/files/ENCFF433SND/@@download/ENCFF433SND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/30ba5f0e-ec10-47fe-a388-dced85cee674/ENCFF433SND.fastq.gz experiment not submitted to GEO ENCFF478QWN fastq reads ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF433SND 3548714114 Michael Snyder, Stanford 7b3b842d32a04a1555da61c43421464d https://www.encodeproject.org/files/ENCFF478QWN/@@download/ENCFF478QWN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/f8fbe750-1e4e-470e-b2ea-bb62d995d243/ENCFF478QWN.fastq.gz experiment not submitted to GEO ENCFF768UMR bam alignments ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF433SND, ENCFF478QWN 3913592389 Anshul Kundaje, Stanford 6413c5282c845cbba1fc64a54f9f3425 https://www.encodeproject.org/files/ENCFF768UMR/@@download/ENCFF768UMR.bam GRCh38 released s3://encode-public/2016/12/22/246f630f-baf8-4896-9e1b-79fe72d3f7a8/ENCFF768UMR.bam experiment not submitted to GEO ENCFF143RZI bigWig signal p-value ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF768UMR 954659909 Anshul Kundaje, Stanford 0b2c5f7718aa1ab7f3cf9738f4dacbac https://www.encodeproject.org/files/ENCFF143RZI/@@download/ENCFF143RZI.bigWig GRCh38 released s3://encode-public/2016/12/22/f088f922-9da6-4e38-abe6-72777ef0c253/ENCFF143RZI.bigWig experiment not submitted to GEO ENCFF500FTH bigWig fold change over control ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF768UMR 931105644 Anshul Kundaje, Stanford cf7743d3042c771f15b994298a058648 https://www.encodeproject.org/files/ENCFF500FTH/@@download/ENCFF500FTH.bigWig GRCh38 released s3://encode-public/2016/12/22/5b9d6f05-2956-4de9-856e-98eb36530ae5/ENCFF500FTH.bigWig experiment not submitted to GEO ENCFF348JLD fastq reads ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF142TIS 4965739859 Michael Snyder, Stanford 1b4601134ac6499e2e3f86a3fd246d22 https://www.encodeproject.org/files/ENCFF348JLD/@@download/ENCFF348JLD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/24d2d0fd-b814-4537-8427-fa47b75d5f69/ENCFF348JLD.fastq.gz experiment not submitted to GEO ENCFF142TIS fastq reads ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF348JLD 5297057229 Michael Snyder, Stanford c89fbf03647299030385053e1665d16a https://www.encodeproject.org/files/ENCFF142TIS/@@download/ENCFF142TIS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/87c239ab-ef0e-4d49-8a24-fec45ec5c565/ENCFF142TIS.fastq.gz experiment not submitted to GEO ENCFF168OTV bam alignments ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF142TIS, ENCFF348JLD 6543431811 Anshul Kundaje, Stanford e5aae24f4737a1ae5a2531909ad01886 https://www.encodeproject.org/files/ENCFF168OTV/@@download/ENCFF168OTV.bam GRCh38 released s3://encode-public/2016/12/22/b53a1699-5657-4824-9a3d-b19af80784f7/ENCFF168OTV.bam experiment not submitted to GEO ENCFF140JYW bigWig signal p-value ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF168OTV 1044128179 Anshul Kundaje, Stanford b3495341b931b3cb77804421db0b32c8 https://www.encodeproject.org/files/ENCFF140JYW/@@download/ENCFF140JYW.bigWig GRCh38 released s3://encode-public/2016/12/22/98814e46-db97-4535-8ff7-90a9b6c47be4/ENCFF140JYW.bigWig experiment not submitted to GEO ENCFF742FNY bigWig fold change over control ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF168OTV 1321554269 Anshul Kundaje, Stanford 739e305b72c3ba4000b768934a26cd01 https://www.encodeproject.org/files/ENCFF742FNY/@@download/ENCFF742FNY.bigWig GRCh38 released s3://encode-public/2016/12/22/49a315b4-c022-49ed-90f6-55d8180d2696/ENCFF742FNY.bigWig experiment not submitted to GEO ENCFF326XJM fastq reads ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF300KHX 5143071720 Michael Snyder, Stanford 3ccdc270eea6605ee1df99eab9b18728 https://www.encodeproject.org/files/ENCFF326XJM/@@download/ENCFF326XJM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/145c7583-a995-468b-817c-281786ca3bd9/ENCFF326XJM.fastq.gz experiment not submitted to GEO ENCFF300KHX fastq reads ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF326XJM 4905331399 Michael Snyder, Stanford 0fc0e67ed3d6e7a87970c95dbb118e43 https://www.encodeproject.org/files/ENCFF300KHX/@@download/ENCFF300KHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/c8cb3454-f8ae-4339-8ddf-25aba6ecdf2b/ENCFF300KHX.fastq.gz experiment not submitted to GEO ENCFF069SZE bam alignments ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF300KHX, ENCFF326XJM 5840429308 Anshul Kundaje, Stanford 588f1f67b98a2ff91bddd0d97512587d https://www.encodeproject.org/files/ENCFF069SZE/@@download/ENCFF069SZE.bam GRCh38 released s3://encode-public/2016/12/13/45fc6bad-a576-4d95-b646-9f93a378a4dd/ENCFF069SZE.bam experiment not submitted to GEO ENCFF492WGC bigWig signal p-value ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF069SZE 783877090 Anshul Kundaje, Stanford 4decbb66b151a86761e9e6b6537f373e https://www.encodeproject.org/files/ENCFF492WGC/@@download/ENCFF492WGC.bigWig GRCh38 released s3://encode-public/2016/12/13/7d83ddea-ca64-4fd9-b6e4-6766b8600773/ENCFF492WGC.bigWig