## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[gastrocnemius_medialis-ENCSR689SDA-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=gastrocnemius_medialis-ENCSR689SDA-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=gastrocnemius_medialis-ENCSR689SDA-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	37611571	0	0	1576816	1075041	0.041924	1317988903

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.029006
2.0	2.029062
3.0	3.000983
4.0	3.94556
5.0	4.863562
6.0	5.755738
7.0	6.622814
8.0	7.465495
9.0	8.284468
10.0	9.080401
11.0	9.853941
12.0	10.605719
13.0	11.336346
14.0	12.046418
15.0	12.736513
16.0	13.407193
17.0	14.059004
18.0	14.692478
19.0	15.308129
20.0	15.90646
21.0	16.487957
22.0	17.053095
23.0	17.602334
24.0	18.13612
25.0	18.654889
26.0	19.159062
27.0	19.649052
28.0	20.125256
29.0	20.588063
30.0	21.03785
31.0	21.474982
32.0	21.899816
33.0	22.312698
34.0	22.713964
35.0	23.103941
36.0	23.482946
37.0	23.851288
38.0	24.209268
39.0	24.557176
40.0	24.895297
41.0	25.223905
42.0	25.543267
43.0	25.853645
44.0	26.155291
45.0	26.44845
46.0	26.733362
47.0	27.010258
48.0	27.279364
49.0	27.540899
50.0	27.795076
51.0	28.042102
52.0	28.282179
53.0	28.515501
54.0	28.742259
55.0	28.962637
56.0	29.176815
57.0	29.384968
58.0	29.587264
59.0	29.783869
60.0	29.974943
61.0	30.160641
62.0	30.341115
63.0	30.516512
64.0	30.686973
65.0	30.85264
66.0	31.013645
67.0	31.170121
68.0	31.322194
69.0	31.469989
70.0	31.613626
71.0	31.753222
72.0	31.88889
73.0	32.020742
74.0	32.148884
75.0	32.273421
76.0	32.394455
77.0	32.512083
78.0	32.626402
79.0	32.737505
80.0	32.845482
81.0	32.950421
82.0	33.052408
83.0	33.151526
84.0	33.247855
85.0	33.341474
86.0	33.432459
87.0	33.520884
88.0	33.606822
89.0	33.690341
90.0	33.771512
91.0	33.850398
92.0	33.927065
93.0	34.001575
94.0	34.073989
95.0	34.144366
96.0	34.212763
97.0	34.279235
98.0	34.343838
99.0	34.406622
100.0	34.467641