## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-ENCSR356KRQ-rep2-5.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-ENCSR356KRQ-rep2-5.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-ENCSR356KRQ-rep2-5.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	14128554	0	0	1356203	854620	0.09599	171188157

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.061765
2.0	2.039419
3.0	2.939625
4.0	3.768518
5.0	4.531747
6.0	5.234515
7.0	5.881611
8.0	6.477445
9.0	7.026078
10.0	7.531249
11.0	7.996401
12.0	8.424705
13.0	8.819079
14.0	9.182212
15.0	9.516577
16.0	9.824455
17.0	10.107944
18.0	10.368975
19.0	10.609327
20.0	10.830639
21.0	11.034419
22.0	11.222056
23.0	11.394829
24.0	11.553915
25.0	11.700399
26.0	11.835278
27.0	11.959472
28.0	12.073828
29.0	12.179125
30.0	12.27608
31.0	12.365355
32.0	12.447558
33.0	12.523248
34.0	12.592943
35.0	12.657116
36.0	12.716206
37.0	12.770615
38.0	12.820713
39.0	12.866843
40.0	12.909319
41.0	12.948429
42.0	12.984442
43.0	13.017601
44.0	13.048134
45.0	13.076248
46.0	13.102135
47.0	13.125971
48.0	13.147919
49.0	13.168128
50.0	13.186736
51.0	13.20387
52.0	13.219647
53.0	13.234174
54.0	13.24755
55.0	13.259867
56.0	13.271208
57.0	13.28165
58.0	13.291265
59.0	13.300119
60.0	13.308271
61.0	13.315777
62.0	13.322689
63.0	13.329053
64.0	13.334913
65.0	13.340309
66.0	13.345278
67.0	13.349852
68.0	13.354065
69.0	13.357943
70.0	13.361515
71.0	13.364803
72.0	13.367831
73.0	13.370619
74.0	13.373186
75.0	13.37555
76.0	13.377727
77.0	13.379731
78.0	13.381577
79.0	13.383276
80.0	13.38484
81.0	13.386281
82.0	13.387608
83.0	13.388829
84.0	13.389954
85.0	13.390989
86.0	13.391943
87.0	13.392821
88.0	13.393629
89.0	13.394374
90.0	13.395059
91.0	13.39569
92.0	13.396271
93.0	13.396807
94.0	13.397299
95.0	13.397753
96.0	13.398171
97.0	13.398555
98.0	13.39891
99.0	13.399236
100.0	13.399536