experiment not submitted to GEO ENCFF873ASN bigWig fold change over control ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF069SZE 1239325972 Anshul Kundaje, Stanford 96b306f589157dc4ff77fd4f14425602 https://www.encodeproject.org/files/ENCFF873ASN/@@download/ENCFF873ASN.bigWig GRCh38 released s3://encode-public/2016/12/13/51a14934-6aa6-4447-a600-5cb59376a900/ENCFF873ASN.bigWig experiment not submitted to GEO ENCFF020COS bam alignments ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF388LOY, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1095840758 Tim Reddy, Duke 3f237fe781fa7fdea284c9e4ff9b930f https://www.encodeproject.org/files/ENCFF020COS/@@download/ENCFF020COS.bam GRCh38 released s3://encode-public/2018/03/28/cc41308f-1317-4e86-aac1-b0ad57288329/ENCFF020COS.bam ENCFF758ORC bam alignments ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF419RSJ, ENCFF463IRI, GRCh38_no_alt_analysis_set_GCA_000001405.15 1352917718 Tim Reddy, Duke a3900f160dba6458436b255c3675fd07 https://www.encodeproject.org/files/ENCFF758ORC/@@download/ENCFF758ORC.bam GRCh38 released s3://encode-public/2018/03/28/4a9bfaab-4629-4d99-a66f-377b5ebd1c83/ENCFF758ORC.bam ENCFF548YMP bed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF809EKV 2158052 Tim Reddy, Duke bb05b872c447768baf223abe71be61e5 https://www.encodeproject.org/files/ENCFF548YMP/@@download/ENCFF548YMP.bed.gz GRCh38 released s3://encode-public/2018/03/28/ead28180-9cf2-4f3d-a050-ad56f7512b67/ENCFF548YMP.bed.gz ENCFF809EKV bam alignments ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF545DRH, GRCh38_no_alt_analysis_set_GCA_000001405.15 1247010844 Tim Reddy, Duke afa5d74f5ba108bed9b8e05db5eafcda https://www.encodeproject.org/files/ENCFF809EKV/@@download/ENCFF809EKV.bam GRCh38 released s3://encode-public/2018/03/28/6a997122-ddd6-42fe-8462-a66d39e843ba/ENCFF809EKV.bam ENCFF284EEQ bed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF758ORC 1695865 Tim Reddy, Duke 27de0569b82214a9c4c0b618265e8ca8 https://www.encodeproject.org/files/ENCFF284EEQ/@@download/ENCFF284EEQ.bed.gz GRCh38 released s3://encode-public/2018/03/28/998aca26-c3b6-419a-959f-030cf2dd4e55/ENCFF284EEQ.bed.gz ENCFF700KSJ bed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF020COS 2330569 Tim Reddy, Duke 913324b5a7cfaedcd8c7420ab6ff7f1b https://www.encodeproject.org/files/ENCFF700KSJ/@@download/ENCFF700KSJ.bed.gz GRCh38 released s3://encode-public/2018/03/28/3bf290c4-2ba5-4bae-ab5c-337b3f62cb29/ENCFF700KSJ.bed.gz ENCFF411QDI bigBed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF548YMP 4768696 Tim Reddy, Duke de32fe7d5f3fc103945fea4e68b72db1 https://www.encodeproject.org/files/ENCFF411QDI/@@download/ENCFF411QDI.bigBed GRCh38 released s3://encode-public/2018/03/28/36c9d8ec-8fad-4fdb-b53f-f624d331b43c/ENCFF411QDI.bigBed ENCFF900GVO bigWig signal of unique reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF809EKV 304317630 Tim Reddy, Duke f92da06ddcb0cc4abdfc481cbad6cd95 https://www.encodeproject.org/files/ENCFF900GVO/@@download/ENCFF900GVO.bigWig GRCh38 released s3://encode-public/2018/03/28/845c8400-6622-4419-896c-d9e8b670f0b8/ENCFF900GVO.bigWig ENCFF729UUS bigBed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF284EEQ 3866782 Tim Reddy, Duke 2ba7f860f839317152c1e6a0a1c58687 https://www.encodeproject.org/files/ENCFF729UUS/@@download/ENCFF729UUS.bigBed GRCh38 released s3://encode-public/2018/03/28/5eb1f924-f1f9-4616-8506-2137025ff581/ENCFF729UUS.bigBed ENCFF145LPD bigBed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF700KSJ 5119907 Tim Reddy, Duke b6e3b9357ebc449b2e79a6034e0ac335 https://www.encodeproject.org/files/ENCFF145LPD/@@download/ENCFF145LPD.bigBed GRCh38 released s3://encode-public/2018/03/28/4b558fac-ff78-4b53-bb79-d2824685dc2a/ENCFF145LPD.bigBed ENCFF545DRH fastq reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2119156867 Tim Reddy, Duke 2d57e980790eb47313df58be4d5bf334 SRA:SRR7140565 https://www.encodeproject.org/files/ENCFF545DRH/@@download/ENCFF545DRH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/6ac0e3a3-666a-4124-9321-27f1b59dc781/ENCFF545DRH.fastq.gz ENCFF327HNA bigWig signal of unique reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF758ORC 326768894 Tim Reddy, Duke a837aca4156979b6cb3872d19f8dc53b https://www.encodeproject.org/files/ENCFF327HNA/@@download/ENCFF327HNA.bigWig GRCh38 released s3://encode-public/2018/03/28/8bd17062-9bf1-43de-84dc-c59fd66a503a/ENCFF327HNA.bigWig ENCFF258LUB bigWig signal of unique reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF020COS 266557798 Tim Reddy, Duke 3fefd0ef62b0be52d9eb616310e44af5 https://www.encodeproject.org/files/ENCFF258LUB/@@download/ENCFF258LUB.bigWig GRCh38 released s3://encode-public/2018/03/28/6843fd9e-f609-4e1a-8d67-c95b0e79d121/ENCFF258LUB.bigWig ENCFF463IRI fastq reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2195057721 Tim Reddy, Duke 1d89ab77bb61562e7e4419957edf36a0 SRA:SRR7140567 