## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[esophagus_squamous_epithelium-ENCSR096BPX-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=esophagus_squamous_epithelium-ENCSR096BPX-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=esophagus_squamous_epithelium-ENCSR096BPX-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	25560312	0	0	762312	623561	0.029824	2232534320

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.024863
2.0	2.038059
3.0	3.039721
4.0	4.029981
5.0	5.008967
6.0	5.976809
7.0	6.933634
8.0	7.879566
9.0	8.81473
10.0	9.739249
11.0	10.653243
12.0	11.556832
13.0	12.450135
14.0	13.333269
15.0	14.20635
16.0	15.069491
17.0	15.922807
18.0	16.766409
19.0	17.600408
20.0	18.424913
21.0	19.240031
22.0	20.045871
23.0	20.842537
24.0	21.630135
25.0	22.408766
26.0	23.178534
27.0	23.939538
28.0	24.69188
29.0	25.435658
30.0	26.170968
31.0	26.897908
32.0	27.616572
33.0	28.327056
34.0	29.029451
35.0	29.723851
36.0	30.410346
37.0	31.089026
38.0	31.75998
39.0	32.423296
40.0	33.079061
41.0	33.727361
42.0	34.368281
43.0	35.001905
44.0	35.628316
45.0	36.247596
46.0	36.859826
47.0	37.465087
48.0	38.063458
49.0	38.655017
50.0	39.239842
51.0	39.818009
52.0	40.389595
53.0	40.954674
54.0	41.51332
55.0	42.065607
56.0	42.611606
57.0	43.151391
58.0	43.68503
59.0	44.212595
60.0	44.734154
61.0	45.249775
62.0	45.759527
63.0	46.263476
64.0	46.761689
65.0	47.25423
66.0	47.741163
67.0	48.222554
68.0	48.698465
69.0	49.168958
70.0	49.634095
71.0	50.093937
72.0	50.548545
73.0	50.997977
74.0	51.442293
75.0	51.881551
76.0	52.315809
77.0	52.745123
78.0	53.16955
79.0	53.589146
80.0	54.003965
81.0	54.414061
82.0	54.81949
83.0	55.220303
84.0	55.616553
85.0	56.008292
86.0	56.395572
87.0	56.778444
88.0	57.156957
89.0	57.531161
90.0	57.901105
91.0	58.266838
92.0	58.628407
93.0	58.98586
94.0	59.339245
95.0	59.688606
96.0	60.03399
97.0	60.375443
98.0	60.713009
99.0	61.046732
100.0	61.376655