## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep2-4.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep2-4.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep2-4.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	11743010	0	0	2566696	1318343	0.218572	39977764

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.108886
2.0	1.935529
3.0	2.551767
4.0	3.011155
5.0	3.353616
6.0	3.608911
7.0	3.799225
8.0	3.9411
9.0	4.046863
10.0	4.125706
11.0	4.184482
12.0	4.228297
13.0	4.260961
14.0	4.28531
15.0	4.303462
16.0	4.316994
17.0	4.327081
18.0	4.334601
19.0	4.340207
20.0	4.344386
21.0	4.347501
22.0	4.349824
23.0	4.351555
24.0	4.352846
25.0	4.353808
26.0	4.354525
27.0	4.35506
28.0	4.355458
29.0	4.355755
30.0	4.355977
31.0	4.356142
32.0	4.356265
33.0	4.356357
34.0	4.356425
35.0	4.356476
36.0	4.356514
37.0	4.356543
38.0	4.356564
39.0	4.356579
40.0	4.356591
41.0	4.3566
42.0	4.356606
43.0	4.356611
44.0	4.356615
45.0	4.356618
46.0	4.35662
47.0	4.356621
48.0	4.356622
49.0	4.356623
50.0	4.356624
51.0	4.356624
52.0	4.356625
53.0	4.356625
54.0	4.356625
55.0	4.356625
56.0	4.356625
57.0	4.356625
58.0	4.356625
59.0	4.356625
60.0	4.356625
61.0	4.356625
62.0	4.356625
63.0	4.356626
64.0	4.356626
65.0	4.356626
66.0	4.356626
67.0	4.356626
68.0	4.356626
69.0	4.356626
70.0	4.356626
71.0	4.356626
72.0	4.356626
73.0	4.356626
74.0	4.356626
75.0	4.356626
76.0	4.356626
77.0	4.356626
78.0	4.356626
79.0	4.356626
80.0	4.356626
81.0	4.356626
82.0	4.356626
83.0	4.356626
84.0	4.356626
85.0	4.356626
86.0	4.356626
87.0	4.356626
88.0	4.356626
89.0	4.356626
90.0	4.356626
91.0	4.356626
92.0	4.356626
93.0	4.356626
94.0	4.356626
95.0	4.356626
96.0	4.356626
97.0	4.356626
98.0	4.356626
99.0	4.356626
100.0	4.356626