https://www.encodeproject.org/files/ENCFF463IRI/@@download/ENCFF463IRI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/2d4867d9-dc2c-45dd-9844-b6c8b1eea8e7/ENCFF463IRI.fastq.gz ENCFF388LOY fastq reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 1994643584 Tim Reddy, Duke ec522b746836d3fb38b1da0888893b3c SRA:SRR7140566 https://www.encodeproject.org/files/ENCFF388LOY/@@download/ENCFF388LOY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/225158f6-c634-4780-b8df-ffbadf45a135/ENCFF388LOY.fastq.gz ENCFF549AFY fastq reads ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF695YHX 2650545956 Michael Snyder, Stanford 0dd6cc4ee4ab7c000259aeec5fb3bc1c https://www.encodeproject.org/files/ENCFF549AFY/@@download/ENCFF549AFY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/aad7073f-c3a6-40e9-a2ec-3782171ab8d7/ENCFF549AFY.fastq.gz experiment not submitted to GEO ENCFF695YHX fastq reads ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF549AFY 2364455049 Michael Snyder, Stanford 6be014df65aedac462f4baf24701e394 https://www.encodeproject.org/files/ENCFF695YHX/@@download/ENCFF695YHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/ab140d43-d2f7-4f04-a5a6-6cb3115c4c05/ENCFF695YHX.fastq.gz experiment not submitted to GEO ENCFF148ZMS bigWig fold change over control ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 ENCFF906UQF 654990768 Anshul Kundaje, Stanford 1af06447fa03bbd87adecdb2ef9573c7 https://www.encodeproject.org/files/ENCFF148ZMS/@@download/ENCFF148ZMS.bigWig GRCh38 released s3://encode-public/2017/02/09/f06d71fa-1c74-4da6-b96c-9b057c76ab75/ENCFF148ZMS.bigWig experiment not submitted to GEO ENCFF906UQF bam alignments ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 ENCFF549AFY, ENCFF695YHX 2790814049 Anshul Kundaje, Stanford 8eb6d2a8aa8ea1cc41bb8253b5c64936 https://www.encodeproject.org/files/ENCFF906UQF/@@download/ENCFF906UQF.bam GRCh38 released s3://encode-public/2017/02/09/65a8f6c1-28a6-402a-a62d-00cc813cfeb8/ENCFF906UQF.bam experiment not submitted to GEO ENCFF399LRC bigWig signal p-value ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 ENCFF906UQF 615223179 Anshul Kundaje, Stanford 8e7b5aff39520f01f7348ac277d59cb8 https://www.encodeproject.org/files/ENCFF399LRC/@@download/ENCFF399LRC.bigWig GRCh38 released s3://encode-public/2017/02/09/a35444d2-a05f-4a5d-b8fb-8082a038ec34/ENCFF399LRC.bigWig experiment not submitted to GEO ENCFF521ITF fastq reads ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF346CDZ 4500653597 Michael Snyder, Stanford 64a38bff415be87efc61d2a63dacf8c4 https://www.encodeproject.org/files/ENCFF521ITF/@@download/ENCFF521ITF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/84d16288-9736-4af5-a298-3bdded655fa0/ENCFF521ITF.fastq.gz experiment not submitted to GEO ENCFF346CDZ fastq reads ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF521ITF 4736024950 Michael Snyder, Stanford 9b138d252f4515d7c6c96034d435e850 https://www.encodeproject.org/files/ENCFF346CDZ/@@download/ENCFF346CDZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/6574fe31-5766-40d6-94b0-16f9010884da/ENCFF346CDZ.fastq.gz experiment not submitted to GEO ENCFF675QOY bam alignments ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF346CDZ, ENCFF521ITF 5930910427 Anshul Kundaje, Stanford 85e4ba19db10cfa0f75dfd66f5ef0c61 https://www.encodeproject.org/files/ENCFF675QOY/@@download/ENCFF675QOY.bam GRCh38 released s3://encode-public/2016/12/22/205e2227-e2f8-489f-8ee3-acb6a996f8b6/ENCFF675QOY.bam experiment not submitted to GEO ENCFF368VLY bigWig signal p-value ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF675QOY 1174000349 Anshul Kundaje, Stanford ae7151d7a23e1dac715f1edc6ad738d0 https://www.encodeproject.org/files/ENCFF368VLY/@@download/ENCFF368VLY.bigWig GRCh38 released s3://encode-public/2016/12/22/a658590c-4964-4f9f-9c62-90d8a00fa6a2/ENCFF368VLY.bigWig experiment not submitted to GEO ENCFF415RKU bigWig fold change over control ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF675QOY 1385037599 Anshul Kundaje, Stanford 4248853c99a6b9e3b77159319300b7de https://www.encodeproject.org/files/ENCFF415RKU/@@download/ENCFF415RKU.bigWig GRCh38 released s3://encode-public/2016/12/22/c7634c18-a080-4b59-911f-582cb74191a6/ENCFF415RKU.bigWig experiment not submitted to GEO ENCFF033TLP fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF095LGS 1707195642 Michael Snyder, Stanford 02a0fe4a57d8fd0ef8e63cd082e0243e https://www.encodeproject.org/files/ENCFF033TLP/@@download/ENCFF033TLP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/96b81a9e-898d-4802-a660-53d6fa65b1f2/ENCFF033TLP.fastq.gz experiment not submitted to GEO ENCFF290XJM fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF966SFV 3771621707 Michael Snyder, Stanford 2fe9a5c2f6a9e9712b4b0f36f8f121f6 https://www.encodeproject.org/files/ENCFF290XJM/@@download/ENCFF290XJM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/be0062c6-e7cb-48a0-90f4-2b494ea76c20/ENCFF290XJM.fastq.gz experiment not submitted to GEO ENCFF966SFV fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF290XJM 