## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[gastrocnemius_medialis-ENCSR258JCL-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=gastrocnemius_medialis-ENCSR258JCL-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=gastrocnemius_medialis-ENCSR258JCL-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:21 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	45967053	0	0	2174456	708465	0.047305	683450418

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015133
2.0	1.964237
3.0	2.851605
4.0	3.681255
5.0	4.456939
6.0	5.182169
7.0	5.860226
8.0	6.494178
9.0	7.086895
10.0	7.641058
11.0	8.159176
12.0	8.643592
13.0	9.096499
14.0	9.519947
15.0	9.915851
16.0	10.286004
17.0	10.632079
18.0	10.955645
19.0	11.258163
20.0	11.541005
21.0	11.805448
22.0	12.052691
23.0	12.283852
24.0	12.499977
25.0	12.702044
26.0	12.890967
27.0	13.067602
28.0	13.232748
29.0	13.387151
30.0	13.531512
31.0	13.666482
32.0	13.792673
33.0	13.910656
34.0	14.020965
35.0	14.124099
36.0	14.220524
37.0	14.310677
38.0	14.394966
39.0	14.473773
40.0	14.547454
41.0	14.616342
42.0	14.680749
43.0	14.740966
44.0	14.797267
45.0	14.849906
46.0	14.899121
47.0	14.945134
48.0	14.988155
49.0	15.028378
50.0	15.065984
51.0	15.101144
52.0	15.134017
53.0	15.164751
54.0	15.193487
55.0	15.220353
56.0	15.245472
57.0	15.268957
58.0	15.290915
59.0	15.311444
60.0	15.330638
61.0	15.348583
62.0	15.365362
63.0	15.381048
64.0	15.395715
65.0	15.409427
66.0	15.422248
67.0	15.434234
68.0	15.445441
69.0	15.455919
70.0	15.465716
71.0	15.474875
72.0	15.483439
73.0	15.491445
74.0	15.498931
75.0	15.505929
76.0	15.512473
77.0	15.518591
78.0	15.524311
79.0	15.529659
80.0	15.534659
81.0	15.539333
82.0	15.543704
83.0	15.547791
84.0	15.551611
85.0	15.555183
86.0	15.558523
87.0	15.561646
88.0	15.564565
89.0	15.567295
90.0	15.569847
91.0	15.572233
92.0	15.574463
93.0	15.576549
94.0	15.578499
95.0	15.580322
96.0	15.582027
97.0	15.583621
98.0	15.585111
99.0	15.586504
100.0	15.587806