## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-2.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-2.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-2.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	457997	0	0	18341	15816	0.040046	38570096

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.035556
2.0	2.058889
3.0	3.070141
4.0	4.069457
5.0	5.056977
6.0	6.032839
7.0	6.997183
8.0	7.950143
9.0	8.891854
10.0	9.822449
11.0	10.74206
12.0	11.650815
13.0	12.548843
14.0	13.43627
15.0	14.313222
16.0	15.179822
17.0	16.036193
18.0	16.882455
19.0	17.718728
20.0	18.545129
21.0	19.361775
22.0	20.168781
23.0	20.966262
24.0	21.754328
25.0	22.533092
26.0	23.302664
27.0	24.063151
28.0	24.814661
29.0	25.557301
30.0	26.291174
31.0	27.016384
32.0	27.733034
33.0	28.441225
34.0	29.141055
35.0	29.832625
36.0	30.516032
37.0	31.191371
38.0	31.858739
39.0	32.518228
40.0	33.169933
41.0	33.813946
42.0	34.450356
43.0	35.079254
44.0	35.700728
45.0	36.314866
46.0	36.921755
47.0	37.52148
48.0	38.114126
49.0	38.699776
50.0	39.278513
51.0	39.850418
52.0	40.415573
53.0	40.974056
54.0	41.525947
55.0	42.071324
56.0	42.610262
57.0	43.142839
58.0	43.669129
59.0	44.189207
60.0	44.703146
61.0	45.211018
62.0	45.712895
63.0	46.208848
64.0	46.698946
65.0	47.183259
66.0	47.661856
67.0	48.134803
68.0	48.602167
69.0	49.064014
70.0	49.52041
71.0	49.971418
72.0	50.417102
73.0	50.857526
74.0	51.292751
75.0	51.722838
76.0	52.147848
77.0	52.567841
78.0	52.982877
79.0	53.393014
80.0	53.798309
81.0	54.19882
82.0	54.594604
83.0	54.985715
84.0	55.37221
85.0	55.754142
86.0	56.131566
87.0	56.504535
88.0	56.873102
89.0	57.237317
90.0	57.597234
91.0	57.952901
92.0	58.304371
93.0	58.651692
94.0	58.994913
95.0	59.334082
96.0	59.669248
97.0	60.000457
98.0	60.327757
99.0	60.651193
100.0	60.970812