3554742874 Michael Snyder, Stanford ef6968dfe1e3610d0b275cbe73bcd4f4 https://www.encodeproject.org/files/ENCFF966SFV/@@download/ENCFF966SFV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/470f38ea-b845-4da9-accd-a20935b8afc8/ENCFF966SFV.fastq.gz experiment not submitted to GEO ENCFF095LGS fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF033TLP 1765607657 Michael Snyder, Stanford d4dd4d7c6e974a6992203db779e27bec https://www.encodeproject.org/files/ENCFF095LGS/@@download/ENCFF095LGS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/f9af2fd2-bbff-4626-93f8-0f91f45e6de9/ENCFF095LGS.fastq.gz experiment not submitted to GEO ENCFF710ELD bam alignments ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF033TLP, ENCFF095LGS, ENCFF290XJM, ENCFF966SFV 7599791274 Anshul Kundaje, Stanford 42b7a91d4c0d4df2a0cdf8bff55a7aa9 https://www.encodeproject.org/files/ENCFF710ELD/@@download/ENCFF710ELD.bam GRCh38 released s3://encode-public/2016/12/22/2bdca221-0442-477a-bd27-de14f260fdab/ENCFF710ELD.bam experiment not submitted to GEO ENCFF349HDW bigWig signal p-value ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF710ELD 911360925 Anshul Kundaje, Stanford 6130c0b33c289015b95ecbb8488da215 https://www.encodeproject.org/files/ENCFF349HDW/@@download/ENCFF349HDW.bigWig GRCh38 released s3://encode-public/2016/12/22/c6002c31-d827-48a8-9355-e91142b2cb03/ENCFF349HDW.bigWig experiment not submitted to GEO ENCFF859JIM bigWig fold change over control ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF710ELD 1085380206 Anshul Kundaje, Stanford 17343c86afba94107cd1c4caf0818675 https://www.encodeproject.org/files/ENCFF859JIM/@@download/ENCFF859JIM.bigWig GRCh38 released s3://encode-public/2016/12/22/8affe2fc-f623-4f14-878c-44c0c1b819e8/ENCFF859JIM.bigWig experiment not submitted to GEO ENCFF332SCG fastq reads ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF591BAY 4829455575 Michael Snyder, Stanford 46c728282f436846dda2e6fd06a05d0f https://www.encodeproject.org/files/ENCFF332SCG/@@download/ENCFF332SCG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/9d9bcafc-8027-44b0-bc78-7d680e1af4fd/ENCFF332SCG.fastq.gz experiment not submitted to GEO ENCFF591BAY fastq reads ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF332SCG 4677656905 Michael Snyder, Stanford 615445218c4d845e93fea578a7230422 https://www.encodeproject.org/files/ENCFF591BAY/@@download/ENCFF591BAY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/ec15f652-2fde-4deb-b54d-6b4ce5e6a7db/ENCFF591BAY.fastq.gz experiment not submitted to GEO ENCFF591QAG bigWig signal p-value ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF778VJL 1229149264 Anshul Kundaje, Stanford 4a83f2ec8ed07194aae16fb2125d50b3 https://www.encodeproject.org/files/ENCFF591QAG/@@download/ENCFF591QAG.bigWig GRCh38 released s3://encode-public/2016/12/22/a9441946-951f-41f9-a235-8222a5d73587/ENCFF591QAG.bigWig experiment not submitted to GEO ENCFF778VJL bam alignments ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF332SCG, ENCFF591BAY 6014216214 Anshul Kundaje, Stanford 4f04671a6fc6aaf7a1f52ce381e0bbc6 https://www.encodeproject.org/files/ENCFF778VJL/@@download/ENCFF778VJL.bam GRCh38 released s3://encode-public/2016/12/22/d18a1e9c-ef63-4d63-9a7c-cb8836d02f39/ENCFF778VJL.bam experiment not submitted to GEO ENCFF997HHO bigWig fold change over control ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF778VJL 1396147459 Anshul Kundaje, Stanford 689b9a5828c53a594c75f6534a324a6c https://www.encodeproject.org/files/ENCFF997HHO/@@download/ENCFF997HHO.bigWig GRCh38 released s3://encode-public/2016/12/22/2d0c959d-4abc-49e1-b7a8-739bddd97aad/ENCFF997HHO.bigWig experiment not submitted to GEO ENCFF391IHY fastq reads ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF726YQA 4045672609 Michael Snyder, Stanford be31cd4f5d3fb2c4257985cc5de418b7 https://www.encodeproject.org/files/ENCFF391IHY/@@download/ENCFF391IHY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/181b6e85-bca7-4118-a7b0-0f57a4a5b462/ENCFF391IHY.fastq.gz experiment not submitted to GEO ENCFF726YQA fastq reads ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF391IHY 4191296763 Michael Snyder, Stanford 524ad31b46d18d7b0e41f19255f86193 https://www.encodeproject.org/files/ENCFF726YQA/@@download/ENCFF726YQA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/359b27fd-4e2f-47da-b94d-2994c3aec297/ENCFF726YQA.fastq.gz experiment not submitted to GEO ENCFF294ZCT bam alignments ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF391IHY, ENCFF726YQA 5427510068 Anshul Kundaje, Stanford 3c3d6b9df827ab0aedc0a6ee83f5e44c https://www.encodeproject.org/files/ENCFF294ZCT/@@download/ENCFF294ZCT.bam GRCh38 released s3://encode-public/2016/12/22/cd2a25da-44d7-485b-9d52-186025188364/ENCFF294ZCT.bam experiment not submitted to GEO ENCFF926ODU bigWig fold change over control ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF294ZCT 1321690468 Anshul Kundaje, Stanford 3908052694a51dc69af6f4080bdb5edb