## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[gastrocnemius_medialis-ENCSR823ZCR-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=gastrocnemius_medialis-ENCSR823ZCR-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=gastrocnemius_medialis-ENCSR823ZCR-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:21 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	41184948	0	0	5991994	4935021	0.14549	609470461

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.131597
2.0	2.189252
3.0	3.177798
4.0	4.10175
5.0	4.965329
6.0	5.77248
7.0	6.526889
8.0	7.232003
9.0	7.891044
10.0	8.507022
11.0	9.08275
12.0	9.620858
13.0	10.123805
14.0	10.593889
15.0	11.033256
16.0	11.443914
17.0	11.827739
18.0	12.186483
19.0	12.521786
20.0	12.83518
21.0	13.128096
22.0	13.401872
23.0	13.657759
24.0	13.896926
25.0	14.120465
26.0	14.329397
27.0	14.524677
28.0	14.707198
29.0	14.877792
30.0	15.037238
31.0	15.186267
32.0	15.325557
33.0	15.455746
34.0	15.577428
35.0	15.691159
36.0	15.797458
37.0	15.896812
38.0	15.989674
39.0	16.076468
40.0	16.15759
41.0	16.233412
42.0	16.30428
43.0	16.370516
44.0	16.432425
45.0	16.490289
46.0	16.544371
47.0	16.59492
48.0	16.642165
49.0	16.686324
50.0	16.727597
51.0	16.766173
52.0	16.802229
53.0	16.835929
54.0	16.867426
55.0	16.896866
56.0	16.924382
57.0	16.950099
58.0	16.974137
59.0	16.996604
60.0	17.017602
61.0	17.037229
62.0	17.055573
63.0	17.072719
64.0	17.088744
65.0	17.103722
66.0	17.117721
67.0	17.130806
68.0	17.143035
69.0	17.154466
70.0	17.16515
71.0	17.175135
72.0	17.184468
73.0	17.193191
74.0	17.201345
75.0	17.208965
76.0	17.216088
77.0	17.222745
78.0	17.228967
79.0	17.234782
80.0	17.240218
81.0	17.245298
82.0	17.250047
83.0	17.254485
84.0	17.258633
85.0	17.26251
86.0	17.266134
87.0	17.269521
88.0	17.272687
89.0	17.275645
90.0	17.278411
91.0	17.280996
92.0	17.283412
93.0	17.28567
94.0	17.28778
95.0	17.289753
96.0	17.291596
97.0	17.293319
98.0	17.29493
99.0	17.296435
100.0	17.297842