## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[gastrocnemius_medialis-ENCSR308HPZ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=gastrocnemius_medialis-ENCSR308HPZ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=gastrocnemius_medialis-ENCSR308HPZ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	46307330	0	0	2108456	733028	0.045532	739774783

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015586
2.0	1.969549
3.0	2.865628
4.0	3.707334
5.0	4.497968
6.0	5.240629
7.0	5.938226
8.0	6.593495
9.0	7.209003
10.0	7.787164
11.0	8.330244
12.0	8.840371
13.0	9.319545
14.0	9.769643
15.0	10.192431
16.0	10.589564
17.0	10.962601
18.0	11.313003
19.0	11.642143
20.0	11.951312
21.0	12.241721
22.0	12.514509
23.0	12.770745
24.0	13.011432
25.0	13.237516
26.0	13.449881
27.0	13.649361
28.0	13.836736
29.0	14.012743
30.0	14.178069
31.0	14.333364
32.0	14.479236
33.0	14.616257
34.0	14.744963
35.0	14.86586
36.0	14.979422
37.0	15.086092
38.0	15.18629
39.0	15.280409
40.0	15.368816
41.0	15.451859
42.0	15.529864
43.0	15.603135
44.0	15.67196
45.0	15.736609
46.0	15.797336
47.0	15.854377
48.0	15.907958
49.0	15.958287
50.0	16.005562
51.0	16.049969
52.0	16.091682
53.0	16.130863
54.0	16.167667
55.0	16.202238
56.0	16.234711
57.0	16.265214
58.0	16.293866
59.0	16.320779
60.0	16.346059
61.0	16.369806
62.0	16.392111
63.0	16.413063
64.0	16.432744
65.0	16.451231
66.0	16.468595
67.0	16.484907
68.0	16.500228
69.0	16.51462
70.0	16.528138
71.0	16.540837
72.0	16.552764
73.0	16.563968
74.0	16.574492
75.0	16.584378
76.0	16.593664
77.0	16.602386
78.0	16.610579
79.0	16.618275
80.0	16.625504
81.0	16.632294
82.0	16.638673
83.0	16.644664
84.0	16.650292
85.0	16.655578
86.0	16.660544
87.0	16.665208
88.0	16.669589
89.0	16.673704
90.0	16.67757
91.0	16.681201
92.0	16.684612
93.0	16.687816
94.0	16.690825
95.0	16.693652
96.0	16.696307
97.0	16.698801
98.0	16.701144
99.0	16.703345
100.0	16.705412