## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-3.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-3.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-3.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:19 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	168876	0	0	7641	6627	0.045246	12926500

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.040578
2.0	2.067651
3.0	3.081392
4.0	4.081976
5.0	5.069573
6.0	6.044352
7.0	7.006479
8.0	7.956117
9.0	8.893431
10.0	9.818578
11.0	10.731718
12.0	11.633005
13.0	12.522595
14.0	13.400638
15.0	14.267285
16.0	15.122683
17.0	15.966979
18.0	16.800316
19.0	17.622837
20.0	18.434682
21.0	19.235991
22.0	20.026898
23.0	20.80754
24.0	21.57805
25.0	22.338559
26.0	23.089198
27.0	23.830093
28.0	24.561372
29.0	25.28316
30.0	25.995579
31.0	26.698752
32.0	27.392797
33.0	28.077835
34.0	28.753981
35.0	29.421351
36.0	30.08006
37.0	30.730218
38.0	31.371938
39.0	32.005329
40.0	32.630499
41.0	33.247554
42.0	33.856601
43.0	34.457742
44.0	35.051081
45.0	35.636719
46.0	36.214756
47.0	36.78529
48.0	37.348419
49.0	37.904239
50.0	38.452845
51.0	38.99433
52.0	39.528787
53.0	40.056307
54.0	40.576981
55.0	41.090896
56.0	41.598141
57.0	42.098802
58.0	42.592965
59.0	43.080714
60.0	43.562133
61.0	44.037303
62.0	44.506305
63.0	44.969221
64.0	45.426127
65.0	45.877104
66.0	46.322227
67.0	46.761573
68.0	47.195216
69.0	47.623231
70.0	48.04569
71.0	48.462667
72.0	48.874231
73.0	49.280453
74.0	49.681403
75.0	50.077149
76.0	50.467758
77.0	50.853297
78.0	51.233832
79.0	51.609429
80.0	51.98015
81.0	52.346059
82.0	52.70722
83.0	53.063692
84.0	53.415538
85.0	53.762817
86.0	54.105589
87.0	54.443911
88.0	54.777843
89.0	55.10744
90.0	55.432759
91.0	55.753856
92.0	56.070785
93.0	56.383601
94.0	56.692357
95.0	56.997105
96.0	57.297897
97.0	57.594786
98.0	57.887821
99.0	58.177053
100.0	58.46253