https://www.encodeproject.org/files/ENCFF926ODU/@@download/ENCFF926ODU.bigWig GRCh38 released s3://encode-public/2016/12/22/fc67fd4c-c6a7-49af-b018-3d81db4c933f/ENCFF926ODU.bigWig experiment not submitted to GEO ENCFF093YSX bigWig signal p-value ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF294ZCT 1260857354 Anshul Kundaje, Stanford 0f89bd7cb9c2c232f96b74cce67a4a97 https://www.encodeproject.org/files/ENCFF093YSX/@@download/ENCFF093YSX.bigWig GRCh38 released s3://encode-public/2016/12/22/599e2f83-a54d-47d9-abbd-18fbb3119746/ENCFF093YSX.bigWig experiment not submitted to GEO ENCFF775DFR fastq reads ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF543BUC 4602850556 Michael Snyder, Stanford bdd37b02792706bf9b8768e29b4d2ad3 https://www.encodeproject.org/files/ENCFF775DFR/@@download/ENCFF775DFR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/569d5f14-d3d0-47f1-993a-286576425029/ENCFF775DFR.fastq.gz experiment not submitted to GEO ENCFF543BUC fastq reads ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF775DFR 4799433875 Michael Snyder, Stanford cf0f0c17f0774d2e093e9afd85651aa2 https://www.encodeproject.org/files/ENCFF543BUC/@@download/ENCFF543BUC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/037aa938-3e5e-41fd-8f69-70df8056ce06/ENCFF543BUC.fastq.gz experiment not submitted to GEO ENCFF736KFN bam alignments ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF543BUC, ENCFF775DFR 5959114265 Anshul Kundaje, Stanford 2e72fb265251fa56ad9a782457a1467e https://www.encodeproject.org/files/ENCFF736KFN/@@download/ENCFF736KFN.bam GRCh38 released s3://encode-public/2016/12/22/055d3f0f-7b04-42ca-b0eb-66ba41a4ad70/ENCFF736KFN.bam experiment not submitted to GEO ENCFF402SCK bigWig signal p-value ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF736KFN 1301385944 Anshul Kundaje, Stanford 627716bfe37464e95f6c23d66924404a https://www.encodeproject.org/files/ENCFF402SCK/@@download/ENCFF402SCK.bigWig GRCh38 released s3://encode-public/2016/12/22/39348eef-6b06-4226-988b-26fdb91478fc/ENCFF402SCK.bigWig experiment not submitted to GEO ENCFF861YLY bigWig fold change over control ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF736KFN 1355663823 Anshul Kundaje, Stanford b9e422c2d74c38453135c25888619fed https://www.encodeproject.org/files/ENCFF861YLY/@@download/ENCFF861YLY.bigWig GRCh38 released s3://encode-public/2016/12/22/aa25a44e-6df7-4458-bdd4-b53f0482bd43/ENCFF861YLY.bigWig experiment not submitted to GEO ENCFF323WYT fastq reads ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF047HCR 2043877925 Michael Snyder, Stanford 04256f4cbf384f50991df96e4d1ae232 https://www.encodeproject.org/files/ENCFF323WYT/@@download/ENCFF323WYT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/749051d4-34b7-4e4b-bfc7-d2a0cedbbb12/ENCFF323WYT.fastq.gz experiment not submitted to GEO ENCFF047HCR fastq reads ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF323WYT 2253187600 Michael Snyder, Stanford 8b3b8297c5153178ceb3bc4f9511a8a9 https://www.encodeproject.org/files/ENCFF047HCR/@@download/ENCFF047HCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/d7d42076-d0d3-44d1-ae68-792327f7525c/ENCFF047HCR.fastq.gz experiment not submitted to GEO ENCFF846JID bam alignments ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF047HCR, ENCFF323WYT 3048190988 Anshul Kundaje, Stanford f7ffb5b9f6f09a5c529852cd53819d64 https://www.encodeproject.org/files/ENCFF846JID/@@download/ENCFF846JID.bam GRCh38 released s3://encode-public/2017/02/08/8b6adcd5-8aa9-4b7c-9f55-ad4131fc880c/ENCFF846JID.bam experiment not submitted to GEO ENCFF045BFM bigWig fold change over control ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF846JID 680938607 Anshul Kundaje, Stanford 7471fb755a47078035d834d2af4d4ca3 https://www.encodeproject.org/files/ENCFF045BFM/@@download/ENCFF045BFM.bigWig GRCh38 released s3://encode-public/2017/02/08/f252984d-02f1-4e81-b805-34bd12b226c9/ENCFF045BFM.bigWig experiment not submitted to GEO ENCFF581YXT bigWig signal p-value ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF846JID 540064313 Anshul Kundaje, Stanford e6d04bb7e3f1cba5bdcf8800d8694776 https://www.encodeproject.org/files/ENCFF581YXT/@@download/ENCFF581YXT.bigWig GRCh38 released s3://encode-public/2017/02/08/9772d77d-93ca-4262-bb9e-d84b44284ea2/ENCFF581YXT.bigWig experiment not submitted to GEO ENCFF312UDS fastq reads ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF401QEU 3959730588 Michael Snyder, Stanford 6ccffbd5684328d2bed0d3ddff4795c4 https://www.encodeproject.org/files/ENCFF312UDS/@@download/ENCFF312UDS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/a457ce33-ac9b-4046-99ad-5fbe2ecd9180/ENCFF312UDS.fastq.gz experiment not submitted to GEO ENCFF401QEU fastq reads ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF312UDS 4154734332 Michael Snyder, Stanford 9e6375c1828d8e930cf5d88bde85d1df https://www.encodeproject.org/files/ENCFF401QEU/@@download/ENCFF401QEU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/690e6796-0e8e-4260-bd08-deab9b8fb274/ENCFF401QEU.fastq.gz