## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-ENCSR356KRQ-rep2-4.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-ENCSR356KRQ-rep2-4.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-ENCSR356KRQ-rep2-4.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15362172	0	0	1401671	829938	0.091242	179812678

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.054707
2.0	2.023048
3.0	2.912095
4.0	3.72834
5.0	4.477746
6.0	5.165786
7.0	5.797485
8.0	6.377456
9.0	6.909935
10.0	7.398812
11.0	7.847656
12.0	8.259745
13.0	8.63809
14.0	8.985454
15.0	9.304373
16.0	9.597177
17.0	9.866005
18.0	10.112819
19.0	10.339422
20.0	10.54747
21.0	10.738481
22.0	10.913851
23.0	11.07486
24.0	11.222685
25.0	11.358405
26.0	11.483012
27.0	11.597415
28.0	11.70245
29.0	11.798884
30.0	11.887421
31.0	11.968708
32.0	12.043339
33.0	12.111859
34.0	12.174767
35.0	12.232525
36.0	12.285553
37.0	12.334238
38.0	12.378937
39.0	12.419976
40.0	12.457654
41.0	12.492247
42.0	12.524007
43.0	12.553166
44.0	12.579938
45.0	12.604517
46.0	12.627084
47.0	12.647803
48.0	12.666825
49.0	12.68429
50.0	12.700324
51.0	12.715045
52.0	12.728561
53.0	12.74097
54.0	12.752363
55.0	12.762824
56.0	12.772427
57.0	12.781244
58.0	12.789339
59.0	12.796772
60.0	12.803595
61.0	12.80986
62.0	12.815612
63.0	12.820893
64.0	12.825741
65.0	12.830193
66.0	12.83428
67.0	12.838032
68.0	12.841477
69.0	12.84464
70.0	12.847544
71.0	12.85021
72.0	12.852658
73.0	12.854905
74.0	12.856968
75.0	12.858863
76.0	12.860602
77.0	12.862199
78.0	12.863665
79.0	12.865011
80.0	12.866246
81.0	12.867381
82.0	12.868423
83.0	12.869379
84.0	12.870257
85.0	12.871063
86.0	12.871803
87.0	12.872483
88.0	12.873107
89.0	12.87368
90.0	12.874206
91.0	12.874688
92.0	12.875132
93.0	12.875539
94.0	12.875912
95.0	12.876256
96.0	12.876571
97.0	12.87686
98.0	12.877125
99.0	12.877369
100.0	12.877593