## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-ENCSR356KRQ-rep2-3.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-ENCSR356KRQ-rep2-3.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-ENCSR356KRQ-rep2-3.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:25 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	29476769	0	0	4797777	2817456	0.162765	170444352

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.096832
2.0	2.019473
3.0	2.795587
4.0	3.448444
5.0	3.997619
6.0	4.459579
7.0	4.848174
8.0	5.175054
9.0	5.450023
10.0	5.681322
11.0	5.875889
12.0	6.039556
13.0	6.17723
14.0	6.29304
15.0	6.390458
16.0	6.472405
17.0	6.541338
18.0	6.599323
19.0	6.648099
20.0	6.689129
21.0	6.723643
22.0	6.752676
23.0	6.777098
24.0	6.797642
25.0	6.814923
26.0	6.829459
27.0	6.841687
28.0	6.851973
29.0	6.860626
30.0	6.867904
31.0	6.874026
32.0	6.879176
33.0	6.883509
34.0	6.887153
35.0	6.890218
36.0	6.892797
37.0	6.894966
38.0	6.896791
39.0	6.898325
40.0	6.899617
41.0	6.900703
42.0	6.901616
43.0	6.902385
44.0	6.903031
45.0	6.903575
46.0	6.904032
47.0	6.904417
48.0	6.904741
49.0	6.905013
50.0	6.905242
51.0	6.905435
52.0	6.905597
53.0	6.905733
54.0	6.905848
55.0	6.905944
56.0	6.906025
57.0	6.906094
58.0	6.906151
59.0	6.906199
60.0	6.90624
61.0	6.906274
62.0	6.906303
63.0	6.906327
64.0	6.906347
65.0	6.906365
66.0	6.906379
67.0	6.906391
68.0	6.906401
69.0	6.90641
70.0	6.906417
71.0	6.906423
72.0	6.906428
73.0	6.906432
74.0	6.906436
75.0	6.906439
76.0	6.906442
77.0	6.906444
78.0	6.906446
79.0	6.906447
80.0	6.906448
81.0	6.906449
82.0	6.90645
83.0	6.906451
84.0	6.906452
85.0	6.906452
86.0	6.906453
87.0	6.906453
88.0	6.906453
89.0	6.906454
90.0	6.906454
91.0	6.906454
92.0	6.906454
93.0	6.906454
94.0	6.906455
95.0	6.906455
96.0	6.906455
97.0	6.906455
98.0	6.906455
99.0	6.906455
100.0	6.906455