experiment not submitted to GEO ENCFF460SRO bigWig signal p-value ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF325VEG 1200982645 Anshul Kundaje, Stanford 1a1a806f729744c2831d54bd4acfde39 https://www.encodeproject.org/files/ENCFF460SRO/@@download/ENCFF460SRO.bigWig GRCh38 released s3://encode-public/2016/12/22/0b17a18d-4095-42d7-a2a7-22a822153f7a/ENCFF460SRO.bigWig experiment not submitted to GEO ENCFF325VEG bam alignments ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF312UDS, ENCFF401QEU 5452339539 Anshul Kundaje, Stanford c34c3fa1c925d6c614ff70c7647b5ede https://www.encodeproject.org/files/ENCFF325VEG/@@download/ENCFF325VEG.bam GRCh38 released s3://encode-public/2016/12/22/ea1a364f-a736-431a-93b4-9d201f5cfeaa/ENCFF325VEG.bam experiment not submitted to GEO ENCFF284HMB bigWig fold change over control ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF325VEG 1300221220 Anshul Kundaje, Stanford 058cb7aa475aaef050f354f5759b4bc6 https://www.encodeproject.org/files/ENCFF284HMB/@@download/ENCFF284HMB.bigWig GRCh38 released s3://encode-public/2016/12/22/5ec15835-ce97-4f55-baf9-e44942fe2593/ENCFF284HMB.bigWig experiment not submitted to GEO ENCFF574UTU fastq reads ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF331PSK 5242203464 Michael Snyder, Stanford 83f571af0aabeed10d029b4aac9c340d https://www.encodeproject.org/files/ENCFF574UTU/@@download/ENCFF574UTU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/10a8796b-215d-4422-9ba6-7b459bc37f8b/ENCFF574UTU.fastq.gz experiment not submitted to GEO ENCFF331PSK fastq reads ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF574UTU 5532860576 Michael Snyder, Stanford 5f2ccf14efef4587835a1ea7503f6a9e https://www.encodeproject.org/files/ENCFF331PSK/@@download/ENCFF331PSK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/a450ae4c-3a1c-425e-9bdc-f0b4f9c58e2f/ENCFF331PSK.fastq.gz experiment not submitted to GEO ENCFF845HFA bam alignments ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF331PSK, ENCFF574UTU 5888079043 Anshul Kundaje, Stanford 40c3e35c8b35e787347144eaf46c5d81 https://www.encodeproject.org/files/ENCFF845HFA/@@download/ENCFF845HFA.bam GRCh38 released s3://encode-public/2016/12/22/a24528dc-e16f-4900-9962-4178eb293224/ENCFF845HFA.bam experiment not submitted to GEO ENCFF405HIP bigWig signal p-value ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF845HFA 1066107765 Anshul Kundaje, Stanford 9885966a101de9a96bf58c5dfb583a58 https://www.encodeproject.org/files/ENCFF405HIP/@@download/ENCFF405HIP.bigWig GRCh38 released s3://encode-public/2016/12/22/c1e5c4fe-738d-4124-b7c8-b17e82077dd2/ENCFF405HIP.bigWig experiment not submitted to GEO ENCFF031MAM bigWig fold change over control ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF845HFA 1156098937 Anshul Kundaje, Stanford 9473f0b404012d854c4cdf3e15250b74 https://www.encodeproject.org/files/ENCFF031MAM/@@download/ENCFF031MAM.bigWig GRCh38 released s3://encode-public/2016/12/22/047460d1-f305-4ea9-9961-0939f19c6025/ENCFF031MAM.bigWig experiment not submitted to GEO ENCFF935EXE fastq reads ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF251FZX 3178199205 Michael Snyder, Stanford 8bcc0f14ad2d2f78bfdaeec1c55239ff https://www.encodeproject.org/files/ENCFF935EXE/@@download/ENCFF935EXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/eef641b3-cc45-4a48-ba10-b6cd8f9cac85/ENCFF935EXE.fastq.gz experiment not submitted to GEO ENCFF251FZX fastq reads ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF935EXE 3178529357 Michael Snyder, Stanford 8bbe5fd627e638945246aa24206c5906 https://www.encodeproject.org/files/ENCFF251FZX/@@download/ENCFF251FZX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/f06f4cb1-b1a6-4941-b8a2-a60d012a01cd/ENCFF251FZX.fastq.gz experiment not submitted to GEO ENCFF762MNF bam alignments ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF251FZX, ENCFF935EXE 4033862732 Anshul Kundaje, Stanford 5664847a570126ef43fc5dd2149ec33c https://www.encodeproject.org/files/ENCFF762MNF/@@download/ENCFF762MNF.bam GRCh38 released s3://encode-public/2017/04/01/68cfc7a3-4842-4a50-b210-9d8dfb638666/ENCFF762MNF.bam experiment not submitted to GEO ENCFF317TWD bigWig signal p-value ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF762MNF 542944456 Anshul Kundaje, Stanford 8889a2c64131ed534b48c0d3f808af67 https://www.encodeproject.org/files/ENCFF317TWD/@@download/ENCFF317TWD.bigWig GRCh38 released s3://encode-public/2017/04/01/78610eb3-6e5b-464a-9a35-456104bcec13/ENCFF317TWD.bigWig experiment not submitted to GEO ENCFF903OLJ bigWig fold change over control ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF762MNF 696504668 Anshul Kundaje, Stanford 1bc4c012903fd73b1854f9b4ec0ac478 https://www.encodeproject.org/files/ENCFF903OLJ/@@download/ENCFF903OLJ.bigWig GRCh38 released s3://encode-public/2017/04/01/538b69f7-b0c6-4fb9-ac9f-f40bf592ec73/ENCFF903OLJ.bigWig experiment not submitted to GEO ENCFF598USO fastq reads ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF527XCY 