## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-5.5d-ENCSR798IJQ-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	457822	0	0	16655	14046	0.036379	37593810

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.031459
2.0	2.050433
3.0	3.057072
4.0	4.051527
5.0	5.033945
6.0	6.004472
7.0	6.963251
8.0	7.910425
9.0	8.846134
10.0	9.770516
11.0	10.68371
12.0	11.585851
13.0	12.477071
14.0	13.357504
15.0	14.22728
16.0	15.086528
17.0	15.935375
18.0	16.773948
19.0	17.60237
20.0	18.420765
21.0	19.229254
22.0	20.027957
23.0	20.816992
24.0	21.596476
25.0	22.366526
26.0	23.127254
27.0	23.878774
28.0	24.621198
29.0	25.354635
30.0	26.079195
31.0	26.794984
32.0	27.502109
33.0	28.200675
34.0	28.890785
35.0	29.572542
36.0	30.246047
37.0	30.911399
38.0	31.568698
39.0	32.218041
40.0	32.859524
41.0	33.493242
42.0	34.11929
43.0	34.737759
44.0	35.348743
45.0	35.952331
46.0	36.548613
47.0	37.137678
48.0	37.719612
49.0	38.294503
50.0	38.862434
51.0	39.423492
52.0	39.977758
53.0	40.525315
54.0	41.066245
55.0	41.600627
56.0	42.12854
57.0	42.650064
58.0	43.165275
59.0	43.67425
60.0	44.177064
61.0	44.673791
62.0	45.164507
63.0	45.649282
64.0	46.12819
65.0	46.6013
66.0	47.068685
67.0	47.530411
68.0	47.986549
69.0	48.437166
70.0	48.882328
71.0	49.322102
72.0	49.756553
73.0	50.185745
74.0	50.609742
75.0	51.028607
76.0	51.442402
77.0	51.851188
78.0	52.255026
79.0	52.653976
80.0	53.048097
81.0	53.437447
82.0	53.822085
83.0	54.202067
84.0	54.577449
85.0	54.948288
86.0	55.314638
87.0	55.676553
88.0	56.034088
89.0	56.387295
90.0	56.736227
91.0	57.080935
92.0	57.421471
93.0	57.757885
94.0	58.090227
95.0	58.418546
96.0	58.742891
97.0	59.06331
98.0	59.37985
99.0	59.692559
100.0	60.001483