3264084132 Michael Snyder, Stanford 647fe1bedcad0d6d3cc92783832cc57b https://www.encodeproject.org/files/ENCFF598USO/@@download/ENCFF598USO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/462308a7-4183-4c62-9bf2-5f2fb4ed6aba/ENCFF598USO.fastq.gz experiment not submitted to GEO ENCFF527XCY fastq reads ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF598USO 3303618101 Michael Snyder, Stanford f417c79278ad73120082d41407423034 https://www.encodeproject.org/files/ENCFF527XCY/@@download/ENCFF527XCY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/c882664c-4bf0-4a58-905d-2f96300e6390/ENCFF527XCY.fastq.gz experiment not submitted to GEO ENCFF670GFY bam alignments ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF527XCY, ENCFF598USO 3119224857 Anshul Kundaje, Stanford 0acc29388903ad695b5e942355fce13f https://www.encodeproject.org/files/ENCFF670GFY/@@download/ENCFF670GFY.bam GRCh38 released s3://encode-public/2017/04/01/cc2cf00e-46f2-448b-ac03-cf52567deafe/ENCFF670GFY.bam experiment not submitted to GEO ENCFF492NWI bigWig signal p-value ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF670GFY 420304504 Anshul Kundaje, Stanford 0794f964ec93ba1ab43e41e181c3ed3d https://www.encodeproject.org/files/ENCFF492NWI/@@download/ENCFF492NWI.bigWig GRCh38 released s3://encode-public/2017/04/01/2aee3773-fcaf-4754-9f86-3cabfa6931c3/ENCFF492NWI.bigWig experiment not submitted to GEO ENCFF644FYW bigWig fold change over control ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF670GFY 483784334 Anshul Kundaje, Stanford 52423edc28e7fa3a79a1acd2c97e10bb https://www.encodeproject.org/files/ENCFF644FYW/@@download/ENCFF644FYW.bigWig GRCh38 released s3://encode-public/2017/04/01/c025347b-374e-40b1-a9ee-57759418ff6f/ENCFF644FYW.bigWig experiment not submitted to GEO ENCFF974WES fastq reads ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF031NSW 4724882816 Michael Snyder, Stanford 2cced50132dcd24db6bf6cdee093fbad https://www.encodeproject.org/files/ENCFF974WES/@@download/ENCFF974WES.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/c7f90bb7-0190-476a-a722-8a5e9d72ddb9/ENCFF974WES.fastq.gz experiment not submitted to GEO ENCFF031NSW fastq reads ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF974WES 4919315907 Michael Snyder, Stanford 2d14e23ed6a636b2d8755ff757e30429 https://www.encodeproject.org/files/ENCFF031NSW/@@download/ENCFF031NSW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/50a7b008-15e1-4018-85cc-97b0b97fbdbc/ENCFF031NSW.fastq.gz experiment not submitted to GEO ENCFF377DAO bam alignments ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF031NSW, ENCFF974WES 5697898303 Anshul Kundaje, Stanford 91158aec5eaba7618b8100db6a7ff127 https://www.encodeproject.org/files/ENCFF377DAO/@@download/ENCFF377DAO.bam GRCh38 released s3://encode-public/2016/12/22/5dd4ba55-6f9e-49fd-ab97-68dd60517ad4/ENCFF377DAO.bam experiment not submitted to GEO ENCFF523ZFE bigWig fold change over control ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF377DAO 1298976542 Anshul Kundaje, Stanford 1a57867944d4318b5ae47b3b8cc41d96 https://www.encodeproject.org/files/ENCFF523ZFE/@@download/ENCFF523ZFE.bigWig GRCh38 released s3://encode-public/2016/12/22/a3b1eafd-64e6-4d8d-a69a-cefe688e1ad1/ENCFF523ZFE.bigWig experiment not submitted to GEO ENCFF361WMW bigWig signal p-value ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF377DAO 1088354105 Anshul Kundaje, Stanford 31ab4e749111f550735df5b08ef28fe9 https://www.encodeproject.org/files/ENCFF361WMW/@@download/ENCFF361WMW.bigWig GRCh38 released s3://encode-public/2016/12/22/fb710cd2-e1a7-4830-bbe5-37988ac3e160/ENCFF361WMW.bigWig experiment not submitted to GEO ENCFF357PYB fastq reads ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF256FOG 3137727981 Michael Snyder, Stanford 3adaf9542ee9762713f0f5207f30f440 https://www.encodeproject.org/files/ENCFF357PYB/@@download/ENCFF357PYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/97b96201-db07-48f0-93a7-0b7084e2e0d0/ENCFF357PYB.fastq.gz experiment not submitted to GEO ENCFF256FOG fastq reads ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF357PYB 2885207663 Michael Snyder, Stanford 56a97c26bda223ec5fc96cba3f196fe9 https://www.encodeproject.org/files/ENCFF256FOG/@@download/ENCFF256FOG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/382e878f-a31d-48fd-acd4-b29196d5bd66/ENCFF256FOG.fastq.gz experiment not submitted to GEO ENCFF048IOT bam alignments ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF256FOG, ENCFF357PYB 4205988145 Anshul Kundaje, Stanford 1bc751e2e0af55e93e7970beaa5b240d https://www.encodeproject.org/files/ENCFF048IOT/@@download/ENCFF048IOT.bam GRCh38 released s3://encode-public/2017/02/09/f0652fd1-bd48-4109-b916-16055dcb149c/ENCFF048IOT.bam experiment not submitted to GEO ENCFF395GYH bigWig signal p-value ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF048IOT 939251068 Anshul Kundaje, Stanford 00e71306ed1b2c5194ed72a4bd6dee10 https://www.encodeproject.org/files/ENCFF395GYH/@@download/ENCFF395GYH.bigWig GRCh38 released s3://encode-public/2017/02/09/e3e570cd-c72c-4061-a9bb-fcd5535e6b7f/ENCFF395GYH.bigWig experiment not submitted to GEO ENCFF422DLF bigWig fold change over control ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF048IOT 988904564 Anshul Kundaje, Stanford 8360cb5dc86a5733a388dd51f572f5d4 https://www.encodeproject.org/files/ENCFF422DLF/@@download/ENCFF422DLF.bigWig GRCh38 released s3://encode-public/2017/02/09/933e8f68-c47c-4142-9f25-27730fc2e966/ENCFF422DLF.bigWig experiment not submitted to GEO ENCFF982ITD fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF230XCO 2183957342 Michael Snyder, Stanford 7b56d98a254ed9f364ca85b766dcf181 https://www.encodeproject.org/files/ENCFF982ITD/@@download/ENCFF982ITD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/54a452ca-e113-411c-9cab-5a8cb0df2f5c/ENCFF982ITD.fastq.gz experiment not submitted to GEO ENCFF230XCO fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF982ITD 2252661433 Michael Snyder, Stanford 328a3ffa502d671f45ff7323ed368072 https://www.encodeproject.org/files/ENCFF230XCO/@@download/ENCFF230XCO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/df8d14a9-eca3-4530-9b6a-956edda4a10d/ENCFF230XCO.fastq.gz experiment not submitted to GEO ENCFF047AOY fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF791GUO 2159742765 Michael Snyder, Stanford caab1a91c2642ba0b8d0bb13c2cb089c https://www.encodeproject.org/files/ENCFF047AOY/@@download/ENCFF047AOY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/ff50cd91-5965-4124-a58d-6692c76bb535/ENCFF047AOY.fastq.gz experiment not submitted to GEO ENCFF791GUO fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF047AOY 2160137135 Michael Snyder, Stanford a598dee665191ad66516cfd78e88fccd https://www.encodeproject.org/files/ENCFF791GUO/@@download/ENCFF791GUO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/8e61c705-2604-4f8b-8f63-ec7c9673180c/ENCFF791GUO.fastq.gz experiment not submitted to GEO ENCFF858PLS bam alignments ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF047AOY, ENCFF230XCO, ENCFF791GUO, ENCFF982ITD 6758326150 Anshul Kundaje, Stanford 5c9e1c27ef46eb48b1f58de63c9fa010 https://www.encodeproject.org/files/ENCFF858PLS/@@download/ENCFF858PLS.bam GRCh38 released s3://encode-public/2016/12/22/381180d6-9fa2-4d68-bc5a-47ac3bc19de1/ENCFF858PLS.bam experiment not submitted to GEO ENCFF700NIW bigWig signal p-value ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF858PLS 849282484 Anshul Kundaje, Stanford e0c52b96eb57bbeb964618d591345d8c https://www.encodeproject.org/files/ENCFF700NIW/@@download/ENCFF700NIW.bigWig GRCh38 released s3://encode-public/2016/12/22/f286af11-761c-495f-a17a-d32f7d05353e/ENCFF700NIW.bigWig experiment not submitted to GEO ENCFF397CZA bigWig fold change over control ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF858PLS 1057606990 Anshul Kundaje, Stanford aa7b735675351cb40be5fbfdf6fc26bf https://www.encodeproject.org/files/ENCFF397CZA/@@download/ENCFF397CZA.bigWig GRCh38 released s3://encode-public/2016/12/22/51b3608c-ae86-4063-bced-2d54c27e5f8f/ENCFF397CZA.bigWig experiment not submitted to GEO ENCFF956PUF fastq reads ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF958NPR 4718585261 Michael Snyder, Stanford a8efd5b2ffc6356c70f0c266841ac19d https://www.encodeproject.org/files/ENCFF956PUF/@@download/ENCFF956PUF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/ace37f89-f400-4353-bb16-5a364cdf949b/ENCFF956PUF.fastq.gz experiment not submitted to GEO ENCFF958NPR fastq reads ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF956PUF 4880428278 Michael Snyder, Stanford 1d89d3831ac58061fa52e109f40c9c5b https://www.encodeproject.org/files/ENCFF958NPR/@@download/ENCFF958NPR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b4deeead-96d2-4060-926c-9179cfc04cdd/ENCFF958NPR.fastq.gz experiment not submitted to GEO ENCFF912PKL bam alignments ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF956PUF, ENCFF958NPR 5704443122 Anshul Kundaje, Stanford df4f6d0fc893e785f9abd45048be3c46 https://www.encodeproject.org/files/ENCFF912PKL/@@download/ENCFF912PKL.bam GRCh38 released s3://encode-public/2016/12/22/ee865b29-b8ea-448e-95fb-5b93cd162848/ENCFF912PKL.bam experiment not submitted to GEO ENCFF724HKZ bigWig fold change over control ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF912PKL 1310715512 Anshul Kundaje, Stanford 553519b50733e3fe12f32c1993dc7ed7 https://www.encodeproject.org/files/ENCFF724HKZ/@@download/ENCFF724HKZ.bigWig GRCh38 released s3://encode-public/2016/12/22/186eb082-22e1-4195-a6ad-61a1d9983370/ENCFF724HKZ.bigWig experiment not submitted to GEO ENCFF483QGA bigWig signal p-value ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF912PKL 1069512757 Anshul Kundaje, Stanford dacfe92bf70564583a210f7e994424c9 https://www.encodeproject.org/files/ENCFF483QGA/@@download/ENCFF483QGA.bigWig GRCh38 released s3://encode-public/2016/12/22/90a806fa-3a7c-4182-a01f-ddea5b2e4b1f/ENCFF483QGA.bigWig experiment not submitted to GEO